--- DOAJ_listed: '1' OA_place: publisher OA_type: gold PlanS_conform: '1' _id: '22616' abstract: - lang: eng text: Accretion disks in active galactic nuclei (AGN) are promising sites for mergers of stellar-mass black holes (BHs) detectable via gravitational waves (GWs). These environments facilitate both in situ formation and dynamical capture of compact objects and their subsequent mergers. The uncertain origin of GW events detected by LIGO, Virgo, and KAGRA motivates searching for accompanying electromagnetic (EM) signatures. Here, we investigate postmerger EM flares associated with jets launched from merger remnants, as well as from the shocked ambient gas as the jet breaks out of the disk. We find that jet breakout produces luminous gamma-ray emission, detectable with MeV-band telescopes. Cooling emission from a shocked circum-BH minidisk, winds, and background AGN disk peaks in the UV and optical, with durations ranging from about an hour to a month, and can be identified through year-long monitoring of ∼103 AGNs with luminosities ranging from ∼1044 to ∼1045 erg s−1. With a single set of parameters, this postmerger jet model produces gamma-ray, hard X-ray, and optical flares similar to those claimed to be associated with GW events. Furthermore, by incorporating a transition from a high- to low-angular-momentum accretion state after the merger, the model avoids excessive BH growth, alleviating tensions with hyper-Eddington accretion scenarios. acknowledgement: We thank Wen-Biao Han for fruitful discussions on possible scenarios. H.T. is supported by The National Key R&D Program of China (grant No. 2024YFC2207700). S.S.K. was supported by Japan Society for the Promotion of Science (JSPS) KAKENHI grant numbers 22K14028, 21H04487, and 23H04899 and the Tohoku Initiative for Fostering Global Researchers for Interdisciplinary Sciences (TI-FRIS) of MEXT’s Strategic Professional Development Program for Young Researchers. Z.H. was supported by NASA grant 80NSSC22K0822 and NSF grant AST-2006176. article_number: '121' article_processing_charge: Yes article_type: original author: - first_name: Hiromichi full_name: Tagawa, Hiromichi last_name: Tagawa - first_name: Zoltán full_name: Haiman, Zoltán id: 7c006e8c-cc0d-11ee-8322-cb904ef76f36 last_name: Haiman orcid: 0000-0003-3633-5403 - first_name: Shigeo S. full_name: Kimura, Shigeo S. last_name: Kimura - first_name: Hassen M. full_name: Yesuf, Hassen M. last_name: Yesuf - first_name: Hengxiao full_name: Guo, Hengxiao last_name: Guo citation: ama: 'Tagawa H, Haiman Z, Kimura SS, Yesuf HM, Guo H. Electromagnetic flares from compact-object mergers in active galactic nucleus disks: Signatures and predictions. The Astrophysical Journal. 2026;1006(2). doi:10.3847/1538-4357/ae7d29' apa: 'Tagawa, H., Haiman, Z., Kimura, S. S., Yesuf, H. M., & Guo, H. (2026). Electromagnetic flares from compact-object mergers in active galactic nucleus disks: Signatures and predictions. The Astrophysical Journal. IOP Publishing. https://doi.org/10.3847/1538-4357/ae7d29' chicago: 'Tagawa, Hiromichi, Zoltán Haiman, Shigeo S. Kimura, Hassen M. Yesuf, and Hengxiao Guo. “Electromagnetic Flares from Compact-Object Mergers in Active Galactic Nucleus Disks: Signatures and Predictions.” The Astrophysical Journal. IOP Publishing, 2026. https://doi.org/10.3847/1538-4357/ae7d29.' ieee: 'H. Tagawa, Z. Haiman, S. S. Kimura, H. M. Yesuf, and H. Guo, “Electromagnetic flares from compact-object mergers in active galactic nucleus disks: Signatures and predictions,” The Astrophysical Journal, vol. 1006, no. 2. IOP Publishing, 2026.' ista: 'Tagawa H, Haiman Z, Kimura SS, Yesuf HM, Guo H. 2026. Electromagnetic flares from compact-object mergers in active galactic nucleus disks: Signatures and predictions. The Astrophysical Journal. 1006(2), 121.' mla: 'Tagawa, Hiromichi, et al. “Electromagnetic Flares from Compact-Object Mergers in Active Galactic Nucleus Disks: Signatures and Predictions.” The Astrophysical Journal, vol. 1006, no. 2, 121, IOP Publishing, 2026, doi:10.3847/1538-4357/ae7d29.' short: H. Tagawa, Z. Haiman, S.S. Kimura, H.M. Yesuf, H. Guo, The Astrophysical Journal 1006 (2026). das_tickbox: '0' date_created: 2026-08-02T22:01:52Z date_published: 2026-08-01T00:00:00Z date_updated: 2026-08-03T08:00:54Z day: '01' ddc: - '520' department: - _id: ZoHa doi: 10.3847/1538-4357/ae7d29 file: - access_level: open_access checksum: 767660c73eb8b0a8bf39f54afe240bc6 content_type: application/pdf creator: dernst date_created: 2026-08-03T07:58:25Z date_updated: 2026-08-03T07:58:25Z file_id: '22630' file_name: 2026_AstrophysicalJournal_Tagawa.pdf file_size: 2873666 relation: main_file success: 1 file_date_updated: 2026-08-03T07:58:25Z has_accepted_license: '1' intvolume: ' 1006' issue: '2' language: - iso: eng month: '08' oa: 1 oa_version: Published Version publication: The Astrophysical Journal publication_identifier: eissn: - 1538-4357 issn: - 0004-637X publication_status: published publisher: IOP Publishing quality_controlled: '1' researchdata_availability: no scopus_import: '1' status: public supplementarymaterial: yes title: 'Electromagnetic flares from compact-object mergers in active galactic nucleus disks: Signatures and predictions' tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 1006 year: '2026' ... --- DOAJ_listed: '1' OA_place: publisher OA_type: gold PlanS_conform: '1' _id: '22620' abstract: - lang: eng text: Development depends on precise shaping of molecular gradients, but how natural selection acts to establish precision is unknown. Here, we analyze genes that control differences in the gradient of yellow flower color between two varieties of snapdragon (Antirrhinum). We show that these differences depend, in part, on cis-regulatory variation in the pigment biosynthetic gene, FLAVIA (FLA). FLA interacts multiplicatively with three other loci, one of which is a trans-acting regulator of FLA, to further shape the yellow gradient. All the loci exhibit clines at a hybrid zone, with widths that correlate with phenotypic effect, showing how selection can hone gradient shape with remarkable precision by acting on cis and trans variation at multiple loci. acknowledgement: We thank C. Taylor for plant care, N. Barton for sharing SNP data and useful comments, H. Tavares for useful discussions and bioinformatics, M. Couchman for field and data archiving, T. Li for help with photography and phenotyping, J. Chan for help with ImageJ analyses, and X. Rebocho for organization of field experiments. This work was supported by Biotechnology and Biological Sciences Research Council grants BB/S009256/1 (to E.C.), BB/G009325/1 (to E.C.), BBS/E/JI/230002C (to E.C.), and BBS/E/J/000PR9773 (to E.C.); Biotechnology Biological Sciences Research Council Norwich Research Park Biosciences Doctoral Training Partnership grant BB/M011216/1 (to D.R.); and Natural Science Foundation of China grant 32030007 (to Y.X.) article_processing_charge: Yes article_type: original author: - first_name: Desmond full_name: Bradley, Desmond last_name: Bradley - first_name: Louis full_name: Boell, Louis last_name: Boell - first_name: Daniel full_name: Richardson, Daniel last_name: Richardson - first_name: Lucy full_name: Copsey, Lucy last_name: Copsey - first_name: Annabel full_name: Whibley, Annabel last_name: Whibley - first_name: Ting full_name: Xu, Ting last_name: Xu - first_name: Yu’E full_name: Zhang, Yu’E last_name: Zhang - first_name: Yongbiao full_name: Xue, Yongbiao last_name: Xue - first_name: David full_name: Field, David id: 419049E2-F248-11E8-B48F-1D18A9856A87 last_name: Field orcid: 0000-0002-4014-8478 - first_name: Enrico full_name: Coen, Enrico last_name: Coen citation: ama: Bradley D, Boell L, Richardson D, et al. Shaping of developmental gradients through selection on multiple loci in Antirrhinum. Science Advances. 2026;12(29):1-11. doi:10.1126/sciadv.adx2011 apa: Bradley, D., Boell, L., Richardson, D., Copsey, L., Whibley, A., Xu, T., … Coen, E. (2026). Shaping of developmental gradients through selection on multiple loci in Antirrhinum. Science Advances. AAAS. https://doi.org/10.1126/sciadv.adx2011 chicago: Bradley, Desmond, Louis Boell, Daniel Richardson, Lucy Copsey, Annabel Whibley, Ting Xu, Yu’E Zhang, Yongbiao Xue, David Field, and Enrico Coen. “Shaping of Developmental Gradients through Selection on Multiple Loci in Antirrhinum.” Science Advances. AAAS, 2026. https://doi.org/10.1126/sciadv.adx2011. ieee: D. Bradley et al., “Shaping of developmental gradients through selection on multiple loci in Antirrhinum,” Science Advances, vol. 12, no. 29. AAAS, pp. 1–11, 2026. ista: Bradley D, Boell L, Richardson D, Copsey L, Whibley A, Xu T, Zhang Y, Xue Y, Field D, Coen E. 2026. Shaping of developmental gradients through selection on multiple loci in Antirrhinum. Science Advances. 12(29), 1–11. mla: Bradley, Desmond, et al. “Shaping of Developmental Gradients through Selection on Multiple Loci in Antirrhinum.” Science Advances, vol. 12, no. 29, AAAS, 2026, pp. 1–11, doi:10.1126/sciadv.adx2011. short: D. Bradley, L. Boell, D. Richardson, L. Copsey, A. Whibley, T. Xu, Y. Zhang, Y. Xue, D. Field, E. Coen, Science Advances 12 (2026) 1–11. corr_author: '1' das_tickbox: '1' dataavailabilitystatement: All data and code needed to evaluate and reproduce the results in the paper are present in the paper and/or the Supplementary Materials. All materials generated in this study are described in Materials and Methods and are available on request from E.C. (enrico.coen@jic.ac.uk). date_created: 2026-08-02T22:01:53Z date_published: 2026-07-17T00:00:00Z date_updated: 2026-08-03T09:52:37Z day: '17' ddc: - '570' department: - _id: NiBa doi: 10.1126/sciadv.adx2011 external_id: pmid: - '42467783' file: - access_level: open_access checksum: f9155dc2d9273e43c0caf78dffa96864 content_type: application/pdf creator: dernst date_created: 2026-08-03T09:44:40Z date_updated: 2026-08-03T09:44:40Z file_id: '22635' file_name: 2026_ScienceAdv_Bradley.pdf file_size: 916329 relation: main_file success: 1 file_date_updated: 2026-08-03T09:44:40Z has_accepted_license: '1' intvolume: ' 12' issue: '29' language: - iso: eng month: '07' oa: 1 oa_version: Published Version page: 1-11 pmid: 1 publication: Science Advances publication_identifier: eissn: - 2375-2548 publication_status: published publisher: AAAS quality_controlled: '1' researchdata_availability: no scopus_import: '1' status: public supplementarymaterial: yes title: Shaping of developmental gradients through selection on multiple loci in Antirrhinum tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 12 year: '2026' ... --- OA_place: repository OA_type: green _id: '22619' abstract: - lang: eng text: Planar germanium is currently the only semiconducting platform where high-coherence spin qubits and proximity-induced superconductivity have each been demonstrated. Recent research into spin qubits in Ge/SiGe heterostructures has focused on increasing the thickness of the SiGe capping layer, reporting improvements in the electrostatic noise levels. Meanwhile, heterostructures with thinner capping layers remain rather unexplored, despite the potential advantages for proximity-induced superconductivity. Here, we study a Ge/SiGe heterostructure with a thin SiGe cap d - 4nm and investigate its viability to host low-noise quantum dots. To keep the thermal budget compatible with superconducting layers, low-temperature oxide deposition processes were developed and implemented for the gate dielectrics. The charge noise level of the fabricated devices is estimated to be 1.8  +- 1.0 μeV/ square HZ⁠, comparable to devices fabricated on shallow heterostructures (⁠ d - 20nm⁠) with high-temperature deposited oxides. Low charge noise levels, together with the straightforward integration of superconductors, make this heterostructure an attractive platform for prototyping hybrid semiconducting–superconducting devices. acknowledged_ssus: - _id: M-Shop - _id: NanoFab acknowledgement: 'We sincerely thank Nick van Loo, Greg Mazur, Dhananjay Joshi, and Srijit Goswami for their inputs on low-temperature HfOx deposition; Matias Urdampilleta and Daniel Jirovec for discussions; and Kristen Léonard for the careful reading of the manuscript. This research was supported by the Scientific Service Units of ISTA through resources provided by the Miba Machine Shop and the Nanofabrication facility. The authors acknowledge support from the NOMIS Foundation; the European Innovation Council Pathfinder Grant No. 101115315 (QuKiT); the FWF Projects with DOI:10.55776/F86, DOI:10.55776/PAT7682124, and DOI:10.55776/P36507; and the HE-MSCA-PF project with DOI:10.3030/101150858. ICN2 is supported by the Severo Ochoa Program from Spanish MCIN/AEI (Grant No.: CEX2021-001214-S) and is funded by the CERCA Program/Generalitat de Catalunya. ICN2 acknowledges funding from Generalitat de Catalunya (No. 2021SGR00457). We acknowledge support from the CSIC Interdisciplinary Thematic Platform (PTI+) on Quantum Technologies (PTI-QTEP+).' article_number: '033505' article_processing_charge: No article_type: original arxiv: 1 author: - first_name: Maksim full_name: Borovkov, Maksim id: 1fd0975f-8b61-11ed-b69e-d149334f28c5 last_name: Borovkov - first_name: Yona A full_name: Schell, Yona A id: fe39122d-06bb-11ec-a33b-9e22b40e40a5 last_name: Schell - first_name: Dina full_name: Sokolova, Dina id: 2d2d62f8-72f0-11ef-b75a-8ec3e8a60032 last_name: Sokolova - first_name: Kevin Etienne Robert full_name: Roux, Kevin Etienne Robert id: 53f93ea2-803f-11ed-ab7e-b283135794ef last_name: Roux - first_name: Paul full_name: Falthansl-Scheinecker, Paul id: 85b43b21-15b2-11ec-abd3-e2c252cc2285 last_name: Falthansl-Scheinecker - first_name: Giorgio full_name: Fabris, Giorgio id: 298cf6f3-1ff6-11ee-9fa6-d94cfa0b3352 last_name: Fabris - first_name: Devashish C full_name: Shah, Devashish C id: de191434-4e7e-11ef-bf4b-9a056fc19fc3 last_name: Shah orcid: 0009-0007-5829-7707 - first_name: Jaime full_name: Saez Mollejo, Jaime id: e0390f72-f6e0-11ea-865d-862393336714 last_name: Saez Mollejo - first_name: Rodolfo full_name: Previdi, Rodolfo id: bc4ea1dc-00ce-11ec-8a4e-b325ca8b9876 last_name: Previdi - first_name: Inas full_name: Taha, Inas last_name: Taha - first_name: Aziz full_name: Genç, Aziz last_name: Genç - first_name: Jordi full_name: Arbiol, Jordi last_name: Arbiol - first_name: Stefano full_name: Calcaterra, Stefano last_name: Calcaterra - first_name: Afonso De Cerdeira full_name: Oliveira, Afonso De Cerdeira last_name: Oliveira - first_name: Daniel full_name: Chrastina, Daniel last_name: Chrastina - first_name: Giovanni full_name: Isella, Giovanni last_name: Isella - first_name: Anton full_name: Bubis, Anton id: 1f6212b5-f795-11ec-9c0c-de4780302890 last_name: Bubis - first_name: Georgios full_name: Katsaros, Georgios id: 38DB5788-F248-11E8-B48F-1D18A9856A87 last_name: Katsaros orcid: 0000-0001-8342-202X citation: ama: Borovkov M, Schell YA, Sokolova D, et al. Low-noise quantum dots in ultra-shallow Ge/SiGe heterostructures for prototyping hybrid semiconducting–superconducting devices. Applied Physics Letters. 2026;129(3). doi:10.1063/5.0333142 apa: Borovkov, M., Schell, Y. A., Sokolova, D., Roux, K. E. R., Falthansl-Scheinecker, P., Fabris, G., … Katsaros, G. (2026). Low-noise quantum dots in ultra-shallow Ge/SiGe heterostructures for prototyping hybrid semiconducting–superconducting devices. Applied Physics Letters. AIP Publishing. https://doi.org/10.1063/5.0333142 chicago: Borovkov, Maksim, Yona A Schell, Dina Sokolova, Kevin Etienne Robert Roux, Paul Falthansl-Scheinecker, Giorgio Fabris, Devashish C Shah, et al. “Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting–Superconducting Devices.” Applied Physics Letters. AIP Publishing, 2026. https://doi.org/10.1063/5.0333142. ieee: M. Borovkov et al., “Low-noise quantum dots in ultra-shallow Ge/SiGe heterostructures for prototyping hybrid semiconducting–superconducting devices,” Applied Physics Letters, vol. 129, no. 3. AIP Publishing, 2026. ista: Borovkov M, Schell YA, Sokolova D, Roux KER, Falthansl-Scheinecker P, Fabris G, Shah DC, Saez Mollejo J, Previdi R, Taha I, Genç A, Arbiol J, Calcaterra S, Oliveira ADC, Chrastina D, Isella G, Bubis A, Katsaros G. 2026. Low-noise quantum dots in ultra-shallow Ge/SiGe heterostructures for prototyping hybrid semiconducting–superconducting devices. Applied Physics Letters. 129(3), 033505. mla: Borovkov, Maksim, et al. “Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting–Superconducting Devices.” Applied Physics Letters, vol. 129, no. 3, 033505, AIP Publishing, 2026, doi:10.1063/5.0333142. short: M. Borovkov, Y.A. Schell, D. Sokolova, K.E.R. Roux, P. Falthansl-Scheinecker, G. Fabris, D.C. Shah, J. Saez Mollejo, R. Previdi, I. Taha, A. Genç, J. Arbiol, S. Calcaterra, A.D.C. Oliveira, D. Chrastina, G. Isella, A. Bubis, G. Katsaros, Applied Physics Letters 129 (2026). corr_author: '1' das_tickbox: '1' dataavailabilitystatement: The data that support the findings of this study are openly available in Institute of Science and Technology repository at http://doi.org/10.15479/AT-ISTA-22242, Ref. 50. date_created: 2026-08-02T22:01:53Z date_published: 2026-07-20T00:00:00Z date_updated: 2026-08-03T11:08:39Z day: '20' department: - _id: GeKa - _id: GradSch - _id: NanoFab doi: 10.1063/5.0333142 external_id: arxiv: - '2602.21363' intvolume: ' 129' issue: '3' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.48550/arXiv.2602.21363 month: '07' oa: 1 oa_version: Preprint project: - _id: bdc2ca30-d553-11ed-ba76-cf164a5bb811 grant_number: '101115315' name: Quantum bits with Kitaev Transmons - _id: 34a66131-11ca-11ed-8bc3-a31681c6b03e grant_number: F8606 name: 'Center for Correlated Quantum Materials and Solid State Quantum Systems: Conventional and unconventional topological superconductors' - _id: 5b9e579c-ab3d-11f0-914f-88754c5b5a3f grant_number: PAT 7682124 name: Superconducting spin qubits in planar Ge - _id: bd8bd29e-d553-11ed-ba76-f0070d4b237a grant_number: P36507 name: Merging spin and superconducting qubits in planar Ge - _id: 8ea8abf7-16d5-11f0-9cad-c41e56ec8bb3 grant_number: '101150858' name: Realization and Manipulation of a Planar hybrid superconducting Andreev spin qubit in Germanium publication: Applied Physics Letters publication_identifier: eissn: - 1077-3118 issn: - 0003-6951 publication_status: published publisher: AIP Publishing quality_controlled: '1' related_material: record: - id: '22242' relation: research_data status: public researchdata_availability: yes scopus_import: '1' status: public supplementarymaterial: yes title: Low-noise quantum dots in ultra-shallow Ge/SiGe heterostructures for prototyping hybrid semiconducting–superconducting devices type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 129 year: '2026' ... --- DOAJ_listed: '1' OA_place: publisher OA_type: gold PlanS_conform: '1' _id: '22618' abstract: - lang: eng text: "We use a function field version of the circle method to prove that a positive proportion of elements in \U0001D53D\U0001D45E⁡[\U0001D461] are representable as a sum of three cubes of minimal degree from \U0001D53D\U0001D45E⁡[\U0001D461], assuming a suitable form of the Ratios Conjecture and that char⁡(\U0001D53D\U0001D45E) >3. The analogue of this conjecture for quadratic Dirichlet L-functions is known for large fixed q, via recent developments in homological stability." acknowledgement: While working on this paper the first two authors were supported by FWF grant (DOI 10.55776/P36278) and the third author was supported by the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 101034413, and by the National Science and Technology Council Project Grant 114-2115-M-001-010-MY2. article_number: e112 article_processing_charge: Yes article_type: original arxiv: 1 author: - first_name: Timothy D full_name: Browning, Timothy D id: 35827D50-F248-11E8-B48F-1D18A9856A87 last_name: Browning orcid: 0000-0002-8314-0177 - first_name: Jakob full_name: Glas, Jakob id: d6423cba-dc74-11ea-a0a7-ee61689ff5fb last_name: Glas - first_name: Victor full_name: Wang, Victor id: 76096395-aea4-11ed-a680-ab8ebbd3f1b9 last_name: Wang orcid: 0000-0002-0704-7026 citation: ama: Browning TD, Glas J, Wang V. Sums of three cubes over a function field. Forum of Mathematics Sigma. 2026;14. doi:10.1017/fms.2026.10259 apa: Browning, T. D., Glas, J., & Wang, V. (2026). Sums of three cubes over a function field. Forum of Mathematics Sigma. Cambridge University Press. https://doi.org/10.1017/fms.2026.10259 chicago: Browning, Timothy D, Jakob Glas, and Victor Wang. “Sums of Three Cubes over a Function Field.” Forum of Mathematics Sigma. Cambridge University Press, 2026. https://doi.org/10.1017/fms.2026.10259. ieee: T. D. Browning, J. Glas, and V. Wang, “Sums of three cubes over a function field,” Forum of Mathematics Sigma, vol. 14. Cambridge University Press, 2026. ista: Browning TD, Glas J, Wang V. 2026. Sums of three cubes over a function field. Forum of Mathematics Sigma. 14, e112. mla: Browning, Timothy D., et al. “Sums of Three Cubes over a Function Field.” Forum of Mathematics Sigma, vol. 14, e112, Cambridge University Press, 2026, doi:10.1017/fms.2026.10259. short: T.D. Browning, J. Glas, V. Wang, Forum of Mathematics Sigma 14 (2026). corr_author: '1' das_tickbox: '0' date_created: 2026-08-02T22:01:52Z date_published: 2026-07-22T00:00:00Z date_updated: 2026-08-03T12:13:59Z day: '22' ddc: - '500' department: - _id: TiBr - _id: GradSch doi: 10.1017/fms.2026.10259 ec_funded: 1 external_id: arxiv: - '2402.07146' file: - access_level: open_access checksum: e92a762e03f832bdca8c106a9a88ef9b content_type: application/pdf creator: dernst date_created: 2026-08-03T12:12:03Z date_updated: 2026-08-03T12:12:03Z file_id: '22636' file_name: 2026_ForumMathematics_Browning.pdf file_size: 810718 relation: main_file success: 1 file_date_updated: 2026-08-03T12:12:03Z has_accepted_license: '1' intvolume: ' 14' language: - iso: eng month: '07' oa: 1 oa_version: Published Version project: - _id: bd8a4fdc-d553-11ed-ba76-80a0167441a3 grant_number: P36278 name: Rational curves via function field analytic number theory - _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c call_identifier: H2020 grant_number: '101034413' name: 'IST-BRIDGE: International postdoctoral program' publication: Forum of Mathematics Sigma publication_identifier: eissn: - 2050-5094 publication_status: published publisher: Cambridge University Press quality_controlled: '1' researchdata_availability: no scopus_import: '1' status: public supplementarymaterial: no title: Sums of three cubes over a function field tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 14 year: '2026' ... --- OA_place: repository _id: '22242' abstract: - lang: eng text: This deposit contains the data and analysis code accompanying the publication "Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting–Superconducting Devices" (Borovkov et al.). The deposit includes the raw transport and current-noise measurements of three gate-defined quantum-dot devices as QCodes SQLite databases, the master table of the charge-noise (flank-method) analysis with the pointers linking every analyzed PSD trace to the raw data, the toy-model noise simulation datasets behind the supplementary figures, the archived analysis figures (PSD fits and lever-arm extractions), and the Python code reproducing the full analysis and all figures. The code is also maintained at https://github.com/ISTA-Nanoelectronics/noise_paper_public; instructions are provided in the README files. acknowledged_ssus: - _id: M-Shop - _id: NanoFab article_processing_charge: No author: - first_name: Maksim full_name: Borovkov, Maksim id: 1fd0975f-8b61-11ed-b69e-d149334f28c5 last_name: Borovkov citation: ama: Borovkov M. Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting-Superconducting Devices. 2026. doi:10.15479/AT-ISTA-22242 apa: Borovkov, M. (2026). Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting-Superconducting Devices. Institute of Science and Technology Austria. https://doi.org/10.15479/AT-ISTA-22242 chicago: Borovkov, Maksim. “Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting-Superconducting Devices.” Institute of Science and Technology Austria, 2026. https://doi.org/10.15479/AT-ISTA-22242. ieee: M. Borovkov, “Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting-Superconducting Devices.” Institute of Science and Technology Austria, 2026. ista: Borovkov M. 2026. Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting-Superconducting Devices, Institute of Science and Technology Austria, 10.15479/AT-ISTA-22242. mla: Borovkov, Maksim. Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting-Superconducting Devices. Institute of Science and Technology Austria, 2026, doi:10.15479/AT-ISTA-22242. short: M. Borovkov, (2026). contributor: - contributor_type: contact_person first_name: Maksim id: 1fd0975f-8b61-11ed-b69e-d149334f28c5 last_name: Borovkov corr_author: '1' date_created: 2026-07-04T17:32:27Z date_published: 2026-07-04T00:00:00Z date_updated: 2026-08-03T11:08:38Z day: '04' ddc: - '530' department: - _id: GradSch - _id: GeKa doi: 10.15479/AT-ISTA-22242 doi_confirm: '1' file: - access_level: open_access checksum: 2a1ea297e01a7a202a6b144d69a46eef content_type: application/x-zip-compressed creator: mborovko date_created: 2026-07-04T17:28:49Z date_updated: 2026-07-04T17:28:49Z file_id: '22243' file_name: noise_paper_public_deposit.zip file_size: 3082596099 relation: main_file success: 1 file_date_updated: 2026-07-04T17:28:49Z has_accepted_license: '1' month: '07' oa: 1 oa_version: Published Version project: - _id: bdc2ca30-d553-11ed-ba76-cf164a5bb811 grant_number: '101115315' name: Quantum bits with Kitaev Transmons - _id: 34a66131-11ca-11ed-8bc3-a31681c6b03e grant_number: F8606 name: 'Center for Correlated Quantum Materials and Solid State Quantum Systems: Conventional and unconventional topological superconductors' - _id: bd8bd29e-d553-11ed-ba76-f0070d4b237a grant_number: P36507 name: Merging spin and superconducting qubits in planar Ge - _id: 8ea8abf7-16d5-11f0-9cad-c41e56ec8bb3 grant_number: '101150858' name: Realization and Manipulation of a Planar hybrid superconducting Andreev spin qubit in Germanium - _id: 5b9e579c-ab3d-11f0-914f-88754c5b5a3f grant_number: PAT 7682124 name: Superconducting spin qubits in planar Ge publisher: Institute of Science and Technology Austria related_material: link: - relation: research_data url: https://github.com/ISTA-Nanoelectronics/noise_paper_public record: - id: '22619' relation: used_in_publication status: public status: public title: Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting-Superconducting Devices tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: research_data user_id: 68b8ca59-c5b3-11ee-8790-cd641c68093d year: '2026' ... --- DOAJ_listed: '1' OA_place: publisher OA_type: gold _id: '22449' abstract: - lang: eng text: Transpiration (T) connects water, energy, and carbon cycles within ecosystems. While T has often been reported to increase with soil warming, underlying reasons remain poorly understood. Here, using a mechanistic ecohydrological model, T&C‐BG, we simulated T responses to soil warming at 30 sites spanning various biomes and climates. Consistent with observations, the numerical model reproduces negative, insignificant, and predominantly positive T responses under soil warming. Numerical results show that soil warming generally increases T for sites with a small Bowen ratio. The main mechanisms leading to positive T responses to soil warming are complex changes in energy partitioning with modifications of canopy surface temperature and aerodynamic, stomatal, and leaf boundary layer conductance. However, soil warming can also affect phenology, which might result in either increased or decreased T. Our findings shed light on how T changes with warmer soil and help interpret outcomes of warming experiments. article_number: e2025GL120046 article_processing_charge: No article_type: letter_note author: - first_name: Zhaoyang full_name: Luo, Zhaoyang last_name: Luo - first_name: Jianning full_name: Ren, Jianning last_name: Ren - first_name: Qi full_name: Zhuang, Qi last_name: Zhuang - first_name: Simone full_name: Fatichi, Simone id: cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6 last_name: Fatichi citation: ama: 'Luo Z, Ren J, Zhuang Q, Fatichi S. Transpiration changes with soil warming: Insights from a mechanistic model. Geophysical Research Letters. 2026;53(8). doi:10.1029/2025gl120046' apa: 'Luo, Z., Ren, J., Zhuang, Q., & Fatichi, S. (2026). Transpiration changes with soil warming: Insights from a mechanistic model. Geophysical Research Letters. American Geophysical Union. https://doi.org/10.1029/2025gl120046' chicago: 'Luo, Zhaoyang, Jianning Ren, Qi Zhuang, and Simone Fatichi. “Transpiration Changes with Soil Warming: Insights from a Mechanistic Model.” Geophysical Research Letters. American Geophysical Union, 2026. https://doi.org/10.1029/2025gl120046.' ieee: 'Z. Luo, J. Ren, Q. Zhuang, and S. Fatichi, “Transpiration changes with soil warming: Insights from a mechanistic model,” Geophysical Research Letters, vol. 53, no. 8. American Geophysical Union, 2026.' ista: 'Luo Z, Ren J, Zhuang Q, Fatichi S. 2026. Transpiration changes with soil warming: Insights from a mechanistic model. Geophysical Research Letters. 53(8), e2025GL120046.' mla: 'Luo, Zhaoyang, et al. “Transpiration Changes with Soil Warming: Insights from a Mechanistic Model.” Geophysical Research Letters, vol. 53, no. 8, e2025GL120046, American Geophysical Union, 2026, doi:10.1029/2025gl120046.' short: Z. Luo, J. Ren, Q. Zhuang, S. Fatichi, Geophysical Research Letters 53 (2026). das_tickbox: '1' date_created: 2026-07-27T12:30:23Z date_published: 2026-04-28T00:00:00Z date_updated: 2026-08-03T13:37:39Z day: '28' ddc: - '550' doi: 10.1029/2025gl120046 extern: '1' has_accepted_license: '1' intvolume: ' 53' issue: '8' language: - iso: eng main_file_link: - open_access: '1' url: ' https://doi.org/10.1029/2025GL120046' month: '04' oa: 1 oa_version: Published Version publication: Geophysical Research Letters publication_identifier: eissn: - 1944-8007 issn: - 0094-8276 publication_status: published publisher: American Geophysical Union quality_controlled: '1' scopus_import: '1' status: public title: 'Transpiration changes with soil warming: Insights from a mechanistic model' tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 53 year: '2026' ... --- DOAJ_listed: '1' OA_place: publisher OA_type: gold _id: '22480' abstract: - lang: eng text: "Background:\r\nThe spatial distribution of tree canopies influences ecological functions and residents’ exposure to green spaces. Although several studies have examined green space configuration at neighborhood scales, evidence on tree canopy configuration at the municipal scale, an operational unit for urban planning, remains limited.\r\nMethods:\r\nWe conducted a nationwide ecological study of 2,136 Swiss municipalities. Tree canopy coverage (PLAND), aggregation (AI, reflecting how tightly green patches are grouped together), patch density (PD, a measure of fragmentation), and area-weighted mean shape index (SHAPE_AM, a measure of shape complexity) were derived from 1-m canopy maps within municipality-specific populated areas. Natural-cause, cardiovascular, and cancer mortality (2017–2019) were obtained from the Swiss National Cohort. Fully adjusted negative binomial regression models estimated associations between canopy metric and mortality for each IQR increase in the metrics.\r\nResults:\r\nHolding configuration constant, each IQR increase in canopy coverage (∼18%) was associated with a 3.6% [B: −0.036; 95% CI: −0.078 – 0.005] reduction in cardiovascular mortality. Higher aggregation corresponded to a 4.3% [B: 0.043; 95% CI: 0.026–0.061], an 8.9% [B: 0.089; 95% CI: 0.059–0.119], and a 2.1% [B: 0.021; 95% CI: 0–0.042] higher number of natural-cause, cardiovascular, and cancer deaths respectively. Higher fragmentation was associated with a 3.3% [B: 0.033; 95% CI: 0.016–0.050], a 4.9% [B: 0.049; 95% CI: 0.020–0.078], and a 2.2% [B: 0.022; 95% CI: 0.001–0.043] increase in these causes respectively. No meaningful associations were observed between shape complexity and any mortality outcomes. Associations for aggregation and fragmentation were generally stronger in highly urbanized municipalities.\r\nConclusions:\r\nAt the municipal scale, mortality was lower where tree canopy was distributed across several moderately sized, spatially balanced patches rather than highly aggregated or highly fragmented structures. These findings suggest that urban greening strategies should optimize its spatial configuration to maximize health benefits." article_number: '110188' article_processing_charge: No article_type: original author: - first_name: Dengkai full_name: Chi, Dengkai last_name: Chi - first_name: Gabriele full_name: Manoli, Gabriele last_name: Manoli - first_name: Jun full_name: Yang, Jun last_name: Yang - first_name: Daniel full_name: Richards, Daniel last_name: Richards - first_name: Amy full_name: Hahs, Amy last_name: Hahs - first_name: Brenda full_name: Lin, Brenda last_name: Lin - first_name: Mark J. full_name: McDonnell, Mark J. last_name: McDonnell - first_name: Ye full_name: Zhang, Ye last_name: Zhang - first_name: Yue full_name: Zhu, Yue last_name: Zhu - first_name: Yeshan full_name: Qiu, Yeshan last_name: Qiu - first_name: Jing full_name: Wang, Jing last_name: Wang - first_name: Xing full_name: Zheng, Xing last_name: Zheng - first_name: Paolo full_name: Burlando, Paolo last_name: Burlando - first_name: Simone full_name: Fatichi, Simone id: cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6 last_name: Fatichi - first_name: Puay Yok full_name: Tan, Puay Yok last_name: Tan citation: ama: 'Chi D, Manoli G, Yang J, et al. Tree canopy configuration and Swiss adult mortality at the municipal level: A nationwide ecological study. Environment International. 2026;209. doi:10.1016/j.envint.2026.110188' apa: 'Chi, D., Manoli, G., Yang, J., Richards, D., Hahs, A., Lin, B., … Tan, P. Y. (2026). Tree canopy configuration and Swiss adult mortality at the municipal level: A nationwide ecological study. Environment International. Elsevier. https://doi.org/10.1016/j.envint.2026.110188' chicago: 'Chi, Dengkai, Gabriele Manoli, Jun Yang, Daniel Richards, Amy Hahs, Brenda Lin, Mark J. McDonnell, et al. “Tree Canopy Configuration and Swiss Adult Mortality at the Municipal Level: A Nationwide Ecological Study.” Environment International. Elsevier, 2026. https://doi.org/10.1016/j.envint.2026.110188.' ieee: 'D. Chi et al., “Tree canopy configuration and Swiss adult mortality at the municipal level: A nationwide ecological study,” Environment International, vol. 209. Elsevier, 2026.' ista: 'Chi D, Manoli G, Yang J, Richards D, Hahs A, Lin B, McDonnell MJ, Zhang Y, Zhu Y, Qiu Y, Wang J, Zheng X, Burlando P, Fatichi S, Tan PY. 2026. Tree canopy configuration and Swiss adult mortality at the municipal level: A nationwide ecological study. Environment International. 209, 110188.' mla: 'Chi, Dengkai, et al. “Tree Canopy Configuration and Swiss Adult Mortality at the Municipal Level: A Nationwide Ecological Study.” Environment International, vol. 209, 110188, Elsevier, 2026, doi:10.1016/j.envint.2026.110188.' short: D. Chi, G. Manoli, J. Yang, D. Richards, A. Hahs, B. Lin, M.J. McDonnell, Y. Zhang, Y. Zhu, Y. Qiu, J. Wang, X. Zheng, P. Burlando, S. Fatichi, P.Y. Tan, Environment International 209 (2026). das_tickbox: '1' date_created: 2026-07-27T12:30:23Z date_published: 2026-03-01T00:00:00Z date_updated: 2026-08-03T14:17:29Z day: '01' ddc: - '550' doi: 10.1016/j.envint.2026.110188 extern: '1' external_id: pmid: - '41812348' has_accepted_license: '1' intvolume: ' 209' keyword: - Aggregation - Fragmentation - Green space exposure - Green space morphology - Green space structure - Landscape metrics - Shape complexity language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1016/j.envint.2026.110188 month: '03' oa: 1 oa_version: Published Version pmid: 1 publication: Environment International publication_identifier: eissn: - 1873-6750 issn: - 0160-4120 publication_status: published publisher: Elsevier quality_controlled: '1' scopus_import: '1' status: public title: 'Tree canopy configuration and Swiss adult mortality at the municipal level: A nationwide ecological study' tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 209 year: '2026' ... --- OA_place: publisher OA_type: hybrid PlanS_conform: '1' _id: '22645' abstract: - lang: eng text: Nanocrystal superlattices are commonly formed by changing concentration, solvent conditions, or particle surface chemistry. Although effective, these approaches alter multiple contributions to the interparticle potential simultaneously, making it difficult to isolate the interactions responsible for ordering or to control assembly in chemically complex environments. Here, we show that oligomeric species present in a nanocrystal reaction medium drive superlattice formation through a depletion mechanism. Using PbTe nanocrystals as a model system, we identify Pb–oleate oligomers in the crude reaction mixture, characterize their solution structure, and quantify their contribution to the interparticle potential, establishing depletion as the dominant short-range interaction governing spontaneous body-centered cubic superlattice formation. We then confirm the depletion origin of ordering by showing that varying depletant concentration predictably shifts the order–disorder boundary and produces a thermally reversible transition between dispersed and ordered states ─ behavior that is inconsistent with van der Waals or ligand-mediated mechanisms but is a direct consequence of depletion control. Having established and validated the mechanism, we demonstrate that the same depletion framework can be deliberately activated in purified dispersions and transferred across nanocrystal systems of different composition and shape, including anisotropic and binary assemblies. These results establish precursor-derived depletion as a general and chemically grounded mechanism for nanocrystal superlattice formation, and show that collective ordering can be programmed through the surrounding medium rather than through particle surface modification. acknowledged_ssus: - _id: EM-Fac - _id: NMR - _id: LifeSc acknowledgement: ISTA and the Werner Siemens Foundation financially supported this work. The Scientific Service Units (SSU) of ISTA supported this research through resources provided by the Electron Microscopy Facility (EMF), NMR Facility, and the Lab Support Facility (LSF). M.E. acknowledges financial support from Deutsche Forschungsgemeinschaft through Collaborative Research Centre 1411. We thank Dr. Tommaso Constanzo and Tobias Kleinhanns for assistance with high-quality electron microscope image acquisition, Dr. Jeonghyun Park for providing NCs, Dr. Mariano Calcabrini for assistance with the NMR study, and Prof. Jonathan De Roo for fruitful discussions. This work benefited from the use of the SasView application, originally developed under NSF award DMR-0520547. SasView contains code developed with funding from the European Union’s Horizon 2020 research and innovation program under the SINE2020 project, grant agreement No. 654000. article_processing_charge: Yes (via OA deal) article_type: original author: - first_name: Seungho full_name: Lee, Seungho id: BB243B88-D767-11E9-B658-BC13E6697425 last_name: Lee orcid: 0000-0002-6962-8598 - first_name: Daniel full_name: Balazs, Daniel id: 302BADF6-85FC-11EA-9E3B-B9493DDC885E last_name: Balazs orcid: 0000-0001-7597-043X - first_name: Aiswarya full_name: Rayaroth Puthiyaveettil, Aiswarya id: 8aceb01b-8972-11ed-ae7b-d5fe53775add last_name: Rayaroth Puthiyaveettil - first_name: Sharona full_name: Horta, Sharona id: 03a7e858-01b1-11ec-8b71-99ae6c4a05bc last_name: Horta - first_name: Carl Peter full_name: Goodrich, Carl Peter id: EB352CD2-F68A-11E9-89C5-A432E6697425 last_name: Goodrich orcid: 0000-0002-1307-5074 - first_name: Michael full_name: Engel, Michael last_name: Engel - first_name: Ihor full_name: Cherniukh, Ihor id: d03b62b2-5976-11ef-a8d7-9525504b7895 last_name: Cherniukh - first_name: Maria full_name: Ibáñez, Maria id: 43C61214-F248-11E8-B48F-1D18A9856A87 last_name: Ibáñez orcid: 0000-0001-5013-2843 citation: ama: Lee S, Balazs D, Rayaroth Puthiyaveettil A, et al. Reaction medium asan architect of nanocrystal superlattices. Journal of the AmericanChemical Society. 2026;148(29):31245-31252. doi:10.1021/jacs.6c07859 apa: Lee, S., Balazs, D., Rayaroth Puthiyaveettil, A., Horta, S., Goodrich, C. P., Engel, M., … Ibáñez, M. (2026). Reaction medium asan architect of nanocrystal superlattices. Journal of the AmericanChemical Society. American Chemical Society. https://doi.org/10.1021/jacs.6c07859 chicago: Lee, Seungho, Daniel Balazs, Aiswarya Rayaroth Puthiyaveettil, Sharona Horta, Carl Peter Goodrich, Michael Engel, Ihor Cherniukh, and Maria Ibáñez. “Reaction Medium Asan Architect of Nanocrystal Superlattices.” Journal of the AmericanChemical Society. American Chemical Society, 2026. https://doi.org/10.1021/jacs.6c07859. ieee: S. Lee et al., “Reaction medium asan architect of nanocrystal superlattices,” Journal of the AmericanChemical Society, vol. 148, no. 29. American Chemical Society, pp. 31245–31252, 2026. ista: Lee S, Balazs D, Rayaroth Puthiyaveettil A, Horta S, Goodrich CP, Engel M, Cherniukh I, Ibáñez M. 2026. Reaction medium asan architect of nanocrystal superlattices. Journal of the AmericanChemical Society. 148(29), 31245–31252. mla: Lee, Seungho, et al. “Reaction Medium Asan Architect of Nanocrystal Superlattices.” Journal of the AmericanChemical Society, vol. 148, no. 29, American Chemical Society, 2026, pp. 31245–52, doi:10.1021/jacs.6c07859. short: S. Lee, D. Balazs, A. Rayaroth Puthiyaveettil, S. Horta, C.P. Goodrich, M. Engel, I. Cherniukh, M. Ibáñez, Journal of the AmericanChemical Society 148 (2026) 31245–31252. corr_author: '1' das_tickbox: '0' date_created: 2026-08-04T06:29:31Z date_published: 2026-07-15T00:00:00Z date_updated: 2026-08-04T06:47:13Z day: '15' ddc: - '540' department: - _id: MaIb - _id: LifeSc - _id: GradSch - _id: CaGo doi: 10.1021/jacs.6c07859 external_id: pmid: - '42532904' file: - access_level: open_access checksum: 063314ae5ac4225ebd4436aa8707d113 content_type: application/pdf creator: dernst date_created: 2026-08-04T06:40:17Z date_updated: 2026-08-04T06:40:17Z file_id: '22646' file_name: 2026_JACS_Lee.pdf file_size: 6564594 relation: main_file success: 1 file_date_updated: 2026-08-04T06:40:17Z has_accepted_license: '1' intvolume: ' 148' issue: '29' language: - iso: eng month: '07' oa: 1 oa_version: Published Version page: 31245-31252 pmid: 1 project: - _id: 9B8F7476-BA93-11EA-9121-9846C619BF3A name: 'HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery' publication: Journal of the AmericanChemical Society publication_identifier: eissn: - 1520-5126 issn: - 0002-7863 publication_status: published publisher: American Chemical Society quality_controlled: '1' researchdata_availability: no scopus_import: '1' status: public supplementarymaterial: yes title: Reaction medium asan architect of nanocrystal superlattices tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 148 year: '2026' ... --- OA_place: publisher OA_type: hybrid PlanS_conform: '1' _id: '22642' abstract: - lang: eng text: Continuously operating atom-light interfaces represent a key prerequisite for steady-state quantum sensors and efficient quantum processors. Here, we demonstrate continuous accumulation of sub-Doppler-cooled atoms in a shallow intracavity dipole trap, realizing this regime. The key ingredient is a light-shift manipulation that creates spatially varying cooling parameters, enabling efficient capture and accumulation of atoms within a cavity mode. Demonstrated with rubidium atoms, a continuous flux from a source cell is funneled through the magneto-optical trap into the cavity mode, where the atoms are cooled and maintained below 10µK in steady state without time-sequenced operation. We characterize the resulting continuously maintained ensemble of millions of atoms and its collective coupling to the cavity field, establishing a route toward continuously operated cavity-QED systems and long-duration atomic and hybrid quantum sensors. acknowledgement: "The authors thank Vyacheslav Li for his earlier contributions to the development of the setup utilized in this work.\r\nThis work was supported by the Institute of Science and Technology Austria (ISTA); E.G. was supported by the European Research Council under Grant No. 101087907 (ERC CoG\r\nQuHAMP)." article_number: '023302' article_processing_charge: Yes (via OA deal) article_type: original arxiv: 1 author: - first_name: Edward-Fulbright full_name: Gheorghita, Edward-Fulbright id: e664a051-133f-11ed-8f02-a05999ad0822 last_name: Gheorghita - first_name: Sebastian full_name: Wald, Sebastian id: 133F200A-B015-11E9-AD41-0EDAE5697425 last_name: Wald orcid: 0000-0002-5869-1604 - first_name: Andrea full_name: Pupić, Andrea id: ef9c50a4-5335-11ef-8b9b-8ce03e6380ed last_name: Pupić - first_name: Onur full_name: Hosten, Onur id: 4C02D85E-F248-11E8-B48F-1D18A9856A87 last_name: Hosten orcid: 0000-0002-2031-204X citation: ama: Gheorghita E-F, Wald S, Pupić A, Hosten O. Continuous accumulation of cold atoms in an optical cavity. Physical Review A. 2026;114(2). doi:10.1103/71f2-sq4p apa: Gheorghita, E.-F., Wald, S., Pupić, A., & Hosten, O. (2026). Continuous accumulation of cold atoms in an optical cavity. Physical Review A. American Physical Society. https://doi.org/10.1103/71f2-sq4p chicago: Gheorghita, Edward-Fulbright, Sebastian Wald, Andrea Pupić, and Onur Hosten. “Continuous Accumulation of Cold Atoms in an Optical Cavity.” Physical Review A. American Physical Society, 2026. https://doi.org/10.1103/71f2-sq4p. ieee: E.-F. Gheorghita, S. Wald, A. Pupić, and O. Hosten, “Continuous accumulation of cold atoms in an optical cavity,” Physical Review A, vol. 114, no. 2. American Physical Society, 2026. ista: Gheorghita E-F, Wald S, Pupić A, Hosten O. 2026. Continuous accumulation of cold atoms in an optical cavity. Physical Review A. 114(2), 023302. mla: Gheorghita, Edward-Fulbright, et al. “Continuous Accumulation of Cold Atoms in an Optical Cavity.” Physical Review A, vol. 114, no. 2, 023302, American Physical Society, 2026, doi:10.1103/71f2-sq4p. short: E.-F. Gheorghita, S. Wald, A. Pupić, O. Hosten, Physical Review A 114 (2026). corr_author: '1' das_tickbox: '1' dataavailabilitystatement: "There are no publicly available research data or software\r\nsupporting this manuscript. Requests for further information\r\nor data should be sent to the authors." date_created: 2026-08-04T05:58:23Z date_published: 2026-08-03T00:00:00Z date_updated: 2026-08-04T06:07:20Z day: '03' ddc: - '530' department: - _id: OnHo - _id: GradSch doi: 10.1103/71f2-sq4p external_id: arxiv: - '2512.14528' file: - access_level: open_access checksum: fdecc394b734b56e1b3b151a816bbe14 content_type: application/pdf creator: dernst date_created: 2026-08-04T06:03:14Z date_updated: 2026-08-04T06:03:14Z file_id: '22643' file_name: 2026_PhysicalReviewA_Gheorghita.pdf file_size: 959463 relation: main_file success: 1 file_date_updated: 2026-08-04T06:03:14Z has_accepted_license: '1' intvolume: ' 114' issue: '2' language: - iso: eng month: '08' oa: 1 oa_version: Published Version project: - _id: bdb2a702-d553-11ed-ba76-f12e3e5a3bc6 grant_number: '101087907' name: 'A quantum hybrid of atoms and milligram-scale pendulums: towards gravitational quantum mechanics' publication: Physical Review A publication_identifier: eissn: - 2469-9934 issn: - 2469-9926 publication_status: published publisher: American Physical Society quality_controlled: '1' researchdata_availability: upon request scopus_import: '1' status: public supplementarymaterial: yes title: Continuous accumulation of cold atoms in an optical cavity tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 114 year: '2026' ... --- OA_place: publisher OA_type: hybrid _id: '22647' abstract: - lang: eng text: "Within the plant endomembrane system, the vesicle coat protein clathrin localizes to the plasma membrane (PM) and the trans-Golgi Network/early endosome (TGN/EE). While the role of clathrin in endocytosis at the PM is well established, its function at TGN/EE, presumably in late secretion (trafficking from the TGN/EE to the cell surface) or en route to the vacuole, is debated. Similarly debated are potential homeostatic mechanisms balancing the trafficking routes, especially endocytosis and late secretion.\r\nWe address these questions in Arabidopsis thaliana using conditional silencing of CLATHRIN HEAVY CHAIN (CHC), conditional overexpression of the clathrin uncoating factor AUXILIN-LIKE1, and secretory mutants.\r\nCHC silencing interferes with trafficking of cargoes destined for the apoplast and the PM, supporting a function of clathrin in late secretion. The secretory cargoes become abnormally rerouted from the TGN/EE to the vacuole. Unlike CHC silencing, overexpression of AUXILIN-LIKE1 selectively inhibits clathrin-mediated endocytosis while secretion continues normally at early points of induction. Conversely, secretory mutants exhibit a reduced PM recruitment of clathrin, and variably, of the TPLATE endocytic component.\r\nTogether, our data show a role of clathrin in secretion and suggest secretion as a fundamental trafficking process to which endocytosis is adjusted by a weak homeostatic mechanism." acknowledgement: 'The authors wish to acknowledge Dr. Paweł Baster for cloning PIN1-GFP-2/pDONR221, Ms. Aline Monzer and Dr. Mingyue Li for help with CHC protein level evaluation, Dr. Michał Rychłowski for help with confocal microscopy, Prof. Ari Pekka Mähönen for sharing the p1R4-pUBQ10:XVE plasmid, and Prof. Ying Gu for sharing seeds of the sec5 mutant. M.A. would like to thank Dr. Xixi Zhang and Prof. Sebastian Bednarek for inspiring discussions. This work was supported by the Taif University Researchers Supporting Project, TURSP-HC2022/02 to JF and SA and Austrian Science Fund (FWF): I 3630-B25 to JF. Open Access funding provided by Institute of Science and Technology Austria.' article_number: nph.71454 article_processing_charge: Yes (via OA deal) article_type: original author: - first_name: Maciek full_name: Adamowski, Maciek id: 45F536D2-F248-11E8-B48F-1D18A9856A87 last_name: Adamowski orcid: 0000-0001-6463-5257 - first_name: Adam full_name: Gackowski, Adam last_name: Gackowski - first_name: Ivana full_name: Matijevic, Ivana id: 83c17ce3-15b2-11ec-abd3-f486545870bd last_name: Matijevic - first_name: Saqer S. full_name: Alotaibi, Saqer S. last_name: Alotaibi - first_name: Jiří full_name: Friml, Jiří id: 4159519E-F248-11E8-B48F-1D18A9856A87 last_name: Friml orcid: 0000-0002-8302-7596 citation: ama: Adamowski M, Gackowski A, Matijevic I, Alotaibi SS, Friml J. The role of clathrin in post‐Golgi secretion in plant cells. New Phytologist. 2026. doi:10.1111/nph.71454 apa: Adamowski, M., Gackowski, A., Matijevic, I., Alotaibi, S. S., & Friml, J. (2026). The role of clathrin in post‐Golgi secretion in plant cells. New Phytologist. Wiley. https://doi.org/10.1111/nph.71454 chicago: Adamowski, Maciek, Adam Gackowski, Ivana Matijevic, Saqer S. Alotaibi, and Jiří Friml. “The Role of Clathrin in Post‐Golgi Secretion in Plant Cells.” New Phytologist. Wiley, 2026. https://doi.org/10.1111/nph.71454. ieee: M. Adamowski, A. Gackowski, I. Matijevic, S. S. Alotaibi, and J. Friml, “The role of clathrin in post‐Golgi secretion in plant cells,” New Phytologist. Wiley, 2026. ista: Adamowski M, Gackowski A, Matijevic I, Alotaibi SS, Friml J. 2026. The role of clathrin in post‐Golgi secretion in plant cells. New Phytologist., nph. 71454. mla: Adamowski, Maciek, et al. “The Role of Clathrin in Post‐Golgi Secretion in Plant Cells.” New Phytologist, nph. 71454, Wiley, 2026, doi:10.1111/nph.71454. short: M. Adamowski, A. Gackowski, I. Matijevic, S.S. Alotaibi, J. Friml, New Phytologist (2026). corr_author: '1' das_tickbox: '1' dataavailabilitystatement: 'Original data associated with this study have been deposited in Dataset S1. The accession nos. of A. thaliana genes used in this study are as follows: CHC1 (AT3G11130), CHC2 (AT3G08530), CLC2 (AT2G40060), TPLATE (AT3G01780), AP2A1 (AT5G22770), DRP1C (AT1G14830), GNOM-LIKE1 (AT5G39500), BEN3/BIG2 (AT3G60860), TMK4 (AT3G23750), PIN1 (AT1G73590), AUXILIN-LIKE1 (AT4G12780), AP1M2 (AT1G60780), ECHIDNA (AT1G09330), SEC5A (AT1G76850), SEC5B (AT1G21170), TUB2 (AT5G62690), and PP2AA3 (AT1G13320).' date_created: 2026-08-04T06:48:41Z date_published: 2026-07-20T00:00:00Z date_updated: 2026-08-04T07:58:27Z day: '20' department: - _id: JiFr - _id: MaLo - _id: GradSch doi: 10.1111/nph.71454 external_id: pmid: - '42477503' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1111/nph.71454 month: '07' oa: 1 oa_version: Published Version pmid: 1 project: - _id: 26538374-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: I03630 name: Molecular mechanisms of endocytic cargo recognition in plants publication: New Phytologist publication_identifier: eissn: - 1469-8137 issn: - 0028-646X publication_status: epub_ahead publisher: Wiley quality_controlled: '1' researchdata_availability: yes scopus_import: '1' status: public supplementarymaterial: yes title: The role of clathrin in post‐Golgi secretion in plant cells type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2026' ... --- OA_place: publisher OA_type: hybrid PlanS_conform: '1' _id: '22639' abstract: - lang: eng text: We present an abstract Dyson expansion for perturbations that are merely relatively form-bounded, and apply it to the polaron problem. For a large class of polaron-type models, including the Fröhlich and Nelson models, we prove that the vacuum expectation value of the heat semi-group is a completely monotone function of the square of the total momentum. Consequently, the ground-state energy is a concave function of the square of the momentum, a result recently proved for the Fröhlich model in [14] using a probabilistic approach via Wiener integrals. acknowledgement: Open access funding provided by Institute of Science and Technology (IST Austria). article_number: '87' article_processing_charge: Yes (via OA deal) article_type: original arxiv: 1 author: - first_name: Davide full_name: Desio, Davide id: ea10a57b-23f6-11ef-9085-80d8596d52ef last_name: Desio orcid: 0000-0001-9840-3809 - first_name: Robert full_name: Seiringer, Robert id: 4AFD0470-F248-11E8-B48F-1D18A9856A87 last_name: Seiringer orcid: 0000-0002-6781-0521 citation: ama: Desio D, Seiringer R. Dyson expansion for form-bounded perturbations and applications to the polaron problem. Letters in Mathematical Physics. 2026;116(4). doi:10.1007/s11005-026-02107-2 apa: Desio, D., & Seiringer, R. (2026). Dyson expansion for form-bounded perturbations and applications to the polaron problem. Letters in Mathematical Physics. Springer Nature. https://doi.org/10.1007/s11005-026-02107-2 chicago: Desio, Davide, and Robert Seiringer. “Dyson Expansion for Form-Bounded Perturbations and Applications to the Polaron Problem.” Letters in Mathematical Physics. Springer Nature, 2026. https://doi.org/10.1007/s11005-026-02107-2. ieee: D. Desio and R. Seiringer, “Dyson expansion for form-bounded perturbations and applications to the polaron problem,” Letters in Mathematical Physics, vol. 116, no. 4. Springer Nature, 2026. ista: Desio D, Seiringer R. 2026. Dyson expansion for form-bounded perturbations and applications to the polaron problem. Letters in Mathematical Physics. 116(4), 87. mla: Desio, Davide, and Robert Seiringer. “Dyson Expansion for Form-Bounded Perturbations and Applications to the Polaron Problem.” Letters in Mathematical Physics, vol. 116, no. 4, 87, Springer Nature, 2026, doi:10.1007/s11005-026-02107-2. short: D. Desio, R. Seiringer, Letters in Mathematical Physics 116 (2026). corr_author: '1' das_tickbox: '0' date_created: 2026-08-03T13:21:14Z date_published: 2026-07-17T00:00:00Z date_updated: 2026-08-04T05:57:21Z day: '17' ddc: - '510' department: - _id: RoSe - _id: GradSch doi: 10.1007/s11005-026-02107-2 external_id: arxiv: - '2512.13443' file: - access_level: open_access checksum: 1b90ff7da16b9604d6fe2c6281493456 content_type: application/pdf creator: dernst date_created: 2026-08-04T05:55:58Z date_updated: 2026-08-04T05:55:58Z file_id: '22641' file_name: 2026_LettersMathPhysics_Desio.pdf file_size: 371840 relation: main_file success: 1 file_date_updated: 2026-08-04T05:55:58Z has_accepted_license: '1' intvolume: ' 116' issue: '4' language: - iso: eng month: '07' oa: 1 oa_version: Published Version publication: Letters in Mathematical Physics publication_identifier: issn: - 1573-0530 publication_status: published publisher: Springer Nature quality_controlled: '1' researchdata_availability: no scopus_import: '1' status: public supplementarymaterial: no title: Dyson expansion for form-bounded perturbations and applications to the polaron problem tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 116 year: '2026' ... --- OA_type: closed access _id: '22638' abstract: - lang: eng text: The one-bond proton-carbon coupling constant (1JCH) is an insightful probe of carbohydrate configuration. Equatorial and axial protons at the C1 position typically exhibit distinct 1JCH values, enabling NMR measurements to distinguish α- and β-configurations in carbohydrates. In principle, such measurements could provide insights into carbohydrates in the cell walls of intact microbes. However, traditionally, these measurements are performed by solution NMR with carbohydrates that were extracted, solubilized and fractionated, leaving the biological relevance of the measurements uncertain. Here, we demonstrate that 1H-detected solid-state NMR with fast magic-angle spinning allows quantitative measurements of 1JCH couplings for mobile capsular polysaccharides, directly on submilligram amounts of pathogenic cells. Our approach is demonstrated on intact cells of the pathogenic yeast Cryptococcus neoformans. High-resolution proton-detected spectra enabled the determination of coupling constants for five mobile polysaccharide units of the cryptococcal capsule, revealing their native configurations and confirming previous solution NMR-based anomeric configuration assignments. acknowledgement: We thank the ANR (ANR-16-CE11-0020-02 to A. Loquet and V.A. and ANR-21-CE17-0032 to V.A.) as well as the Swiss National Science Foundation for early postdoc mobility project P2EZP2_184258 to A. Lends. This work has benefited from the Biophysical and Structural Chemistry Platform at Institut Européen de Chimie et Biologie IECB, Centre National de la Recherche Scientifique CNRS Unité d’Appui et de Recherche UAR 3033, INSERM US001, and the CNRS (IR-RMN FR3050 and Infranalytics FR2054). article_processing_charge: No article_type: original author: - first_name: Alons full_name: Lends, Alons last_name: Lends - first_name: Gaelle full_name: Lamon, Gaelle last_name: Lamon - first_name: Alicia full_name: Vallet, Alicia last_name: Vallet - first_name: Axelle full_name: Grélard, Axelle last_name: Grélard - first_name: Estelle full_name: Morvan, Estelle last_name: Morvan - first_name: Vishukumar full_name: Aimanianda, Vishukumar last_name: Aimanianda - first_name: Paul full_name: Schanda, Paul id: 7B541462-FAF6-11E9-A490-E8DFE5697425 last_name: Schanda orcid: 0000-0002-9350-7606 - first_name: Antoine full_name: Loquet, Antoine last_name: Loquet citation: ama: Lends A, Lamon G, Vallet A, et al. On-cell detection of polysaccharide one-bond1Jch couplings by proton-detected solid-state NMR. Journal of the American Chemical Society. 2026;148(27):28037-28042. doi:10.1021/jacs.6c06064 apa: Lends, A., Lamon, G., Vallet, A., Grélard, A., Morvan, E., Aimanianda, V., … Loquet, A. (2026). On-cell detection of polysaccharide one-bond1Jch couplings by proton-detected solid-state NMR. Journal of the American Chemical Society. American Chemical Society. https://doi.org/10.1021/jacs.6c06064 chicago: Lends, Alons, Gaelle Lamon, Alicia Vallet, Axelle Grélard, Estelle Morvan, Vishukumar Aimanianda, Paul Schanda, and Antoine Loquet. “On-Cell Detection of Polysaccharide One-Bond1Jch Couplings by Proton-Detected Solid-State NMR.” Journal of the American Chemical Society. American Chemical Society, 2026. https://doi.org/10.1021/jacs.6c06064. ieee: A. Lends et al., “On-cell detection of polysaccharide one-bond1Jch couplings by proton-detected solid-state NMR,” Journal of the American Chemical Society, vol. 148, no. 27. American Chemical Society, pp. 28037–28042, 2026. ista: Lends A, Lamon G, Vallet A, Grélard A, Morvan E, Aimanianda V, Schanda P, Loquet A. 2026. On-cell detection of polysaccharide one-bond1Jch couplings by proton-detected solid-state NMR. Journal of the American Chemical Society. 148(27), 28037–28042. mla: Lends, Alons, et al. “On-Cell Detection of Polysaccharide One-Bond1Jch Couplings by Proton-Detected Solid-State NMR.” Journal of the American Chemical Society, vol. 148, no. 27, American Chemical Society, 2026, pp. 28037–42, doi:10.1021/jacs.6c06064. short: A. Lends, G. Lamon, A. Vallet, A. Grélard, E. Morvan, V. Aimanianda, P. Schanda, A. Loquet, Journal of the American Chemical Society 148 (2026) 28037–28042. das_tickbox: '0' date_created: 2026-08-03T13:20:41Z date_published: 2026-06-15T00:00:00Z date_updated: 2026-08-04T05:52:13Z day: '15' department: - _id: PaSc doi: 10.1021/jacs.6c06064 external_id: pmid: - '42377973' intvolume: ' 148' issue: '27' language: - iso: eng month: '06' oa_version: None page: 28037-28042 pmid: 1 publication: Journal of the American Chemical Society publication_identifier: eissn: - 1520-5126 issn: - 0002-7863 publication_status: published publisher: American Chemical Society quality_controlled: '1' researchdata_availability: no scopus_import: '1' status: public supplementarymaterial: yes title: On-cell detection of polysaccharide one-bond1Jch couplings by proton-detected solid-state NMR type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 148 year: '2026' ... --- OA_place: publisher OA_type: hybrid PlanS_conform: '1' _id: '22644' abstract: - lang: eng text: "We analyze the average behavior of various arithmetic functions at the values of degree \U0001D451 binary forms ordered by height, with probability 1. This approach yields averaged versions of the Chowla conjecture and the Bateman–Horn conjecture for random binary forms. Furthermore, we show that the rational Hasse principle holds for almost all Châtelet varieties defined by a fixed norm form of degree \U0001D452 and by varying binary forms of fixed degree \U0001D451, provided \U0001D452 divides \U0001D451. This proves an average version of a conjecture of Colliot-Thélène." acknowledgement: I am deeply grateful to my advisor Tim Browning for suggesting this problem and for the many valuable discussions that shaped this work. I would also like to thank Efthymios Sofos, Matteo Verzobio, and Shuntaro Yamagishi for discussions and insights that contributed to this paper. I am also very grateful to the anonymous referee for their careful reading and for the considerable effort they put into improving the manuscript. article_processing_charge: Yes (via OA deal) article_type: original arxiv: 1 author: - first_name: Yijie full_name: Diao, Yijie id: 7b7eb4ca-eb2c-11ec-b98b-accec0b20c3b last_name: Diao orcid: 0000-0002-4989-5330 citation: ama: Diao Y. Liouville function, von Mangoldt function, and norm forms at random binary forms. Glasgow Mathematical Journal. 2026:1-34. doi:10.1017/s0017089526101074 apa: Diao, Y. (2026). Liouville function, von Mangoldt function, and norm forms at random binary forms. Glasgow Mathematical Journal. Cambridge University Press. https://doi.org/10.1017/s0017089526101074 chicago: Diao, Yijie. “Liouville Function, von Mangoldt Function, and Norm Forms at Random Binary Forms.” Glasgow Mathematical Journal. Cambridge University Press, 2026. https://doi.org/10.1017/s0017089526101074. ieee: Y. Diao, “Liouville function, von Mangoldt function, and norm forms at random binary forms,” Glasgow Mathematical Journal. Cambridge University Press, pp. 1–34, 2026. ista: Diao Y. 2026. Liouville function, von Mangoldt function, and norm forms at random binary forms. Glasgow Mathematical Journal., 1–34. mla: Diao, Yijie. “Liouville Function, von Mangoldt Function, and Norm Forms at Random Binary Forms.” Glasgow Mathematical Journal, Cambridge University Press, 2026, pp. 1–34, doi:10.1017/s0017089526101074. short: Y. Diao, Glasgow Mathematical Journal (2026) 1–34. corr_author: '1' das_tickbox: '0' date_created: 2026-08-04T06:15:04Z date_published: 2026-07-21T00:00:00Z date_updated: 2026-08-04T06:28:01Z day: '21' ddc: - '500' department: - _id: TiBr - _id: GradSch doi: 10.1017/s0017089526101074 external_id: arxiv: - '2506.18065' has_accepted_license: '1' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1017/S0017089526101074 mathsc: - 11N32 - 11N37 - 11D57 - 11G35 month: '07' oa: 1 oa_version: Published Version page: 1-34 publication: Glasgow Mathematical Journal publication_identifier: eissn: - 1469-509X issn: - 0017-0895 publication_status: epub_ahead publisher: Cambridge University Press quality_controlled: '1' researchdata_availability: no scopus_import: '1' status: public supplementarymaterial: no title: Liouville function, von Mangoldt function, and norm forms at random binary forms tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2026' ... --- OA_place: publisher OA_type: gold _id: '21923' abstract: - lang: eng text: "The appearance of simulated natural phenomena heavily depends on the way surfaces are textured. However, applying texture maps to dynamic deformable surfaces presents a significant challenge, due to ever-shifting differences in length scales involved. When these surfaces move and advect the texture along with them, their final appearance degrades as deformed regions dramatically distort their texture map. Modifications to the texture directly at the pixel level in response to the deformation may introduce ghosting artifacts and look unnatural. In the real world, the appearance of surface details on a deforming material changes through the interplay of physical processes such as rupturing, exposure of internal structure, or wrinkling. Motivated by these behaviors, in this work we explore how physical principles can guide the texturing methods based on the measure of surface deformation.\r\nWe present two novel wave-based procedural texturing algorithms which reproduce common physical properties like advection and self-similarity, enabling the plausible animation of deforming objects with extreme texture map distortions. Our algorithms are fully procedural, require no actual physics simulation, and store no state or history of deformation besides the input UV map, making them highly parallelizable on the GPU and efficient enough for real-time applications. We show the versatility of the method by animating physical phenomena with extreme deformations such as flowing lava, stretching putty and outpouring sludge." acknowledged_ssus: - _id: ScienComp acknowledgement: "We thank the anonymous reviewers for their helpful comments, the members of the Visual Computing Group at ISTA for their feedback. We also thank Jonathan Gagnon for their help with running the Lapped Textures codes and SideFX for the Houdini Education software licenses.\r\nImages in Fig. 2 by Kisoulou and Vultured on Unsplash, Michal Jarmoluk and Public Domain Pictures from Pixabay and Hawai‘i Volcanoes NPS on flickr. This research was supported by the Scientific Service Units (SSU) of ISTA through resources provided by Scientific Computing and was funded in part by the European Union (ERC-2021-COG 101045083 CoDiNA)." article_number: '154' article_processing_charge: Yes article_type: original author: - first_name: Aleksei full_name: Kalinov, Aleksei id: 44b7120e-eb97-11eb-a6c2-e1557aa81d02 last_name: Kalinov orcid: 0000-0003-2189-3904 - first_name: Mickaël full_name: Ly, Mickaël id: 6340d7f0-b48d-11eb-b10d-b7487e71d9f1 last_name: Ly - first_name: Christian full_name: Hafner, Christian id: 400429CC-F248-11E8-B48F-1D18A9856A87 last_name: Hafner - first_name: Christopher J full_name: Wojtan, Christopher J id: 3C61F1D2-F248-11E8-B48F-1D18A9856A87 last_name: Wojtan orcid: 0000-0001-6646-5546 citation: ama: Kalinov A, Ly M, Hafner C, Wojtan C. Physics-inspired procedural texturing of extremely deformable surfaces. ACM Transactions on Graphics. 2026;45(4). doi:10.1145/3811353 apa: 'Kalinov, A., Ly, M., Hafner, C., & Wojtan, C. (2026). Physics-inspired procedural texturing of extremely deformable surfaces. ACM Transactions on Graphics. Los Angeles, CA, United States: Association for Computing Machinery. https://doi.org/10.1145/3811353' chicago: Kalinov, Aleksei, Mickaël Ly, Christian Hafner, and Chris Wojtan. “Physics-Inspired Procedural Texturing of Extremely Deformable Surfaces.” ACM Transactions on Graphics. Association for Computing Machinery, 2026. https://doi.org/10.1145/3811353. ieee: A. Kalinov, M. Ly, C. Hafner, and C. Wojtan, “Physics-inspired procedural texturing of extremely deformable surfaces,” ACM Transactions on Graphics, vol. 45, no. 4. Association for Computing Machinery, 2026. ista: Kalinov A, Ly M, Hafner C, Wojtan C. 2026. Physics-inspired procedural texturing of extremely deformable surfaces. ACM Transactions on Graphics. 45(4), 154. mla: Kalinov, Aleksei, et al. “Physics-Inspired Procedural Texturing of Extremely Deformable Surfaces.” ACM Transactions on Graphics, vol. 45, no. 4, 154, Association for Computing Machinery, 2026, doi:10.1145/3811353. short: A. Kalinov, M. Ly, C. Hafner, C. Wojtan, ACM Transactions on Graphics 45 (2026). conference: end_date: 2026-07-23 location: Los Angeles, CA, United States name: 'SIGGRAPH: International Conference and Exhibition on Computer Graphics and Interactive Techniques' start_date: 2026-07-19 corr_author: '1' das_tickbox: '0' date_created: 2026-05-29T13:25:16Z date_published: 2026-07-01T00:00:00Z date_updated: 2026-08-04T09:07:44Z day: '01' ddc: - '006' department: - _id: GradSch - _id: ChWo doi: 10.1145/3811353 file: - access_level: open_access checksum: ea165bf731ddd3045f83878dcb833672 content_type: video/mp4 creator: akalinov date_created: 2026-05-29T13:19:33Z date_updated: 2026-05-29T13:19:33Z file_id: '21924' file_name: tog454-article154-supplemental.mp4 file_size: 77337231 relation: main_file success: 1 - access_level: open_access checksum: 6274cfb15ea5ba7324b74afc7b0d9629 content_type: video/mp4 creator: akalinov date_created: 2026-05-29T13:19:37Z date_updated: 2026-05-29T13:19:37Z file_id: '21925' file_name: tog454-article154-video.mp4 file_size: 226633977 relation: main_file success: 1 - access_level: open_access checksum: 9d41b322a7876be9a3311017b9973183 content_type: application/pdf creator: akalinov date_created: 2026-05-29T13:19:33Z date_updated: 2026-05-29T13:19:33Z file_id: '21926' file_name: tog454-article154-supplemental.pdf file_size: 6793867 relation: main_file success: 1 - access_level: open_access checksum: 51bc60d2de867fbfa570652dec7993b4 content_type: application/pdf creator: akalinov date_created: 2026-05-29T13:19:36Z date_updated: 2026-05-29T13:19:36Z file_id: '21927' file_name: tog454-article154-main-1.pdf file_size: 84173392 relation: main_file success: 1 file_date_updated: 2026-05-29T13:19:37Z has_accepted_license: '1' intvolume: ' 45' issue: '4' keyword: - Procedural animation language: - iso: eng month: '07' oa: 1 oa_version: Published Version project: - _id: 34bc2376-11ca-11ed-8bc3-9a3b3961a088 grant_number: '101045083' name: Computational Discovery of Numerical Algorithms for Animation and Simulation of Natural Phenomena publication: ACM Transactions on Graphics publication_identifier: issn: - 0730-0301 publication_status: published publisher: Association for Computing Machinery quality_controlled: '1' related_material: link: - description: News on ISTA website relation: press_release url: https://ista.ac.at/en/news/infinite-deformation-and-shape-computation/ researchdata_availability: no scopus_import: '1' status: public supplementarymaterial: yes title: Physics-inspired procedural texturing of extremely deformable surfaces tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd volume: 45 year: '2026' ... --- OA_place: publisher OA_type: hybrid _id: '22363' abstract: - lang: eng text: Eukaryotic gene regulation relies on stochastic yet controlled promoter switching, in which genes transition between transcriptionally active and inactive states. Despite the molecular complexity of this process, recent studies have revealed a surprising invariance of the “switching correlation time” (TC)—the characteristic decay time of the autocorrelation function of promoter activity fluctuations—across gene expression levels in multiple genes and organisms. A biophysically plausible explanation for this invariance has so far been lacking. Here, we show that this empirical constraint imposes stringent requirements on minimal yet realistic models of transcriptional regulation. Specifically, reproducing TC–invariance requires regulatory architectures with at least four internal states and nonequilibrium dynamics that break detailed balance. Using Bayesian inference on Drosophila gap gene expression data, we demonstrate that such models i) quantitatively reproduce the observed TC–invariance, ii) remain robust to parameter perturbations, and iii) maximize information transmission from transcription factor concentration to gene expression. Remarkably, the TC-invariant modulation strategy we identify as optimal closely parallels contemporary control-theoretic results on the modulation of stochastic switching systems. Taken together, our results suggest that eukaryotic transcriptional regulation operates in a nonequilibrium regime to balance precision, reaction-rate limitations, and energy dissipation, thereby achieving near-optimal information transmission under fundamental physical constraints. acknowledgement: This work was supported by the French NationalResearch Agency (ANR-20-CE12-0028 “ChroDynE” and ANR-23-CE13-0021“GastruCyp” and ANR-10 LABX-73 “Revive;” all T.G.), and by funding from theEuropean Research Council (ERC-2023-SyG, “Dynatrans,” 101118866, T.G. andG.T.). This work was also supported in part by the U.S. NSF, through the Centerfor the Physics of Biological Function (PHY-1734030, T.G.), and by NIH GrantsR01GM097275, U01DA047730, and U01DK127429 (T.G.) article_number: e2524855123 article_processing_charge: Yes article_type: original author: - first_name: Benjamin full_name: Zoller, Benjamin last_name: Zoller - first_name: Alexis full_name: Benichou, Alexis id: 3a67230c-5fc0-11ef-a673-de9a2ffadafe last_name: Benichou - first_name: Thomas full_name: Gregor, Thomas last_name: Gregor - first_name: Gašper full_name: Tkačik, Gašper id: 3D494DCA-F248-11E8-B48F-1D18A9856A87 last_name: Tkačik orcid: 0000-0002-6699-1455 citation: ama: Zoller B, Benichou A, Gregor T, Tkačik G. Invariant nonequilibrium dynamics in gene regulation optimize information flow. Proceedings of the National Academy of Sciences of the United States of America. 2026;123(28). doi:10.1073/pnas.2524855123 apa: Zoller, B., Benichou, A., Gregor, T., & Tkačik, G. (2026). Invariant nonequilibrium dynamics in gene regulation optimize information flow. Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences. https://doi.org/10.1073/pnas.2524855123 chicago: Zoller, Benjamin, Alexis Benichou, Thomas Gregor, and Gašper Tkačik. “Invariant Nonequilibrium Dynamics in Gene Regulation Optimize Information Flow.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2026. https://doi.org/10.1073/pnas.2524855123. ieee: B. Zoller, A. Benichou, T. Gregor, and G. Tkačik, “Invariant nonequilibrium dynamics in gene regulation optimize information flow,” Proceedings of the National Academy of Sciences of the United States of America, vol. 123, no. 28. National Academy of Sciences, 2026. ista: Zoller B, Benichou A, Gregor T, Tkačik G. 2026. Invariant nonequilibrium dynamics in gene regulation optimize information flow. Proceedings of the National Academy of Sciences of the United States of America. 123(28), e2524855123. mla: Zoller, Benjamin, et al. “Invariant Nonequilibrium Dynamics in Gene Regulation Optimize Information Flow.” Proceedings of the National Academy of Sciences of the United States of America, vol. 123, no. 28, e2524855123, National Academy of Sciences, 2026, doi:10.1073/pnas.2524855123. short: B. Zoller, A. Benichou, T. Gregor, G. Tkačik, Proceedings of the National Academy of Sciences of the United States of America 123 (2026). corr_author: '1' das_tickbox: '1' dataavailabilitystatement: Software code data have been deposited in Institute Pasteur GitHub (https://gitlab.pasteur.fr/tglab/invariantpromoterdynamicspaper) (51). date_created: 2026-07-19T22:01:46Z date_published: 2026-07-14T00:00:00Z date_updated: 2026-08-04T09:21:10Z day: '14' ddc: - '570' department: - _id: GaTk doi: 10.1073/pnas.2524855123 external_id: pmid: - '42406962' file: - access_level: open_access checksum: f4d82dd706ff1629db68d71190288350 content_type: application/pdf creator: dernst date_created: 2026-07-20T13:12:47Z date_updated: 2026-07-20T13:12:47Z file_id: '22376' file_name: 2026_PNAS_Zoller.pdf file_size: 24580098 relation: main_file success: 1 file_date_updated: 2026-07-20T13:12:47Z has_accepted_license: '1' intvolume: ' 123' issue: '28' language: - iso: eng month: '07' oa: 1 oa_version: Published Version pmid: 1 project: - _id: 7bfe6a29-9f16-11ee-852c-c0da5e2045d9 grant_number: '101118866' name: 'Transcription in 4D: the dynamic interplay between chromatin architecture and gene expression in developing pseudo-embryos' publication: Proceedings of the National Academy of Sciences of the United States of America publication_identifier: eissn: - 1091-6490 issn: - 0027-8424 publication_status: published publisher: National Academy of Sciences quality_controlled: '1' related_material: link: - description: News on ISTA website relation: press_release url: https://ista.ac.at/en/news/the-art-of-proper-flickering/ researchdata_availability: yes scopus_import: '1' status: public supplementarymaterial: yes title: Invariant nonequilibrium dynamics in gene regulation optimize information flow tmp: image: /images/cc_by_nc_nd.png legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0) short: CC BY-NC-ND (4.0) type: journal_article user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd volume: 123 year: '2026' ... --- DOAJ_listed: '1' OA_place: publisher OA_type: gold PlanS_conform: '1' _id: '22637' abstract: - lang: eng text: The distribution of entanglement across distant qubits is a central challenge for the operation of scalable quantum computers and large-scale quantum networks. Existing approaches rely on deterministic state transfer, or probabilistic protocols that require active control or measurements and postselection. Here, we demonstrate a fundamentally different, fully autonomous process, where two remote qubits are entangled through their coupling to a quantum-correlated photonic reservoir. In our experiment, a Josephson parametric converter produces a Gaussian, continuous-variable entangled state of propagating microwave fields that drives two spatially separated superconducting transmon qubits into a stationary, discrete-variable entangled state. We also show how qubit tomography unlocks a direct and sensitive verification of two-mode squeezing in the microwave domain. These results establish networks of qubits interfaced with distributed continuous-variable entangled states as a powerful platform for foundational studies and quantum-technology applications. acknowledged_ssus: - _id: M-Shop - _id: NanoFab acknowledgement: We thank A. Trioni and C. N. Borja for assistance in device fabrication, C. Siegele for fruitful discussions, IBM for donating the JPC used in this work, and the MIBA machine shop and the ISTA nanofabrication facility for technical support. This work was funded in part by the Austrian Science Fund (FWF) through the excellence cluster quantA 10.55776/COE1 and the SFB BeyondC 10.55776/F71, as well as the European Union—NextGenerationEU, and ISTA. J. F. and L. K. acknowledge support from the Horizon Europe Program HORIZON-CL4-2022-QUANTUM-01-SGA via Project No. 101113946 OpenSuperQPlus100, and J. F. from the European Research Council No. 101089099 (ERC CoG cQEO). J. A. acknowledges support from the QUANTERA project MOLAR with reference No. PCI2024-153449, funded by MICIU/AEI/10.13039/501100011033 and the European Union. This research is part of the Munich Quantum Valley, which is supported by the Bavarian state government with funds from the Hightech Agenda Bayern Plus. article_number: '031005' article_processing_charge: Yes article_type: original author: - first_name: Alejandro full_name: Andres Juanes, Alejandro id: 7601fd3a-5355-11ee-ae5a-a20ca6f3cfb9 last_name: Andres Juanes - first_name: J. full_name: Agustí, J. last_name: Agustí - first_name: Riya full_name: Sett, Riya id: 2E6D040E-F248-11E8-B48F-1D18A9856A87 last_name: Sett orcid: 0000-0001-7641-8348 - first_name: Elena full_name: Redchenko, Elena id: 2C21D6E8-F248-11E8-B48F-1D18A9856A87 last_name: Redchenko - first_name: Lucky full_name: Kapoor, Lucky id: 84b9700b-15b2-11ec-abd3-831089e67615 last_name: Kapoor orcid: 0000-0001-8319-2148 - first_name: Samarth full_name: Hawaldar, Samarth id: 221708e1-1ff6-11ee-9fa6-85146607433e last_name: Hawaldar orcid: 0000-0002-1965-4309 - first_name: P. full_name: Rabl, P. last_name: Rabl - first_name: Johannes M full_name: Fink, Johannes M id: 4B591CBA-F248-11E8-B48F-1D18A9856A87 last_name: Fink orcid: 0000-0001-8112-028X citation: ama: Andres Juanes A, Agustí J, Sett R, et al. Distributing stationary qubit entanglement through a nonlocal squeezed reservoir. Physical Review X. 2026;16(3). doi:10.1103/r4jt-j39w apa: Andres Juanes, A., Agustí, J., Sett, R., Redchenko, E., Kapoor, L., Hawaldar, S., … Fink, J. M. (2026). Distributing stationary qubit entanglement through a nonlocal squeezed reservoir. Physical Review X. American Physical Society. https://doi.org/10.1103/r4jt-j39w chicago: Andres Juanes, Alejandro, J. Agustí, Riya Sett, Elena Redchenko, Lucky Kapoor, Samarth Hawaldar, P. Rabl, and Johannes M Fink. “Distributing Stationary Qubit Entanglement through a Nonlocal Squeezed Reservoir.” Physical Review X. American Physical Society, 2026. https://doi.org/10.1103/r4jt-j39w. ieee: A. Andres Juanes et al., “Distributing stationary qubit entanglement through a nonlocal squeezed reservoir,” Physical Review X, vol. 16, no. 3. American Physical Society, 2026. ista: Andres Juanes A, Agustí J, Sett R, Redchenko E, Kapoor L, Hawaldar S, Rabl P, Fink JM. 2026. Distributing stationary qubit entanglement through a nonlocal squeezed reservoir. Physical Review X. 16(3), 031005. mla: Andres Juanes, Alejandro, et al. “Distributing Stationary Qubit Entanglement through a Nonlocal Squeezed Reservoir.” Physical Review X, vol. 16, no. 3, 031005, American Physical Society, 2026, doi:10.1103/r4jt-j39w. short: A. Andres Juanes, J. Agustí, R. Sett, E. Redchenko, L. Kapoor, S. Hawaldar, P. Rabl, J.M. Fink, Physical Review X 16 (2026). corr_author: '1' das_tickbox: '1' dataavailabilitystatement: The data that support the findings of this article are openly available https://zenodo.org/records/19099731. date_created: 2026-08-03T13:19:31Z date_published: 2026-07-13T00:00:00Z date_updated: 2026-08-04T09:18:57Z day: '13' ddc: - '530' department: - _id: JoFi - _id: GradSch doi: 10.1103/r4jt-j39w file: - access_level: open_access checksum: 2bab109f975545d096c21dd72c738b6e content_type: application/pdf creator: dernst date_created: 2026-08-04T05:40:41Z date_updated: 2026-08-04T05:40:41Z file_id: '22640' file_name: 2026_PhysicalReviewX_AndresJuanes.pdf file_size: 5301241 relation: main_file success: 1 file_date_updated: 2026-08-04T05:40:41Z has_accepted_license: '1' intvolume: ' 16' issue: '3' language: - iso: eng month: '07' oa: 1 oa_version: Published Version project: - _id: bdb108fd-d553-11ed-ba76-83dc74a9864f grant_number: F07105 name: QUANTUM INFORMATION SYSTEMS BEYOND CLASSICAL CAPABILITIES / P5- Integration of Superconducting Quantum Circuits - _id: bdadfa0d-d553-11ed-ba76-fb85edbd456a grant_number: '101089099' name: 'Cavity Quantum Electro Optics: Microwave photonics with nonclassical states' publication: Physical Review X publication_identifier: eissn: - 2160-3308 publication_status: published publisher: American Physical Society quality_controlled: '1' related_material: link: - description: News on ISTA website relation: press_release url: https://ista.ac.at/en/news/quantum-bath-syncs-distant-qubits/ researchdata_availability: yes scopus_import: '1' status: public supplementarymaterial: yes title: Distributing stationary qubit entanglement through a nonlocal squeezed reservoir tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd volume: 16 year: '2026' ... --- OA_type: closed access _id: '22315' abstract: - lang: eng text: Plant tropisms enable roots to navigate complex soils by responding to directional environmental cues. Biological decay, although central to nutrient cycling, also creates microbially active and potentially hostile niches. In this work, we identified “saprotropism,” a previously unrecognized growth response that enables roots to actively bend away from decaying plant-derived matter. Fungal-driven microbial decomposition released organic acids and formed stable pH gradients in surrounding soil, allowing roots to pinpoint decay without direct contact. Root epidermal cells sensed this acidic gradient through the root meristem growth factor peptide-receptor module, converting external pH asymmetry into asymmetric abscisic acid (ABA) distribution. ABA asymmetry drove microtubule reorganization, which was decoded into decay-avoidant root bending. Together, these findings establish microbial decay–derived chemical gradients as an instructive signal for root navigation and expand the framework of microbe-soil-plant communication. acknowledgement: 'We are grateful to H. Guo and L. Liu (Department of Biology, Southern University of Science and Technology) for providing the rgf1/2/3, rgi1/2/3/4, tpst-1, and pepr1/2 lines. We thank K.-h. Liu (College of Life Science, Northwest A&F University) for generously providing the ABA biosensor nlsABACUS2-400n. We also thank J. Li and J. Chang (School of Life Sciences, Lanzhou University) for providing the ahk2-5/cre1-2, ahp1/2/3, arr16/arr17, and pTCSn::GFP lines. Our thanks further extend to D. Qian, also from the School of Life Sciences at Lanzhou University, for sharing Arabidopsis line pTUB6::mCherry-TUB6. We are grateful to Y. Zhao (CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences) for providing nced3/5, snrk2.2/2.3/2.6, and pyl duodecuple mutants. We also acknowledge the Teaching and Research Core Facility at the College of Life Sciences, Northwest A&F University, particularly N. Fan, for their invaluable technical assistance. We also thank Life Science Research Core Services (LSRCS), Northwest A&F University, for helping with characterization, including CLSM (X. Liu). Fundamental and Interdisciplinary Disciplines Breakthrough Plan of the Ministry of Education of China JYB2025XDXM706 (Y.Z.); Qin Chuangyuan High-level Innovation and Entrepreneurship Talent Program QCYRCXM-2022-237 (Y.Z.); Fundamental Research Funds for the Central Universities K20200168 (Y.Z.); National Natural Science Foundation of China 32570375 (Y.Z.); National Natural Science Foundation of China 32400699 (A.Z.); European Research Council (ERC, CYNIPS) 101142681 (J.F.); Austrian Science Fund (FWF): P 37051-B (J.F.).' article_number: eadw6568 article_processing_charge: No article_type: original author: - first_name: Zhulatai full_name: Bao, Zhulatai last_name: Bao - first_name: Huihui full_name: Wang, Huihui last_name: Wang - first_name: Ai full_name: Zhang, Ai last_name: Zhang - first_name: Ruxi full_name: Gao, Ruxi last_name: Gao - first_name: Wen full_name: Gu, Wen last_name: Gu - first_name: Ni full_name: Fan, Ni last_name: Fan - first_name: Jiří full_name: Friml, Jiří id: 4159519E-F248-11E8-B48F-1D18A9856A87 last_name: Friml orcid: 0000-0002-8302-7596 - first_name: Yuzhou full_name: Zhang, Yuzhou last_name: Zhang citation: ama: Bao Z, Wang H, Zhang A, et al. Roots navigate around decay regions by sensing local pH gradients. Science. 2026;393(6807). doi:10.1126/science.adw6568 apa: Bao, Z., Wang, H., Zhang, A., Gao, R., Gu, W., Fan, N., … Zhang, Y. (2026). Roots navigate around decay regions by sensing local pH gradients. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.adw6568 chicago: Bao, Zhulatai, Huihui Wang, Ai Zhang, Ruxi Gao, Wen Gu, Ni Fan, Jiří Friml, and Yuzhou Zhang. “Roots Navigate around Decay Regions by Sensing Local PH Gradients.” Science. American Association for the Advancement of Science, 2026. https://doi.org/10.1126/science.adw6568. ieee: Z. Bao et al., “Roots navigate around decay regions by sensing local pH gradients,” Science, vol. 393, no. 6807. American Association for the Advancement of Science, 2026. ista: Bao Z, Wang H, Zhang A, Gao R, Gu W, Fan N, Friml J, Zhang Y. 2026. Roots navigate around decay regions by sensing local pH gradients. Science. 393(6807), eadw6568. mla: Bao, Zhulatai, et al. “Roots Navigate around Decay Regions by Sensing Local PH Gradients.” Science, vol. 393, no. 6807, eadw6568, American Association for the Advancement of Science, 2026, doi:10.1126/science.adw6568. short: Z. Bao, H. Wang, A. Zhang, R. Gao, W. Gu, N. Fan, J. Friml, Y. Zhang, Science 393 (2026). das_tickbox: '1' dataavailabilitystatement: All data are available in the manuscript or the supplementary materials. The raw RNA-seq data have been deposited in the NCBI Gene Expression Omnibus (GEO) under accession number GSE315473. Microbiome sequencing data have been deposited in the Sequence Read Archive (SRA) under BioProject number PRJNA1397137. Materials are available upon request from the corresponding author. date_created: 2026-07-13T14:57:10Z date_published: 2026-07-09T00:00:00Z date_updated: 2026-08-04T09:22:49Z day: '09' department: - _id: JiFr doi: 10.1126/science.adw6568 external_id: pmid: - '42424472' intvolume: ' 393' issue: '6807' language: - iso: eng month: '07' oa_version: None pmid: 1 project: - _id: 8f347782-16d5-11f0-9cad-8c19706ee739 grant_number: '101142681' name: Cyclic nucleotides as second messengers in plants - _id: 7bcece63-9f16-11ee-852c-ae94e099eeb6 grant_number: P37051 name: Guanylate cyclase activity of TIR1/AFBs auxin receptors publication: Science publication_identifier: eissn: - 1095-9203 issn: - 0036-8075 publication_status: published publisher: American Association for the Advancement of Science quality_controlled: '1' related_material: link: - description: News on ISTA website relation: press_release url: https://ista.ac.at/en/news/roots-steer-clear-of-plant-rot/ researchdata_availability: yes scopus_import: '1' status: public supplementarymaterial: yes title: Roots navigate around decay regions by sensing local pH gradients type: journal_article user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd volume: 393 year: '2026' ... --- OA_place: publisher OA_type: hybrid PlanS_conform: '1' _id: '22295' abstract: - lang: eng text: 'Despite the functional diversity of over 100 causal genes1,2,3, phenotypic convergence across models may reveal common neurobiological processes in autism spectrum disorder (ASD). Here we profiled 251 samples from 11 monogenic mouse models of ASD using single-nucleus multi-omic sequencing across three developmental stages, both sexes and two brain regions. Despite genetic heterogeneity, ASD-linked mutations converged on perturbations of the radial glial cell lineage. These alterations reflect a transient developmental delay rather than lasting lineage misspecification and resolve by postnatal stages. Molecularly, the largest transcriptional differences emerged in neurons at early postnatal stages. These changes included downregulation of synaptic and ion channel-related genes, consistent with homeostatic adaptation or delayed maturation. Network analysis showed molecular convergence across models within each developmental stage, suggesting that diverse mutations linked to ASD impinge on common, stage-specific processes. Convergence becomes less pronounced by postnatal day 14, highlighting the dynamic nature of ASD-associated changes. Cross-genotype heterogeneity is superimposed on stage-specific effects. Electrophysiology corroborated this pattern: mutants generally showed altered neuronal excitability and synaptic properties with model-specific nuances. Our study also highlighted sex-specific gene expression alterations, with female mice often displaying larger effect sizes than male mice. Together, our findings provide a comprehensive view of developmental cellular and molecular dynamics across models of ASD.' acknowledged_ssus: - _id: Bio - _id: LifeSc acknowledgement: We thank F. Freeman, V. Voronin and M. Ladron de Guevara for technical assistance; A. Stichelberger and S. Liegenfeld for the management of our animal colony; M. Schunn, C. Gold and the Preclinical Facility team for technical assistance; C. Jansen and the Scientific Computing Facility for bioinformatics support and technical assistance; the Biomedical Sequencing Facility at CeMM for assistance with next-generation sequencing; and J. Lin and T. Krausgruber in the laboratory of C. Bock for support with flow cytometry; J. Kirchner for illustrating the multi-omics approach depicted in Fig. 1; and all members of the laboratory of G.N. for their support and discussions. This study was supported by the Scientific Service Units of ISTA through resources provided by the Imaging & Optics Facility and the Laboratory Support Facility. Bulk RNA-seq was performed by the Next Generation Sequencing Facility at Vienna BioCenter Core Facilities, member of the Vienna BioCenter. This work was supported by a European Research Council Consolidator Grant (PR1028ERC02), by SFARI (PR1028SIM02) and by the Austrian Science Fund (PE1028W1232 and PR1028FG1803) to G.N. Open access funding provided by Institute of Science and Technology (IST Austria). article_processing_charge: Yes (via OA deal) article_type: original author: - first_name: Lena A full_name: Schwarz, Lena A id: 29A8453C-F248-11E8-B48F-1D18A9856A87 last_name: Schwarz - first_name: Christoph full_name: Dotter, Christoph id: 4C66542E-F248-11E8-B48F-1D18A9856A87 last_name: Dotter orcid: 0000-0002-9033-9096 - first_name: Sergey full_name: Isaev, Sergey last_name: Isaev - first_name: Michela full_name: Lisi, Michela id: 39383c1b-d3eb-11ef-8d6c-c8cdf4e10c8c last_name: Lisi - first_name: Daniel full_name: Malzl, Daniel last_name: Malzl - first_name: Christoph full_name: Büschl, Christoph id: 2a8c054c-0913-11ee-9159-f8ef515809ed last_name: Büschl - first_name: Sabrina full_name: Ladstätter, Sabrina last_name: Ladstätter - first_name: Bárbara full_name: Oliveira, Bárbara id: 3B03AA1A-F248-11E8-B48F-1D18A9856A87 last_name: Oliveira - first_name: Matteo full_name: Barel, Matteo id: 8959927b-2236-11ed-bd6e-ea83d94ade0e last_name: Barel - first_name: Bernadette full_name: Basilico, Bernadette id: 36035796-5ACA-11E9-A75E-7AF2E5697425 last_name: Basilico orcid: 0000-0003-1843-3173 - first_name: Chaitanya full_name: Chintaluri, Chaitanya id: BA06AFEE-A4BA-11EA-AE5C-14673DDC885E last_name: Chintaluri orcid: 0000-0003-4252-1608 - first_name: Sarah full_name: Gorkiewicz, Sarah id: f141a35d-15a9-11ec-9fb2-fef6becc7b6f last_name: Gorkiewicz - first_name: Mohammad full_name: Goudarzi, Mohammad id: 3384113A-F248-11E8-B48F-1D18A9856A87 last_name: Goudarzi - first_name: Tereza full_name: Belinova, Tereza id: 0bf89b6a-d28b-11eb-8bd6-f43768e4d368 last_name: Belinova - first_name: Stephan full_name: Reichl, Stephan last_name: Reichl - first_name: Gintarė full_name: Sendžikaitė, Gintarė id: dd6d52f2-c50d-11eb-9548-bcf0ff82b344 last_name: Sendžikaitė - first_name: Satish full_name: Arcot Jayaram, Satish id: b0bbee33-09f7-11eb-909c-8b358058d28a last_name: Arcot Jayaram orcid: 0000-0002-2479-2669 - first_name: Peter full_name: Koppensteiner, Peter id: 3B8B25A8-F248-11E8-B48F-1D18A9856A87 last_name: Koppensteiner orcid: 0000-0002-3509-1948 - first_name: Christoph M full_name: Sommer, Christoph M id: 4DF26D8C-F248-11E8-B48F-1D18A9856A87 last_name: Sommer orcid: 0000-0003-1216-9105 - first_name: Tim P full_name: Vogels, Tim P id: CB6FF8D2-008F-11EA-8E08-2637E6697425 last_name: Vogels orcid: 0000-0003-3295-6181 - first_name: Jörg full_name: Menche, Jörg last_name: Menche - first_name: Igor full_name: Adameyko, Igor last_name: Adameyko - first_name: Peter Vasili full_name: Kharchenko, Peter Vasili id: 0095641e-7eb7-11f1-8665-aec51a2ab5e0 last_name: Kharchenko - first_name: Christoph full_name: Bock, Christoph last_name: Bock - first_name: Gaia full_name: Novarino, Gaia id: 3E57A680-F248-11E8-B48F-1D18A9856A87 last_name: Novarino orcid: 0000-0002-7673-7178 citation: ama: Schwarz LA, Dotter C, Isaev S, et al. Cortical development dynamics across autism spectrum disorder mouse models. Nature. 2026. doi:10.1038/s41586-026-10679-1 apa: Schwarz, L. A., Dotter, C., Isaev, S., Lisi, M., Malzl, D., Büschl, C., … Novarino, G. (2026). Cortical development dynamics across autism spectrum disorder mouse models. Nature. Springer Nature. https://doi.org/10.1038/s41586-026-10679-1 chicago: Schwarz, Lena A, Christoph Dotter, Sergey Isaev, Michela Lisi, Daniel Malzl, Christoph Büschl, Sabrina Ladstätter, et al. “Cortical Development Dynamics across Autism Spectrum Disorder Mouse Models.” Nature. Springer Nature, 2026. https://doi.org/10.1038/s41586-026-10679-1. ieee: L. A. Schwarz et al., “Cortical development dynamics across autism spectrum disorder mouse models,” Nature. Springer Nature, 2026. ista: Schwarz LA, Dotter C, Isaev S, Lisi M, Malzl D, Büschl C, Ladstätter S, Oliveira B, Barel M, Basilico B, Chintaluri C, Gorkiewicz S, Goudarzi M, Belinova T, Reichl S, Sendžikaitė G, Arcot Jayaram S, Koppensteiner P, Sommer CM, Vogels TP, Menche J, Adameyko I, Kharchenko PV, Bock C, Novarino G. 2026. Cortical development dynamics across autism spectrum disorder mouse models. Nature. mla: Schwarz, Lena A., et al. “Cortical Development Dynamics across Autism Spectrum Disorder Mouse Models.” Nature, Springer Nature, 2026, doi:10.1038/s41586-026-10679-1. short: L.A. Schwarz, C. Dotter, S. Isaev, M. Lisi, D. Malzl, C. Büschl, S. Ladstätter, B. Oliveira, M. Barel, B. Basilico, C. Chintaluri, S. Gorkiewicz, M. Goudarzi, T. Belinova, S. Reichl, G. Sendžikaitė, S. Arcot Jayaram, P. Koppensteiner, C.M. Sommer, T.P. Vogels, J. Menche, I. Adameyko, P.V. Kharchenko, C. Bock, G. Novarino, Nature (2026). corr_author: '1' dataavailabilitystatement: Single-nucleus multiomics data are available from the Gene Expression Omnibus (GSE328363). The mm10 reference genome was used for the alignment (refdata-cellranger-arc-mm10-2020-A-2.0.0, obtained from https://cf.10xgenomics.com/supp/cell-arc/refdata-cellranger-arc-mm10-2020-A-2.0.0.tar.gz). Single-cell data can be accessed and visualized through a CELLxGENE database (https://adameykolab.hifo.meduniwien.ac.at/cellxgene_public/filecrawl/.2026_Nature_Schwarz). Source data are provided with this paper. Scripts and analyses that support the main findings of this study are accessible in a GitHub repository (https://git.ista.ac.at/research-sofware/mouseome). date_created: 2026-07-13T09:47:21Z date_published: 2026-06-17T00:00:00Z date_updated: 2026-08-04T09:29:55Z day: '17' ddc: - '570' department: - _id: AnKi - _id: GaNo - _id: TiVo - _id: ScienComp - _id: GradSch - _id: Bio - _id: PreCl doi: 10.1038/s41586-026-10679-1 external_id: pmid: - '42310454' has_accepted_license: '1' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1038/s41586-026-10679-1 month: '06' oa: 1 oa_version: Published Version pmid: 1 project: - _id: 34ba8964-11ca-11ed-8bc3-e15864e7e9a6 grant_number: '101044865' name: Toward an understanding of the brain interstitial system and the extracellular proteome in health and autism spectrum disorders - _id: 9B91375C-BA93-11EA-9121-9846C619BF3A grant_number: '707964' name: Critical windows and reversibility of ASD associated with mutations in chromatin remodelers - _id: 2548AE96-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: W1232 name: Molecular Drug Targets - _id: ebb38b5d-77a9-11ec-83b8-a42e08120a88 grant_number: FG1803 49015 name: Neurobiology of anxiety in autism spectrum disorders publication: Nature publication_identifier: eissn: - 1476-4687 issn: - 0028-0836 publication_status: epub_ahead publisher: Springer Nature quality_controlled: '1' related_material: link: - description: News on ISTA website relation: press_release url: https://ista.ac.at/en/news/patterns-in-genetic-chaos/ researchdata_availability: yes scopus_import: '1' status: public supplementarymaterial: yes title: Cortical development dynamics across autism spectrum disorder mouse models tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd year: '2026' ... --- OA_place: publisher OA_type: hybrid PlanS_conform: '1' _id: '22268' abstract: - lang: eng text: AlphaFold3 predicts highly accurate protein structures from sequence but tends to collapse to a single dominant conformation, even when the underlying structure is inherently heterogeneous. Moreover, its predictions are oblivious to experimental conditions that can alter local sequence conformation. In this work, we show that AlphaFold3 can be guided to match data obtained by nuclear magnetic resonance (NMR) spectroscopy, X-ray crystallography and cryogenic electron microscopy (cryo-EM) experiments and combinations thereof. Our approach can also incorporate data that explicitly report on dynamics, such as site-resolved order parameters. We demonstrate that this methodology generates compact structural ensembles whose ensemble-averaged observables agree with experiment, with fewer distance restraint violations than traditionally resolved NMR structures and with unmodeled alternate conformations uncovered in electron density. This methodology paves the way for experimentally aware predictive models that generate structural ensembles consistent with the measurements, potentially over multiple modalities, and that can be further refined toward thermodynamically grounded ensembles by incorporating energetics. acknowledgement: A. Marx acknowledges the financial support of the Helmsley Fellowships Program for Sustainability and Health. A.M.B. and P.S. are supported by the Institute of Science and Technology Austria Internal Project Call grant Generative Protein NMR. S.V. was supported in part by funding from the Eric and Wendy Schmidt Center at the Broad Institute of MIT and Harvard. Open access funding provided by Institute of Science and Technology (IST Austria). article_processing_charge: Yes (via OA deal) article_type: original author: - first_name: Sai A full_name: Maddipatla, Sai A id: e957f5e5-91c9-11f0-a95f-e090f66ecb4d last_name: Maddipatla - first_name: Nadav E full_name: Sellam, Nadav E id: ef280fe0-91c9-11f0-a95f-8dea3f5bc513 last_name: Sellam - first_name: Meital I full_name: Bojan, Meital I id: 11d88cf5-91ca-11f0-a95f-edf9f08f47b7 last_name: Bojan - first_name: Vova full_name: Masalitin, Vova id: ff7958eb-91c9-11f0-a95f-f3bf65828cf6 last_name: Masalitin - first_name: Sanketh full_name: Vedula, Sanketh last_name: Vedula - first_name: Paul full_name: Schanda, Paul id: 7B541462-FAF6-11E9-A490-E8DFE5697425 last_name: Schanda orcid: 0000-0002-9350-7606 - first_name: Ailie full_name: Marx, Ailie last_name: Marx - first_name: Alexander full_name: Bronstein, Alexander id: 58f3726e-7cba-11ef-ad8b-e6e8cb3904e6 last_name: Bronstein orcid: 0000-0001-9699-8730 citation: ama: Maddipatla SA, Sellam NE, Bojan MI, et al. Experiment-guided AlphaFold3 resolves measurement-consistent protein ensembles. Nature Biotechnology. 2026. doi:10.1038/s41587-026-03166-5 apa: Maddipatla, S. A., Sellam, N. E., Bojan, M. I., Masalitin, V., Vedula, S., Schanda, P., … Bronstein, A. M. (2026). Experiment-guided AlphaFold3 resolves measurement-consistent protein ensembles. Nature Biotechnology. Springer Nature. https://doi.org/10.1038/s41587-026-03166-5 chicago: Maddipatla, Sai A, Nadav E Sellam, Meital I Bojan, Vova Masalitin, Sanketh Vedula, Paul Schanda, Ailie Marx, and Alex M. Bronstein. “Experiment-Guided AlphaFold3 Resolves Measurement-Consistent Protein Ensembles.” Nature Biotechnology. Springer Nature, 2026. https://doi.org/10.1038/s41587-026-03166-5. ieee: S. A. Maddipatla et al., “Experiment-guided AlphaFold3 resolves measurement-consistent protein ensembles,” Nature Biotechnology. Springer Nature, 2026. ista: Maddipatla SA, Sellam NE, Bojan MI, Masalitin V, Vedula S, Schanda P, Marx A, Bronstein AM. 2026. Experiment-guided AlphaFold3 resolves measurement-consistent protein ensembles. Nature Biotechnology. mla: Maddipatla, Sai A., et al. “Experiment-Guided AlphaFold3 Resolves Measurement-Consistent Protein Ensembles.” Nature Biotechnology, Springer Nature, 2026, doi:10.1038/s41587-026-03166-5. short: S.A. Maddipatla, N.E. Sellam, M.I. Bojan, V. Masalitin, S. Vedula, P. Schanda, A. Marx, A.M. Bronstein, Nature Biotechnology (2026). corr_author: '1' das_tickbox: '1' dataavailabilitystatement: All structures and metrics reported in this paper are openly available on Harvard Dataverse - https://doi.org/10.7910/DVN/PLYUHN. All code is openly available on GitHub (https://github.com/sai-advaith/guided_alphafold); the version used for this paper (version 0.9.1) is permanently archived on Zenodo https://doi.org/10.5281/zenodo.17307005 date_created: 2026-07-12T22:02:19Z date_published: 2026-06-29T00:00:00Z date_updated: 2026-08-04T09:25:18Z day: '29' ddc: - '570' department: - _id: PaSc - _id: AlBr - _id: GradSch doi: 10.1038/s41587-026-03166-5 external_id: pmid: - '42374114' has_accepted_license: '1' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1038/s41587-026-03166-5 month: '06' oa: 1 oa_version: Published Version pmid: 1 publication: Nature Biotechnology publication_identifier: eissn: - 1546-1696 issn: - 1087-0156 publication_status: epub_ahead publisher: Springer Nature quality_controlled: '1' related_material: link: - description: News on ISTA website relation: press_release url: https://ista.ac.at/en/news/toward-experiment-guided-alphafold/ researchdata_availability: yes scopus_import: '1' status: public supplementarymaterial: yes title: Experiment-guided AlphaFold3 resolves measurement-consistent protein ensembles tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd year: '2026' ... --- OA_place: publisher OA_type: hybrid _id: '22148' abstract: - lang: eng text: 'How the twin-arginine translocase (Tat) system transports fully folded substrate proteins across cellular membranes without disrupting membrane integrity has been a fundamental question in cell biology for decades. The Tat system, found in prokaryotes and plant organelles, recognizes a cargo signal peptide via a conserved twin-arginine motif. The multi-subunit Tat complex facilitates the proton-motive-force-dependent translocation process, yet its overall architecture has remained unknown. Here, we present the cryo-electron microscopy (cryo-EM) structure of the Escherichia coli (E. coli) trimeric TatB₃C₃ complex with bound substrate SufI, assembled in vivo. The complex adopts an unusual, wide-open, bowl-shaped architecture with a polar inner cavity. Unexpectedly, the cargo is engaged in a dual-contact mode: while the signal peptide binds inside one TatBC unit, the folded domain docks tightly onto an adjacent unit, possibly performing a proofreading function. This structure provides a mechanistic framework for substrate engagement and suggests the direct involvement of the entire Tat complex in substrate translocation.' acknowledged_ssus: - _id: EM-Fac - _id: ScienComp acknowledgement: We thank IST Austria for providing the funding. We thank IST Austria EM facility for the use of Titan Krios TEM. Data processing was performed using IST high-performance computer cluster. We thank Dr. R. Roemhild and Professor C. Guet (ISTA) for help in constructing Tat deletion strains and Dr. A. Charnagalov (ISTA) for technical help. article_processing_charge: Yes (via OA deal) article_type: original author: - first_name: Ziyu full_name: Zhao, Ziyu id: a63fe682-9f3a-11ee-bf8c-cfdf919b9850 last_name: Zhao - first_name: Leonid A full_name: Sazanov, Leonid A id: 338D39FE-F248-11E8-B48F-1D18A9856A87 last_name: Sazanov orcid: 0000-0002-0977-7989 biorxivid: 1 citation: ama: Zhao Z, Sazanov LA. Structure of E. Coli twin-arginine translocase (Tat) complex with bound cargo. Molecular Cell. doi:10.1016/j.molcel.2026.05.026 apa: Zhao, Z., & Sazanov, L. A. (n.d.). Structure of E. Coli twin-arginine translocase (Tat) complex with bound cargo. Molecular Cell. Elsevier. https://doi.org/10.1016/j.molcel.2026.05.026 chicago: Zhao, Ziyu, and Leonid A Sazanov. “Structure of E. Coli Twin-Arginine Translocase (Tat) Complex with Bound Cargo.” Molecular Cell. Elsevier, n.d. https://doi.org/10.1016/j.molcel.2026.05.026. ieee: Z. Zhao and L. A. Sazanov, “Structure of E. Coli twin-arginine translocase (Tat) complex with bound cargo,” Molecular Cell. Elsevier. ista: Zhao Z, Sazanov LA. Structure of E. Coli twin-arginine translocase (Tat) complex with bound cargo. Molecular Cell. mla: Zhao, Ziyu, and Leonid A. Sazanov. “Structure of E. Coli Twin-Arginine Translocase (Tat) Complex with Bound Cargo.” Molecular Cell, Elsevier, doi:10.1016/j.molcel.2026.05.026. short: Z. Zhao, L.A. Sazanov, Molecular Cell (n.d.). corr_author: '1' das_tickbox: '1' dataavailabilitystatement: "This study did not generate new unique reagents. Strains and plasmids generated in this study are available from the lead contact without restrictions.\r\n• Source data are provided within this paper. The cryo-EM map is deposited in the Electron Microscopy Data Bank under accession number EMD-53848. The model is deposited in the Protein Data Bank under accession number 9R91. The structural data are publicly available as of the date of publication. Raw images of spot assays, SDS-PAGE and BN-PAGE gels with Coomassie staining and immunoblot images are available at Mendeley Data (https://doi.org/10.17632/v2g3p9n985.1).\r\n• This paper does not report original code.\r\n• Any additional information required to reanalyze the data reported in this paper is available from the lead contact upon request." date_created: 2026-06-28T22:01:35Z date_published: 2026-06-22T00:00:00Z date_updated: 2026-08-04T09:27:06Z day: '22' ddc: - '570' department: - _id: LeSa doi: 10.1016/j.molcel.2026.05.026 external_id: biorxivid: - 10.1101/2025.09.16.676506 has_accepted_license: '1' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1016/j.molcel.2026.05.026 month: '06' oa: 1 oa_version: Published Version publication: Molecular Cell publication_identifier: eissn: - 1097-4164 issn: - 1097-2765 publication_status: inpress publisher: Elsevier quality_controlled: '1' related_material: link: - description: News on ISTA website relation: press_release url: https://ista.ac.at/en/news/the-gate-for-bulky-cargo/ record: - id: '22189' relation: research_data status: for_moderation researchdata_availability: yes scopus_import: '1' status: public supplementarymaterial: yes title: Structure of E. Coli twin-arginine translocase (Tat) complex with bound cargo tmp: image: /images/cc_by_nc.png legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0) short: CC BY-NC (4.0) type: journal_article user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd year: '2026' ...