---
OA_place: publisher
OA_type: free access
_id: '9168'
abstract:
- lang: eng
text: Interspecific crossing experiments have shown that sex chromosomes play a
major role in reproductive isolation between many pairs of species. However, their
ability to act as reproductive barriers, which hamper interspecific genetic exchange,
has rarely been evaluated quantitatively compared to Autosomes. This genome-wide
limitation of gene flow is essential for understanding the complete separation
of species, and thus speciation. Here, we develop a mainland-island model of secondary
contact between hybridizing species of an XY (or ZW) sexual system. We obtain
theoretical predictions for the frequency of introgressed alleles, and the strength
of the barrier to neutral gene flow for the two types of chromosomes carrying
multiple interspecific barrier loci. Theoretical predictions are obtained for
scenarios where introgressed alleles are rare. We show that the same analytical
expressions apply for sex chromosomes and autosomes, but with different sex-averaged
effective parameters. The specific features of sex chromosomes (hemizygosity and
absence of recombination in the heterogametic sex) lead to reduced levels of introgression
on the X (or Z) compared to autosomes. This effect can be enhanced by certain
types of sex-biased forces, but it remains overall small (except when alleles
causing incompatibilities are recessive). We discuss these predictions in the
light of empirical data comprising model-based tests of introgression and cline
surveys in various biological systems.
acknowledged_ssus:
- _id: ScienComp
acknowledgement: "The computations were performed with the IST Austria High-Performance
Computing (HPC) Cluster and the Institut Français de Bioinformatique (IFB) Core
Cluster. We are grateful to Nick Barton and Beatriz Vicoso for critical comments
on the model and the manuscript. We also thank Brian Charlesworth, Stuart Baird,
and an anonymous reviewer for insightful comments.\r\nC.F. was supported by an Austrian
Science Foundation FWF grant (Project M 2463-B29)."
article_number: iyaa025
article_processing_charge: No
article_type: original
author:
- first_name: Christelle
full_name: Fraisse, Christelle
id: 32DF5794-F248-11E8-B48F-1D18A9856A87
last_name: Fraisse
orcid: 0000-0001-8441-5075
- first_name: Himani
full_name: Sachdeva, Himani
id: 42377A0A-F248-11E8-B48F-1D18A9856A87
last_name: Sachdeva
citation:
ama: 'Fraisse C, Sachdeva H. The rates of introgression and barriers to genetic
exchange between hybridizing species: Sex chromosomes vs autosomes. Genetics.
2021;217(2). doi:10.1093/genetics/iyaa025'
apa: 'Fraisse, C., & Sachdeva, H. (2021). The rates of introgression and barriers
to genetic exchange between hybridizing species: Sex chromosomes vs autosomes.
Genetics. Genetics Society of America. https://doi.org/10.1093/genetics/iyaa025'
chicago: 'Fraisse, Christelle, and Himani Sachdeva. “The Rates of Introgression
and Barriers to Genetic Exchange between Hybridizing Species: Sex Chromosomes
vs Autosomes.” Genetics. Genetics Society of America, 2021. https://doi.org/10.1093/genetics/iyaa025.'
ieee: 'C. Fraisse and H. Sachdeva, “The rates of introgression and barriers to genetic
exchange between hybridizing species: Sex chromosomes vs autosomes,” Genetics,
vol. 217, no. 2. Genetics Society of America, 2021.'
ista: 'Fraisse C, Sachdeva H. 2021. The rates of introgression and barriers to genetic
exchange between hybridizing species: Sex chromosomes vs autosomes. Genetics.
217(2), iyaa025.'
mla: 'Fraisse, Christelle, and Himani Sachdeva. “The Rates of Introgression and
Barriers to Genetic Exchange between Hybridizing Species: Sex Chromosomes vs Autosomes.”
Genetics, vol. 217, no. 2, iyaa025, Genetics Society of America, 2021,
doi:10.1093/genetics/iyaa025.'
short: C. Fraisse, H. Sachdeva, Genetics 217 (2021).
corr_author: '1'
date_created: 2021-02-18T14:41:30Z
date_published: 2021-02-01T00:00:00Z
date_updated: 2026-07-28T12:39:03Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1093/genetics/iyaa025
external_id:
isi:
- '000637218100005'
pmid:
- '33724409'
intvolume: ' 217'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1093/genetics/iyaa025
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 2662AADE-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: M02463
name: Sex chromosomes and species barriers
publication: Genetics
publication_identifier:
issn:
- 1943-2631
publication_status: published
publisher: Genetics Society of America
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The rates of introgression and barriers to genetic exchange between hybridizing
species: Sex chromosomes vs autosomes'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 217
year: '2021'
...
---
OA_place: publisher
OA_type: free access
_id: '9793'
abstract:
- lang: eng
text: Astrocytes extensively infiltrate the neuropil to regulate critical aspects
of synaptic development and function. This process is regulated by transcellular
interactions between astrocytes and neurons via cell adhesion molecules. How astrocytes
coordinate developmental processes among one another to parse out the synaptic
neuropil and form non-overlapping territories is unknown. Here we identify a molecular
mechanism regulating astrocyte-astrocyte interactions during development to coordinate
astrocyte morphogenesis and gap junction coupling. We show that hepaCAM, a disease-linked,
astrocyte-enriched cell adhesion molecule, regulates astrocyte competition for
territory and morphological complexity in the developing mouse cortex. Furthermore,
conditional deletion of Hepacam from developing astrocytes significantly impairs
gap junction coupling between astrocytes and disrupts the balance between synaptic
excitation and inhibition. Mutations in HEPACAM cause megalencephalic leukoencephalopathy
with subcortical cysts in humans. Therefore, our findings suggest that disruption
of astrocyte self-organization mechanisms could be an underlying cause of neural
pathology.
acknowledgement: This work was supported by the National Institutes of Health (R01
DA047258 and R01 NS102237 to C.E., F32 NS100392 to K.T.B.) and the Holland-Trice
Brain Research Award (to C.E.). K.T.B. was supported by postdoctoral fellowships
from the Foerster-Bernstein Family and The Hartwell Foundation. The Hippenmeyer
lab was supported by the European Research Council (ERC) under the European Union’s
Horizon 2020 research and innovations program (725780 LinPro) to S.H. R.E. was supported
by Ministerio de Ciencia y Tecnología (RTI2018-093493-B-I00). We thank the Duke
Light Microscopy Core Facility, the Duke Transgenic Mouse Facility, Dr. U. Schulte
for assistance with proteomic experiments, and Dr. D. Silver for critical review
of the manuscript. Cartoon elements of figure panels were created using BioRender.com.
article_processing_charge: No
article_type: original
author:
- first_name: Katherine T.
full_name: Baldwin, Katherine T.
last_name: Baldwin
- first_name: Christabel X.
full_name: Tan, Christabel X.
last_name: Tan
- first_name: Samuel T.
full_name: Strader, Samuel T.
last_name: Strader
- first_name: Changyu
full_name: Jiang, Changyu
last_name: Jiang
- first_name: Justin T.
full_name: Savage, Justin T.
last_name: Savage
- first_name: Xabier
full_name: Elorza-Vidal, Xabier
last_name: Elorza-Vidal
- first_name: Ximena
full_name: Contreras, Ximena
id: 475990FE-F248-11E8-B48F-1D18A9856A87
last_name: Contreras
- first_name: Thomas
full_name: Rülicke, Thomas
last_name: Rülicke
- first_name: Simon
full_name: Hippenmeyer, Simon
id: 37B36620-F248-11E8-B48F-1D18A9856A87
last_name: Hippenmeyer
orcid: 0000-0003-2279-1061
- first_name: Raúl
full_name: Estévez, Raúl
last_name: Estévez
- first_name: Ru-Rong
full_name: Ji, Ru-Rong
last_name: Ji
- first_name: Cagla
full_name: Eroglu, Cagla
last_name: Eroglu
citation:
ama: Baldwin KT, Tan CX, Strader ST, et al. HepaCAM controls astrocyte self-organization
and coupling. Neuron. 2021;109(15):2427-2442.e10. doi:10.1016/j.neuron.2021.05.025
apa: Baldwin, K. T., Tan, C. X., Strader, S. T., Jiang, C., Savage, J. T., Elorza-Vidal,
X., … Eroglu, C. (2021). HepaCAM controls astrocyte self-organization and coupling.
Neuron. Elsevier. https://doi.org/10.1016/j.neuron.2021.05.025
chicago: Baldwin, Katherine T., Christabel X. Tan, Samuel T. Strader, Changyu Jiang,
Justin T. Savage, Xabier Elorza-Vidal, Ximena Contreras, et al. “HepaCAM Controls
Astrocyte Self-Organization and Coupling.” Neuron. Elsevier, 2021. https://doi.org/10.1016/j.neuron.2021.05.025.
ieee: K. T. Baldwin et al., “HepaCAM controls astrocyte self-organization
and coupling,” Neuron, vol. 109, no. 15. Elsevier, p. 2427–2442.e10, 2021.
ista: Baldwin KT, Tan CX, Strader ST, Jiang C, Savage JT, Elorza-Vidal X, Contreras
X, Rülicke T, Hippenmeyer S, Estévez R, Ji R-R, Eroglu C. 2021. HepaCAM controls
astrocyte self-organization and coupling. Neuron. 109(15), 2427–2442.e10.
mla: Baldwin, Katherine T., et al. “HepaCAM Controls Astrocyte Self-Organization
and Coupling.” Neuron, vol. 109, no. 15, Elsevier, 2021, p. 2427–2442.e10,
doi:10.1016/j.neuron.2021.05.025.
short: K.T. Baldwin, C.X. Tan, S.T. Strader, C. Jiang, J.T. Savage, X. Elorza-Vidal,
X. Contreras, T. Rülicke, S. Hippenmeyer, R. Estévez, R.-R. Ji, C. Eroglu, Neuron
109 (2021) 2427–2442.e10.
date_created: 2021-08-06T09:08:25Z
date_published: 2021-08-04T00:00:00Z
date_updated: 2026-07-28T12:30:05Z
day: '04'
ddc:
- '570'
department:
- _id: SiHi
doi: 10.1016/j.neuron.2021.05.025
ec_funded: 1
external_id:
isi:
- '000692851900010'
pmid:
- '34171291'
intvolume: ' 109'
isi: 1
issue: '15'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.neuron.2021.05.025
month: '08'
oa: 1
oa_version: Published Version
page: 2427-2442.e10
pmid: 1
project:
- _id: 260018B0-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '725780'
name: Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development
publication: Neuron
publication_identifier:
eissn:
- 1097-4199
issn:
- 0896-6273
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: HepaCAM controls astrocyte self-organization and coupling
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 109
year: '2021'
...
---
OA_place: publisher
OA_type: free access
_id: '10363'
abstract:
- lang: eng
text: Erythropoietin enhances oxygen delivery and reduces hypoxia-induced cell death,
but its pro-thrombotic activity is problematic for use of erythropoietin in treating
hypoxia. We constructed a fusion protein that stimulates red blood cell production
and neuroprotection without triggering platelet production, a marker for thrombosis.
The protein consists of an anti-glycophorin A nanobody and an erythropoietin mutant
(L108A). The mutation reduces activation of erythropoietin receptor homodimers
that induce erythropoiesis and thrombosis, but maintains the tissue-protective
signaling. The binding of the nanobody element to glycophorin A rescues homodimeric
erythropoietin receptor activation on red blood cell precursors. In a cell proliferation
assay, the fusion protein is active at 10−14 M, allowing an estimate of the number
of receptor–ligand complexes needed for signaling. This fusion protein stimulates
erythroid cell proliferation in vitro and in mice, and shows neuroprotective activity
in vitro. Our erythropoietin fusion protein presents a novel molecule for treating
hypoxia.
acknowledgement: This work was supported by funds from the Wyss Institute for Biologically
Inspired Engineering and the Boston Biomedical Innovation Center (Pilot Award 112475;
Drive Award U54HL119145). J.L., K.M.K., D.R.B., J.C.W. and P.A.S. were supported
by the Harvard Medical School Department of Systems Biology. J.C.W. was further
supported by the Harvard Medical School Laboratory of Systems Pharmacology. A.V.,
D.R.B. and P.A.S. were further supported by the Wyss Institute for Biologically
Inspired Engineering. N.G.G. was sponsored by the Army Research Office under Grant
Number W911NF-17-2-0092. The views and conclusions contained in this document are
those of the authors and should not be interpreted as representing the official
policies, either expressed or implied, of the Army Research Office or the U.S. Government.
The U.S. Government is authorized to reproduce and distribute reprints for Government
purposes notwithstanding any copyright notation herein. We sincerely thank Amanda
Graveline and the Wyss Institute at Harvard for their scientific support.
article_number: gzab025
article_processing_charge: No
article_type: original
author:
- first_name: Jungmin
full_name: Lee, Jungmin
last_name: Lee
- first_name: Andyna
full_name: Vernet, Andyna
last_name: Vernet
- first_name: Nathalie
full_name: Gruber, Nathalie
id: 2C9C8316-AA17-11E9-B5C2-8BC2E5697425
last_name: Gruber
- first_name: Kasia M.
full_name: Kready, Kasia M.
last_name: Kready
- first_name: Devin R.
full_name: Burrill, Devin R.
last_name: Burrill
- first_name: Jeffrey C.
full_name: Way, Jeffrey C.
last_name: Way
- first_name: Pamela A.
full_name: Silver, Pamela A.
last_name: Silver
citation:
ama: Lee J, Vernet A, Gruber N, et al. Rational engineering of an erythropoietin
fusion protein to treat hypoxia. Protein Engineering, Design and Selection.
2021;34. doi:10.1093/protein/gzab025
apa: Lee, J., Vernet, A., Gruber, N., Kready, K. M., Burrill, D. R., Way, J. C.,
& Silver, P. A. (2021). Rational engineering of an erythropoietin fusion protein
to treat hypoxia. Protein Engineering, Design and Selection. Oxford University
Press. https://doi.org/10.1093/protein/gzab025
chicago: Lee, Jungmin, Andyna Vernet, Nathalie Gruber, Kasia M. Kready, Devin R.
Burrill, Jeffrey C. Way, and Pamela A. Silver. “Rational Engineering of an Erythropoietin
Fusion Protein to Treat Hypoxia.” Protein Engineering, Design and Selection.
Oxford University Press, 2021. https://doi.org/10.1093/protein/gzab025.
ieee: J. Lee et al., “Rational engineering of an erythropoietin fusion protein
to treat hypoxia,” Protein Engineering, Design and Selection, vol. 34.
Oxford University Press, 2021.
ista: Lee J, Vernet A, Gruber N, Kready KM, Burrill DR, Way JC, Silver PA. 2021.
Rational engineering of an erythropoietin fusion protein to treat hypoxia. Protein
Engineering, Design and Selection. 34, gzab025.
mla: Lee, Jungmin, et al. “Rational Engineering of an Erythropoietin Fusion Protein
to Treat Hypoxia.” Protein Engineering, Design and Selection, vol. 34,
gzab025, Oxford University Press, 2021, doi:10.1093/protein/gzab025.
short: J. Lee, A. Vernet, N. Gruber, K.M. Kready, D.R. Burrill, J.C. Way, P.A. Silver,
Protein Engineering, Design and Selection 34 (2021).
date_created: 2021-11-28T23:01:28Z
date_published: 2021-11-01T00:00:00Z
date_updated: 2026-07-28T12:27:59Z
day: '01'
ddc:
- '570'
department:
- _id: CaGu
doi: 10.1093/protein/gzab025
external_id:
isi:
- '000746596900001'
pmid:
- '34725710'
intvolume: ' 34'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1093/protein/gzab025
month: '11'
oa: 1
oa_version: Published Version
pmid: 1
publication: Protein Engineering, Design and Selection
publication_identifier:
eissn:
- 1741-0134
issn:
- 1741-0126
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Rational engineering of an erythropoietin fusion protein to treat hypoxia
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 34
year: '2021'
...
---
OA_type: closed access
_id: '10809'
abstract:
- lang: eng
text: Thermoelectric materials are engines that convert heat into an electrical
current. Intuitively, the efficiency of this process depends on how many electrons
(charge carriers) can move and how easily they do so, how much energy those moving
electrons transport, and how easily the temperature gradient is maintained. In
terms of material properties, an excellent thermoelectric material requires a
high electrical conductivity σ, a high Seebeck coefficient S (a measure of the
induced thermoelectric voltage as a function of temperature gradient), and a low
thermal conductivity κ. The challenge is that these three properties are strongly
interrelated in a conflicting manner (1). On page 722 of this issue, Roychowdhury
et al. (2) have found a way to partially break these ties in silver antimony telluride
(AgSbTe2) with the addition of cadmium (Cd) cations, which increase the ordering
in this inherently disordered thermoelectric material.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Yu
full_name: Liu, Yu
id: 2A70014E-F248-11E8-B48F-1D18A9856A87
last_name: Liu
orcid: 0000-0001-7313-6740
- first_name: Maria
full_name: Ibáñez, Maria
id: 43C61214-F248-11E8-B48F-1D18A9856A87
last_name: Ibáñez
orcid: 0000-0001-5013-2843
citation:
ama: Liu Y, Ibáñez M. Tidying up the mess. Science. 2021;371(6530):678-679.
doi:10.1126/science.abg0886
apa: Liu, Y., & Ibáñez, M. (2021). Tidying up the mess. Science. American
Association for the Advancement of Science. https://doi.org/10.1126/science.abg0886
chicago: Liu, Yu, and Maria Ibáñez. “Tidying up the Mess.” Science. American
Association for the Advancement of Science, 2021. https://doi.org/10.1126/science.abg0886.
ieee: Y. Liu and M. Ibáñez, “Tidying up the mess,” Science, vol. 371, no.
6530. American Association for the Advancement of Science, pp. 678–679, 2021.
ista: Liu Y, Ibáñez M. 2021. Tidying up the mess. Science. 371(6530), 678–679.
mla: Liu, Yu, and Maria Ibáñez. “Tidying up the Mess.” Science, vol. 371,
no. 6530, American Association for the Advancement of Science, 2021, pp. 678–79,
doi:10.1126/science.abg0886.
short: Y. Liu, M. Ibáñez, Science 371 (2021) 678–679.
corr_author: '1'
date_created: 2022-03-03T09:51:48Z
date_published: 2021-02-12T00:00:00Z
date_updated: 2026-07-28T12:16:17Z
day: '12'
department:
- _id: MaIb
doi: 10.1126/science.abg0886
external_id:
isi:
- '000617551600027'
pmid:
- '33574201'
intvolume: ' 371'
isi: 1
issue: '6530'
language:
- iso: eng
month: '02'
oa_version: None
page: 678-679
pmid: 1
publication: Science
publication_identifier:
eissn:
- 1095-9203
issn:
- 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Tidying up the mess
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 371
year: '2021'
...
---
_id: '8317'
abstract:
- lang: eng
text: When can a polyomino piece of paper be folded into a unit cube? Prior work
studied tree-like polyominoes, but polyominoes with holes remain an intriguing
open problem. We present sufficient conditions for a polyomino with one or several
holes to fold into a cube, and conditions under which cube folding is impossible.
In particular, we show that all but five special “basic” holes guarantee foldability.
acknowledgement: This research was performed in part at the 33rd Bellairs Winter Workshop
on Computational Geometry. We thank all other participants for a fruitful atmosphere.
H. Akitaya was supported by NSF CCF-1422311 & 1423615. Z. Masárová was partially
funded by Wittgenstein Prize, Austrian Science Fund (FWF), grant no. Z 342-N31.
article_number: '101700'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Oswin
full_name: Aichholzer, Oswin
last_name: Aichholzer
- first_name: Hugo A.
full_name: Akitaya, Hugo A.
last_name: Akitaya
- first_name: Kenneth C.
full_name: Cheung, Kenneth C.
last_name: Cheung
- first_name: Erik D.
full_name: Demaine, Erik D.
last_name: Demaine
- first_name: Martin L.
full_name: Demaine, Martin L.
last_name: Demaine
- first_name: Sándor P.
full_name: Fekete, Sándor P.
last_name: Fekete
- first_name: Linda
full_name: Kleist, Linda
last_name: Kleist
- first_name: Irina
full_name: Kostitsyna, Irina
last_name: Kostitsyna
- first_name: Maarten
full_name: Löffler, Maarten
last_name: Löffler
- first_name: Zuzana
full_name: Masárová, Zuzana
id: 45CFE238-F248-11E8-B48F-1D18A9856A87
last_name: Masárová
orcid: 0000-0002-6660-1322
- first_name: Klara
full_name: Mundilova, Klara
last_name: Mundilova
- first_name: Christiane
full_name: Schmidt, Christiane
last_name: Schmidt
citation:
ama: 'Aichholzer O, Akitaya HA, Cheung KC, et al. Folding polyominoes with holes
into a cube. Computational Geometry: Theory and Applications. 2021;93.
doi:10.1016/j.comgeo.2020.101700'
apa: 'Aichholzer, O., Akitaya, H. A., Cheung, K. C., Demaine, E. D., Demaine, M.
L., Fekete, S. P., … Schmidt, C. (2021). Folding polyominoes with holes into a
cube. Computational Geometry: Theory and Applications. Elsevier. https://doi.org/10.1016/j.comgeo.2020.101700'
chicago: 'Aichholzer, Oswin, Hugo A. Akitaya, Kenneth C. Cheung, Erik D. Demaine,
Martin L. Demaine, Sándor P. Fekete, Linda Kleist, et al. “Folding Polyominoes
with Holes into a Cube.” Computational Geometry: Theory and Applications.
Elsevier, 2021. https://doi.org/10.1016/j.comgeo.2020.101700.'
ieee: 'O. Aichholzer et al., “Folding polyominoes with holes into a cube,”
Computational Geometry: Theory and Applications, vol. 93. Elsevier, 2021.'
ista: 'Aichholzer O, Akitaya HA, Cheung KC, Demaine ED, Demaine ML, Fekete SP, Kleist
L, Kostitsyna I, Löffler M, Masárová Z, Mundilova K, Schmidt C. 2021. Folding
polyominoes with holes into a cube. Computational Geometry: Theory and Applications.
93, 101700.'
mla: 'Aichholzer, Oswin, et al. “Folding Polyominoes with Holes into a Cube.” Computational
Geometry: Theory and Applications, vol. 93, 101700, Elsevier, 2021, doi:10.1016/j.comgeo.2020.101700.'
short: 'O. Aichholzer, H.A. Akitaya, K.C. Cheung, E.D. Demaine, M.L. Demaine, S.P.
Fekete, L. Kleist, I. Kostitsyna, M. Löffler, Z. Masárová, K. Mundilova, C. Schmidt,
Computational Geometry: Theory and Applications 93 (2021).'
corr_author: '1'
date_created: 2020-08-30T22:01:09Z
date_published: 2021-02-01T00:00:00Z
date_updated: 2026-07-28T13:08:48Z
day: '01'
department:
- _id: HeEd
doi: 10.1016/j.comgeo.2020.101700
external_id:
arxiv:
- '1910.09917'
isi:
- '000579185100004'
intvolume: ' 93'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1910.09917v3
month: '02'
oa: 1
oa_version: Preprint
project:
- _id: 268116B8-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: Z00342
name: Mathematics, Computer Science
publication: 'Computational Geometry: Theory and Applications'
publication_identifier:
eissn:
- 1879-081X
issn:
- 0925-7721
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
record:
- id: '6989'
relation: shorter_version
status: public
scopus_import: '1'
status: public
title: Folding polyominoes with holes into a cube
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 93
year: '2021'
...
---
OA_place: repository
OA_type: green
_id: '10912'
abstract:
- lang: eng
text: Brain dynamics display collective phenomena as diverse as neuronal oscillations
and avalanches. Oscillations are rhythmic, with fluctuations occurring at a characteristic
scale, whereas avalanches are scale-free cascades of neural activity. Here we
show that such antithetic features can coexist in a very generic class of adaptive
neural networks. In the most simple yet fully microscopic model from this class
we make direct contact with human brain resting-state activity recordings via
tractable inference of the model's two essential parameters. The inferred model
quantitatively captures the dynamics over a broad range of scales, from single
sensor fluctuations, collective behaviors of nearly-synchronous extreme events
on multiple sensors, to neuronal avalanches unfolding over multiple sensors across
multiple time-bins. Importantly, the inferred parameters correlate with model-independent
signatures of "closeness to criticality", suggesting that the coexistence of scale-specific
(neural oscillations) and scale-free (neuronal avalanches) dynamics in brain activity
occurs close to a non-equilibrium critical point at the onset of self-sustained
oscillations.
acknowledgement: "FL acknowledges support from the European Union’s Horizon 2020 research
and innovation program under the Marie Sklodowska-Curie Grant Agreement No. 754411.
GT\r\nacknowledges the support of the Austrian Science Fund (FWF) under Stand-Alone
Grant\r\nNo. P34015."
article_number: '2108.06686'
article_processing_charge: No
arxiv: 1
author:
- first_name: Fabrizio
full_name: Lombardi, Fabrizio
id: A057D288-3E88-11E9-986D-0CF4E5697425
last_name: Lombardi
orcid: 0000-0003-2623-5249
- first_name: Selver
full_name: Pepic, Selver
id: F93245C4-C3CA-11E9-B4F0-C6F4E5697425
last_name: Pepic
- first_name: Oren
full_name: Shriki, Oren
last_name: Shriki
- first_name: Gašper
full_name: Tkačik, Gašper
id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
last_name: Tkačik
orcid: 0000-0002-6699-1455
- first_name: Daniele
full_name: De Martino, Daniele
last_name: De Martino
citation:
ama: Lombardi F, Pepic S, Shriki O, Tkačik G, De Martino D. Quantifying the coexistence
of neuronal oscillations and avalanches. doi:10.48550/ARXIV.2108.06686
apa: Lombardi, F., Pepic, S., Shriki, O., Tkačik, G., & De Martino, D. (n.d.).
Quantifying the coexistence of neuronal oscillations and avalanches. arXiv. https://doi.org/10.48550/ARXIV.2108.06686
chicago: Lombardi, Fabrizio, Selver Pepic, Oren Shriki, Gašper Tkačik, and Daniele
De Martino. “Quantifying the Coexistence of Neuronal Oscillations and Avalanches.”
arXiv, n.d. https://doi.org/10.48550/ARXIV.2108.06686.
ieee: F. Lombardi, S. Pepic, O. Shriki, G. Tkačik, and D. De Martino, “Quantifying
the coexistence of neuronal oscillations and avalanches.” arXiv.
ista: Lombardi F, Pepic S, Shriki O, Tkačik G, De Martino D. Quantifying the coexistence
of neuronal oscillations and avalanches. 2108.06686.
mla: Lombardi, Fabrizio, et al. Quantifying the Coexistence of Neuronal Oscillations
and Avalanches. 2108.06686, arXiv, doi:10.48550/ARXIV.2108.06686.
short: F. Lombardi, S. Pepic, O. Shriki, G. Tkačik, D. De Martino, (n.d.).
date_created: 2022-03-21T11:41:28Z
date_published: 2021-08-17T00:00:00Z
date_updated: 2026-07-29T06:53:41Z
day: '17'
ddc:
- '570'
department:
- _id: GaTk
doi: 10.48550/ARXIV.2108.06686
ec_funded: 1
external_id:
arxiv:
- '2108.06686'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/2108.06686
month: '08'
oa: 1
oa_version: Preprint
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
- _id: 626c45b5-2b32-11ec-9570-e509828c1ba6
grant_number: P34015
name: Efficient coding with biophysical realism
publication_status: submitted
publisher: arXiv
related_material:
record:
- id: '12762'
relation: later_version
status: public
status: public
title: Quantifying the coexistence of neuronal oscillations and avalanches
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '10080'
abstract:
- lang: eng
text: Hippocampal and neocortical neural activity is modulated by the position of
the individual in space. While hippocampal neurons provide the basis for a spatial
map, prefrontal cortical neurons generalize over environmental features. Whether
these generalized representations result from a bidirectional interaction with,
or are mainly derived from hippocampal spatial representations is not known. By
examining simultaneously recorded hippocampal and medial prefrontal neurons, we
observed that prefrontal spatial representations show a delayed coherence with
hippocampal ones. We also identified subpopulations of cells in the hippocampus
and medial prefrontal cortex that formed functional cross-area couplings; these
resembled the optimal connections predicted by a probabilistic model of spatial
information transfer and generalization. Moreover, cross-area couplings were strongest
and had the shortest delay preceding spatial decision-making. Our results suggest
that generalized spatial coding in the medial prefrontal cortex is inherited from
spatial representations in the hippocampus, and that the routing of information
can change dynamically with behavioral demands.
acknowledgement: We thank Federico Stella for invaluable suggestions and discussions.
We thank Yosman BapatDhar and Andrea Cumpelik for comments, help and suggestions
on the exposure of the text. We thank Predrag Živadinović and Juliana Couras for
comments on the text and the figures. This work was supported by the EU-FP7 MC-ITN
IN-SENS (grant 607616).
article_processing_charge: No
author:
- first_name: Michele
full_name: Nardin, Michele
id: 30BD0376-F248-11E8-B48F-1D18A9856A87
last_name: Nardin
orcid: 0000-0001-8849-6570
- first_name: Karola
full_name: Käfer, Karola
id: 2DAA49AA-F248-11E8-B48F-1D18A9856A87
last_name: Käfer
- first_name: Jozsef L
full_name: Csicsvari, Jozsef L
id: 3FA14672-F248-11E8-B48F-1D18A9856A87
last_name: Csicsvari
orcid: 0000-0002-5193-4036
biorxivid: 1
citation:
ama: Nardin M, Käfer K, Csicsvari JL. The generalized spatial representation in
the prefrontal cortex is inherited from the hippocampus. bioRxiv. doi:10.1101/2021.09.30.462269
apa: Nardin, M., Käfer, K., & Csicsvari, J. L. (n.d.). The generalized spatial
representation in the prefrontal cortex is inherited from the hippocampus. bioRxiv.
https://doi.org/10.1101/2021.09.30.462269
chicago: Nardin, Michele, Karola Käfer, and Jozsef L Csicsvari. “The Generalized
Spatial Representation in the Prefrontal Cortex Is Inherited from the Hippocampus.”
BioRxiv, n.d. https://doi.org/10.1101/2021.09.30.462269.
ieee: M. Nardin, K. Käfer, and J. L. Csicsvari, “The generalized spatial representation
in the prefrontal cortex is inherited from the hippocampus,” bioRxiv. .
ista: Nardin M, Käfer K, Csicsvari JL. The generalized spatial representation in
the prefrontal cortex is inherited from the hippocampus. bioRxiv, 10.1101/2021.09.30.462269.
mla: Nardin, Michele, et al. “The Generalized Spatial Representation in the Prefrontal
Cortex Is Inherited from the Hippocampus.” BioRxiv, doi:10.1101/2021.09.30.462269.
short: M. Nardin, K. Käfer, J.L. Csicsvari, BioRxiv (n.d.).
das_tickbox: '1'
date_created: 2021-10-04T06:28:32Z
date_published: 2021-10-02T00:00:00Z
date_updated: 2026-07-29T06:33:53Z
day: '02'
department:
- _id: GradSch
- _id: JoCs
doi: 10.1101/2021.09.30.462269
ec_funded: 1
external_id:
biorxivid:
- 10.1101/2021.09.30.462269
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1101/2021.09.30.462269
month: '10'
oa: 1
oa_version: Preprint
project:
- _id: 257BBB4C-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '607616'
name: inter-and intracellular signalling in schizophrenia
publication: bioRxiv
publication_status: submitted
status: public
title: The generalized spatial representation in the prefrontal cortex is inherited
from the hippocampus
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '9905'
abstract:
- lang: eng
text: Vaccines are thought to be the best available solution for controlling the
ongoing SARS-CoV-2 pandemic. However, the emergence of vaccine-resistant strains
may come too rapidly for current vaccine developments to alleviate the health,
economic and social consequences of the pandemic. To quantify and characterize
the risk of such a scenario, we created a SIR-derived model with initial stochastic
dynamics of the vaccine-resistant strain to study the probability of its emergence
and establishment. Using parameters realistically resembling SARS-CoV-2 transmission,
we model a wave-like pattern of the pandemic and consider the impact of the rate
of vaccination and the strength of non-pharmaceutical intervention measures on
the probability of emergence of a resistant strain. As expected, we found that
a fast rate of vaccination decreases the probability of emergence of a resistant
strain. Counterintuitively, when a relaxation of non-pharmaceutical interventions
happened at a time when most individuals of the population have already been vaccinated
the probability of emergence of a resistant strain was greatly increased. Consequently,
we show that a period of transmission reduction close to the end of the vaccination
campaign can substantially reduce the probability of resistant strain establishment.
Our results suggest that policymakers and individuals should consider maintaining
non-pharmaceutical interventions and transmission-reducing behaviours throughout
the entire vaccination period.
acknowledgement: We thank Alexey Kondrashov, Nick Machnik, Raimundo Julian Saona Urmeneta,
Gasper Tkacik and Nick Barton for fruitful discussions. We also thank participants
of EvoLunch seminar at IST Austria and the internal seminar at the Banco de España
for useful comments. The opinions expressed in this document are exclusively of
the authors and, therefore, do not necessarily coincide with those of the Banco
de España or the Eurosystem. ETD is supported by the Swiss National Science and
Louis Jeantet Foundation. The work of FAK was in part supported by the ERC Consolidator
Grant (771209-CharFL).
article_number: '15729'
article_processing_charge: Yes
article_type: original
author:
- first_name: Simon
full_name: Rella, Simon
id: B4765ACA-AA38-11E9-AC9A-0930E6697425
last_name: Rella
- first_name: Yuliya A.
full_name: Kulikova, Yuliya A.
last_name: Kulikova
- first_name: Emmanouil T.
full_name: Dermitzakis, Emmanouil T.
last_name: Dermitzakis
- first_name: Fyodor
full_name: Kondrashov, Fyodor
id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
last_name: Kondrashov
orcid: 0000-0001-8243-4694
citation:
ama: Rella S, Kulikova YA, Dermitzakis ET, Kondrashov F. Rates of SARS-CoV-2 transmission
and vaccination impact the fate of vaccine-resistant strains. Scientific Reports.
2021;11(1). doi:10.1038/s41598-021-95025-3
apa: Rella, S., Kulikova, Y. A., Dermitzakis, E. T., & Kondrashov, F. (2021).
Rates of SARS-CoV-2 transmission and vaccination impact the fate of vaccine-resistant
strains. Scientific Reports. Springer Nature. https://doi.org/10.1038/s41598-021-95025-3
chicago: Rella, Simon, Yuliya A. Kulikova, Emmanouil T. Dermitzakis, and Fyodor
Kondrashov. “Rates of SARS-CoV-2 Transmission and Vaccination Impact the Fate
of Vaccine-Resistant Strains.” Scientific Reports. Springer Nature, 2021.
https://doi.org/10.1038/s41598-021-95025-3.
ieee: S. Rella, Y. A. Kulikova, E. T. Dermitzakis, and F. Kondrashov, “Rates of
SARS-CoV-2 transmission and vaccination impact the fate of vaccine-resistant strains,”
Scientific Reports, vol. 11, no. 1. Springer Nature, 2021.
ista: Rella S, Kulikova YA, Dermitzakis ET, Kondrashov F. 2021. Rates of SARS-CoV-2
transmission and vaccination impact the fate of vaccine-resistant strains. Scientific
Reports. 11(1), 15729.
mla: Rella, Simon, et al. “Rates of SARS-CoV-2 Transmission and Vaccination Impact
the Fate of Vaccine-Resistant Strains.” Scientific Reports, vol. 11, no.
1, 15729, Springer Nature, 2021, doi:10.1038/s41598-021-95025-3.
short: S. Rella, Y.A. Kulikova, E.T. Dermitzakis, F. Kondrashov, Scientific Reports
11 (2021).
date_created: 2021-08-15T22:01:26Z
date_published: 2021-07-30T00:00:00Z
date_updated: 2026-07-29T12:57:49Z
day: '30'
ddc:
- '570'
- '610'
department:
- _id: FyKo
doi: 10.1038/s41598-021-95025-3
ec_funded: 1
external_id:
isi:
- '000683329100001'
pmid:
- '34330988'
file:
- access_level: open_access
checksum: ac86892ed17e6724c7251844da5cef5c
content_type: application/pdf
creator: asandaue
date_created: 2021-08-16T11:36:49Z
date_updated: 2021-08-16T11:36:49Z
file_id: '9927'
file_name: 2021_ScientificReports_Rella.pdf
file_size: 3432001
relation: main_file
success: 1
file_date_updated: 2021-08-16T11:36:49Z
has_accepted_license: '1'
intvolume: ' 11'
isi: 1
issue: '1'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 26580278-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '771209'
name: Characterizing the fitness landscape on population and global scales
publication: Scientific Reports
publication_identifier:
eissn:
- 2045-2322
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
link:
- description: News on IST Website
relation: press_release
url: https://ist.ac.at/en/news/counterintuitive-dynamics-threaten-the-end-of-the-pandemic/
record:
- id: '20811'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: Rates of SARS-CoV-2 transmission and vaccination impact the fate of vaccine-resistant
strains
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 11
year: '2021'
...
---
OA_place: publisher
_id: '9418'
abstract:
- lang: eng
text: "Deep learning is best known for its empirical success across a wide range
of applications\r\nspanning computer vision, natural language processing and speech.
Of equal significance,\r\nthough perhaps less known, are its ramifications for
learning theory: deep networks have\r\nbeen observed to perform surprisingly well
in the high-capacity regime, aka the overfitting\r\nor underspecified regime.
Classically, this regime on the far right of the bias-variance curve\r\nis associated
with poor generalisation; however, recent experiments with deep networks\r\nchallenge
this view.\r\n\r\nThis thesis is devoted to investigating various aspects of underspecification
in deep learning.\r\nFirst, we argue that deep learning models are underspecified
on two levels: a) any given\r\ntraining dataset can be fit by many different functions,
and b) any given function can be\r\nexpressed by many different parameter configurations.
We refer to the second kind of\r\nunderspecification as parameterisation redundancy
and we precisely characterise its extent.\r\nSecond, we characterise the implicit
criteria (the inductive bias) that guide learning in the\r\nunderspecified regime.
Specifically, we consider a nonlinear but tractable classification\r\nsetting,
and show that given the choice, neural networks learn classifiers with a large
margin.\r\nThird, we consider learning scenarios where the inductive bias is not
by itself sufficient to\r\ndeal with underspecification. We then study different
ways of ‘tightening the specification’: i)\r\nIn the setting of representation
learning with variational autoencoders, we propose a hand-\r\ncrafted regulariser
based on mutual information. ii) In the setting of binary classification, we\r\nconsider
soft-label (real-valued) supervision. We derive a generalisation bound for linear\r\nnetworks
supervised in this way and verify that soft labels facilitate fast learning. Finally,
we\r\nexplore an application of soft-label supervision to the training of multi-exit
models."
acknowledged_ssus:
- _id: ScienComp
- _id: CampIT
- _id: E-Lib
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Phuong
full_name: Bui Thi Mai, Phuong
id: 3EC6EE64-F248-11E8-B48F-1D18A9856A87
last_name: Bui Thi Mai
citation:
ama: Phuong M. Underspecification in deep learning. 2021. doi:10.15479/AT:ISTA:9418
apa: Phuong, M. (2021). Underspecification in deep learning. Institute of
Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:9418
chicago: Phuong, Mary. “Underspecification in Deep Learning.” Institute of Science
and Technology Austria, 2021. https://doi.org/10.15479/AT:ISTA:9418.
ieee: M. Phuong, “Underspecification in deep learning,” Institute of Science and
Technology Austria, 2021.
ista: Phuong M. 2021. Underspecification in deep learning. Institute of Science
and Technology Austria.
mla: Phuong, Mary. Underspecification in Deep Learning. Institute of Science
and Technology Austria, 2021, doi:10.15479/AT:ISTA:9418.
short: M. Phuong, Underspecification in Deep Learning, Institute of Science and
Technology Austria, 2021.
corr_author: '1'
date_created: 2021-05-24T13:06:23Z
date_published: 2021-05-30T00:00:00Z
date_updated: 2026-07-30T05:33:52Z
day: '30'
ddc:
- '000'
degree_awarded: PhD
department:
- _id: GradSch
- _id: ChLa
doi: 10.15479/AT:ISTA:9418
doi_confirm: '1'
file:
- access_level: open_access
checksum: 4f0abe64114cfed264f9d36e8d1197e3
content_type: application/pdf
creator: bphuong
date_created: 2021-05-24T11:22:29Z
date_updated: 2021-05-24T11:22:29Z
file_id: '9419'
file_name: mph-thesis-v519-pdfimages.pdf
file_size: 2673905
relation: main_file
success: 1
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checksum: f5699e876bc770a9b0df8345a77720a2
content_type: application/zip
creator: bphuong
date_created: 2021-05-24T11:56:02Z
date_updated: 2021-05-24T11:56:02Z
file_id: '9420'
file_name: thesis.zip
file_size: 92995100
relation: source_file
file_date_updated: 2021-05-24T11:56:02Z
has_accepted_license: '1'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: '125'
publication_identifier:
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '7435'
relation: part_of_dissertation
status: deleted
- id: '7481'
relation: part_of_dissertation
status: public
- id: '9416'
relation: part_of_dissertation
status: public
- id: '7479'
relation: part_of_dissertation
status: public
status: public
supervisor:
- first_name: Christoph
full_name: Lampert, Christoph
id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
last_name: Lampert
orcid: 0000-0001-8622-7887
title: Underspecification in deep learning
type: dissertation
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2021'
...
---
_id: '9416'
abstract:
- lang: eng
text: 'We study the inductive bias of two-layer ReLU networks trained by gradient
flow. We identify a class of easy-to-learn (`orthogonally separable'') datasets,
and characterise the solution that ReLU networks trained on such datasets converge
to. Irrespective of network width, the solution turns out to be a combination
of two max-margin classifiers: one corresponding to the positive data subset and
one corresponding to the negative data subset. The proof is based on the recently
introduced concept of extremal sectors, for which we prove a number of properties
in the context of orthogonal separability. In particular, we prove stationarity
of activation patterns from some time onwards, which enables a reduction of the
ReLU network to an ensemble of linear subnetworks.'
article_processing_charge: No
author:
- first_name: Phuong
full_name: Bui Thi Mai, Phuong
id: 3EC6EE64-F248-11E8-B48F-1D18A9856A87
last_name: Bui Thi Mai
- first_name: Christoph
full_name: Lampert, Christoph
id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
last_name: Lampert
orcid: 0000-0001-8622-7887
citation:
ama: 'Phuong M, Lampert C. The inductive bias of ReLU networks on orthogonally separable
data. In: 9th International Conference on Learning Representations. ; 2021.'
apa: Phuong, M., & Lampert, C. (2021). The inductive bias of ReLU networks on
orthogonally separable data. In 9th International Conference on Learning Representations.
Virtual.
chicago: Phuong, Mary, and Christoph Lampert. “The Inductive Bias of ReLU Networks
on Orthogonally Separable Data.” In 9th International Conference on Learning
Representations, 2021.
ieee: M. Phuong and C. Lampert, “The inductive bias of ReLU networks on orthogonally
separable data,” in 9th International Conference on Learning Representations,
Virtual, 2021.
ista: 'Phuong M, Lampert C. 2021. The inductive bias of ReLU networks on orthogonally
separable data. 9th International Conference on Learning Representations. ICLR:
International Conference on Learning Representations.'
mla: Phuong, Mary, and Christoph Lampert. “The Inductive Bias of ReLU Networks on
Orthogonally Separable Data.” 9th International Conference on Learning Representations,
2021.
short: M. Phuong, C. Lampert, in:, 9th International Conference on Learning Representations,
2021.
conference:
end_date: 2021-05-07
location: Virtual
name: 'ICLR: International Conference on Learning Representations'
start_date: 2021-05-03
corr_author: '1'
date_created: 2021-05-24T11:16:46Z
date_published: 2021-05-01T00:00:00Z
date_updated: 2026-07-30T05:33:51Z
day: '01'
ddc:
- '000'
department:
- _id: GradSch
- _id: ChLa
file:
- access_level: open_access
checksum: f34ff17017527db5ba6927f817bdd125
content_type: application/pdf
creator: bphuong
date_created: 2021-05-24T11:15:57Z
date_updated: 2021-05-24T11:15:57Z
file_id: '9417'
file_name: iclr2021_conference.pdf
file_size: 502356
relation: main_file
file_date_updated: 2021-05-24T11:15:57Z
has_accepted_license: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://openreview.net/pdf?id=krz7T0xU9Z_
month: '05'
oa: 1
oa_version: Published Version
publication: 9th International Conference on Learning Representations
publication_status: published
quality_controlled: '1'
related_material:
record:
- id: '9418'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: The inductive bias of ReLU networks on orthogonally separable data
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
OA_place: publisher
OA_type: hybrid
_id: '22472'
abstract:
- lang: eng
text: "Increasing urban tree cover is an often proposed mitigation strategy against
urban heat as trees are expected to cool cities through evapotranspiration and
shade provision. However, trees also modify wind flow and urban aerodynamic roughness,
which can potentially limit heat dissipation. Existing studies show a varying
cooling potential of urban trees in different climates and times of the day. These
differences are so far not systematically explained as partitioning the individual
tree effects is challenging and impossible through observations alone. Here, we
conduct numerical experiments removing and adding radiation, evapotranspiration,
and aerodynamic roughness effects caused by urban trees using a mechanistic urban
ecohydrological model. Simulations are presented for four cities in different
climates (Phoenix, Singapore, Melbourne, Zurich) considering the seasonal and
diurnal cycles of air and surface temperatures.\r\nResults show that evapotranspiration
of well-watered trees alone can decrease local 2 m air temperature at maximum
by 3.1– 5.8 °C in the four climates during summer. Further cooling is prevented
by stomatal closure at peak temperatures as high vapour pressure deficits limit
transpiration. While shading reduces surface temperatures, the interaction of
a non-transpiring tree with radiation can increase 2 m air temperature by up to
1.6 – 2.1 °C in certain hours of the day at local scale, thus partially counteracting
the evapotranspirative cooling effect. Furthermore, in the analysed scenarios,
which do not account for tree wind blockage effects, trees lead to a decrease
in urban roughness, which inhibits turbulent energy exchange and increases air
temperature during daytime. At night, single tree effects are variable likely
due to differences in atmospheric stability within the urban canyon. These results
explain reported diurnal, seasonal and climatic differences in the cooling effects
of urban trees, and can guide future field campaigns, planning strategies, and
species selection aimed at improving local microclimate using urban greenery."
article_number: '126970'
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Naika
full_name: Meili, Naika
last_name: Meili
- first_name: Gabriele
full_name: Manoli, Gabriele
last_name: Manoli
- first_name: Paolo
full_name: Burlando, Paolo
last_name: Burlando
- first_name: Jan
full_name: Carmeliet, Jan
last_name: Carmeliet
- first_name: Winston T.L.
full_name: Chow, Winston T.L.
last_name: Chow
- first_name: Andrew M.
full_name: Coutts, Andrew M.
last_name: Coutts
- first_name: Matthias
full_name: Roth, Matthias
last_name: Roth
- first_name: Erik
full_name: Velasco, Erik
last_name: Velasco
- first_name: Enrique R.
full_name: Vivoni, Enrique R.
last_name: Vivoni
- first_name: Simone
full_name: Fatichi, Simone
id: cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6
last_name: Fatichi
citation:
ama: 'Meili N, Manoli G, Burlando P, et al. Tree effects on urban microclimate:
Diurnal, seasonal, and climatic temperature differences explained by separating
radiation, evapotranspiration, and roughness effects. Urban Forestry &
Urban Greening. 2021;58(3). doi:10.1016/j.ufug.2020.126970'
apa: 'Meili, N., Manoli, G., Burlando, P., Carmeliet, J., Chow, W. T. L., Coutts,
A. M., … Fatichi, S. (2021). Tree effects on urban microclimate: Diurnal, seasonal,
and climatic temperature differences explained by separating radiation, evapotranspiration,
and roughness effects. Urban Forestry & Urban Greening. Elsevier. https://doi.org/10.1016/j.ufug.2020.126970'
chicago: 'Meili, Naika, Gabriele Manoli, Paolo Burlando, Jan Carmeliet, Winston
T.L. Chow, Andrew M. Coutts, Matthias Roth, Erik Velasco, Enrique R. Vivoni, and
Simone Fatichi. “Tree Effects on Urban Microclimate: Diurnal, Seasonal, and Climatic
Temperature Differences Explained by Separating Radiation, Evapotranspiration,
and Roughness Effects.” Urban Forestry & Urban Greening. Elsevier,
2021. https://doi.org/10.1016/j.ufug.2020.126970.'
ieee: 'N. Meili et al., “Tree effects on urban microclimate: Diurnal, seasonal,
and climatic temperature differences explained by separating radiation, evapotranspiration,
and roughness effects,” Urban Forestry & Urban Greening, vol. 58, no.
3. Elsevier, 2021.'
ista: 'Meili N, Manoli G, Burlando P, Carmeliet J, Chow WTL, Coutts AM, Roth M,
Velasco E, Vivoni ER, Fatichi S. 2021. Tree effects on urban microclimate: Diurnal,
seasonal, and climatic temperature differences explained by separating radiation,
evapotranspiration, and roughness effects. Urban Forestry & Urban Greening.
58(3), 126970.'
mla: 'Meili, Naika, et al. “Tree Effects on Urban Microclimate: Diurnal, Seasonal,
and Climatic Temperature Differences Explained by Separating Radiation, Evapotranspiration,
and Roughness Effects.” Urban Forestry & Urban Greening, vol. 58, no.
3, 126970, Elsevier, 2021, doi:10.1016/j.ufug.2020.126970.'
short: N. Meili, G. Manoli, P. Burlando, J. Carmeliet, W.T.L. Chow, A.M. Coutts,
M. Roth, E. Velasco, E.R. Vivoni, S. Fatichi, Urban Forestry & Urban Greening
58 (2021).
das_tickbox: '1'
date_created: 2026-07-27T12:30:23Z
date_published: 2021-03-01T00:00:00Z
date_updated: 2026-07-30T08:40:12Z
day: '01'
ddc:
- '550'
doi: 10.1016/j.ufug.2020.126970
extern: '1'
has_accepted_license: '1'
intvolume: ' 58'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.ufug.2020.126970
month: '03'
oa: 1
oa_version: Published Version
publication: Urban Forestry & Urban Greening
publication_identifier:
eissn:
- 1610-8167
issn:
- 1618-8667
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Tree effects on urban microclimate: Diurnal, seasonal, and climatic temperature
differences explained by separating radiation, evapotranspiration, and roughness
effects'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 58
year: '2021'
...
---
OA_place: publisher
OA_type: hybrid
_id: '22474'
abstract:
- lang: eng
text: In light of globally increasing temperatures, accentuated in cities by the
urban heat island effect, urban planners and designers are looking for new, quantitative
methods to assess the performance of their designs in terms of ecosystem services
provided by vegetation. Among these ecosystem services, improved microclimate
conditions are particularly important for human thermal comfort and health. In
this study, an urban scene in the tropical city of Singapore is numerically investigated
with a fully-integrated, three-dimensional urban microclimate model implemented
in OpenFOAM. Mass and heat transport in air and storage effect in the urban environment
are coupled so that the daily turbulent transport in air using steady Reynolds-averaged
Navier-Stokes (RANS) can be solved iteratively with the unsteady heat and moisture
transfer from urban surfaces. Vegetation is modeled as a porous medium for the
flow of moist air and a leaf energy balance model is used to determine the heat
fluxes and transpiration at leaf surfaces. The analysis shows the influence of
an urban park upon air temperatures and thermal comfort. Cooling intensity of
1 °C is observed downwind of the park within a region of 27 m for an incoming
wind speed of 2.3 m s−1, which reduces to 0.6 °C at a distance of 117 m from the
park. The Universal Thermal Comfort Index (UTCI) shows a reduction in thermal
stress in and around the park. The approach presented here can provide specific
guidelines for urban planners and frame expectations on magnitude and spatial
extent of local microclimate modifications generated by an urban park in a tropical
city.
article_number: '100939'
article_processing_charge: No
article_type: original
author:
- first_name: Muhammad Omer
full_name: Mughal, Muhammad Omer
last_name: Mughal
- first_name: Aytac
full_name: Kubilay, Aytac
last_name: Kubilay
- first_name: Simone
full_name: Fatichi, Simone
id: cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6
last_name: Fatichi
- first_name: Naika
full_name: Meili, Naika
last_name: Meili
- first_name: Jan
full_name: Carmeliet, Jan
last_name: Carmeliet
- first_name: Peter
full_name: Edwards, Peter
last_name: Edwards
- first_name: Paolo
full_name: Burlando, Paolo
last_name: Burlando
citation:
ama: Mughal MO, Kubilay A, Fatichi S, et al. Detailed investigation of vegetation
effects on microclimate by means of computational fluid dynamics (CFD) in a tropical
urban environment. Urban Climate. 2021;39. doi:10.1016/j.uclim.2021.100939
apa: Mughal, M. O., Kubilay, A., Fatichi, S., Meili, N., Carmeliet, J., Edwards,
P., & Burlando, P. (2021). Detailed investigation of vegetation effects on
microclimate by means of computational fluid dynamics (CFD) in a tropical urban
environment. Urban Climate. Elsevier. https://doi.org/10.1016/j.uclim.2021.100939
chicago: Mughal, Muhammad Omer, Aytac Kubilay, Simone Fatichi, Naika Meili, Jan
Carmeliet, Peter Edwards, and Paolo Burlando. “Detailed Investigation of Vegetation
Effects on Microclimate by Means of Computational Fluid Dynamics (CFD) in a Tropical
Urban Environment.” Urban Climate. Elsevier, 2021. https://doi.org/10.1016/j.uclim.2021.100939.
ieee: M. O. Mughal et al., “Detailed investigation of vegetation effects
on microclimate by means of computational fluid dynamics (CFD) in a tropical urban
environment,” Urban Climate, vol. 39. Elsevier, 2021.
ista: Mughal MO, Kubilay A, Fatichi S, Meili N, Carmeliet J, Edwards P, Burlando
P. 2021. Detailed investigation of vegetation effects on microclimate by means
of computational fluid dynamics (CFD) in a tropical urban environment. Urban Climate.
39, 100939.
mla: Mughal, Muhammad Omer, et al. “Detailed Investigation of Vegetation Effects
on Microclimate by Means of Computational Fluid Dynamics (CFD) in a Tropical Urban
Environment.” Urban Climate, vol. 39, 100939, Elsevier, 2021, doi:10.1016/j.uclim.2021.100939.
short: M.O. Mughal, A. Kubilay, S. Fatichi, N. Meili, J. Carmeliet, P. Edwards,
P. Burlando, Urban Climate 39 (2021).
das_tickbox: '1'
date_created: 2026-07-27T12:30:23Z
date_published: 2021-09-01T00:00:00Z
date_updated: 2026-07-30T09:08:16Z
day: '01'
ddc:
- '550'
doi: 10.1016/j.uclim.2021.100939
extern: '1'
has_accepted_license: '1'
intvolume: ' 39'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.uclim.2021.100939
month: '09'
oa: 1
oa_version: Published Version
publication: Urban Climate
publication_identifier:
eissn:
- 2212-0955
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Detailed investigation of vegetation effects on microclimate by means of computational
fluid dynamics (CFD) in a tropical urban environment
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 39
year: '2021'
...
---
OA_type: closed access
_id: '22468'
abstract:
- lang: eng
text: Vegetation establishment, growth and succession in riparian ecosystems are
linked to river flow dynamics and groundwater table fluctuations. This is especially
true in Alpine gravel-bed rivers with wide floodplains, geomorphically active
floods and a strong river-aquifer exchange. The role of short-term groundwater
fluctuations is not always clear in these ecosystems, as it is assumed that phreatophytic
vegetation close to rivers is adapted to such conditions. Here, we provide data
evidence of riparian plant response to short-term groundwater table fluctuations
in a braided gravel-bed river (Maggia). We used indirect physiological variables
for photosynthesis and transpiration—stomatal conductance gs and daily variation
in stem diameter ΔDd—which we measured at six mature riparian trees of the Salicaceae
family at two sites with different mean depths to groundwater during two growing
seasons. The data demonstrate that (a) short-term variation of the groundwater
table affects riparian vegetation—at the site with deeper groundwater, the water
table depth was the best predictor of gs variability, while at the site with shallower
groundwater, temperature and vapour pressure deficit (VPD) were the best predictors
of ΔDd variability; (b) instantaneous stomatal conductance is related to VPD,
but conditioned by groundwater levels, with higher stomatal conductance for the
same radiative input and VPD when the water table was higher for all trees; and
(c) local microclimate measured at tree locations had a stronger predictive power
for gs than valley scale climate, suggesting local climate controls on vegetated
stands on gravel bars. Our results provide evidence of riparian trees undertaking
physiological adjustments to transpiration in response to groundwater stage, depending
on their riparian floodplain setting.
article_number: e2264
article_processing_charge: No
article_type: original
author:
- first_name: Stefano
full_name: Martinetti, Stefano
last_name: Martinetti
- first_name: Simone
full_name: Fatichi, Simone
id: cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6
last_name: Fatichi
- first_name: Marius
full_name: Floriancic, Marius
last_name: Floriancic
- first_name: Paolo
full_name: Burlando, Paolo
last_name: Burlando
- first_name: Peter
full_name: Molnar, Peter
last_name: Molnar
citation:
ama: Martinetti S, Fatichi S, Floriancic M, Burlando P, Molnar P. Field evidence
of riparian vegetation response to groundwater levels in a gravel‐bed river. Ecohydrology.
2021;14(2). doi:10.1002/eco.2264
apa: Martinetti, S., Fatichi, S., Floriancic, M., Burlando, P., & Molnar, P.
(2021). Field evidence of riparian vegetation response to groundwater levels in
a gravel‐bed river. Ecohydrology. Wiley. https://doi.org/10.1002/eco.2264
chicago: Martinetti, Stefano, Simone Fatichi, Marius Floriancic, Paolo Burlando,
and Peter Molnar. “Field Evidence of Riparian Vegetation Response to Groundwater
Levels in a Gravel‐bed River.” Ecohydrology. Wiley, 2021. https://doi.org/10.1002/eco.2264.
ieee: S. Martinetti, S. Fatichi, M. Floriancic, P. Burlando, and P. Molnar, “Field
evidence of riparian vegetation response to groundwater levels in a gravel‐bed
river,” Ecohydrology, vol. 14, no. 2. Wiley, 2021.
ista: Martinetti S, Fatichi S, Floriancic M, Burlando P, Molnar P. 2021. Field evidence
of riparian vegetation response to groundwater levels in a gravel‐bed river. Ecohydrology.
14(2), e2264.
mla: Martinetti, Stefano, et al. “Field Evidence of Riparian Vegetation Response
to Groundwater Levels in a Gravel‐bed River.” Ecohydrology, vol. 14, no.
2, e2264, Wiley, 2021, doi:10.1002/eco.2264.
short: S. Martinetti, S. Fatichi, M. Floriancic, P. Burlando, P. Molnar, Ecohydrology
14 (2021).
das_tickbox: '1'
date_created: 2026-07-27T12:30:23Z
date_published: 2021-03-01T00:00:00Z
date_updated: 2026-07-30T08:46:20Z
day: '01'
doi: 10.1002/eco.2264
extern: '1'
intvolume: ' 14'
issue: '2'
language:
- iso: eng
month: '03'
oa_version: None
publication: Ecohydrology
publication_identifier:
eissn:
- 1936-0592
issn:
- 1936-0584
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Field evidence of riparian vegetation response to groundwater levels in a gravel‐bed
river
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2021'
...
---
OA_type: closed access
_id: '22430'
abstract:
- lang: eng
text: Research to detect changes in precipitation variables has become a topic of
particular interest to understand modifications in water resources availability.
The review is focused on the Italian territory, outlining the “state of the art”
of changes in precipitation regime through a review of 54 published studies on
observed rainfall trend analyses, in the period 1999–2018. The aim is to combine
a large body of knowledge in a single review and to explain the main patterns
of rainfall changes occurred in Italy over the last decades. The analysis focused
on the Total Precipitation (TP) and the number of Wet Days (WDs) indices at the
annual and seasonal scale. A weight factor is introduced to take into account
the differences among studies in geographical area, time series length, and number
of stations. The review is accompanied by the discussion of other rainfall related
variables, that is, precipitation intensity, extreme rainfall events and meteorological
droughts, which are useful to provide a broader picture of rainfall changes. Overall,
there is an agreement about the tendency of a decrease in wet days on the entire
Italy, with limited discrepancies in the various regions. A decrease in wet days
is accompanied by a negative trend (although less evident) in total precipitation,
especially in winter. Nevertheless, a univocal direction of trends (or lack of
thereof) in annual total precipitation and mostly hydrological extreme events
is difficult to achieve.
article_processing_charge: No
article_type: original
author:
- first_name: Enrica
full_name: Caporali, Enrica
last_name: Caporali
- first_name: Marco
full_name: Lompi, Marco
last_name: Lompi
- first_name: Tommaso
full_name: Pacetti, Tommaso
last_name: Pacetti
- first_name: Valentina
full_name: Chiarello, Valentina
last_name: Chiarello
- first_name: Simone
full_name: Fatichi, Simone
id: cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6
last_name: Fatichi
citation:
ama: Caporali E, Lompi M, Pacetti T, Chiarello V, Fatichi S. A review of studies
on observed precipitation trends in Italy. International Journal of Climatology.
2021;41(S1):E1-E25. doi:10.1002/joc.6741
apa: Caporali, E., Lompi, M., Pacetti, T., Chiarello, V., & Fatichi, S. (2021).
A review of studies on observed precipitation trends in Italy. International
Journal of Climatology. Wiley. https://doi.org/10.1002/joc.6741
chicago: Caporali, Enrica, Marco Lompi, Tommaso Pacetti, Valentina Chiarello, and
Simone Fatichi. “A Review of Studies on Observed Precipitation Trends in Italy.”
International Journal of Climatology. Wiley, 2021. https://doi.org/10.1002/joc.6741.
ieee: E. Caporali, M. Lompi, T. Pacetti, V. Chiarello, and S. Fatichi, “A review
of studies on observed precipitation trends in Italy,” International Journal
of Climatology, vol. 41, no. S1. Wiley, pp. E1–E25, 2021.
ista: Caporali E, Lompi M, Pacetti T, Chiarello V, Fatichi S. 2021. A review of
studies on observed precipitation trends in Italy. International Journal of Climatology.
41(S1), E1–E25.
mla: Caporali, Enrica, et al. “A Review of Studies on Observed Precipitation Trends
in Italy.” International Journal of Climatology, vol. 41, no. S1, Wiley,
2021, pp. E1–25, doi:10.1002/joc.6741.
short: E. Caporali, M. Lompi, T. Pacetti, V. Chiarello, S. Fatichi, International
Journal of Climatology 41 (2021) E1–E25.
das_tickbox: '1'
date_created: 2026-07-27T12:30:23Z
date_published: 2021-01-01T00:00:00Z
date_updated: 2026-07-30T09:04:34Z
day: '01'
doi: 10.1002/joc.6741
extern: '1'
intvolume: ' 41'
issue: S1
language:
- iso: eng
month: '01'
oa_version: None
page: E1-E25
publication: International Journal of Climatology
publication_identifier:
eissn:
- 1097-0088
issn:
- 0899-8418
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: A review of studies on observed precipitation trends in Italy
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 41
year: '2021'
...
---
OA_place: publisher
OA_type: hybrid
_id: '22457'
abstract:
- lang: eng
text: "An increase in urban vegetation is an often proposed mitigation strategy
to reduce urban heat and improve outdoor thermal comfort (OTC). Vegetation can
alter urban microclimate through changes in air temperature, mean radiant temperature,
humidity, and wind speed. In this study, we model how street tree and ground vegetation
cover and their structural, optical, interception, and physiological traits control
the diurnal cycle of OTC in different urban densities in a tropical city (Singapore).
For this purpose, we perform a variance based sensitivity analysis of the urban
ecohydrological model UT&C. Model performance is evaluated through a comparison
with local microclimate measurements and OTC is assessed with the Universal Thermal
Climate Index (UTCI).\r\nWe find a pronounced daily cycle of vegetation effects
on UTCI. Tree cover fraction is more efficient in decreasing UTCI during daytime,
while a higher vegetated ground fraction provides more cooling during night. Generally,
increasing vegetation cover fractions do not deter OTC, except in certain urban
densities during some periods of the day. An increase in tree and ground vegetation
fractions provides a higher average UTCI reduction compared to a change in vegetation
traits (0.9 – 2.9 °C vs. 0.7 – 1.1 °C during midday, 10 month average). The
increase in humidity related to plant transpiration prevents further reduction
of UTCI. However, the choice of vegetation traits enhancing tree transpiration
can decrease UTCI during hot periods. These results can inform urban planners
on the selection of vegetation amount and traits to achieve feasible OTC improvements
in tropical cities."
article_number: '107733'
article_processing_charge: No
article_type: original
author:
- first_name: Naika
full_name: Meili, Naika
last_name: Meili
- first_name: Juan Angel
full_name: Acero, Juan Angel
last_name: Acero
- first_name: Nadav
full_name: Peleg, Nadav
last_name: Peleg
- first_name: Gabriele
full_name: Manoli, Gabriele
last_name: Manoli
- first_name: Paolo
full_name: Burlando, Paolo
last_name: Burlando
- first_name: Simone
full_name: Fatichi, Simone
id: cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6
last_name: Fatichi
citation:
ama: Meili N, Acero JA, Peleg N, Manoli G, Burlando P, Fatichi S. Vegetation cover
and plant-trait effects on outdoor thermal comfort in a tropical city. Building
and Environment. 2021;195. doi:10.1016/j.buildenv.2021.107733
apa: Meili, N., Acero, J. A., Peleg, N., Manoli, G., Burlando, P., & Fatichi,
S. (2021). Vegetation cover and plant-trait effects on outdoor thermal comfort
in a tropical city. Building and Environment. Elsevier. https://doi.org/10.1016/j.buildenv.2021.107733
chicago: Meili, Naika, Juan Angel Acero, Nadav Peleg, Gabriele Manoli, Paolo Burlando,
and Simone Fatichi. “Vegetation Cover and Plant-Trait Effects on Outdoor Thermal
Comfort in a Tropical City.” Building and Environment. Elsevier, 2021.
https://doi.org/10.1016/j.buildenv.2021.107733.
ieee: N. Meili, J. A. Acero, N. Peleg, G. Manoli, P. Burlando, and S. Fatichi, “Vegetation
cover and plant-trait effects on outdoor thermal comfort in a tropical city,”
Building and Environment, vol. 195. Elsevier, 2021.
ista: Meili N, Acero JA, Peleg N, Manoli G, Burlando P, Fatichi S. 2021. Vegetation
cover and plant-trait effects on outdoor thermal comfort in a tropical city. Building
and Environment. 195, 107733.
mla: Meili, Naika, et al. “Vegetation Cover and Plant-Trait Effects on Outdoor Thermal
Comfort in a Tropical City.” Building and Environment, vol. 195, 107733,
Elsevier, 2021, doi:10.1016/j.buildenv.2021.107733.
short: N. Meili, J.A. Acero, N. Peleg, G. Manoli, P. Burlando, S. Fatichi, Building
and Environment 195 (2021).
das_tickbox: '1'
date_created: 2026-07-27T12:30:23Z
date_published: 2021-05-01T00:00:00Z
date_updated: 2026-07-30T09:12:50Z
day: '01'
ddc:
- '550'
doi: 10.1016/j.buildenv.2021.107733
extern: '1'
has_accepted_license: '1'
intvolume: ' 195'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.buildenv.2021.107733
month: '05'
oa: 1
oa_version: Published Version
publication: Building and Environment
publication_identifier:
issn:
- 0360-1323
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Vegetation cover and plant-trait effects on outdoor thermal comfort in a tropical
city
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 195
year: '2021'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '22448'
abstract:
- lang: eng
text: Groundwater is a key water resource in semiarid and seasonally dry regions
around the world, which is replenished by intermittent precipitation events and
mediated by vegetation, soil, and regolith properties. Here, a climate reconstruction
of 4500 years for the Jerusalem region was used to determine the relation between
climate, vegetation, and groundwater recharge. Despite changes in air temperature
and vegetation characteristics, simulated recharge remained linearly related to
precipitation over the entire analyzed period, with drier decades having lower
rates of recharge for a given annual precipitation due to soil memory effects.
We show that in recent decades, the lack of changes in the precipitation–groundwater
recharge relation results from the compensating responses of vegetation to increasing
CO2, i.e., increased leaf area and reduced stomatal conductance. This multicentury
relation is expected to be modified by climate change, with changes up to −20%
in recharge for unchanged precipitation, potentially jeopardizing water resource
availability.
article_number: eabe6303
article_processing_charge: Yes
article_type: original
author:
- first_name: Simone
full_name: Fatichi, Simone
id: cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6
last_name: Fatichi
- first_name: Nadav
full_name: Peleg, Nadav
last_name: Peleg
- first_name: Theodoros
full_name: Mastrotheodoros, Theodoros
last_name: Mastrotheodoros
- first_name: Christoforos
full_name: Pappas, Christoforos
last_name: Pappas
- first_name: Gabriele
full_name: Manoli, Gabriele
last_name: Manoli
citation:
ama: Fatichi S, Peleg N, Mastrotheodoros T, Pappas C, Manoli G. An ecohydrological
journey of 4500 years reveals a stable but threatened precipitation–groundwater
recharge relation around Jerusalem. Science Advances. 2021;7(37). doi:10.1126/sciadv.abe6303
apa: Fatichi, S., Peleg, N., Mastrotheodoros, T., Pappas, C., & Manoli, G. (2021).
An ecohydrological journey of 4500 years reveals a stable but threatened precipitation–groundwater
recharge relation around Jerusalem. Science Advances. American Association
for the Advancement of Science. https://doi.org/10.1126/sciadv.abe6303
chicago: Fatichi, Simone, Nadav Peleg, Theodoros Mastrotheodoros, Christoforos Pappas,
and Gabriele Manoli. “An Ecohydrological Journey of 4500 Years Reveals a Stable
but Threatened Precipitation–Groundwater Recharge Relation around Jerusalem.”
Science Advances. American Association for the Advancement of Science,
2021. https://doi.org/10.1126/sciadv.abe6303.
ieee: S. Fatichi, N. Peleg, T. Mastrotheodoros, C. Pappas, and G. Manoli, “An ecohydrological
journey of 4500 years reveals a stable but threatened precipitation–groundwater
recharge relation around Jerusalem,” Science Advances, vol. 7, no. 37.
American Association for the Advancement of Science, 2021.
ista: Fatichi S, Peleg N, Mastrotheodoros T, Pappas C, Manoli G. 2021. An ecohydrological
journey of 4500 years reveals a stable but threatened precipitation–groundwater
recharge relation around Jerusalem. Science Advances. 7(37), eabe6303.
mla: Fatichi, Simone, et al. “An Ecohydrological Journey of 4500 Years Reveals a
Stable but Threatened Precipitation–Groundwater Recharge Relation around Jerusalem.”
Science Advances, vol. 7, no. 37, eabe6303, American Association for the
Advancement of Science, 2021, doi:10.1126/sciadv.abe6303.
short: S. Fatichi, N. Peleg, T. Mastrotheodoros, C. Pappas, G. Manoli, Science Advances
7 (2021).
das_tickbox: '1'
date_created: 2026-07-27T12:30:23Z
date_published: 2021-09-01T00:00:00Z
date_updated: 2026-07-30T09:24:02Z
day: '01'
ddc:
- '550'
doi: 10.1126/sciadv.abe6303
extern: '1'
has_accepted_license: '1'
intvolume: ' 7'
issue: '37'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1126/sciadv.abe6303
month: '09'
oa: 1
oa_version: Published Version
publication: Science Advances
publication_identifier:
eissn:
- 2375-2548
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: An ecohydrological journey of 4500 years reveals a stable but threatened precipitation–groundwater
recharge relation around Jerusalem
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2021'
...
---
OA_place: publisher
OA_type: free access
_id: '22452'
abstract:
- lang: eng
text: 'Model fidelity and accuracy in process representations have been the crux
of scientific hydrological modeling, creating a pressing need for a better linkage
between the development of hydrological models and the growing number of data
sources and measurement techniques. Improved representation of process dynamics
in hydrological models can provide new insights into complex hydrological systems
and point out less understood natural phenomena that need further investigation.
This special issue includes contributions that offer potential solutions and strategies
to improve and test the representation of hydrological processes. We have organized
the special issue contributions into four topical categories: (a) Beyond streamflow,
which looks into the power of complementary data sources in addition to traditionally
used streamflow for process inference. (b) Challenge of subsurface hydrology,
that reflects on lesser understood processes under the surface and their impact
on the model structure. (c) Evaporation in hydrological modeling, linking ecological
aspects to the hydrological functioning of the natural system. Finally, (d) top
down vs. bottom up modeling approaches, relied upon for process representation
analysis. The special issue and our reflection on the contributions present a
snapshot of ongoing efforts for integrating new concepts, knowledge, and data
in process representation in hydrological models.'
article_number: e2021WR030661
article_processing_charge: No
article_type: original
author:
- first_name: Björn
full_name: Guse, Björn
last_name: Guse
- first_name: Simone
full_name: Fatichi, Simone
id: cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6
last_name: Fatichi
- first_name: Shervan
full_name: Gharari, Shervan
last_name: Gharari
- first_name: Lieke A.
full_name: Melsen, Lieke A.
last_name: Melsen
citation:
ama: 'Guse B, Fatichi S, Gharari S, Melsen LA. Advancing process representation
in hydrological models: Integrating new concepts, knowledge, and data. Water
Resources Research. 2021;57(11). doi:10.1029/2021wr030661'
apa: 'Guse, B., Fatichi, S., Gharari, S., & Melsen, L. A. (2021). Advancing
process representation in hydrological models: Integrating new concepts, knowledge,
and data. Water Resources Research. American Geophysical Union. https://doi.org/10.1029/2021wr030661'
chicago: 'Guse, Björn, Simone Fatichi, Shervan Gharari, and Lieke A. Melsen. “Advancing
Process Representation in Hydrological Models: Integrating New Concepts, Knowledge,
and Data.” Water Resources Research. American Geophysical Union, 2021.
https://doi.org/10.1029/2021wr030661.'
ieee: 'B. Guse, S. Fatichi, S. Gharari, and L. A. Melsen, “Advancing process representation
in hydrological models: Integrating new concepts, knowledge, and data,” Water
Resources Research, vol. 57, no. 11. American Geophysical Union, 2021.'
ista: 'Guse B, Fatichi S, Gharari S, Melsen LA. 2021. Advancing process representation
in hydrological models: Integrating new concepts, knowledge, and data. Water Resources
Research. 57(11), e2021WR030661.'
mla: 'Guse, Björn, et al. “Advancing Process Representation in Hydrological Models:
Integrating New Concepts, Knowledge, and Data.” Water Resources Research,
vol. 57, no. 11, e2021WR030661, American Geophysical Union, 2021, doi:10.1029/2021wr030661.'
short: B. Guse, S. Fatichi, S. Gharari, L.A. Melsen, Water Resources Research 57
(2021).
das_tickbox: '1'
date_created: 2026-07-27T12:30:23Z
date_published: 2021-11-01T00:00:00Z
date_updated: 2026-07-30T09:15:11Z
day: '01'
doi: 10.1029/2021wr030661
extern: '1'
intvolume: ' 57'
issue: '11'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1029/2021WR030661
month: '11'
oa: 1
oa_version: Published Version
publication: Water Resources Research
publication_identifier:
eissn:
- 1944-7973
issn:
- 0043-1397
publication_status: published
publisher: American Geophysical Union
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Advancing process representation in hydrological models: Integrating new concepts,
knowledge, and data'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 57
year: '2021'
...
---
_id: '10579'
abstract:
- lang: eng
text: 'We consider a totally asymmetric simple exclusion process (TASEP) consisting
of particles on a lattice that require binding by a "token" to move. Using a combination
of theory and simulations, we address the following questions: (i) How token binding
kinetics affects the current-density relation; (ii) How the current-density relation
depends on the scarcity of tokens; (iii) How tokens propagate the effects of the
locally-imposed disorder (such a slow site) over the entire lattice; (iv) How
a shared pool of tokens couples concurrent TASEPs running on multiple lattices;
(v) How our results translate to TASEPs with open boundaries that exchange particles
with the reservoir. Since real particle motion (including in systems that inspired
the standard TASEP model, e.g., protein synthesis or movement of molecular motors)
is often catalyzed, regulated, actuated, or otherwise mediated, the token-driven
TASEP dynamics analyzed in this paper should allow for a better understanding
of real systems and enable a closer match between TASEP theory and experimental
observations.'
acknowledgement: B.K. thanks Stefano Elefante, Simon Rella, and Michal Hledík for
their help with the usage of the cluster. B.K. additionally thanks Călin Guet and
his group for help and advice. We thank M. Hennessey-Wesen for constructive comments
on the manuscript. We thank Ankita Gupta (Indian Institute of Technology) for spotting
a typographical error in Eq. (49) in the preprint version of this paper.
article_number: '2112.13558'
article_processing_charge: No
arxiv: 1
author:
- first_name: Bor
full_name: Kavcic, Bor
id: 350F91D2-F248-11E8-B48F-1D18A9856A87
last_name: Kavcic
orcid: 0000-0001-6041-254X
- first_name: Gašper
full_name: Tkačik, Gašper
id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
last_name: Tkačik
orcid: 0000-0002-6699-1455
citation:
ama: Kavcic B, Tkačik G. Token-driven totally asymmetric simple exclusion process.
arXiv. doi:10.48550/arXiv.2112.13558
apa: Kavcic, B., & Tkačik, G. (n.d.). Token-driven totally asymmetric simple
exclusion process. arXiv. https://doi.org/10.48550/arXiv.2112.13558
chicago: Kavcic, Bor, and Gašper Tkačik. “Token-Driven Totally Asymmetric Simple
Exclusion Process.” ArXiv, n.d. https://doi.org/10.48550/arXiv.2112.13558.
ieee: B. Kavcic and G. Tkačik, “Token-driven totally asymmetric simple exclusion
process,” arXiv. .
ista: Kavcic B, Tkačik G. Token-driven totally asymmetric simple exclusion process.
arXiv, 2112.13558.
mla: Kavcic, Bor, and Gašper Tkačik. “Token-Driven Totally Asymmetric Simple Exclusion
Process.” ArXiv, 2112.13558, doi:10.48550/arXiv.2112.13558.
short: B. Kavcic, G. Tkačik, ArXiv (n.d.).
corr_author: '1'
date_created: 2021-12-28T06:52:09Z
date_published: 2021-12-27T00:00:00Z
date_updated: 2026-08-04T08:34:23Z
day: '27'
ddc:
- '530'
department:
- _id: GaTk
doi: 10.48550/arXiv.2112.13558
external_id:
arxiv:
- '2112.13558'
has_accepted_license: '1'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/2112.13558
month: '12'
oa: 1
oa_version: Preprint
publication: arXiv
publication_status: submitted
related_material:
record:
- id: '19785'
relation: later_version
status: public
status: public
title: Token-driven totally asymmetric simple exclusion process
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
OA_place: repository
OA_type: green
_id: '22546'
abstract:
- lang: eng
text: Increasing urban green spaces and canopy cover requires careful planning of
irrigation strategies, especially in arid and semiarid areas. This study investigates
how vegetation cover and irrigation affect the water balance and vegetation productivity
of a small urban reserve in the Melbourne metropolitan area, Australia. Using
a mechanistic ecohydrological model, a series of numerical experiments were carried
out for the period 1999–2018, which included a prolonged drought. Results indicated
that irrigation played an essential role in helping both trees and grass productivity
by increasing soil moisture and vegetation water access during the drought. With
10% tree cover, grass benefitted more than trees by increasing irrigation, and
trees coped well with drought even without additional water. However, trees strongly
relied on irrigation to maintain productivity when tree cover increased, highlighting
the need for a sustainable balance between increasing urban greening and water
conservation. Differences in soil properties and rooting strategies were also
found to strongly modify the need for irrigation and the competition for water.
These results provide quantitative insights on how increasing tree cover and vegetation
diversity may impact irrigation requirements, highlighting the key role of mechanistic
numerical models to support urban planners in the evaluation and design of urban
green spaces.
article_number: '104198'
article_processing_charge: No
article_type: original
author:
- first_name: V.
full_name: Marchionni, V.
last_name: Marchionni
- first_name: Simone
full_name: Fatichi, Simone
id: cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6
last_name: Fatichi
- first_name: N.
full_name: Tapper, N.
last_name: Tapper
- first_name: J.P.
full_name: Walker, J.P.
last_name: Walker
- first_name: G.
full_name: Manoli, G.
last_name: Manoli
- first_name: E.
full_name: Daly, E.
last_name: Daly
citation:
ama: Marchionni V, Fatichi S, Tapper N, Walker JP, Manoli G, Daly E. Assessing vegetation
response to irrigation strategies and soil properties in an urban reserve in southeast
Australia. Landscape and Urban Planning. 2021;215. doi:10.1016/j.landurbplan.2021.104198
apa: Marchionni, V., Fatichi, S., Tapper, N., Walker, J. P., Manoli, G., & Daly,
E. (2021). Assessing vegetation response to irrigation strategies and soil properties
in an urban reserve in southeast Australia. Landscape and Urban Planning.
Elsevier. https://doi.org/10.1016/j.landurbplan.2021.104198
chicago: Marchionni, V., Simone Fatichi, N. Tapper, J.P. Walker, G. Manoli, and
E. Daly. “Assessing Vegetation Response to Irrigation Strategies and Soil Properties
in an Urban Reserve in Southeast Australia.” Landscape and Urban Planning.
Elsevier, 2021. https://doi.org/10.1016/j.landurbplan.2021.104198.
ieee: V. Marchionni, S. Fatichi, N. Tapper, J. P. Walker, G. Manoli, and E. Daly,
“Assessing vegetation response to irrigation strategies and soil properties in
an urban reserve in southeast Australia,” Landscape and Urban Planning,
vol. 215. Elsevier, 2021.
ista: Marchionni V, Fatichi S, Tapper N, Walker JP, Manoli G, Daly E. 2021. Assessing
vegetation response to irrigation strategies and soil properties in an urban reserve
in southeast Australia. Landscape and Urban Planning. 215, 104198.
mla: Marchionni, V., et al. “Assessing Vegetation Response to Irrigation Strategies
and Soil Properties in an Urban Reserve in Southeast Australia.” Landscape
and Urban Planning, vol. 215, 104198, Elsevier, 2021, doi:10.1016/j.landurbplan.2021.104198.
short: V. Marchionni, S. Fatichi, N. Tapper, J.P. Walker, G. Manoli, E. Daly, Landscape
and Urban Planning 215 (2021).
das_tickbox: '1'
date_created: 2026-07-27T12:30:24Z
date_published: 2021-11-01T00:00:00Z
date_updated: 2026-08-06T08:20:58Z
day: '01'
doi: 10.1016/j.landurbplan.2021.104198
extern: '1'
intvolume: ' 215'
keyword:
- Urban green spaces
- Remnant vegetation
- Irrigation
- Stormwater harvesting
- Ecohydrological modeling
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://discovery.ucl.ac.uk/id/eprint/10133304/1/REVISED_Manuscript_Marchionni.pdf
month: '11'
oa: 1
oa_version: Preprint
publication: Landscape and Urban Planning
publication_identifier:
eissn:
- 1872-6062
issn:
- 0169-2046
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Assessing vegetation response to irrigation strategies and soil properties
in an urban reserve in southeast Australia
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 215
year: '2021'
...
---
OA_place: publisher
OA_type: free access
_id: '22570'
abstract:
- lang: eng
text: Atmospheric carbon dioxide concentration ([CO 2 ]) is increasing, which increases
leaf-scalephotosynthesis and intrinsic water-use efficiency. These direct responses
have the potential toincrease plant growth, vegetation biomass, and soil organic
matter; transferring carbon from theatmosphere into terrestrial ecosystems (a
carbon sink). A substantial global terrestrial carbon sinkwould slow the rate
of [CO 2] increase and thus climate change. However, ecosystem CO2responses are
complex or confounded by concurrent changes in multiple agents of global changeand
evidence for a [CO 2]-driven terrestrial carbon sink can appear contradictory.
Here wesynthesize theory and broad, multidisciplinary evidence for the effects
of increasing [CO 2](iCO 2) on the global terrestrial carbon sink. Evidence suggests
a substantial increase in globalphotosynthesis since pre-industrial times. Established
theory, supported by experiments,indicates that iCO 2 is likely responsible for
about half of the increase. Global carbon budgeting,atmospheric data, and forest
inventories indicate a historical carbon sink, and these apparentiCO 2 responses
are high in comparison to experiments and predictions from theory. Plantmortality
and soil carbon iCO 2 responses are highly uncertain. In conclusion, a range of
evidencesupports a positive terrestrial carbon sink in response to iCO2 , albeit
with uncertain magnitudeand strong suggestion of a role for additional agents
of global change.
article_processing_charge: No
article_type: original
author:
- first_name: Anthony P.
full_name: Walker, Anthony P.
last_name: Walker
- first_name: Martin G.
full_name: De Kauwe, Martin G.
last_name: De Kauwe
- first_name: Ana
full_name: Bastos, Ana
last_name: Bastos
- first_name: Soumaya
full_name: Belmecheri, Soumaya
last_name: Belmecheri
- first_name: Katerina
full_name: Georgiou, Katerina
last_name: Georgiou
- first_name: Ralph F.
full_name: Keeling, Ralph F.
last_name: Keeling
- first_name: Sean M.
full_name: McMahon, Sean M.
last_name: McMahon
- first_name: Belinda E.
full_name: Medlyn, Belinda E.
last_name: Medlyn
- first_name: David J. P.
full_name: Moore, David J. P.
last_name: Moore
- first_name: Richard J.
full_name: Norby, Richard J.
last_name: Norby
- first_name: Sönke
full_name: Zaehle, Sönke
last_name: Zaehle
- first_name: Kristina J.
full_name: Anderson‐Teixeira, Kristina J.
last_name: Anderson‐Teixeira
- first_name: Giovanna
full_name: Battipaglia, Giovanna
last_name: Battipaglia
- first_name: Roel J. W.
full_name: Brienen, Roel J. W.
last_name: Brienen
- first_name: Kristine G.
full_name: Cabugao, Kristine G.
last_name: Cabugao
- first_name: Maxime
full_name: Cailleret, Maxime
last_name: Cailleret
- first_name: Elliott
full_name: Campbell, Elliott
last_name: Campbell
- first_name: Josep G.
full_name: Canadell, Josep G.
last_name: Canadell
- first_name: Philippe
full_name: Ciais, Philippe
last_name: Ciais
- first_name: Matthew E.
full_name: Craig, Matthew E.
last_name: Craig
- first_name: David S.
full_name: Ellsworth, David S.
last_name: Ellsworth
- first_name: Graham D.
full_name: Farquhar, Graham D.
last_name: Farquhar
- first_name: Simone
full_name: Fatichi, Simone
id: cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6
last_name: Fatichi
- first_name: Joshua B.
full_name: Fisher, Joshua B.
last_name: Fisher
- first_name: David C.
full_name: Frank, David C.
last_name: Frank
- first_name: Heather
full_name: Graven, Heather
last_name: Graven
- first_name: Lianhong
full_name: Gu, Lianhong
last_name: Gu
- first_name: Vanessa
full_name: Haverd, Vanessa
last_name: Haverd
- first_name: Kelly
full_name: Heilman, Kelly
last_name: Heilman
- first_name: Martin
full_name: Heimann, Martin
last_name: Heimann
- first_name: Bruce A.
full_name: Hungate, Bruce A.
last_name: Hungate
- first_name: Colleen M.
full_name: Iversen, Colleen M.
last_name: Iversen
- first_name: Fortunat
full_name: Joos, Fortunat
last_name: Joos
- first_name: Mingkai
full_name: Jiang, Mingkai
last_name: Jiang
- first_name: Trevor F.
full_name: Keenan, Trevor F.
last_name: Keenan
- first_name: Jürgen
full_name: Knauer, Jürgen
last_name: Knauer
- first_name: Christian
full_name: Körner, Christian
last_name: Körner
- first_name: Victor O.
full_name: Leshyk, Victor O.
last_name: Leshyk
- first_name: Sebastian
full_name: Leuzinger, Sebastian
last_name: Leuzinger
- first_name: Yao
full_name: Liu, Yao
last_name: Liu
- first_name: Natasha
full_name: MacBean, Natasha
last_name: MacBean
- first_name: Yadvinder
full_name: Malhi, Yadvinder
last_name: Malhi
- first_name: Tim R.
full_name: McVicar, Tim R.
last_name: McVicar
- first_name: Josep
full_name: Penuelas, Josep
last_name: Penuelas
- first_name: Julia
full_name: Pongratz, Julia
last_name: Pongratz
- first_name: A. Shafer
full_name: Powell, A. Shafer
last_name: Powell
- first_name: Terhi
full_name: Riutta, Terhi
last_name: Riutta
- first_name: Manon E. B.
full_name: Sabot, Manon E. B.
last_name: Sabot
- first_name: Juergen
full_name: Schleucher, Juergen
last_name: Schleucher
- first_name: Stephen
full_name: Sitch, Stephen
last_name: Sitch
- first_name: William K.
full_name: Smith, William K.
last_name: Smith
- first_name: Benjamin
full_name: Sulman, Benjamin
last_name: Sulman
- first_name: Benton
full_name: Taylor, Benton
last_name: Taylor
- first_name: César
full_name: Terrer, César
last_name: Terrer
- first_name: Margaret S.
full_name: Torn, Margaret S.
last_name: Torn
- first_name: Kathleen K.
full_name: Treseder, Kathleen K.
last_name: Treseder
- first_name: Anna T.
full_name: Trugman, Anna T.
last_name: Trugman
- first_name: Susan E.
full_name: Trumbore, Susan E.
last_name: Trumbore
- first_name: Phillip J.
full_name: van Mantgem, Phillip J.
last_name: van Mantgem
- first_name: Steve L.
full_name: Voelker, Steve L.
last_name: Voelker
- first_name: Mary E.
full_name: Whelan, Mary E.
last_name: Whelan
- first_name: Pieter A.
full_name: Zuidema, Pieter A.
last_name: Zuidema
citation:
ama: Walker AP, De Kauwe MG, Bastos A, et al. Integrating the evidence for a terrestrial
carbon sink caused by increasing atmospheric CO2. New Phytologist. 2021;229(5):2413-2445.
doi:10.1111/nph.16866
apa: Walker, A. P., De Kauwe, M. G., Bastos, A., Belmecheri, S., Georgiou, K., Keeling,
R. F., … Zuidema, P. A. (2021). Integrating the evidence for a terrestrial carbon
sink caused by increasing atmospheric CO2. New Phytologist. Wiley. https://doi.org/10.1111/nph.16866
chicago: Walker, Anthony P., Martin G. De Kauwe, Ana Bastos, Soumaya Belmecheri,
Katerina Georgiou, Ralph F. Keeling, Sean M. McMahon, et al. “Integrating the
Evidence for a Terrestrial Carbon Sink Caused by Increasing Atmospheric CO2.”
New Phytologist. Wiley, 2021. https://doi.org/10.1111/nph.16866.
ieee: A. P. Walker et al., “Integrating the evidence for a terrestrial carbon
sink caused by increasing atmospheric CO2,” New Phytologist, vol. 229,
no. 5. Wiley, pp. 2413–2445, 2021.
ista: Walker AP, De Kauwe MG, Bastos A, Belmecheri S, Georgiou K, Keeling RF, McMahon
SM, Medlyn BE, Moore DJP, Norby RJ, Zaehle S, Anderson‐Teixeira KJ, Battipaglia
G, Brienen RJW, Cabugao KG, Cailleret M, Campbell E, Canadell JG, Ciais P, Craig
ME, Ellsworth DS, Farquhar GD, Fatichi S, Fisher JB, Frank DC, Graven H, Gu L,
Haverd V, Heilman K, Heimann M, Hungate BA, Iversen CM, Joos F, Jiang M, Keenan
TF, Knauer J, Körner C, Leshyk VO, Leuzinger S, Liu Y, MacBean N, Malhi Y, McVicar
TR, Penuelas J, Pongratz J, Powell AS, Riutta T, Sabot MEB, Schleucher J, Sitch
S, Smith WK, Sulman B, Taylor B, Terrer C, Torn MS, Treseder KK, Trugman AT, Trumbore
SE, van Mantgem PJ, Voelker SL, Whelan ME, Zuidema PA. 2021. Integrating the evidence
for a terrestrial carbon sink caused by increasing atmospheric CO2. New Phytologist.
229(5), 2413–2445.
mla: Walker, Anthony P., et al. “Integrating the Evidence for a Terrestrial Carbon
Sink Caused by Increasing Atmospheric CO2.” New Phytologist, vol. 229,
no. 5, Wiley, 2021, pp. 2413–45, doi:10.1111/nph.16866.
short: A.P. Walker, M.G. De Kauwe, A. Bastos, S. Belmecheri, K. Georgiou, R.F. Keeling,
S.M. McMahon, B.E. Medlyn, D.J.P. Moore, R.J. Norby, S. Zaehle, K.J. Anderson‐Teixeira,
G. Battipaglia, R.J.W. Brienen, K.G. Cabugao, M. Cailleret, E. Campbell, J.G.
Canadell, P. Ciais, M.E. Craig, D.S. Ellsworth, G.D. Farquhar, S. Fatichi, J.B.
Fisher, D.C. Frank, H. Graven, L. Gu, V. Haverd, K. Heilman, M. Heimann, B.A.
Hungate, C.M. Iversen, F. Joos, M. Jiang, T.F. Keenan, J. Knauer, C. Körner, V.O.
Leshyk, S. Leuzinger, Y. Liu, N. MacBean, Y. Malhi, T.R. McVicar, J. Penuelas,
J. Pongratz, A.S. Powell, T. Riutta, M.E.B. Sabot, J. Schleucher, S. Sitch, W.K.
Smith, B. Sulman, B. Taylor, C. Terrer, M.S. Torn, K.K. Treseder, A.T. Trugman,
S.E. Trumbore, P.J. van Mantgem, S.L. Voelker, M.E. Whelan, P.A. Zuidema, New
Phytologist 229 (2021) 2413–2445.
das_tickbox: '1'
date_created: 2026-07-27T12:30:24Z
date_published: 2021-03-01T00:00:00Z
date_updated: 2026-08-06T08:39:39Z
day: '01'
doi: 10.1111/nph.16866
extern: '1'
external_id:
pmid:
- '32789857'
intvolume: ' 229'
issue: '5'
keyword:
- Beta factor
- Carbon dioxide
- CO2 fertilization
- CO2-fertilization hypothesis
- Free-air CO2 enrichment (FACE)
- Global carbon cycle
- Land–atmosphere feedback
- Terrestrial ecosystems
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1111/nph.16866
month: '03'
oa: 1
oa_version: Published Version
page: 2413-2445
pmid: 1
publication: New Phytologist
publication_identifier:
eissn:
- 1469-8137
issn:
- 0028-646X
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Integrating the evidence for a terrestrial carbon sink caused by increasing
atmospheric CO2
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 229
year: '2021'
...