---
_id: '15071'
abstract:
- lang: eng
  text: "A mesophilic methanogenic culture, designated JL01, was isolated from Holocene
    permafrost in the Russian Arctic [1]. After long-term extensive cultivation at
    15°C it turned out to be a tied binary culture of archaeal (JL01) and bacterial
    (Sphaerochaeta associata GLS2) strains.\r\nStrain JL01 was a strict anaerobe and
    grew on methanol, acetate and methylamines as energy and carbon sources. Cells
    were irregular coccoid, non-motile, non-spore-forming, and Gram-stainpositive.
    Optimum conditions for growth were 24-28 oC, pH 6.8–7.3 and 0.075-0.1 M NaCl.\r\nPhylogenetic
    tree reconstructions based on 16S rRNA and concatenated alignment of broadly\r\nconserved
    protein-coding genes revealed its close relation to Methanosarcina mazei S-6\r\nT
    (similarity 99.5%). The comparison of whole genomic sequences (ANI) of the isolate
    and the type strain of M.mazei was 98.5%, which is higher than the values recommended
    for new species. Thus strain JL01 (=VKM B-2370=JCM 31898) represents the first
    M. mazei isolated from permanently subzero Arcticsediments. The long-term co-cultivation
    of JL01 with S. associata GLS2T showed the methane production without any additional
    carbon and energy sources. Genome analysis of S. associata GLS2T revealed putative
    genes involved in methanochondroithin catabolism."
acknowledgement: "The work was supported by of Russian Foundation of Basic Research:
  grant № 19-04-00831 for Viktoria Shcherbakova and Olga Troshina, grant № 18-34-00334
  for Viktoriia Oshurkova and Vladimir Trubitsyn. \r\nWe thank Dr Natalia Suzina (IBPM
  RAS, Federal Research Center Pushchino Center for\r\nBiological Research RAS) for
  the help with the microscopic studies, respectively; Dr. Margarita Meyer (Division
  of Genetics, Department of Medicine, BWH and HMS, USA) and Dr Fedor Kondrashov (IST,
  Austria) for their help in obtaining the genomic sequence of strain JL01. "
article_processing_charge: Yes
author:
- first_name: Viktoriia
  full_name: Oshurkova, Viktoriia
  last_name: Oshurkova
- first_name: Olga
  full_name: Troshina, Olga
  last_name: Troshina
- first_name: Vladimir
  full_name: Trubitsyn, Vladimir
  last_name: Trubitsyn
- first_name: Yana
  full_name: Ryzhmanova, Yana
  last_name: Ryzhmanova
- first_name: Olga
  full_name: Bochkareva, Olga
  id: C4558D3C-6102-11E9-A62E-F418E6697425
  last_name: Bochkareva
  orcid: 0000-0003-1006-6639
- first_name: Viktoria
  full_name: Shcherbakova, Viktoria
  last_name: Shcherbakova
citation:
  ama: 'Oshurkova V, Troshina O, Trubitsyn V, Ryzhmanova Y, Bochkareva O, Shcherbakova
    V. Characterization of methanosarcina mazei JL01 isolated from holocene arctic
    permafrost and study of the archaeon cooperation with bacterium Sphaerochaeta
    associata GLS2T. In: <i>Proceedings of 1st International Electronic Conference
    on Microbiology</i>. MDPI; 2020. doi:<a href="https://doi.org/10.3390/ecm2020-07116">10.3390/ecm2020-07116</a>'
  apa: 'Oshurkova, V., Troshina, O., Trubitsyn, V., Ryzhmanova, Y., Bochkareva, O.,
    &#38; Shcherbakova, V. (2020). Characterization of methanosarcina mazei JL01 isolated
    from holocene arctic permafrost and study of the archaeon cooperation with bacterium
    Sphaerochaeta associata GLS2T. In <i>Proceedings of 1st International Electronic
    Conference on Microbiology</i>. Virtual: MDPI. <a href="https://doi.org/10.3390/ecm2020-07116">https://doi.org/10.3390/ecm2020-07116</a>'
  chicago: Oshurkova, Viktoriia, Olga Troshina, Vladimir Trubitsyn, Yana Ryzhmanova,
    Olga Bochkareva, and Viktoria Shcherbakova. “Characterization of Methanosarcina
    Mazei JL01 Isolated from Holocene Arctic Permafrost and Study of the Archaeon
    Cooperation with Bacterium Sphaerochaeta Associata GLS2T.” In <i>Proceedings of
    1st International Electronic Conference on Microbiology</i>. MDPI, 2020. <a href="https://doi.org/10.3390/ecm2020-07116">https://doi.org/10.3390/ecm2020-07116</a>.
  ieee: V. Oshurkova, O. Troshina, V. Trubitsyn, Y. Ryzhmanova, O. Bochkareva, and
    V. Shcherbakova, “Characterization of methanosarcina mazei JL01 isolated from
    holocene arctic permafrost and study of the archaeon cooperation with bacterium
    Sphaerochaeta associata GLS2T,” in <i>Proceedings of 1st International Electronic
    Conference on Microbiology</i>, Virtual, 2020.
  ista: 'Oshurkova V, Troshina O, Trubitsyn V, Ryzhmanova Y, Bochkareva O, Shcherbakova
    V. 2020. Characterization of methanosarcina mazei JL01 isolated from holocene
    arctic permafrost and study of the archaeon cooperation with bacterium Sphaerochaeta
    associata GLS2T. Proceedings of 1st International Electronic Conference on Microbiology.
    ECM: Electronic Conference on Microbiology.'
  mla: Oshurkova, Viktoriia, et al. “Characterization of Methanosarcina Mazei JL01
    Isolated from Holocene Arctic Permafrost and Study of the Archaeon Cooperation
    with Bacterium Sphaerochaeta Associata GLS2T.” <i>Proceedings of 1st International
    Electronic Conference on Microbiology</i>, MDPI, 2020, doi:<a href="https://doi.org/10.3390/ecm2020-07116">10.3390/ecm2020-07116</a>.
  short: V. Oshurkova, O. Troshina, V. Trubitsyn, Y. Ryzhmanova, O. Bochkareva, V.
    Shcherbakova, in:, Proceedings of 1st International Electronic Conference on Microbiology,
    MDPI, 2020.
conference:
  end_date: 2020-11-30
  location: Virtual
  name: 'ECM: Electronic Conference on Microbiology'
  start_date: 2020-11-02
date_created: 2024-03-04T11:41:31Z
date_published: 2020-11-02T00:00:00Z
date_updated: 2024-03-20T08:06:22Z
day: '02'
ddc:
- '570'
department:
- _id: FyKo
doi: 10.3390/ecm2020-07116
file:
- access_level: open_access
  checksum: d1914af7811a21a4b2744eb51b5834e3
  content_type: application/pdf
  creator: dernst
  date_created: 2024-03-20T08:05:46Z
  date_updated: 2024-03-20T08:05:46Z
  file_id: '15127'
  file_name: 2020_ECM_Oshurkova.pdf
  file_size: 595543
  relation: main_file
  success: 1
file_date_updated: 2024-03-20T08:05:46Z
has_accepted_license: '1'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
publication: Proceedings of 1st International Electronic Conference on Microbiology
publication_status: published
publisher: MDPI
quality_controlled: '1'
status: public
title: Characterization of methanosarcina mazei JL01 isolated from holocene arctic
  permafrost and study of the archaeon cooperation with bacterium Sphaerochaeta associata
  GLS2T
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '15072'
abstract:
- lang: eng
  text: The interaction among fundamental particles in nature leads to many interesting
    effects in quantum statistical mechanics; examples include superconductivity for
    charged systems and superfluidity in cold gases. It is a huge challenge for mathematical
    physics to understand the collective behavior of systems containing a large number
    of particles, emerging from known microscopic interactions. In this workshop we
    brought together researchers working on different aspects of many-body quantum
    mechanics to discuss recent developments, exchange ideas and propose new challenges
    and research directions.
article_processing_charge: No
article_type: original
author:
- first_name: Christian
  full_name: Hainzl, Christian
  last_name: Hainzl
- first_name: Benjamin
  full_name: Schlein, Benjamin
  last_name: Schlein
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
- first_name: Simone
  full_name: Warzel, Simone
  last_name: Warzel
citation:
  ama: Hainzl C, Schlein B, Seiringer R, Warzel S. Many-body quantum systems. <i>Oberwolfach
    Reports</i>. 2020;16(3):2541-2603. doi:<a href="https://doi.org/10.4171/owr/2019/41">10.4171/owr/2019/41</a>
  apa: Hainzl, C., Schlein, B., Seiringer, R., &#38; Warzel, S. (2020). Many-body
    quantum systems. <i>Oberwolfach Reports</i>. European Mathematical Society. <a
    href="https://doi.org/10.4171/owr/2019/41">https://doi.org/10.4171/owr/2019/41</a>
  chicago: Hainzl, Christian, Benjamin Schlein, Robert Seiringer, and Simone Warzel.
    “Many-Body Quantum Systems.” <i>Oberwolfach Reports</i>. European Mathematical
    Society, 2020. <a href="https://doi.org/10.4171/owr/2019/41">https://doi.org/10.4171/owr/2019/41</a>.
  ieee: C. Hainzl, B. Schlein, R. Seiringer, and S. Warzel, “Many-body quantum systems,”
    <i>Oberwolfach Reports</i>, vol. 16, no. 3. European Mathematical Society, pp.
    2541–2603, 2020.
  ista: Hainzl C, Schlein B, Seiringer R, Warzel S. 2020. Many-body quantum systems.
    Oberwolfach Reports. 16(3), 2541–2603.
  mla: Hainzl, Christian, et al. “Many-Body Quantum Systems.” <i>Oberwolfach Reports</i>,
    vol. 16, no. 3, European Mathematical Society, 2020, pp. 2541–603, doi:<a href="https://doi.org/10.4171/owr/2019/41">10.4171/owr/2019/41</a>.
  short: C. Hainzl, B. Schlein, R. Seiringer, S. Warzel, Oberwolfach Reports 16 (2020)
    2541–2603.
date_created: 2024-03-04T11:46:12Z
date_published: 2020-09-10T00:00:00Z
date_updated: 2024-03-12T12:02:00Z
day: '10'
department:
- _id: RoSe
doi: 10.4171/owr/2019/41
intvolume: '        16'
issue: '3'
language:
- iso: eng
month: '09'
oa_version: None
page: 2541-2603
publication: Oberwolfach Reports
publication_identifier:
  issn:
  - 1660-8933
publication_status: published
publisher: European Mathematical Society
quality_controlled: '1'
status: public
title: Many-body quantum systems
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2020'
...
---
_id: '15074'
abstract:
- lang: eng
  text: We introduce a new graph problem, the token dropping game, and we show how
    to solve it efficiently in a distributed setting. We use the token dropping game
    as a tool to design an efficient distributed algorithm for the stable orientation
    problem, which is a special case of the more general locally optimal semi-matching
    problem. The prior work by Czygrinow et al. (DISC 2012) finds a locally optimal
    semi-matching in O(Δ⁵) rounds in graphs of maximum degree Δ, which directly implies
    an algorithm with the same runtime for stable orientations. We improve the runtime
    to O(Δ⁴) for stable orientations and prove a lower bound of Ω(Δ) rounds.
alternative_title:
- LIPIcs
article_number: '40'
article_processing_charge: No
arxiv: 1
author:
- first_name: Sebastian
  full_name: Brandt, Sebastian
  last_name: Brandt
- first_name: Barbara
  full_name: Keller, Barbara
  last_name: Keller
- first_name: Joel
  full_name: Rybicki, Joel
  id: 334EFD2E-F248-11E8-B48F-1D18A9856A87
  last_name: Rybicki
  orcid: 0000-0002-6432-6646
- first_name: Jukka
  full_name: Suomela, Jukka
  last_name: Suomela
- first_name: Jara
  full_name: Uitto, Jara
  last_name: Uitto
citation:
  ama: 'Brandt S, Keller B, Rybicki J, Suomela J, Uitto J. Brief announcement: Efficient
    load-balancing through distributed token dropping. In: <i>34th International Symposium
    on Distributed Computing</i>. Vol 179. Schloss Dagstuhl - Leibniz-Zentrum für
    Informatik; 2020. doi:<a href="https://doi.org/10.4230/LIPIcs.DISC.2020.40">10.4230/LIPIcs.DISC.2020.40</a>'
  apa: 'Brandt, S., Keller, B., Rybicki, J., Suomela, J., &#38; Uitto, J. (2020).
    Brief announcement: Efficient load-balancing through distributed token dropping.
    In <i>34th International Symposium on Distributed Computing</i> (Vol. 179). Virtual:
    Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.4230/LIPIcs.DISC.2020.40">https://doi.org/10.4230/LIPIcs.DISC.2020.40</a>'
  chicago: 'Brandt, Sebastian, Barbara Keller, Joel Rybicki, Jukka Suomela, and Jara
    Uitto. “Brief Announcement: Efficient Load-Balancing through Distributed Token
    Dropping.” In <i>34th International Symposium on Distributed Computing</i>, Vol.
    179. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2020. <a href="https://doi.org/10.4230/LIPIcs.DISC.2020.40">https://doi.org/10.4230/LIPIcs.DISC.2020.40</a>.'
  ieee: 'S. Brandt, B. Keller, J. Rybicki, J. Suomela, and J. Uitto, “Brief announcement:
    Efficient load-balancing through distributed token dropping,” in <i>34th International
    Symposium on Distributed Computing</i>, Virtual, 2020, vol. 179.'
  ista: 'Brandt S, Keller B, Rybicki J, Suomela J, Uitto J. 2020. Brief announcement:
    Efficient load-balancing through distributed token dropping. 34th International
    Symposium on Distributed Computing. DISC: Symposium on Distributed Computing,
    LIPIcs, vol. 179, 40.'
  mla: 'Brandt, Sebastian, et al. “Brief Announcement: Efficient Load-Balancing through
    Distributed Token Dropping.” <i>34th International Symposium on Distributed Computing</i>,
    vol. 179, 40, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2020, doi:<a
    href="https://doi.org/10.4230/LIPIcs.DISC.2020.40">10.4230/LIPIcs.DISC.2020.40</a>.'
  short: S. Brandt, B. Keller, J. Rybicki, J. Suomela, J. Uitto, in:, 34th International
    Symposium on Distributed Computing, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
    2020.
conference:
  end_date: 2020-10-16
  location: Virtual
  name: 'DISC: Symposium on Distributed Computing'
  start_date: 2020-10-12
corr_author: '1'
date_created: 2024-03-05T07:09:12Z
date_published: 2020-10-07T00:00:00Z
date_updated: 2025-04-14T13:01:27Z
day: '07'
ddc:
- '000'
department:
- _id: DaAl
doi: 10.4230/LIPIcs.DISC.2020.40
external_id:
  arxiv:
  - '2005.07761'
file:
- access_level: open_access
  checksum: 23e2d9321aef53092dc1e24a8ab82d72
  content_type: application/pdf
  creator: dernst
  date_created: 2024-03-05T07:08:27Z
  date_updated: 2024-03-05T07:08:27Z
  file_id: '15075'
  file_name: 2020_LIPIcs_Brandt.pdf
  file_size: 303529
  relation: main_file
  success: 1
file_date_updated: 2024-03-05T07:08:27Z
has_accepted_license: '1'
intvolume: '       179'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/3.0/
month: '10'
oa: 1
oa_version: Published Version
publication: 34th International Symposium on Distributed Computing
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
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scopus_import: '1'
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title: 'Brief announcement: Efficient load-balancing through distributed token dropping'
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  legal_code_url: https://creativecommons.org/licenses/by/3.0/legalcode
  name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)
  short: CC BY (3.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 179
year: '2020'
...
---
_id: '15077'
abstract:
- lang: eng
  text: "We consider the following dynamic load-balancing process: given an underlying
    graph G with n nodes, in each step t≥ 0, one unit of load is created, and placed
    at a randomly chosen graph node. In the same step, the chosen node picks a random
    neighbor, and the two nodes balance their loads by averaging them. We are interested
    in the expected gap between the minimum and maximum loads at nodes as the process
    progresses, and its dependence on n and on the graph structure. Variants of the
    above graphical balanced allocation process have been studied previously by Peres,
    Talwar, and Wieder [Peres et al., 2015], and by Sauerwald and Sun [Sauerwald and
    Sun, 2015]. These authors left as open the question of characterizing the gap
    in the case of cycle graphs in the dynamic case, where weights are created during
    the algorithm’s execution. For this case, the only known upper bound is of \U0001D4AA(n
    log n), following from a majorization argument due to [Peres et al., 2015], which
    analyzes a related graphical allocation process. In this paper, we provide an
    upper bound of \U0001D4AA (√n log n) on the expected gap of the above process
    for cycles of length n. We introduce a new potential analysis technique, which
    enables us to bound the difference in load between k-hop neighbors on the cycle,
    for any k ≤ n/2. We complement this with a \"gap covering\" argument, which bounds
    the maximum value of the gap by bounding its value across all possible subsets
    of a certain structure, and recursively bounding the gaps within each subset.
    We provide analytical and experimental evidence that our upper bound on the gap
    is tight up to a logarithmic factor."
acknowledgement: "The authors sincerely thank Thomas Sauerwald and George Giakkoupis
  for insightful discussions, and Mohsen Ghaffari, Yuval Peres, and Udi Wieder for
  feedback on earlier\r\nversions of this draft. We also thank the ICALP anonymous
  reviewers for their very useful comments.\r\nFunding: European Research Council
  funding award PR1042ERC01"
alternative_title:
- LIPIcs
article_number: '7'
article_processing_charge: No
arxiv: 1
author:
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: Giorgi
  full_name: Nadiradze, Giorgi
  id: 3279A00C-F248-11E8-B48F-1D18A9856A87
  last_name: Nadiradze
  orcid: 0000-0001-5634-0731
- first_name: Amirmojtaba
  full_name: Sabour, Amirmojtaba
  id: bcc145fd-e77f-11ea-ae8b-80d661dbff67
  last_name: Sabour
citation:
  ama: 'Alistarh D-A, Nadiradze G, Sabour A. Dynamic averaging load balancing on cycles.
    In: <i>47th International Colloquium on Automata, Languages, and Programming</i>.
    Vol 168. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2020. doi:<a href="https://doi.org/10.4230/LIPIcs.ICALP.2020.7">10.4230/LIPIcs.ICALP.2020.7</a>'
  apa: 'Alistarh, D.-A., Nadiradze, G., &#38; Sabour, A. (2020). Dynamic averaging
    load balancing on cycles. In <i>47th International Colloquium on Automata, Languages,
    and Programming</i> (Vol. 168). Saarbrücken, Germany, Virtual: Schloss Dagstuhl
    - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.4230/LIPIcs.ICALP.2020.7">https://doi.org/10.4230/LIPIcs.ICALP.2020.7</a>'
  chicago: Alistarh, Dan-Adrian, Giorgi Nadiradze, and Amirmojtaba Sabour. “Dynamic
    Averaging Load Balancing on Cycles.” In <i>47th International Colloquium on Automata,
    Languages, and Programming</i>, Vol. 168. Schloss Dagstuhl - Leibniz-Zentrum für
    Informatik, 2020. <a href="https://doi.org/10.4230/LIPIcs.ICALP.2020.7">https://doi.org/10.4230/LIPIcs.ICALP.2020.7</a>.
  ieee: D.-A. Alistarh, G. Nadiradze, and A. Sabour, “Dynamic averaging load balancing
    on cycles,” in <i>47th International Colloquium on Automata, Languages, and Programming</i>,
    Saarbrücken, Germany, Virtual, 2020, vol. 168.
  ista: 'Alistarh D-A, Nadiradze G, Sabour A. 2020. Dynamic averaging load balancing
    on cycles. 47th International Colloquium on Automata, Languages, and Programming.
    ICALP: Automata, Languages and Programming, LIPIcs, vol. 168, 7.'
  mla: Alistarh, Dan-Adrian, et al. “Dynamic Averaging Load Balancing on Cycles.”
    <i>47th International Colloquium on Automata, Languages, and Programming</i>,
    vol. 168, 7, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2020, doi:<a href="https://doi.org/10.4230/LIPIcs.ICALP.2020.7">10.4230/LIPIcs.ICALP.2020.7</a>.
  short: D.-A. Alistarh, G. Nadiradze, A. Sabour, in:, 47th International Colloquium
    on Automata, Languages, and Programming, Schloss Dagstuhl - Leibniz-Zentrum für
    Informatik, 2020.
conference:
  end_date: 2020-07-11
  location: Saarbrücken, Germany, Virtual
  name: 'ICALP: Automata, Languages and Programming'
  start_date: 2020-07-08
corr_author: '1'
date_created: 2024-03-05T07:25:37Z
date_published: 2020-06-29T00:00:00Z
date_updated: 2025-07-10T11:55:11Z
day: '29'
ddc:
- '000'
department:
- _id: DaAl
doi: 10.4230/LIPIcs.ICALP.2020.7
ec_funded: 1
external_id:
  arxiv:
  - '2003.09297'
file:
- access_level: open_access
  checksum: e5eb16199f4ccfd77a321977eb3f026f
  content_type: application/pdf
  creator: dernst
  date_created: 2024-03-05T07:25:15Z
  date_updated: 2024-03-05T07:25:15Z
  file_id: '15078'
  file_name: 2020_LIPIcs_Alistarh.pdf
  file_size: 782987
  relation: main_file
  success: 1
file_date_updated: 2024-03-05T07:25:15Z
has_accepted_license: '1'
intvolume: '       168'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
project:
- _id: 268A44D6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '805223'
  name: Elastic Coordination for Scalable Machine Learning
publication: 47th International Colloquium on Automata, Languages, and Programming
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
related_material:
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  - id: '8286'
    relation: later_version
    status: public
scopus_import: '1'
status: public
title: Dynamic averaging load balancing on cycles
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/3.0/legalcode
  name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)
  short: CC BY (3.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 168
year: '2020'
...
---
_id: '15079'
abstract:
- lang: eng
  text: "Large complex systems tend to develop universal patterns that often represent
    their essential characteristics. For example, the cumulative effects of independent
    or weakly dependent random variables often yield the Gaussian universality class
    via the central limit theorem. For non-commutative random variables, e.g. matrices,
    the Gaussian behavior is often replaced by another universality class, commonly
    called random matrix statistics. Nearby eigenvalues are strongly correlated, and,
    remarkably, their correlation structure is universal, depending only on the symmetry
    type of the matrix. Even more surprisingly, this feature is not restricted to
    matrices; in fact Eugene Wigner, the pioneer of the field, discovered in the 1950s
    that distributions of the gaps between energy levels of complicated quantum systems
    universally follow the same random matrix statistics. This claim has never been
    rigorously proved for any realistic physical system but experimental data and
    extensive numerics leave no doubt as to its correctness. Since then random matrices
    have proved to be extremely useful phenomenological models in a wide range of
    applications beyond quantum physics that include number theory, statistics, neuroscience,
    population dynamics, wireless communication and mathematical finance. The ubiquity
    of random matrices in natural sciences is still a mystery, but recent years have
    witnessed a breakthrough in the mathematical description of the statistical structure
    of their spectrum. Random matrices and closely related areas such as log-gases
    have become an extremely active research area in probability theory.\r\nThis workshop
    brought together outstanding researchers from a variety of mathematical backgrounds
    whose areas of research are linked to random matrices. While there are strong
    links between their motivations, the techniques used by these researchers span
    a large swath of mathematics, ranging from purely algebraic techniques to stochastic
    analysis, classical probability theory, operator algebra, supersymmetry, orthogonal
    polynomials, etc."
article_processing_charge: No
article_type: original
author:
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
  last_name: Erdös
  orcid: 0000-0001-5366-9603
- first_name: Friedrich
  full_name: Götze, Friedrich
  last_name: Götze
- first_name: Alice
  full_name: Guionnet, Alice
  last_name: Guionnet
citation:
  ama: Erdös L, Götze F, Guionnet A. Random matrices. <i>Oberwolfach Reports</i>.
    2020;16(4):3459-3527. doi:<a href="https://doi.org/10.4171/owr/2019/56">10.4171/owr/2019/56</a>
  apa: Erdös, L., Götze, F., &#38; Guionnet, A. (2020). Random matrices. <i>Oberwolfach
    Reports</i>. European Mathematical Society. <a href="https://doi.org/10.4171/owr/2019/56">https://doi.org/10.4171/owr/2019/56</a>
  chicago: Erdös, László, Friedrich Götze, and Alice Guionnet. “Random Matrices.”
    <i>Oberwolfach Reports</i>. European Mathematical Society, 2020. <a href="https://doi.org/10.4171/owr/2019/56">https://doi.org/10.4171/owr/2019/56</a>.
  ieee: L. Erdös, F. Götze, and A. Guionnet, “Random matrices,” <i>Oberwolfach Reports</i>,
    vol. 16, no. 4. European Mathematical Society, pp. 3459–3527, 2020.
  ista: Erdös L, Götze F, Guionnet A. 2020. Random matrices. Oberwolfach Reports.
    16(4), 3459–3527.
  mla: Erdös, László, et al. “Random Matrices.” <i>Oberwolfach Reports</i>, vol. 16,
    no. 4, European Mathematical Society, 2020, pp. 3459–527, doi:<a href="https://doi.org/10.4171/owr/2019/56">10.4171/owr/2019/56</a>.
  short: L. Erdös, F. Götze, A. Guionnet, Oberwolfach Reports 16 (2020) 3459–3527.
date_created: 2024-03-05T07:54:44Z
date_published: 2020-11-19T00:00:00Z
date_updated: 2024-03-12T12:25:18Z
day: '19'
department:
- _id: LaEr
doi: 10.4171/owr/2019/56
intvolume: '        16'
issue: '4'
language:
- iso: eng
month: '11'
oa_version: None
page: 3459-3527
publication: Oberwolfach Reports
publication_identifier:
  issn:
  - 1660-8933
publication_status: published
publisher: European Mathematical Society
quality_controlled: '1'
status: public
title: Random matrices
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2020'
...
---
_id: '15082'
abstract:
- lang: eng
  text: "Two plane drawings of geometric graphs on the same set of points are called
    disjoint compatible if their union is plane and they do not have an edge in common.
    For a given set S of 2n points two plane drawings of perfect matchings M1 and
    M2 (which do not need to be disjoint nor compatible) are disjoint tree-compatible
    if there exists a plane drawing of a spanning tree T on S which is disjoint compatible
    to both M1 and M2.\r\nWe show that the graph of all disjoint tree-compatible perfect
    geometric matchings on 2n points in convex position is connected if and only if
    2n ≥ 10. Moreover, in that case the diameter\r\nof this graph is either 4 or 5,
    independent of n."
acknowledgement: Research on this work was initiated at the 6th Austrian-Japanese-Mexican-Spanish
  Workshop on Discrete Geometry and continued during the 16th European Geometric Graph-Week,
  both held near Strobl, Austria. We are grateful to the participants for the inspiring
  atmosphere. We especially thank Alexander Pilz for bringing this class of problems
  to our attention and Birgit Vogtenhuber for inspiring discussions. D.P. is partially
  supported by the FWF grant I 3340-N35 (Collaborative DACH project Arrangements and
  Drawings). The research stay of P.P. at IST Austria is funded by the project CZ.02.2.69/0.0/0.0/17_050/0008466
  Improvement of internationalization in the field of research and development at
  Charles University, through the support of quality projects MSCA-IF. This project
  has received funding from the European Union’s Horizon 2020 research and innovation
  programme under the Marie Skłodowska-Curie grant agreement No 734922.
article_number: '56'
article_processing_charge: No
author:
- first_name: Oswin
  full_name: Aichholzer, Oswin
  last_name: Aichholzer
- first_name: Julia
  full_name: Obmann, Julia
  last_name: Obmann
- first_name: Pavel
  full_name: Patak, Pavel
  id: B593B804-1035-11EA-B4F1-947645A5BB83
  last_name: Patak
- first_name: Daniel
  full_name: Perz, Daniel
  last_name: Perz
- first_name: Josef
  full_name: Tkadlec, Josef
  id: 3F24CCC8-F248-11E8-B48F-1D18A9856A87
  last_name: Tkadlec
  orcid: 0000-0002-1097-9684
citation:
  ama: 'Aichholzer O, Obmann J, Patak P, Perz D, Tkadlec J. Disjoint tree-compatible
    plane perfect matchings. In: <i>36th European Workshop on Computational Geometry</i>.
    ; 2020.'
  apa: Aichholzer, O., Obmann, J., Patak, P., Perz, D., &#38; Tkadlec, J. (2020).
    Disjoint tree-compatible plane perfect matchings. In <i>36th European Workshop
    on Computational Geometry</i>. Würzburg, Germany, Virtual.
  chicago: Aichholzer, Oswin, Julia Obmann, Pavel Patak, Daniel Perz, and Josef Tkadlec.
    “Disjoint Tree-Compatible Plane Perfect Matchings.” In <i>36th European Workshop
    on Computational Geometry</i>, 2020.
  ieee: O. Aichholzer, J. Obmann, P. Patak, D. Perz, and J. Tkadlec, “Disjoint tree-compatible
    plane perfect matchings,” in <i>36th European Workshop on Computational Geometry</i>,
    Würzburg, Germany, Virtual, 2020.
  ista: 'Aichholzer O, Obmann J, Patak P, Perz D, Tkadlec J. 2020. Disjoint tree-compatible
    plane perfect matchings. 36th European Workshop on Computational Geometry. EuroCG:
    European Workshop on Computational Geometry, 56.'
  mla: Aichholzer, Oswin, et al. “Disjoint Tree-Compatible Plane Perfect Matchings.”
    <i>36th European Workshop on Computational Geometry</i>, 56, 2020.
  short: O. Aichholzer, J. Obmann, P. Patak, D. Perz, J. Tkadlec, in:, 36th European
    Workshop on Computational Geometry, 2020.
conference:
  end_date: 2020-03-18
  location: Würzburg, Germany, Virtual
  name: 'EuroCG: European Workshop on Computational Geometry'
  start_date: 2020-03-16
corr_author: '1'
date_created: 2024-03-05T08:57:17Z
date_published: 2020-04-01T00:00:00Z
date_updated: 2026-06-18T17:45:52Z
day: '01'
ddc:
- '000'
department:
- _id: KrCh
- _id: UlWa
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www1.pub.informatik.uni-wuerzburg.de/eurocg2020/data/uploads/papers/eurocg20_paper_56.pdf
month: '04'
oa: 1
oa_version: Published Version
publication: 36th European Workshop on Computational Geometry
publication_status: published
quality_controlled: '1'
status: public
title: Disjoint tree-compatible plane perfect matchings
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '15086'
abstract:
- lang: eng
  text: "Many communication-efficient variants of SGD use gradient quantization schemes.
    These schemes are often heuristic and fixed over the course of training. We empirically
    observe that the statistics of gradients of deep models change during the training.
    Motivated by this observation, we introduce two adaptive quantization schemes,
    ALQ and AMQ. In both schemes, processors update their compression schemes in parallel
    by efficiently computing sufficient statistics of a parametric distribution. We
    improve the validation accuracy by almost 2% on CIFAR-10 and 1% on ImageNet in
    challenging low-cost communication setups. Our adaptive methods are also significantly
    more robust to the choice of hyperparameters.\r\n\r\n"
acknowledgement: "The authors would like to thank Blair Bilodeau, David Fleet, Mufan
  Li, and Jeffrey Negrea for\r\nhelpful discussions. FF was supported by OGS Scholarship.
  DA and IM were supported the\r\nEuropean Research Council (ERC) under the European
  Union’s Horizon 2020 research and innovation\r\nprogramme (grant agreement No 805223
  ScaleML). DMR was supported by an NSERC Discovery\r\nGrant. ARK was supported by
  NSERC Postdoctoral Fellowship. Resources used in preparing this research were provided,
  in part, by the Province of Ontario, the Government of Canada through CIFAR, and
  companies sponsoring the Vector Institute."
alternative_title:
- NeurIPS
article_processing_charge: No
arxiv: 1
author:
- first_name: 'Fartash '
  full_name: 'Faghri, Fartash '
  last_name: Faghri
- first_name: 'Iman '
  full_name: 'Tabrizian, Iman '
  last_name: Tabrizian
- first_name: Ilia
  full_name: Markov, Ilia
  id: D0CF4148-C985-11E9-8066-0BDEE5697425
  last_name: Markov
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: 'Daniel '
  full_name: 'Roy, Daniel '
  last_name: Roy
- first_name: 'Ali '
  full_name: 'Ramezani-Kebrya, Ali '
  last_name: Ramezani-Kebrya
citation:
  ama: 'Faghri F, Tabrizian I, Markov I, Alistarh D-A, Roy D, Ramezani-Kebrya A. Adaptive
    gradient quantization for data-parallel SGD. In: <i>Advances in Neural Information
    Processing Systems</i>. Vol 33. Neural Information Processing Systems Foundation;
    2020.'
  apa: 'Faghri, F., Tabrizian, I., Markov, I., Alistarh, D.-A., Roy, D., &#38; Ramezani-Kebrya,
    A. (2020). Adaptive gradient quantization for data-parallel SGD. In <i>Advances
    in Neural Information Processing Systems</i> (Vol. 33). Vancouver, Canada: Neural
    Information Processing Systems Foundation.'
  chicago: Faghri, Fartash , Iman  Tabrizian, Ilia Markov, Dan-Adrian Alistarh, Daniel  Roy,
    and Ali  Ramezani-Kebrya. “Adaptive Gradient Quantization for Data-Parallel SGD.”
    In <i>Advances in Neural Information Processing Systems</i>, Vol. 33. Neural Information
    Processing Systems Foundation, 2020.
  ieee: F. Faghri, I. Tabrizian, I. Markov, D.-A. Alistarh, D. Roy, and A. Ramezani-Kebrya,
    “Adaptive gradient quantization for data-parallel SGD,” in <i>Advances in Neural
    Information Processing Systems</i>, Vancouver, Canada, 2020, vol. 33.
  ista: 'Faghri F, Tabrizian I, Markov I, Alistarh D-A, Roy D, Ramezani-Kebrya A.
    2020. Adaptive gradient quantization for data-parallel SGD. Advances in Neural
    Information Processing Systems. NeurIPS: Neural Information Processing Systems,
    NeurIPS, vol. 33.'
  mla: Faghri, Fartash, et al. “Adaptive Gradient Quantization for Data-Parallel SGD.”
    <i>Advances in Neural Information Processing Systems</i>, vol. 33, Neural Information
    Processing Systems Foundation, 2020.
  short: F. Faghri, I. Tabrizian, I. Markov, D.-A. Alistarh, D. Roy, A. Ramezani-Kebrya,
    in:, Advances in Neural Information Processing Systems, Neural Information Processing
    Systems Foundation, 2020.
conference:
  end_date: 2020-12-12
  location: Vancouver, Canada
  name: 'NeurIPS: Neural Information Processing Systems'
  start_date: 2020-12-06
date_created: 2024-03-06T08:35:58Z
date_published: 2020-12-10T00:00:00Z
date_updated: 2025-04-14T07:49:16Z
day: '10'
department:
- _id: DaAl
ec_funded: 1
external_id:
  arxiv:
  - '2010.12460'
intvolume: '        33'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2010.12460
month: '12'
oa: 1
oa_version: Preprint
project:
- _id: 268A44D6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '805223'
  name: Elastic Coordination for Scalable Machine Learning
publication: Advances in Neural Information Processing Systems
publication_identifier:
  isbn:
  - '9781713829546'
publication_status: published
publisher: Neural Information Processing Systems Foundation
quality_controlled: '1'
status: public
title: Adaptive gradient quantization for data-parallel SGD
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 33
year: '2020'
...
---
_id: '15142'
abstract:
- lang: eng
  text: Bacteria and archaea employ CRISPR (clustered, regularly, interspaced, short
    palindromic repeats)-Cas (CRISPR-associated) systems as a type of adaptive immunity
    to target and degrade foreign nucleic acids. While a myriad of CRISPR-Cas systems
    have been identified to date, type I-C is one of the most commonly found subtypes
    in nature. Interestingly, the type I-C system employs a minimal Cascade effector
    complex, which encodes only three unique subunits in its operon. Here, we present
    a 3.1 Å resolution cryo-EM structure of the <jats:italic>Desulfovibrio vulgaris</jats:italic>
    type I-C Cascade, revealing the molecular mechanisms that underlie RNA-directed
    complex assembly. We demonstrate how this minimal Cascade utilizes previously
    overlooked, non-canonical small subunits to stabilize R-loop formation. Furthermore,
    we describe putative PAM and Cas3 binding sites. These findings provide the structural
    basis for harnessing the type I-C Cascade as a genome-engineering tool.
article_number: '5931'
article_processing_charge: Yes
article_type: original
author:
- first_name: Roisin E.
  full_name: O’Brien, Roisin E.
  last_name: O’Brien
- first_name: Inês C.
  full_name: Santos, Inês C.
  last_name: Santos
- first_name: Daniel
  full_name: Wrapp, Daniel
  last_name: Wrapp
- first_name: Jack Peter Kelly
  full_name: Bravo, Jack Peter Kelly
  id: 96aecfa5-8931-11ee-af30-aa6a5d6eee0e
  last_name: Bravo
  orcid: 0000-0003-0456-0753
- first_name: Evan A.
  full_name: Schwartz, Evan A.
  last_name: Schwartz
- first_name: Jennifer S.
  full_name: Brodbelt, Jennifer S.
  last_name: Brodbelt
- first_name: David W.
  full_name: Taylor, David W.
  last_name: Taylor
citation:
  ama: O’Brien RE, Santos IC, Wrapp D, et al. Structural basis for assembly of non-canonical
    small subunits into type I-C Cascade. <i>Nature Communications</i>. 2020;11. doi:<a
    href="https://doi.org/10.1038/s41467-020-19785-8">10.1038/s41467-020-19785-8</a>
  apa: O’Brien, R. E., Santos, I. C., Wrapp, D., Bravo, J. P. K., Schwartz, E. A.,
    Brodbelt, J. S., &#38; Taylor, D. W. (2020). Structural basis for assembly of
    non-canonical small subunits into type I-C Cascade. <i>Nature Communications</i>.
    Springer Nature. <a href="https://doi.org/10.1038/s41467-020-19785-8">https://doi.org/10.1038/s41467-020-19785-8</a>
  chicago: O’Brien, Roisin E., Inês C. Santos, Daniel Wrapp, Jack Peter Kelly Bravo,
    Evan A. Schwartz, Jennifer S. Brodbelt, and David W. Taylor. “Structural Basis
    for Assembly of Non-Canonical Small Subunits into Type I-C Cascade.” <i>Nature
    Communications</i>. Springer Nature, 2020. <a href="https://doi.org/10.1038/s41467-020-19785-8">https://doi.org/10.1038/s41467-020-19785-8</a>.
  ieee: R. E. O’Brien <i>et al.</i>, “Structural basis for assembly of non-canonical
    small subunits into type I-C Cascade,” <i>Nature Communications</i>, vol. 11.
    Springer Nature, 2020.
  ista: O’Brien RE, Santos IC, Wrapp D, Bravo JPK, Schwartz EA, Brodbelt JS, Taylor
    DW. 2020. Structural basis for assembly of non-canonical small subunits into type
    I-C Cascade. Nature Communications. 11, 5931.
  mla: O’Brien, Roisin E., et al. “Structural Basis for Assembly of Non-Canonical
    Small Subunits into Type I-C Cascade.” <i>Nature Communications</i>, vol. 11,
    5931, Springer Nature, 2020, doi:<a href="https://doi.org/10.1038/s41467-020-19785-8">10.1038/s41467-020-19785-8</a>.
  short: R.E. O’Brien, I.C. Santos, D. Wrapp, J.P.K. Bravo, E.A. Schwartz, J.S. Brodbelt,
    D.W. Taylor, Nature Communications 11 (2020).
date_created: 2024-03-20T10:43:07Z
date_published: 2020-11-23T00:00:00Z
date_updated: 2024-06-04T05:52:51Z
day: '23'
doi: 10.1038/s41467-020-19785-8
extern: '1'
external_id:
  pmid:
  - '33230133'
intvolume: '        11'
keyword:
- General Physics and Astronomy
- General Biochemistry
- Genetics and Molecular Biology
- General Chemistry
- Multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1038/s41467-020-19785-8
month: '11'
oa: 1
oa_version: Published Version
pmid: 1
publication: Nature Communications
publication_identifier:
  issn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Structural basis for assembly of non-canonical small subunits into type I-C
  Cascade
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 11
year: '2020'
...
---
_id: '15152'
abstract:
- lang: eng
  text: Transcription factors (TFs) regulate gene expression through chromatin where
    nucleosomes restrict DNA access. To study how TFs bind nucleosome-occupied motifs,
    we focused on the reprogramming factors OCT4 and SOX2 in mouse embryonic stem
    cells. We determined TF engagement throughout a nucleosome at base-pair resolution
    in vitro, enabling structure determination by cryo–electron microscopy at two
    preferred positions. Depending on motif location, OCT4 and SOX2 differentially
    distort nucleosomal DNA. At one position, OCT4-SOX2 removes DNA from histone H2A
    and histone H3; however, at an inverted motif, the TFs only induce local DNA distortions.
    OCT4 uses one of its two DNA-binding domains to engage DNA in both structures,
    reading out a partial motif. These findings explain site-specific nucleosome engagement
    by the pluripotency factors OCT4 and SOX2, and they reveal how TFs distort nucleosomes
    to access chromatinized motifs.
article_processing_charge: No
article_type: original
author:
- first_name: Alicia Kathleen
  full_name: Michael, Alicia Kathleen
  id: 6437c950-2a03-11ee-914d-d6476dd7b75c
  last_name: Michael
  orcid: 0000-0002-6080-839X
- first_name: Ralph S.
  full_name: Grand, Ralph S.
  last_name: Grand
- first_name: Luke
  full_name: Isbel, Luke
  last_name: Isbel
- first_name: Simone
  full_name: Cavadini, Simone
  last_name: Cavadini
- first_name: Zuzanna
  full_name: Kozicka, Zuzanna
  last_name: Kozicka
- first_name: Georg
  full_name: Kempf, Georg
  last_name: Kempf
- first_name: Richard D.
  full_name: Bunker, Richard D.
  last_name: Bunker
- first_name: Andreas D.
  full_name: Schenk, Andreas D.
  last_name: Schenk
- first_name: Alexandra
  full_name: Graff-Meyer, Alexandra
  last_name: Graff-Meyer
- first_name: Ganesh R.
  full_name: Pathare, Ganesh R.
  last_name: Pathare
- first_name: Joscha
  full_name: Weiss, Joscha
  last_name: Weiss
- first_name: Syota
  full_name: Matsumoto, Syota
  last_name: Matsumoto
- first_name: Lukas
  full_name: Burger, Lukas
  last_name: Burger
- first_name: Dirk
  full_name: Schübeler, Dirk
  last_name: Schübeler
- first_name: Nicolas H.
  full_name: Thomä, Nicolas H.
  last_name: Thomä
citation:
  ama: Michael AK, Grand RS, Isbel L, et al. Mechanisms of OCT4-SOX2 motif readout
    on nucleosomes. <i>Science</i>. 2020;368(6498):1460-1465. doi:<a href="https://doi.org/10.1126/science.abb0074">10.1126/science.abb0074</a>
  apa: Michael, A. K., Grand, R. S., Isbel, L., Cavadini, S., Kozicka, Z., Kempf,
    G., … Thomä, N. H. (2020). Mechanisms of OCT4-SOX2 motif readout on nucleosomes.
    <i>Science</i>. American Association for the Advancement of Science . <a href="https://doi.org/10.1126/science.abb0074">https://doi.org/10.1126/science.abb0074</a>
  chicago: Michael, Alicia K., Ralph S. Grand, Luke Isbel, Simone Cavadini, Zuzanna
    Kozicka, Georg Kempf, Richard D. Bunker, et al. “Mechanisms of OCT4-SOX2 Motif
    Readout on Nucleosomes.” <i>Science</i>. American Association for the Advancement
    of Science , 2020. <a href="https://doi.org/10.1126/science.abb0074">https://doi.org/10.1126/science.abb0074</a>.
  ieee: A. K. Michael <i>et al.</i>, “Mechanisms of OCT4-SOX2 motif readout on nucleosomes,”
    <i>Science</i>, vol. 368, no. 6498. American Association for the Advancement of
    Science , pp. 1460–1465, 2020.
  ista: Michael AK, Grand RS, Isbel L, Cavadini S, Kozicka Z, Kempf G, Bunker RD,
    Schenk AD, Graff-Meyer A, Pathare GR, Weiss J, Matsumoto S, Burger L, Schübeler
    D, Thomä NH. 2020. Mechanisms of OCT4-SOX2 motif readout on nucleosomes. Science.
    368(6498), 1460–1465.
  mla: Michael, Alicia K., et al. “Mechanisms of OCT4-SOX2 Motif Readout on Nucleosomes.”
    <i>Science</i>, vol. 368, no. 6498, American Association for the Advancement of
    Science , 2020, pp. 1460–65, doi:<a href="https://doi.org/10.1126/science.abb0074">10.1126/science.abb0074</a>.
  short: A.K. Michael, R.S. Grand, L. Isbel, S. Cavadini, Z. Kozicka, G. Kempf, R.D.
    Bunker, A.D. Schenk, A. Graff-Meyer, G.R. Pathare, J. Weiss, S. Matsumoto, L.
    Burger, D. Schübeler, N.H. Thomä, Science 368 (2020) 1460–1465.
date_created: 2024-03-21T07:54:44Z
date_published: 2020-04-23T00:00:00Z
date_updated: 2024-03-25T12:29:34Z
day: '23'
doi: 10.1126/science.abb0074
extern: '1'
intvolume: '       368'
issue: '6498'
language:
- iso: eng
month: '04'
oa_version: None
page: 1460-1465
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: 'American Association for the Advancement of Science '
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mechanisms of OCT4-SOX2 motif readout on nucleosomes
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 368
year: '2020'
...
---
_id: '15153'
abstract:
- lang: eng
  text: Mammalian circadian rhythms are generated by a transcription-based feedback
    loop in which CLOCK:BMAL1 drives transcription of its repressors (PER1/2, CRY1/2),
    which ultimately interact with CLOCK:BMAL1 to close the feedback loop with ~24
    hr periodicity. Here we pinpoint a key difference between CRY1 and CRY2 that underlies
    their differential strengths as transcriptional repressors. Both cryptochromes
    bind the BMAL1 transactivation domain similarly to sequester it from coactivators
    and repress CLOCK:BMAL1 activity. However, we find that CRY1 is recruited with
    much higher affinity to the PAS domain core of CLOCK:BMAL1, allowing it to serve
    as a stronger repressor that lengthens circadian period. We discovered a dynamic
    serine-rich loop adjacent to the secondary pocket in the photolyase homology region
    (PHR) domain that regulates differential binding of cryptochromes to the PAS domain
    core of CLOCK:BMAL1. Notably, binding of the co-repressor PER2 remodels the serine
    loop of CRY2, making it more CRY1-like and enhancing its affinity for CLOCK:BMAL1.
article_number: '55275'
article_processing_charge: No
article_type: original
author:
- first_name: Jennifer L
  full_name: Fribourgh, Jennifer L
  last_name: Fribourgh
- first_name: Ashutosh
  full_name: Srivastava, Ashutosh
  last_name: Srivastava
- first_name: Colby R
  full_name: Sandate, Colby R
  last_name: Sandate
- first_name: Alicia Kathleen
  full_name: Michael, Alicia Kathleen
  id: 6437c950-2a03-11ee-914d-d6476dd7b75c
  last_name: Michael
- first_name: Peter L
  full_name: Hsu, Peter L
  last_name: Hsu
- first_name: Christin
  full_name: Rakers, Christin
  last_name: Rakers
- first_name: Leslee T
  full_name: Nguyen, Leslee T
  last_name: Nguyen
- first_name: Megan R
  full_name: Torgrimson, Megan R
  last_name: Torgrimson
- first_name: Gian Carlo G
  full_name: Parico, Gian Carlo G
  last_name: Parico
- first_name: Sarvind
  full_name: Tripathi, Sarvind
  last_name: Tripathi
- first_name: Ning
  full_name: Zheng, Ning
  last_name: Zheng
- first_name: Gabriel C
  full_name: Lander, Gabriel C
  last_name: Lander
- first_name: Tsuyoshi
  full_name: Hirota, Tsuyoshi
  last_name: Hirota
- first_name: Florence
  full_name: Tama, Florence
  last_name: Tama
- first_name: Carrie L
  full_name: Partch, Carrie L
  last_name: Partch
citation:
  ama: Fribourgh JL, Srivastava A, Sandate CR, et al. Dynamics at the serine loop
    underlie differential affinity of cryptochromes for CLOCK:BMAL1 to control circadian
    timing. <i>eLife</i>. 2020;9. doi:<a href="https://doi.org/10.7554/elife.55275">10.7554/elife.55275</a>
  apa: Fribourgh, J. L., Srivastava, A., Sandate, C. R., Michael, A. K., Hsu, P. L.,
    Rakers, C., … Partch, C. L. (2020). Dynamics at the serine loop underlie differential
    affinity of cryptochromes for CLOCK:BMAL1 to control circadian timing. <i>ELife</i>.
    eLife Sciences Publications. <a href="https://doi.org/10.7554/elife.55275">https://doi.org/10.7554/elife.55275</a>
  chicago: Fribourgh, Jennifer L, Ashutosh Srivastava, Colby R Sandate, Alicia K.
    Michael, Peter L Hsu, Christin Rakers, Leslee T Nguyen, et al. “Dynamics at the
    Serine Loop Underlie Differential Affinity of Cryptochromes for CLOCK:BMAL1 to
    Control Circadian Timing.” <i>ELife</i>. eLife Sciences Publications, 2020. <a
    href="https://doi.org/10.7554/elife.55275">https://doi.org/10.7554/elife.55275</a>.
  ieee: J. L. Fribourgh <i>et al.</i>, “Dynamics at the serine loop underlie differential
    affinity of cryptochromes for CLOCK:BMAL1 to control circadian timing,” <i>eLife</i>,
    vol. 9. eLife Sciences Publications, 2020.
  ista: Fribourgh JL, Srivastava A, Sandate CR, Michael AK, Hsu PL, Rakers C, Nguyen
    LT, Torgrimson MR, Parico GCG, Tripathi S, Zheng N, Lander GC, Hirota T, Tama
    F, Partch CL. 2020. Dynamics at the serine loop underlie differential affinity
    of cryptochromes for CLOCK:BMAL1 to control circadian timing. eLife. 9, 55275.
  mla: Fribourgh, Jennifer L., et al. “Dynamics at the Serine Loop Underlie Differential
    Affinity of Cryptochromes for CLOCK:BMAL1 to Control Circadian Timing.” <i>ELife</i>,
    vol. 9, 55275, eLife Sciences Publications, 2020, doi:<a href="https://doi.org/10.7554/elife.55275">10.7554/elife.55275</a>.
  short: J.L. Fribourgh, A. Srivastava, C.R. Sandate, A.K. Michael, P.L. Hsu, C. Rakers,
    L.T. Nguyen, M.R. Torgrimson, G.C.G. Parico, S. Tripathi, N. Zheng, G.C. Lander,
    T. Hirota, F. Tama, C.L. Partch, ELife 9 (2020).
date_created: 2024-03-21T07:55:12Z
date_published: 2020-02-26T00:00:00Z
date_updated: 2024-03-25T12:25:02Z
day: '26'
doi: 10.7554/elife.55275
extern: '1'
intvolume: '         9'
keyword:
- General Immunology and Microbiology
- General Biochemistry
- Genetics and Molecular Biology
- General Medicine
- General Neuroscience
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.7554/eLife.55275
month: '02'
oa: 1
oa_version: Published Version
publication: eLife
publication_identifier:
  issn:
  - 2050-084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
scopus_import: '1'
status: public
title: Dynamics at the serine loop underlie differential affinity of cryptochromes
  for CLOCK:BMAL1 to control circadian timing
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 9
year: '2020'
...
---
_id: '15220'
abstract:
- lang: eng
  text: 'A new window is opening in high-energy astronomy: X-ray polarimetry. With
    many missions currently under development and scheduled to launch as early as
    2021, observations of the X-ray polarization of accreting X-ray pulsars will soon
    be available. As polarization is particularly sensitive to the geometry of the
    emission region, the upcoming polarimeters will shed new light on the emission
    mechanism of these objects, provided that we have sound theoretical models that
    agree with current spectroscopic and timing observation and that can make predictions
    of the polarization parameters of the emission. We here present a new model for
    the polarized emission of accreting X-ray pulsars in the accretion column scenario
    that for the first time takes into account the macroscopic structure and dynamics
    of the accretion region and the propagation of the radiation towards the observer,
    including relativistic beaming, gravitational lensing, and quantum electrodynamics.
    In this paper, we present all the details of the model, while in a companion paper,
    we apply our model to predict the polarization parameters of the bright X-ray
    pulsar Hercules X-1.'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Ilaria
  full_name: Caiazzo, Ilaria
  id: 8ae5b6e7-2a03-11ee-914d-b58ed7a3b47d
  last_name: Caiazzo
  orcid: 0000-0002-4770-5388
- first_name: Jeremy
  full_name: Heyl, Jeremy
  last_name: Heyl
citation:
  ama: Caiazzo I, Heyl J. Polarization of accreting X-ray pulsars. I. A new model.
    <i>Monthly Notices of the Royal Astronomical Society</i>. 2020;501(1):109-128.
    doi:<a href="https://doi.org/10.1093/mnras/staa3428">10.1093/mnras/staa3428</a>
  apa: Caiazzo, I., &#38; Heyl, J. (2020). Polarization of accreting X-ray pulsars.
    I. A new model. <i>Monthly Notices of the Royal Astronomical Society</i>. Oxford
    University Press. <a href="https://doi.org/10.1093/mnras/staa3428">https://doi.org/10.1093/mnras/staa3428</a>
  chicago: Caiazzo, Ilaria, and Jeremy Heyl. “Polarization of Accreting X-Ray Pulsars.
    I. A New Model.” <i>Monthly Notices of the Royal Astronomical Society</i>. Oxford
    University Press, 2020. <a href="https://doi.org/10.1093/mnras/staa3428">https://doi.org/10.1093/mnras/staa3428</a>.
  ieee: I. Caiazzo and J. Heyl, “Polarization of accreting X-ray pulsars. I. A new
    model,” <i>Monthly Notices of the Royal Astronomical Society</i>, vol. 501, no.
    1. Oxford University Press, pp. 109–128, 2020.
  ista: Caiazzo I, Heyl J. 2020. Polarization of accreting X-ray pulsars. I. A new
    model. Monthly Notices of the Royal Astronomical Society. 501(1), 109–128.
  mla: Caiazzo, Ilaria, and Jeremy Heyl. “Polarization of Accreting X-Ray Pulsars.
    I. A New Model.” <i>Monthly Notices of the Royal Astronomical Society</i>, vol.
    501, no. 1, Oxford University Press, 2020, pp. 109–28, doi:<a href="https://doi.org/10.1093/mnras/staa3428">10.1093/mnras/staa3428</a>.
  short: I. Caiazzo, J. Heyl, Monthly Notices of the Royal Astronomical Society 501
    (2020) 109–128.
date_created: 2024-03-26T10:33:43Z
date_published: 2020-11-05T00:00:00Z
date_updated: 2024-10-14T12:32:49Z
day: '05'
doi: 10.1093/mnras/staa3428
extern: '1'
external_id:
  arxiv:
  - '2009.00631'
intvolume: '       501'
issue: '1'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2009.00631
month: '11'
oa: 1
oa_version: Preprint
page: 109-128
publication: Monthly Notices of the Royal Astronomical Society
publication_identifier:
  eissn:
  - 1365-2966
  issn:
  - 0035-8711
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Polarization of accreting X-ray pulsars. I. A new model
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 501
year: '2020'
...
---
_id: '15221'
abstract:
- lang: eng
  text: We employ our new model for the polarized emission of accreting X-ray pulsars
    to describe the emission from the luminous X-ray pulsar Hercules X-1. In contrast
    with previous works, our model predicts the polarization parameters independently
    of spectral formation, and considers the structure and dynamics of the accretion
    column, as well as the additional effects on propagation due to general relativity
    and quantum electrodynamics. We find that our model can describe the observed
    pulse fraction and the pulse shape of the main peak, as well as the modulation
    of the cyclotron line with phase. We pick two geometries, assuming a single accretion
    column or two columns at the magnetic poles, that can describe current observations
    of pulse shape and cyclotron modulation with phase. Both models predict a high
    polarization fraction, between 60 and 80 per cent in the 1–10 keV range, that
    is phase and energy dependent, and that peaks at the same phase as the intensity.
    The phase and energy dependence of the polarization fraction and of the polarization
    angle can help discern between the different geometries.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Ilaria
  full_name: Caiazzo, Ilaria
  id: 8ae5b6e7-2a03-11ee-914d-b58ed7a3b47d
  last_name: Caiazzo
  orcid: 0000-0002-4770-5388
- first_name: Jeremy
  full_name: Heyl, Jeremy
  last_name: Heyl
citation:
  ama: Caiazzo I, Heyl J. Polarization of accreting X-ray pulsars – II. Hercules X-1.
    <i>Monthly Notices of the Royal Astronomical Society</i>. 2020;501(1):129-136.
    doi:<a href="https://doi.org/10.1093/mnras/staa3429">10.1093/mnras/staa3429</a>
  apa: Caiazzo, I., &#38; Heyl, J. (2020). Polarization of accreting X-ray pulsars
    – II. Hercules X-1. <i>Monthly Notices of the Royal Astronomical Society</i>.
    Oxford University Press. <a href="https://doi.org/10.1093/mnras/staa3429">https://doi.org/10.1093/mnras/staa3429</a>
  chicago: Caiazzo, Ilaria, and Jeremy Heyl. “Polarization of Accreting X-Ray Pulsars
    – II. Hercules X-1.” <i>Monthly Notices of the Royal Astronomical Society</i>.
    Oxford University Press, 2020. <a href="https://doi.org/10.1093/mnras/staa3429">https://doi.org/10.1093/mnras/staa3429</a>.
  ieee: I. Caiazzo and J. Heyl, “Polarization of accreting X-ray pulsars – II. Hercules
    X-1,” <i>Monthly Notices of the Royal Astronomical Society</i>, vol. 501, no.
    1. Oxford University Press, pp. 129–136, 2020.
  ista: Caiazzo I, Heyl J. 2020. Polarization of accreting X-ray pulsars – II. Hercules
    X-1. Monthly Notices of the Royal Astronomical Society. 501(1), 129–136.
  mla: Caiazzo, Ilaria, and Jeremy Heyl. “Polarization of Accreting X-Ray Pulsars
    – II. Hercules X-1.” <i>Monthly Notices of the Royal Astronomical Society</i>,
    vol. 501, no. 1, Oxford University Press, 2020, pp. 129–36, doi:<a href="https://doi.org/10.1093/mnras/staa3429">10.1093/mnras/staa3429</a>.
  short: I. Caiazzo, J. Heyl, Monthly Notices of the Royal Astronomical Society 501
    (2020) 129–136.
date_created: 2024-03-26T10:34:03Z
date_published: 2020-11-05T00:00:00Z
date_updated: 2024-10-14T12:32:58Z
day: '05'
doi: 10.1093/mnras/staa3429
extern: '1'
external_id:
  arxiv:
  - '2009.00634'
intvolume: '       501'
issue: '1'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2009.00634
month: '11'
oa: 1
oa_version: Preprint
page: 129-136
publication: Monthly Notices of the Royal Astronomical Society
publication_identifier:
  eissn:
  - 1365-2966
  issn:
  - 0035-8711
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Polarization of accreting X-ray pulsars – II. Hercules X-1
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 501
year: '2020'
...
---
_id: '15223'
abstract:
- lang: eng
  text: "Using photometry collected with the Zwicky Transient Facility, we are conducting
    an ongoing survey for binary systems with short orbital periods (\r\n with the
    goal of identifying new gravitational-wave sources detectable by the upcoming
    Laser Interferometer Space Antenna (LISA). We present a sample of 15 binary systems
    discovered thus far, with orbital periods ranging from 6.91 to 56.35 minutes.
    Of the 15 systems, seven are eclipsing systems that do not show signs of significant
    mass transfer. Additionally, we have discovered two AM Canum Venaticorum systems
    and six systems exhibiting primarily ellipsoidal variations in their lightcurves.
    We present follow-up spectroscopy and high-speed photometry confirming the nature
    of these systems, estimates of their LISA signal-to-noise ratios, and a discussion
    of their physical characteristics."
article_number: '32'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Kevin B.
  full_name: Burdge, Kevin B.
  last_name: Burdge
- first_name: Thomas A.
  full_name: Prince, Thomas A.
  last_name: Prince
- first_name: Jim
  full_name: Fuller, Jim
  last_name: Fuller
- first_name: David L.
  full_name: Kaplan, David L.
  last_name: Kaplan
- first_name: Thomas R.
  full_name: Marsh, Thomas R.
  last_name: Marsh
- first_name: Pier-Emmanuel
  full_name: Tremblay, Pier-Emmanuel
  last_name: Tremblay
- first_name: Zhuyun
  full_name: Zhuang, Zhuyun
  last_name: Zhuang
- first_name: Eric C.
  full_name: Bellm, Eric C.
  last_name: Bellm
- first_name: Ilaria
  full_name: Caiazzo, Ilaria
  id: 8ae5b6e7-2a03-11ee-914d-b58ed7a3b47d
  last_name: Caiazzo
  orcid: 0000-0002-4770-5388
- first_name: Michael W.
  full_name: Coughlin, Michael W.
  last_name: Coughlin
- first_name: Vik S.
  full_name: Dhillon, Vik S.
  last_name: Dhillon
- first_name: Boris
  full_name: Gaensicke, Boris
  last_name: Gaensicke
- first_name: Pablo
  full_name: Rodríguez-Gil, Pablo
  last_name: Rodríguez-Gil
- first_name: Matthew J.
  full_name: Graham, Matthew J.
  last_name: Graham
- first_name: JJ
  full_name: Hermes, JJ
  last_name: Hermes
- first_name: Thomas
  full_name: Kupfer, Thomas
  last_name: Kupfer
- first_name: S. P.
  full_name: Littlefair, S. P.
  last_name: Littlefair
- first_name: Przemek
  full_name: Mróz, Przemek
  last_name: Mróz
- first_name: E. S.
  full_name: Phinney, E. S.
  last_name: Phinney
- first_name: Jan van
  full_name: Roestel, Jan van
  last_name: Roestel
- first_name: Yuhan
  full_name: Yao, Yuhan
  last_name: Yao
- first_name: Richard G.
  full_name: Dekany, Richard G.
  last_name: Dekany
- first_name: Andrew J.
  full_name: Drake, Andrew J.
  last_name: Drake
- first_name: Dmitry A.
  full_name: Duev, Dmitry A.
  last_name: Duev
- first_name: David
  full_name: Hale, David
  last_name: Hale
- first_name: Michael
  full_name: Feeney, Michael
  last_name: Feeney
- first_name: George
  full_name: Helou, George
  last_name: Helou
- first_name: Stephen
  full_name: Kaye, Stephen
  last_name: Kaye
- first_name: Ashish. A.
  full_name: Mahabal, Ashish. A.
  last_name: Mahabal
- first_name: Frank J.
  full_name: Masci, Frank J.
  last_name: Masci
- first_name: Reed
  full_name: Riddle, Reed
  last_name: Riddle
- first_name: Roger
  full_name: Smith, Roger
  last_name: Smith
- first_name: Maayane T.
  full_name: Soumagnac, Maayane T.
  last_name: Soumagnac
- first_name: S. R.
  full_name: Kulkarni, S. R.
  last_name: Kulkarni
citation:
  ama: Burdge KB, Prince TA, Fuller J, et al. A systematic search of Zwicky transient
    facility data for ultracompact binary LISA-detectable gravitational-wave sources.
    <i>The Astrophysical Journal</i>. 2020;905(1). doi:<a href="https://doi.org/10.3847/1538-4357/abc261">10.3847/1538-4357/abc261</a>
  apa: Burdge, K. B., Prince, T. A., Fuller, J., Kaplan, D. L., Marsh, T. R., Tremblay,
    P.-E., … Kulkarni, S. R. (2020). A systematic search of Zwicky transient facility
    data for ultracompact binary LISA-detectable gravitational-wave sources. <i>The
    Astrophysical Journal</i>. American Astronomical Society. <a href="https://doi.org/10.3847/1538-4357/abc261">https://doi.org/10.3847/1538-4357/abc261</a>
  chicago: Burdge, Kevin B., Thomas A. Prince, Jim Fuller, David L. Kaplan, Thomas
    R. Marsh, Pier-Emmanuel Tremblay, Zhuyun Zhuang, et al. “A Systematic Search of
    Zwicky Transient Facility Data for Ultracompact Binary LISA-Detectable Gravitational-Wave
    Sources.” <i>The Astrophysical Journal</i>. American Astronomical Society, 2020.
    <a href="https://doi.org/10.3847/1538-4357/abc261">https://doi.org/10.3847/1538-4357/abc261</a>.
  ieee: K. B. Burdge <i>et al.</i>, “A systematic search of Zwicky transient facility
    data for ultracompact binary LISA-detectable gravitational-wave sources,” <i>The
    Astrophysical Journal</i>, vol. 905, no. 1. American Astronomical Society, 2020.
  ista: Burdge KB, Prince TA, Fuller J, Kaplan DL, Marsh TR, Tremblay P-E, Zhuang
    Z, Bellm EC, Caiazzo I, Coughlin MW, Dhillon VS, Gaensicke B, Rodríguez-Gil P,
    Graham MJ, Hermes J, Kupfer T, Littlefair SP, Mróz P, Phinney ES, Roestel J van,
    Yao Y, Dekany RG, Drake AJ, Duev DA, Hale D, Feeney M, Helou G, Kaye S, Mahabal
    AA, Masci FJ, Riddle R, Smith R, Soumagnac MT, Kulkarni SR. 2020. A systematic
    search of Zwicky transient facility data for ultracompact binary LISA-detectable
    gravitational-wave sources. The Astrophysical Journal. 905(1), 32.
  mla: Burdge, Kevin B., et al. “A Systematic Search of Zwicky Transient Facility
    Data for Ultracompact Binary LISA-Detectable Gravitational-Wave Sources.” <i>The
    Astrophysical Journal</i>, vol. 905, no. 1, 32, American Astronomical Society,
    2020, doi:<a href="https://doi.org/10.3847/1538-4357/abc261">10.3847/1538-4357/abc261</a>.
  short: K.B. Burdge, T.A. Prince, J. Fuller, D.L. Kaplan, T.R. Marsh, P.-E. Tremblay,
    Z. Zhuang, E.C. Bellm, I. Caiazzo, M.W. Coughlin, V.S. Dhillon, B. Gaensicke,
    P. Rodríguez-Gil, M.J. Graham, J. Hermes, T. Kupfer, S.P. Littlefair, P. Mróz,
    E.S. Phinney, J. van Roestel, Y. Yao, R.G. Dekany, A.J. Drake, D.A. Duev, D. Hale,
    M. Feeney, G. Helou, S. Kaye, A.A. Mahabal, F.J. Masci, R. Riddle, R. Smith, M.T.
    Soumagnac, S.R. Kulkarni, The Astrophysical Journal 905 (2020).
date_created: 2024-03-26T10:34:42Z
date_published: 2020-12-09T00:00:00Z
date_updated: 2024-04-03T14:13:50Z
day: '09'
doi: 10.3847/1538-4357/abc261
extern: '1'
external_id:
  arxiv:
  - '2009.02567'
intvolume: '       905'
issue: '1'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2009.02567
month: '12'
oa: 1
oa_version: Preprint
publication: The Astrophysical Journal
publication_identifier:
  eissn:
  - 1538-4357
  issn:
  - 0004-637X
publication_status: published
publisher: American Astronomical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: A systematic search of Zwicky transient facility data for ultracompact binary
  LISA-detectable gravitational-wave sources
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 905
year: '2020'
...
---
_id: '15224'
abstract:
- lang: eng
  text: When a star exhausts its nuclear fuel, it either explodes as a supernova or
    more quiescently becomes a white dwarf, an object about half the mass of our Sun
    with a radius of about that of the Earth. About one-fifth of white dwarfs exhibit
    the presence of magnetic fields, whose origin has long been debated as either
    the product of previous stages of evolution or of binary interactions. We here
    report the discovery of two massive and magnetic white-dwarf members of young
    star clusters in the Gaia second data release (DR2) database, while a third massive
    and magnetic cluster white dwarf was already reported in a previous paper. These
    stars are most likely the product of single-star evolution and therefore challenge
    the merger scenario as the only way to produce magnetic white dwarfs. The progenitor
    masses of these stars are all above 5 solar masses, and there are only two other
    cluster white dwarfs whose distances have been unambiguously measured with Gaia
    and whose progenitors' masses fall in this range. This high incidence of magnetic
    white dwarfs indicates that intermediate-mass progenitors are more likely to produce
    magnetic remnants and that a fraction of magnetic white dwarfs forms from intermediate-mass
    stars.
article_number: L14
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Ilaria
  full_name: Caiazzo, Ilaria
  id: 8ae5b6e7-2a03-11ee-914d-b58ed7a3b47d
  last_name: Caiazzo
  orcid: 0000-0002-4770-5388
- first_name: Jeremy
  full_name: Heyl, Jeremy
  last_name: Heyl
- first_name: Harvey
  full_name: Richer, Harvey
  last_name: Richer
- first_name: Jeffrey
  full_name: Cummings, Jeffrey
  last_name: Cummings
- first_name: Leesa
  full_name: Fleury, Leesa
  last_name: Fleury
- first_name: James
  full_name: Hegarty, James
  last_name: Hegarty
- first_name: Jason
  full_name: Kalirai, Jason
  last_name: Kalirai
- first_name: Ronan
  full_name: Kerr, Ronan
  last_name: Kerr
- first_name: Sarah
  full_name: Thiele, Sarah
  last_name: Thiele
- first_name: Pier-Emmanuel
  full_name: Tremblay, Pier-Emmanuel
  last_name: Tremblay
- first_name: Michael
  full_name: Villanueva, Michael
  last_name: Villanueva
citation:
  ama: Caiazzo I, Heyl J, Richer H, et al. Intermediate-mass stars become magnetic
    white dwarfs. <i>The Astrophysical Journal Letters</i>. 2020;901(1). doi:<a href="https://doi.org/10.3847/2041-8213/abb5f7">10.3847/2041-8213/abb5f7</a>
  apa: Caiazzo, I., Heyl, J., Richer, H., Cummings, J., Fleury, L., Hegarty, J., …
    Villanueva, M. (2020). Intermediate-mass stars become magnetic white dwarfs. <i>The
    Astrophysical Journal Letters</i>. American Astronomical Society. <a href="https://doi.org/10.3847/2041-8213/abb5f7">https://doi.org/10.3847/2041-8213/abb5f7</a>
  chicago: Caiazzo, Ilaria, Jeremy Heyl, Harvey Richer, Jeffrey Cummings, Leesa Fleury,
    James Hegarty, Jason Kalirai, et al. “Intermediate-Mass Stars Become Magnetic
    White Dwarfs.” <i>The Astrophysical Journal Letters</i>. American Astronomical
    Society, 2020. <a href="https://doi.org/10.3847/2041-8213/abb5f7">https://doi.org/10.3847/2041-8213/abb5f7</a>.
  ieee: I. Caiazzo <i>et al.</i>, “Intermediate-mass stars become magnetic white dwarfs,”
    <i>The Astrophysical Journal Letters</i>, vol. 901, no. 1. American Astronomical
    Society, 2020.
  ista: Caiazzo I, Heyl J, Richer H, Cummings J, Fleury L, Hegarty J, Kalirai J, Kerr
    R, Thiele S, Tremblay P-E, Villanueva M. 2020. Intermediate-mass stars become
    magnetic white dwarfs. The Astrophysical Journal Letters. 901(1), L14.
  mla: Caiazzo, Ilaria, et al. “Intermediate-Mass Stars Become Magnetic White Dwarfs.”
    <i>The Astrophysical Journal Letters</i>, vol. 901, no. 1, L14, American Astronomical
    Society, 2020, doi:<a href="https://doi.org/10.3847/2041-8213/abb5f7">10.3847/2041-8213/abb5f7</a>.
  short: I. Caiazzo, J. Heyl, H. Richer, J. Cummings, L. Fleury, J. Hegarty, J. Kalirai,
    R. Kerr, S. Thiele, P.-E. Tremblay, M. Villanueva, The Astrophysical Journal Letters
    901 (2020).
date_created: 2024-03-26T10:35:02Z
date_published: 2020-09-22T00:00:00Z
date_updated: 2024-10-14T12:33:09Z
day: '22'
doi: 10.3847/2041-8213/abb5f7
extern: '1'
external_id:
  arxiv:
  - '2009.03374'
intvolume: '       901'
issue: '1'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2009.03374
month: '09'
oa: 1
oa_version: Preprint
publication: The Astrophysical Journal Letters
publication_identifier:
  eissn:
  - 2041-8213
  issn:
  - 2041-8205
publication_status: published
publisher: American Astronomical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Intermediate-mass stars become magnetic white dwarfs
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 901
year: '2020'
...
---
_id: '15228'
abstract:
- lang: eng
  text: We describe a new implementation of a broad-band soft X-ray polarimeter, substantially
    based on a previous design. This implementation, the Pioneer Soft X-ray Polarimeter
    (PiSoX) is a SmallSat, designed for NASA’s call for Astrophysics Pioneers, small
    missions that could be CubeSats, balloon experiments, or SmallSats. As in REDSoX,
    the grating arrangement is designed optimally for the purpose of polarimetry with
    broad-band focussing optics by matching the dispersion of the spectrometer channels
    to laterally graded multilayers (LGMLs). The system can achieve polarization modulation
    factors over 90%. For PiSoX, the optics are lightweight Si mirrors in a one-bounce
    parabolic configuration. High efficiency, blazed gratings from opposite sectors
    are oriented to disperse to a LGML forming a channel covering the wavelength range
    from 35 Å to 75 Å (165 - 350 eV). Upon satellite rotation, the intensities of
    the dispersed spectra, after reflection and polarizing by the LGMLs, give the
    three Stokes parameters needed to determine a source’s linear polarization fraction
    and orientation. The design can be extended to higher energies as LGMLs are developed
    further. We describe examples of the potential scientific return from instruments
    based on this design.
article_number: 114442Y
article_processing_charge: No
arxiv: 1
author:
- first_name: Herman L.
  full_name: Marshall, Herman L.
  last_name: Marshall
- first_name: Sarah
  full_name: Heine, Sarah
  last_name: Heine
- first_name: Alan
  full_name: Garner, Alan
  last_name: Garner
- first_name: Eric
  full_name: Gullikson, Eric
  last_name: Gullikson
- first_name: Moritz
  full_name: Guenther, Moritz
  last_name: Guenther
- first_name: Christopher
  full_name: Leitz, Christopher
  last_name: Leitz
- first_name: Rebecca
  full_name: Masterson, Rebecca
  last_name: Masterson
- first_name: Eric
  full_name: Miller, Eric
  last_name: Miller
- first_name: William
  full_name: Zhang, William
  last_name: Zhang
- first_name: Rozenn
  full_name: Boissay Malaquin, Rozenn
  last_name: Boissay Malaquin
- first_name: Ilaria
  full_name: Caiazzo, Ilaria
  id: 8ae5b6e7-2a03-11ee-914d-b58ed7a3b47d
  last_name: Caiazzo
  orcid: 0000-0002-4770-5388
- first_name: Deepto
  full_name: Chakrabarty, Deepto
  last_name: Chakrabarty
- first_name: Rosemary
  full_name: Davidson, Rosemary
  last_name: Davidson
- first_name: Luigi
  full_name: Gallo, Luigi
  last_name: Gallo
- first_name: Ralf K.
  full_name: Heilmann, Ralf K.
  last_name: Heilmann
- first_name: Jeremy
  full_name: Heyl, Jeremy
  last_name: Heyl
- first_name: Erin
  full_name: Kara, Erin
  last_name: Kara
- first_name: Alan
  full_name: Marscher, Alan
  last_name: Marscher
- first_name: Norbert
  full_name: Schulz, Norbert
  last_name: Schulz
citation:
  ama: 'Marshall HL, Heine S, Garner A, et al. A small satellite version of a soft
    x-ray polarimeter. In: <i>Space Telescopes and Instrumentation 2020: Ultraviolet
    to Gamma Ray</i>. Vol 11444. SPIE; 2020. doi:<a href="https://doi.org/10.1117/12.2562811">10.1117/12.2562811</a>'
  apa: 'Marshall, H. L., Heine, S., Garner, A., Gullikson, E., Guenther, M., Leitz,
    C., … Schulz, N. (2020). A small satellite version of a soft x-ray polarimeter.
    In <i>Space Telescopes and Instrumentation 2020: Ultraviolet to Gamma Ray</i>
    (Vol. 11444). Virtual: SPIE. <a href="https://doi.org/10.1117/12.2562811">https://doi.org/10.1117/12.2562811</a>'
  chicago: 'Marshall, Herman L., Sarah Heine, Alan Garner, Eric Gullikson, Moritz
    Guenther, Christopher Leitz, Rebecca Masterson, et al. “A Small Satellite Version
    of a Soft X-Ray Polarimeter.” In <i>Space Telescopes and Instrumentation 2020:
    Ultraviolet to Gamma Ray</i>, Vol. 11444. SPIE, 2020. <a href="https://doi.org/10.1117/12.2562811">https://doi.org/10.1117/12.2562811</a>.'
  ieee: 'H. L. Marshall <i>et al.</i>, “A small satellite version of a soft x-ray
    polarimeter,” in <i>Space Telescopes and Instrumentation 2020: Ultraviolet to
    Gamma Ray</i>, Virtual, 2020, vol. 11444.'
  ista: 'Marshall HL, Heine S, Garner A, Gullikson E, Guenther M, Leitz C, Masterson
    R, Miller E, Zhang W, Boissay Malaquin R, Caiazzo I, Chakrabarty D, Davidson R,
    Gallo L, Heilmann RK, Heyl J, Kara E, Marscher A, Schulz N. 2020. A small satellite
    version of a soft x-ray polarimeter. Space Telescopes and Instrumentation 2020:
    Ultraviolet to Gamma Ray. Astronomical Telescopes + Instrumentation vol. 11444,
    114442Y.'
  mla: 'Marshall, Herman L., et al. “A Small Satellite Version of a Soft X-Ray Polarimeter.”
    <i>Space Telescopes and Instrumentation 2020: Ultraviolet to Gamma Ray</i>, vol.
    11444, 114442Y, SPIE, 2020, doi:<a href="https://doi.org/10.1117/12.2562811">10.1117/12.2562811</a>.'
  short: 'H.L. Marshall, S. Heine, A. Garner, E. Gullikson, M. Guenther, C. Leitz,
    R. Masterson, E. Miller, W. Zhang, R. Boissay Malaquin, I. Caiazzo, D. Chakrabarty,
    R. Davidson, L. Gallo, R.K. Heilmann, J. Heyl, E. Kara, A. Marscher, N. Schulz,
    in:, Space Telescopes and Instrumentation 2020: Ultraviolet to Gamma Ray, SPIE,
    2020.'
conference:
  end_date: 2020-12-18
  location: Virtual
  name: Astronomical Telescopes + Instrumentation
  start_date: 2020-12-14
date_created: 2024-03-26T10:36:20Z
date_published: 2020-12-13T00:00:00Z
date_updated: 2024-04-08T06:58:50Z
day: '13'
doi: 10.1117/12.2562811
extern: '1'
external_id:
  arxiv:
  - '2012.02829'
intvolume: '     11444'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2012.02829
month: '12'
oa: 1
oa_version: Preprint
publication: 'Space Telescopes and Instrumentation 2020: Ultraviolet to Gamma Ray'
publication_identifier:
  eissn:
  - 1996-756X
  isbn:
  - 978-151063675-0
publication_status: published
publisher: SPIE
quality_controlled: '1'
scopus_import: '1'
status: public
title: A small satellite version of a soft x-ray polarimeter
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 11444
year: '2020'
...
---
_id: '15229'
abstract:
- lang: eng
  text: 'We propose a high-time-resolution, high-spectral-resolution X-ray telescope
    that uses transition-edge sensors (TES) as detectors and collector optics to direct
    the X-rays onto the focal plane, providing a large effective area in a small satellite.
    The key science driver of the instrument is to study neutron stars and accreting
    black holes. The proposed instrument is built upon two technologies that are already
    at high TRL: TES X-ray detectors and collector optics.'
article_number: 114442A
article_processing_charge: No
author:
- first_name: Jeremy
  full_name: Heyl, Jeremy
  last_name: Heyl
- first_name: Ilaria
  full_name: Caiazzo, Ilaria
  id: 8ae5b6e7-2a03-11ee-914d-b58ed7a3b47d
  last_name: Caiazzo
  orcid: 0000-0002-4770-5388
- first_name: Sarah
  full_name: Gallagher, Sarah
  last_name: Gallagher
- first_name: Kelsey
  full_name: Hoffman, Kelsey
  last_name: Hoffman
- first_name: Samar
  full_name: Safi-Harb, Samar
  last_name: Safi-Harb
citation:
  ama: 'Heyl J, Caiazzo I, Gallagher S, Hoffman K, Safi-Harb S. The Colibrì high-resolution
    x-ray telescope. In: <i>Space Telescopes and Instrumentation 2020: Ultraviolet
    to Gamma Ray</i>. Vol 11444. SPIE; 2020. doi:<a href="https://doi.org/10.1117/12.2562625">10.1117/12.2562625</a>'
  apa: 'Heyl, J., Caiazzo, I., Gallagher, S., Hoffman, K., &#38; Safi-Harb, S. (2020).
    The Colibrì high-resolution x-ray telescope. In <i>Space Telescopes and Instrumentation
    2020: Ultraviolet to Gamma Ray</i> (Vol. 11444). Virtual: SPIE. <a href="https://doi.org/10.1117/12.2562625">https://doi.org/10.1117/12.2562625</a>'
  chicago: 'Heyl, Jeremy, Ilaria Caiazzo, Sarah Gallagher, Kelsey Hoffman, and Samar
    Safi-Harb. “The Colibrì High-Resolution x-Ray Telescope.” In <i>Space Telescopes
    and Instrumentation 2020: Ultraviolet to Gamma Ray</i>, Vol. 11444. SPIE, 2020.
    <a href="https://doi.org/10.1117/12.2562625">https://doi.org/10.1117/12.2562625</a>.'
  ieee: 'J. Heyl, I. Caiazzo, S. Gallagher, K. Hoffman, and S. Safi-Harb, “The Colibrì
    high-resolution x-ray telescope,” in <i>Space Telescopes and Instrumentation 2020:
    Ultraviolet to Gamma Ray</i>, Virtual, 2020, vol. 11444.'
  ista: 'Heyl J, Caiazzo I, Gallagher S, Hoffman K, Safi-Harb S. 2020. The Colibrì
    high-resolution x-ray telescope. Space Telescopes and Instrumentation 2020: Ultraviolet
    to Gamma Ray. Astronomical Telescopes + Instrumentation vol. 11444, 114442A.'
  mla: 'Heyl, Jeremy, et al. “The Colibrì High-Resolution x-Ray Telescope.” <i>Space
    Telescopes and Instrumentation 2020: Ultraviolet to Gamma Ray</i>, vol. 11444,
    114442A, SPIE, 2020, doi:<a href="https://doi.org/10.1117/12.2562625">10.1117/12.2562625</a>.'
  short: 'J. Heyl, I. Caiazzo, S. Gallagher, K. Hoffman, S. Safi-Harb, in:, Space
    Telescopes and Instrumentation 2020: Ultraviolet to Gamma Ray, SPIE, 2020.'
conference:
  end_date: 2020-12-18
  location: Virtual
  name: Astronomical Telescopes + Instrumentation
  start_date: 2020-12-14
date_created: 2024-03-26T10:36:40Z
date_published: 2020-12-13T00:00:00Z
date_updated: 2024-04-08T06:59:43Z
day: '13'
doi: 10.1117/12.2562625
extern: '1'
intvolume: '     11444'
language:
- iso: eng
month: '12'
oa_version: None
publication: 'Space Telescopes and Instrumentation 2020: Ultraviolet to Gamma Ray'
publication_identifier:
  eissn:
  - 1996-756X
  isbn:
  - 978-151063675-0
publication_status: published
publisher: SPIE
quality_controlled: '1'
scopus_import: '1'
status: public
title: The Colibrì high-resolution x-ray telescope
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 11444
year: '2020'
...
---
_id: '15286'
article_processing_charge: No
article_type: original
author:
- first_name: Florian
  full_name: Fäßler, Florian
  id: 404F5528-F248-11E8-B48F-1D18A9856A87
  last_name: Fäßler
  orcid: 0000-0001-7149-769X
- first_name: Georgi A
  full_name: Dimchev, Georgi A
  id: 38C393BE-F248-11E8-B48F-1D18A9856A87
  last_name: Dimchev
  orcid: 0000-0001-8370-6161
- first_name: Victor-Valentin
  full_name: Hodirnau, Victor-Valentin
  id: 3661B498-F248-11E8-B48F-1D18A9856A87
  last_name: Hodirnau
  orcid: 0000-0003-3904-947X
- first_name: Bettina
  full_name: Zens, Bettina
  id: 45FD126C-F248-11E8-B48F-1D18A9856A87
  last_name: Zens
  orcid: 0000-0002-9561-1239
- first_name: Christoph
  full_name: Möhl, Christoph
  last_name: Möhl
- first_name: Frank
  full_name: Bradke, Frank
  last_name: Bradke
- first_name: Florian KM
  full_name: Schur, Florian KM
  id: 48AD8942-F248-11E8-B48F-1D18A9856A87
  last_name: Schur
  orcid: 0000-0003-4790-8078
citation:
  ama: Fäßler F, Dimchev GA, Hodirnau V-V, et al. Cryo-electron tomography workflows
    for quantitative analysis of actin networks involved in cell migration. <i>Microscopy
    and Microanalysis</i>. 2020;26(S2):2518-2519. doi:<a href="https://doi.org/10.1017/s1431927620021881">10.1017/s1431927620021881</a>
  apa: Fäßler, F., Dimchev, G. A., Hodirnau, V.-V., Zens, B., Möhl, C., Bradke, F.,
    &#38; Schur, F. K. (2020). Cryo-electron tomography workflows for quantitative
    analysis of actin networks involved in cell migration. <i>Microscopy and Microanalysis</i>.
    Oxford University Press. <a href="https://doi.org/10.1017/s1431927620021881">https://doi.org/10.1017/s1431927620021881</a>
  chicago: Fäßler, Florian, Georgi A Dimchev, Victor-Valentin Hodirnau, Bettina Zens,
    Christoph Möhl, Frank Bradke, and Florian KM Schur. “Cryo-Electron Tomography
    Workflows for Quantitative Analysis of Actin Networks Involved in Cell Migration.”
    <i>Microscopy and Microanalysis</i>. Oxford University Press, 2020. <a href="https://doi.org/10.1017/s1431927620021881">https://doi.org/10.1017/s1431927620021881</a>.
  ieee: F. Fäßler <i>et al.</i>, “Cryo-electron tomography workflows for quantitative
    analysis of actin networks involved in cell migration,” <i>Microscopy and Microanalysis</i>,
    vol. 26, no. S2. Oxford University Press, pp. 2518–2519, 2020.
  ista: Fäßler F, Dimchev GA, Hodirnau V-V, Zens B, Möhl C, Bradke F, Schur FK. 2020.
    Cryo-electron tomography workflows for quantitative analysis of actin networks
    involved in cell migration. Microscopy and Microanalysis. 26(S2), 2518–2519.
  mla: Fäßler, Florian, et al. “Cryo-Electron Tomography Workflows for Quantitative
    Analysis of Actin Networks Involved in Cell Migration.” <i>Microscopy and Microanalysis</i>,
    vol. 26, no. S2, Oxford University Press, 2020, pp. 2518–19, doi:<a href="https://doi.org/10.1017/s1431927620021881">10.1017/s1431927620021881</a>.
  short: F. Fäßler, G.A. Dimchev, V.-V. Hodirnau, B. Zens, C. Möhl, F. Bradke, F.K.
    Schur, Microscopy and Microanalysis 26 (2020) 2518–2519.
corr_author: '1'
date_created: 2024-04-03T09:40:11Z
date_published: 2020-08-01T00:00:00Z
date_updated: 2024-10-09T21:08:43Z
day: '01'
department:
- _id: FlSc
- _id: EM-Fac
doi: 10.1017/s1431927620021881
intvolume: '        26'
issue: S2
keyword:
- Instrumentation
language:
- iso: eng
month: '08'
oa_version: None
page: 2518-2519
publication: Microscopy and Microanalysis
publication_identifier:
  eissn:
  - 1435-8115
  issn:
  - 1431-9276
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
status: public
title: Cryo-electron tomography workflows for quantitative analysis of actin networks
  involved in cell migration
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 26
year: '2020'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '19306'
acknowledgement: "We thank Maureen Barr, Martin Harterink, Max Heiman and Inna Nechipurenko
  for reagents, the Caenorhabditis Genetics Center for strains, and the Sengupta lab
  for comments and advice.\r\nThis work was funded in part by the NIH (R35 GM122463
  – P.S., and F32 DC018453 – A.P.), and the EMBO (ALTF 302-2019 – N.A-W.)."
article_number: '303'
article_processing_charge: Yes
article_type: original
author:
- first_name: Anna
  full_name: Kazatskaya, Anna
  last_name: Kazatskaya
- first_name: Lisa
  full_name: Yuan, Lisa
  last_name: Yuan
- first_name: Niko Paresh
  full_name: Amin-Wetzel, Niko Paresh
  id: E95D3014-9D8C-11E9-9C80-D2F8E5697425
  last_name: Amin-Wetzel
- first_name: Alison
  full_name: Philbrook, Alison
  last_name: Philbrook
- first_name: Mario
  full_name: de Bono, Mario
  id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
  last_name: de Bono
  orcid: 0000-0001-8347-0443
- first_name: Piali
  full_name: Sengupta, Piali
  last_name: Sengupta
citation:
  ama: Kazatskaya A, Yuan L, Amin-Wetzel NP, Philbrook A, de Bono M, Sengupta P. The
    URX oxygen-sensing neurons in C. elegans are ciliated. <i>microPublication Biology</i>.
    2020;2020(9). doi:<a href="https://doi.org/10.17912/MICROPUB.BIOLOGY.000303">10.17912/MICROPUB.BIOLOGY.000303</a>
  apa: Kazatskaya, A., Yuan, L., Amin-Wetzel, N. P., Philbrook, A., de Bono, M., &#38;
    Sengupta, P. (2020). The URX oxygen-sensing neurons in C. elegans are ciliated.
    <i>MicroPublication Biology</i>. Caltech Library. <a href="https://doi.org/10.17912/MICROPUB.BIOLOGY.000303">https://doi.org/10.17912/MICROPUB.BIOLOGY.000303</a>
  chicago: Kazatskaya, Anna, Lisa Yuan, Niko Paresh Amin-Wetzel, Alison Philbrook,
    Mario de Bono, and Piali Sengupta. “The URX Oxygen-Sensing Neurons in C. Elegans
    Are Ciliated.” <i>MicroPublication Biology</i>. Caltech Library, 2020. <a href="https://doi.org/10.17912/MICROPUB.BIOLOGY.000303">https://doi.org/10.17912/MICROPUB.BIOLOGY.000303</a>.
  ieee: A. Kazatskaya, L. Yuan, N. P. Amin-Wetzel, A. Philbrook, M. de Bono, and P.
    Sengupta, “The URX oxygen-sensing neurons in C. elegans are ciliated,” <i>microPublication
    Biology</i>, vol. 2020, no. 9. Caltech Library, 2020.
  ista: Kazatskaya A, Yuan L, Amin-Wetzel NP, Philbrook A, de Bono M, Sengupta P.
    2020. The URX oxygen-sensing neurons in C. elegans are ciliated. microPublication
    Biology. 2020(9), 303.
  mla: Kazatskaya, Anna, et al. “The URX Oxygen-Sensing Neurons in C. Elegans Are
    Ciliated.” <i>MicroPublication Biology</i>, vol. 2020, no. 9, 303, Caltech Library,
    2020, doi:<a href="https://doi.org/10.17912/MICROPUB.BIOLOGY.000303">10.17912/MICROPUB.BIOLOGY.000303</a>.
  short: A. Kazatskaya, L. Yuan, N.P. Amin-Wetzel, A. Philbrook, M. de Bono, P. Sengupta,
    MicroPublication Biology 2020 (2020).
date_created: 2025-03-07T08:21:51Z
date_published: 2020-09-20T00:00:00Z
date_updated: 2025-03-11T08:30:41Z
day: '20'
ddc:
- '570'
department:
- _id: MaDe
doi: 10.17912/MICROPUB.BIOLOGY.000303
external_id:
  pmid:
  - '33005885'
file:
- access_level: open_access
  checksum: 14a7cad20775521ce85e0e3c77aa7936
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  date_updated: 2025-03-11T08:27:40Z
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  file_name: 2020_MicroPublBio_Kazatskaya.pdf
  file_size: 1486239
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  success: 1
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has_accepted_license: '1'
intvolume: '      2020'
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language:
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month: '09'
oa: 1
oa_version: Published Version
pmid: 1
publication: microPublication Biology
publication_identifier:
  eissn:
  - 2578-9430
publication_status: published
publisher: Caltech Library
quality_controlled: '1'
status: public
title: The URX oxygen-sensing neurons in C. elegans are ciliated
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2020
year: '2020'
...
---
_id: '5681'
abstract:
- lang: eng
  text: 'We introduce dynamically warping grids for adaptive liquid simulation. Our
    primary contributions are a strategy for dynamically deforming regular grids over
    the course of a simulation and a method for efficiently utilizing these deforming
    grids for liquid simulation. Prior work has shown that unstructured grids are
    very effective for adaptive fluid simulations. However, unstructured grids often
    lead to complicated implementations and a poor cache hit rate due to inconsistent
    memory access. Regular grids, on the other hand, provide a fast, fixed memory
    access pattern and straightforward implementation. Our method combines the advantages
    of both: we leverage the simplicity of regular grids while still achieving practical
    and controllable spatial adaptivity. We demonstrate that our method enables adaptive
    simulations that are fast, flexible, and robust to null-space issues. At the same
    time, our method is simple to implement and takes advantage of existing highly-tuned
    algorithms.'
acknowledged_ssus:
- _id: ScienComp
acknowledgement: This work was partially supported by JSPS Grant-in-Aid forYoung Scientists
  (Start-up) 16H07410, the ERC StartingGrantsrealFlow(StG-2015-637014) andBigSplash(StG-2014-638176).
  This research was supported by the Scientific Ser-vice Units (SSU) of IST Austria
  through resources providedby Scientific Computing. We would like to express my grati-tude
  to Nobuyuki Umetani and Tomas Skrivan for insight-ful discussion.
article_processing_charge: No
article_type: original
author:
- first_name: Ibayashi
  full_name: Hikaru, Ibayashi
  last_name: Hikaru
- first_name: Christopher J
  full_name: Wojtan, Christopher J
  id: 3C61F1D2-F248-11E8-B48F-1D18A9856A87
  last_name: Wojtan
  orcid: 0000-0001-6646-5546
- first_name: Nils
  full_name: Thuerey, Nils
  last_name: Thuerey
- first_name: Takeo
  full_name: Igarashi, Takeo
  last_name: Igarashi
- first_name: Ryoichi
  full_name: Ando, Ryoichi
  last_name: Ando
citation:
  ama: Hikaru I, Wojtan C, Thuerey N, Igarashi T, Ando R. Simulating liquids on dynamically
    warping grids. <i>IEEE Transactions on Visualization and Computer Graphics</i>.
    2020;26(6):2288-2302. doi:<a href="https://doi.org/10.1109/TVCG.2018.2883628">10.1109/TVCG.2018.2883628</a>
  apa: Hikaru, I., Wojtan, C., Thuerey, N., Igarashi, T., &#38; Ando, R. (2020). Simulating
    liquids on dynamically warping grids. <i>IEEE Transactions on Visualization and
    Computer Graphics</i>. IEEE. <a href="https://doi.org/10.1109/TVCG.2018.2883628">https://doi.org/10.1109/TVCG.2018.2883628</a>
  chicago: Hikaru, Ibayashi, Chris Wojtan, Nils Thuerey, Takeo Igarashi, and Ryoichi
    Ando. “Simulating Liquids on Dynamically Warping Grids.” <i>IEEE Transactions
    on Visualization and Computer Graphics</i>. IEEE, 2020. <a href="https://doi.org/10.1109/TVCG.2018.2883628">https://doi.org/10.1109/TVCG.2018.2883628</a>.
  ieee: I. Hikaru, C. Wojtan, N. Thuerey, T. Igarashi, and R. Ando, “Simulating liquids
    on dynamically warping grids,” <i>IEEE Transactions on Visualization and Computer
    Graphics</i>, vol. 26, no. 6. IEEE, pp. 2288–2302, 2020.
  ista: Hikaru I, Wojtan C, Thuerey N, Igarashi T, Ando R. 2020. Simulating liquids
    on dynamically warping grids. IEEE Transactions on Visualization and Computer
    Graphics. 26(6), 2288–2302.
  mla: Hikaru, Ibayashi, et al. “Simulating Liquids on Dynamically Warping Grids.”
    <i>IEEE Transactions on Visualization and Computer Graphics</i>, vol. 26, no.
    6, IEEE, 2020, pp. 2288–302, doi:<a href="https://doi.org/10.1109/TVCG.2018.2883628">10.1109/TVCG.2018.2883628</a>.
  short: I. Hikaru, C. Wojtan, N. Thuerey, T. Igarashi, R. Ando, IEEE Transactions
    on Visualization and Computer Graphics 26 (2020) 2288–2302.
date_created: 2018-12-16T22:59:21Z
date_published: 2020-06-01T00:00:00Z
date_updated: 2025-07-10T11:52:55Z
day: '01'
ddc:
- '006'
department:
- _id: ChWo
doi: 10.1109/TVCG.2018.2883628
external_id:
  isi:
  - '000532295600014'
  pmid:
  - '30507534'
file:
- access_level: open_access
  checksum: 8d4c55443a0ee335bb5bb652de503042
  content_type: application/pdf
  creator: wojtan
  date_created: 2020-10-08T08:34:53Z
  date_updated: 2020-10-08T08:34:53Z
  file_id: '8626'
  file_name: preprint.pdf
  file_size: 21910098
  relation: main_file
  success: 1
file_date_updated: 2020-10-08T08:34:53Z
has_accepted_license: '1'
intvolume: '        26'
isi: 1
issue: '6'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Submitted Version
page: 2288-2302
pmid: 1
publication: IEEE Transactions on Visualization and Computer Graphics
publication_identifier:
  eissn:
  - 1941-0506
  issn:
  - 1077-2626
publication_status: published
publisher: IEEE
quality_controlled: '1'
scopus_import: '1'
status: public
title: Simulating liquids on dynamically warping grids
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 26
year: '2020'
...
---
_id: '6184'
abstract:
- lang: eng
  text: We prove edge universality for a general class of correlated real symmetric
    or complex Hermitian Wigner matrices with arbitrary expectation. Our theorem also
    applies to internal edges of the self-consistent density of states. In particular,
    we establish a strong form of band rigidity which excludes mismatches between
    location and label of eigenvalues close to internal edges in these general models.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Johannes
  full_name: Alt, Johannes
  id: 36D3D8B6-F248-11E8-B48F-1D18A9856A87
  last_name: Alt
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
  last_name: Erdös
  orcid: 0000-0001-5366-9603
- first_name: Torben H
  full_name: Krüger, Torben H
  id: 3020C786-F248-11E8-B48F-1D18A9856A87
  last_name: Krüger
  orcid: 0000-0002-4821-3297
- first_name: Dominik J
  full_name: Schröder, Dominik J
  id: 408ED176-F248-11E8-B48F-1D18A9856A87
  last_name: Schröder
  orcid: 0000-0002-2904-1856
citation:
  ama: 'Alt J, Erdös L, Krüger TH, Schröder DJ. Correlated random matrices: Band rigidity
    and edge universality. <i>Annals of Probability</i>. 2020;48(2):963-1001. doi:<a
    href="https://doi.org/10.1214/19-AOP1379">10.1214/19-AOP1379</a>'
  apa: 'Alt, J., Erdös, L., Krüger, T. H., &#38; Schröder, D. J. (2020). Correlated
    random matrices: Band rigidity and edge universality. <i>Annals of Probability</i>.
    Institute of Mathematical Statistics. <a href="https://doi.org/10.1214/19-AOP1379">https://doi.org/10.1214/19-AOP1379</a>'
  chicago: 'Alt, Johannes, László Erdös, Torben H Krüger, and Dominik J Schröder.
    “Correlated Random Matrices: Band Rigidity and Edge Universality.” <i>Annals of
    Probability</i>. Institute of Mathematical Statistics, 2020. <a href="https://doi.org/10.1214/19-AOP1379">https://doi.org/10.1214/19-AOP1379</a>.'
  ieee: 'J. Alt, L. Erdös, T. H. Krüger, and D. J. Schröder, “Correlated random matrices:
    Band rigidity and edge universality,” <i>Annals of Probability</i>, vol. 48, no.
    2. Institute of Mathematical Statistics, pp. 963–1001, 2020.'
  ista: 'Alt J, Erdös L, Krüger TH, Schröder DJ. 2020. Correlated random matrices:
    Band rigidity and edge universality. Annals of Probability. 48(2), 963–1001.'
  mla: 'Alt, Johannes, et al. “Correlated Random Matrices: Band Rigidity and Edge
    Universality.” <i>Annals of Probability</i>, vol. 48, no. 2, Institute of Mathematical
    Statistics, 2020, pp. 963–1001, doi:<a href="https://doi.org/10.1214/19-AOP1379">10.1214/19-AOP1379</a>.'
  short: J. Alt, L. Erdös, T.H. Krüger, D.J. Schröder, Annals of Probability 48 (2020)
    963–1001.
date_created: 2019-03-28T09:20:08Z
date_published: 2020-03-01T00:00:00Z
date_updated: 2026-04-08T14:11:36Z
day: '01'
department:
- _id: LaEr
doi: 10.1214/19-AOP1379
ec_funded: 1
external_id:
  arxiv:
  - '1804.07744'
  isi:
  - '000528269100013'
intvolume: '        48'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1804.07744
month: '03'
oa: 1
oa_version: Preprint
page: 963-1001
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '338804'
  name: Random matrices, universality and disordered quantum systems
publication: Annals of Probability
publication_identifier:
  issn:
  - 0091-1798
publication_status: published
publisher: Institute of Mathematical Statistics
quality_controlled: '1'
related_material:
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  - id: '149'
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scopus_import: '1'
status: public
title: 'Correlated random matrices: Band rigidity and edge universality'
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 48
year: '2020'
...
