---
_id: '74'
abstract:
- lang: eng
text: "We study the Gromov waist in the sense of t-neighborhoods for measures in
the Euclidean space, motivated by the famous theorem of Gromov about
\ the waist of radially symmetric Gaussian measures. In particular, it turns
our possible to extend Gromov’s original result to the case of not necessarily
\ radially symmetric Gaussian measure. We also provide examples of measures
having no t-neighborhood waist property, including a rather wide class\r\nof compactly
supported radially symmetric measures and their maps into the Euclidean space
of dimension at least 2.\r\nWe use a simpler form of Gromov’s pancake argument
\ to produce some estimates of t-neighborhoods of (weighted) volume-critical
submanifolds in the spirit of the waist theorems, including neighborhoods of algebraic
manifolds in the complex projective space. In the appendix of this paper we provide
for reader’s convenience a more detailed explanation of the Caffarelli theorem
that we use to handle not necessarily radially symmetric Gaussian\r\nmeasures."
article_processing_charge: No
arxiv: 1
author:
- first_name: Arseniy
full_name: Akopyan, Arseniy
id: 430D2C90-F248-11E8-B48F-1D18A9856A87
last_name: Akopyan
orcid: 0000-0002-2548-617X
- first_name: Roman
full_name: Karasev, Roman
last_name: Karasev
citation:
ama: 'Akopyan A, Karasev R. Gromov’s waist of non-radial Gaussian measures and radial
non-Gaussian measures. In: Klartag B, Milman E, eds. Geometric Aspects of Functional
Analysis. Vol 2256. LNM. Springer Nature; 2020:1-27. doi:10.1007/978-3-030-36020-7_1'
apa: Akopyan, A., & Karasev, R. (2020). Gromov’s waist of non-radial Gaussian
measures and radial non-Gaussian measures. In B. Klartag & E. Milman (Eds.),
Geometric Aspects of Functional Analysis (Vol. 2256, pp. 1–27). Springer
Nature. https://doi.org/10.1007/978-3-030-36020-7_1
chicago: Akopyan, Arseniy, and Roman Karasev. “Gromov’s Waist of Non-Radial Gaussian
Measures and Radial Non-Gaussian Measures.” In Geometric Aspects of Functional
Analysis, edited by Bo’az Klartag and Emanuel Milman, 2256:1–27. LNM. Springer
Nature, 2020. https://doi.org/10.1007/978-3-030-36020-7_1.
ieee: A. Akopyan and R. Karasev, “Gromov’s waist of non-radial Gaussian measures
and radial non-Gaussian measures,” in Geometric Aspects of Functional Analysis,
vol. 2256, B. Klartag and E. Milman, Eds. Springer Nature, 2020, pp. 1–27.
ista: 'Akopyan A, Karasev R. 2020.Gromov’s waist of non-radial Gaussian measures
and radial non-Gaussian measures. In: Geometric Aspects of Functional Analysis.
vol. 2256, 1–27.'
mla: Akopyan, Arseniy, and Roman Karasev. “Gromov’s Waist of Non-Radial Gaussian
Measures and Radial Non-Gaussian Measures.” Geometric Aspects of Functional
Analysis, edited by Bo’az Klartag and Emanuel Milman, vol. 2256, Springer
Nature, 2020, pp. 1–27, doi:10.1007/978-3-030-36020-7_1.
short: A. Akopyan, R. Karasev, in:, B. Klartag, E. Milman (Eds.), Geometric Aspects
of Functional Analysis, Springer Nature, 2020, pp. 1–27.
date_created: 2018-12-11T11:44:29Z
date_published: 2020-06-21T00:00:00Z
date_updated: 2025-07-10T11:54:33Z
day: '21'
department:
- _id: HeEd
- _id: JaMa
doi: 10.1007/978-3-030-36020-7_1
ec_funded: 1
editor:
- first_name: Bo'az
full_name: Klartag, Bo'az
last_name: Klartag
- first_name: Emanuel
full_name: Milman, Emanuel
last_name: Milman
external_id:
arxiv:
- '1808.07350'
isi:
- '000557689300003'
intvolume: ' 2256'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1808.07350
month: '06'
oa: 1
oa_version: Preprint
page: 1-27
project:
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '716117'
name: Optimal Transport and Stochastic Dynamics
publication: Geometric Aspects of Functional Analysis
publication_identifier:
eisbn:
- '9783030360207'
eissn:
- 1617-9692
isbn:
- '9783030360191'
issn:
- 0075-8434
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
series_title: LNM
status: public
title: Gromov's waist of non-radial Gaussian measures and radial non-Gaussian measures
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2256
year: '2020'
...
---
_id: '7410'
abstract:
- lang: eng
text: 'Epiboly is a conserved gastrulation movement describing the thinning and
spreading of a sheet or multi-layer of cells. The zebrafish embryo has emerged
as a vital model system to address the cellular and molecular mechanisms that
drive epiboly. In the zebrafish embryo, the blastoderm, consisting of a simple
squamous epithelium (the enveloping layer) and an underlying mass of deep cells,
as well as a yolk nuclear syncytium (the yolk syncytial layer) undergo epiboly
to internalize the yolk cell during gastrulation. The major events during zebrafish
epiboly are: expansion of the enveloping layer and the internal yolk syncytial
layer, reduction and removal of the yolk membrane ahead of the advancing blastoderm
margin and deep cell rearrangements between the enveloping layer and yolk syncytial
layer to thin the blastoderm. Here, work addressing the cellular and molecular
mechanisms as well as the sources of the mechanical forces that underlie these
events is reviewed. The contribution of recent findings to the current model of
epiboly as well as open questions and future prospects are also discussed.'
article_processing_charge: No
author:
- first_name: Ashley E.E.
full_name: Bruce, Ashley E.E.
last_name: Bruce
- first_name: Carl-Philipp J
full_name: Heisenberg, Carl-Philipp J
id: 39427864-F248-11E8-B48F-1D18A9856A87
last_name: Heisenberg
orcid: 0000-0002-0912-4566
citation:
ama: 'Bruce AEE, Heisenberg C-PJ. Mechanisms of zebrafish epiboly: A current view.
In: Solnica-Krezel L, ed. Gastrulation: From Embryonic Pattern to Form.
Vol 136. Current Topics in Developmental Biology. Elsevier; 2020:319-341. doi:10.1016/bs.ctdb.2019.07.001'
apa: 'Bruce, A. E. E., & Heisenberg, C.-P. J. (2020). Mechanisms of zebrafish
epiboly: A current view. In L. Solnica-Krezel (Ed.), Gastrulation: From Embryonic
Pattern to Form (Vol. 136, pp. 319–341). Elsevier. https://doi.org/10.1016/bs.ctdb.2019.07.001'
chicago: 'Bruce, Ashley E.E., and Carl-Philipp J Heisenberg. “Mechanisms of Zebrafish
Epiboly: A Current View.” In Gastrulation: From Embryonic Pattern to Form,
edited by Lilianna Solnica-Krezel, 136:319–41. Current Topics in Developmental
Biology. Elsevier, 2020. https://doi.org/10.1016/bs.ctdb.2019.07.001.'
ieee: 'A. E. E. Bruce and C.-P. J. Heisenberg, “Mechanisms of zebrafish epiboly:
A current view,” in Gastrulation: From Embryonic Pattern to Form, vol.
136, L. Solnica-Krezel, Ed. Elsevier, 2020, pp. 319–341.'
ista: 'Bruce AEE, Heisenberg C-PJ. 2020.Mechanisms of zebrafish epiboly: A current
view. In: Gastrulation: From Embryonic Pattern to Form. vol. 136, 319–341.'
mla: 'Bruce, Ashley E. E., and Carl-Philipp J. Heisenberg. “Mechanisms of Zebrafish
Epiboly: A Current View.” Gastrulation: From Embryonic Pattern to Form,
edited by Lilianna Solnica-Krezel, vol. 136, Elsevier, 2020, pp. 319–41, doi:10.1016/bs.ctdb.2019.07.001.'
short: 'A.E.E. Bruce, C.-P.J. Heisenberg, in:, L. Solnica-Krezel (Ed.), Gastrulation:
From Embryonic Pattern to Form, Elsevier, 2020, pp. 319–341.'
date_created: 2020-01-30T09:24:06Z
date_published: 2020-01-01T00:00:00Z
date_updated: 2025-06-12T07:03:19Z
day: '01'
department:
- _id: CaHe
doi: 10.1016/bs.ctdb.2019.07.001
editor:
- first_name: 'Lilianna '
full_name: 'Solnica-Krezel, Lilianna '
last_name: Solnica-Krezel
external_id:
isi:
- '000611830600012'
pmid:
- '31959293'
intvolume: ' 136'
isi: 1
language:
- iso: eng
month: '01'
oa_version: None
page: 319-341
pmid: 1
publication: 'Gastrulation: From Embryonic Pattern to Form'
publication_identifier:
isbn:
- '9780128127988'
issn:
- 0070-2153
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
series_title: Current Topics in Developmental Biology
status: public
title: 'Mechanisms of zebrafish epiboly: A current view'
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 136
year: '2020'
...
---
_id: '7416'
abstract:
- lang: eng
text: Earlier, we demonstrated that transcript levels of METAL TOLERANCE PROTEIN2
(MTP2) and of HEAVY METAL ATPase2 (HMA2) increase strongly in roots of Arabidopsis
upon prolonged zinc (Zn) deficiency and respond to shoot physiological Zn status,
and not to the local Zn status in roots. This provided evidence for shoot-to-root
communication in the acclimation of plants to Zn deficiency. Zn-deficient soils
limit both the yield and quality of agricultural crops and can result in clinically
relevant nutritional Zn deficiency in human populations. Implementing Zn deficiency
during cultivation of the model plant Arabidopsis thaliana on agar-solidified
media is difficult because trace element contaminations are present in almost
all commercially available agars. Here, we demonstrate root morphological acclimations
to Zn deficiency on agar-solidified medium following the effective removal of
contaminants. These advancements allow reproducible phenotyping toward understanding
fundamental plant responses to deficiencies of Zn and other essential trace elements.
article_number: '1687175'
article_processing_charge: No
article_type: original
author:
- first_name: Scott A
full_name: Sinclair, Scott A
id: 2D99FE6A-F248-11E8-B48F-1D18A9856A87
last_name: Sinclair
orcid: 0000-0002-4566-0593
- first_name: U.
full_name: Krämer, U.
last_name: Krämer
citation:
ama: Sinclair SA, Krämer U. Generation of effective zinc-deficient agar-solidified
media allows identification of root morphology changes in response to zinc limitation.
Plant Signaling & Behavior. 2020;15(1). doi:10.1080/15592324.2019.1687175
apa: Sinclair, S. A., & Krämer, U. (2020). Generation of effective zinc-deficient
agar-solidified media allows identification of root morphology changes in response
to zinc limitation. Plant Signaling & Behavior. Taylor & Francis.
https://doi.org/10.1080/15592324.2019.1687175
chicago: Sinclair, Scott A, and U. Krämer. “Generation of Effective Zinc-Deficient
Agar-Solidified Media Allows Identification of Root Morphology Changes in Response
to Zinc Limitation.” Plant Signaling & Behavior. Taylor & Francis,
2020. https://doi.org/10.1080/15592324.2019.1687175.
ieee: S. A. Sinclair and U. Krämer, “Generation of effective zinc-deficient agar-solidified
media allows identification of root morphology changes in response to zinc limitation,”
Plant Signaling & Behavior, vol. 15, no. 1. Taylor & Francis, 2020.
ista: Sinclair SA, Krämer U. 2020. Generation of effective zinc-deficient agar-solidified
media allows identification of root morphology changes in response to zinc limitation.
Plant Signaling & Behavior. 15(1), 1687175.
mla: Sinclair, Scott A., and U. Krämer. “Generation of Effective Zinc-Deficient
Agar-Solidified Media Allows Identification of Root Morphology Changes in Response
to Zinc Limitation.” Plant Signaling & Behavior, vol. 15, no. 1, 1687175,
Taylor & Francis, 2020, doi:10.1080/15592324.2019.1687175.
short: S.A. Sinclair, U. Krämer, Plant Signaling & Behavior 15 (2020).
date_created: 2020-01-30T10:12:04Z
date_published: 2020-01-01T00:00:00Z
date_updated: 2023-10-17T09:01:48Z
day: '01'
department:
- _id: JiFr
doi: 10.1080/15592324.2019.1687175
external_id:
isi:
- '000494909300001'
pmid:
- '31696764'
intvolume: ' 15'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7012054
month: '01'
oa: 1
oa_version: Submitted Version
pmid: 1
publication: Plant Signaling & Behavior
publication_identifier:
issn:
- 1559-2324
publication_status: published
publisher: Taylor & Francis
quality_controlled: '1'
scopus_import: '1'
status: public
title: Generation of effective zinc-deficient agar-solidified media allows identification
of root morphology changes in response to zinc limitation
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 15
year: '2020'
...
---
_id: '7417'
abstract:
- lang: eng
text: Previously, we reported that the allelic de-etiolated by zinc (dez) and trichome
birefringence (tbr) mutants exhibit photomorphogenic development in the dark,
which is enhanced by high Zn. TRICHOME BIREFRINGENCE-LIKE proteins had been implicated
in transferring acetyl groups to various hemicelluloses. Pectin O-acetylation
levels were lower in dark-grown dez seedlings than in the wild type. We observed
Zn-enhanced photomorphogenesis in the dark also in the reduced wall acetylation
2 (rwa2-3) mutant, which exhibits lowered O-acetylation levels of cell wall macromolecules
including pectins and xyloglucans, supporting a role for cell wall macromolecule
O-acetylation in the photomorphogenic phenotypes of rwa2-3 and dez. Application
of very short oligogalacturonides (vsOGs) restored skotomorphogenesis in dark-grown
dez and rwa2-3. Here we demonstrate that in dez, O-acetylation of non-pectin cell
wall components, notably of xyloglucan, is enhanced. Our results highlight the
complexity of cell wall homeostasis and indicate against an influence of xyloglucan
O-acetylation on light-dependent seedling development.
article_number: e1687185
article_processing_charge: No
article_type: original
author:
- first_name: Scott A
full_name: Sinclair, Scott A
id: 2D99FE6A-F248-11E8-B48F-1D18A9856A87
last_name: Sinclair
orcid: 0000-0002-4566-0593
- first_name: S.
full_name: Gille, S.
last_name: Gille
- first_name: M.
full_name: Pauly, M.
last_name: Pauly
- first_name: U.
full_name: Krämer, U.
last_name: Krämer
citation:
ama: Sinclair SA, Gille S, Pauly M, Krämer U. Regulation of acetylation of plant
cell wall components is complex and responds to external stimuli. Plant Signaling
& Behavior. 2020;15(1). doi:10.1080/15592324.2019.1687185
apa: Sinclair, S. A., Gille, S., Pauly, M., & Krämer, U. (2020). Regulation
of acetylation of plant cell wall components is complex and responds to external
stimuli. Plant Signaling & Behavior. Informa UK Limited. https://doi.org/10.1080/15592324.2019.1687185
chicago: Sinclair, Scott A, S. Gille, M. Pauly, and U. Krämer. “Regulation of Acetylation
of Plant Cell Wall Components Is Complex and Responds to External Stimuli.” Plant
Signaling & Behavior. Informa UK Limited, 2020. https://doi.org/10.1080/15592324.2019.1687185.
ieee: S. A. Sinclair, S. Gille, M. Pauly, and U. Krämer, “Regulation of acetylation
of plant cell wall components is complex and responds to external stimuli,” Plant
Signaling & Behavior, vol. 15, no. 1. Informa UK Limited, 2020.
ista: Sinclair SA, Gille S, Pauly M, Krämer U. 2020. Regulation of acetylation of
plant cell wall components is complex and responds to external stimuli. Plant
Signaling & Behavior. 15(1), e1687185.
mla: Sinclair, Scott A., et al. “Regulation of Acetylation of Plant Cell Wall Components
Is Complex and Responds to External Stimuli.” Plant Signaling & Behavior,
vol. 15, no. 1, e1687185, Informa UK Limited, 2020, doi:10.1080/15592324.2019.1687185.
short: S.A. Sinclair, S. Gille, M. Pauly, U. Krämer, Plant Signaling & Behavior
15 (2020).
date_created: 2020-01-30T10:14:14Z
date_published: 2020-01-01T00:00:00Z
date_updated: 2023-09-06T15:23:04Z
day: '01'
department:
- _id: JiFr
doi: 10.1080/15592324.2019.1687185
external_id:
isi:
- '000494907500001'
pmid:
- '31696770'
intvolume: ' 15'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7012154
month: '01'
oa: 1
oa_version: Submitted Version
pmid: 1
publication: Plant Signaling & Behavior
publication_identifier:
issn:
- 1559-2324
publication_status: published
publisher: Informa UK Limited
quality_controlled: '1'
scopus_import: '1'
status: public
title: Regulation of acetylation of plant cell wall components is complex and responds
to external stimuli
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 15
year: '2020'
...
---
_id: '7428'
abstract:
- lang: eng
text: In the superconducting regime of FeTe(1−x)Sex, there exist two types of vortices
which are distinguished by the presence or absence of zero-energy states in their
core. To understand their origin, we examine the interplay of Zeeman coupling
and superconducting pairings in three-dimensional metals with band inversion.
Weak Zeeman fields are found to suppress intraorbital spin-singlet pairing, known
to localize the states at the ends of the vortices on the surface. On the other
hand, an orbital-triplet pairing is shown to be stable against Zeeman interactions,
but leads to delocalized zero-energy Majorana modes which extend through the vortex.
In contrast, the finite-energy vortex modes remain localized at the vortex ends
even when the pairing is of orbital-triplet form. Phenomenologically, this manifests
as an observed disappearance of zero-bias peaks within the cores of topological
vortices upon an increase of the applied magnetic field. The presence of magnetic
impurities in FeTe(1−x)Sex, which are attracted to the vortices, would lead to
such Zeeman-induced delocalization of Majorana modes in a fraction of vortices
that capture a large enough number of magnetic impurities. Our results provide
an explanation for the dichotomy between topological and nontopological vortices
recently observed in FeTe(1−x)Sex.
article_number: '020504'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Areg
full_name: Ghazaryan, Areg
id: 4AF46FD6-F248-11E8-B48F-1D18A9856A87
last_name: Ghazaryan
orcid: 0000-0001-9666-3543
- first_name: P. L.S.
full_name: Lopes, P. L.S.
last_name: Lopes
- first_name: Pavan
full_name: Hosur, Pavan
last_name: Hosur
- first_name: Matthew J.
full_name: Gilbert, Matthew J.
last_name: Gilbert
- first_name: Pouyan
full_name: Ghaemi, Pouyan
last_name: Ghaemi
citation:
ama: Ghazaryan A, Lopes PLS, Hosur P, Gilbert MJ, Ghaemi P. Effect of Zeeman coupling
on the Majorana vortex modes in iron-based topological superconductors. Physical
Review B. 2020;101(2). doi:10.1103/PhysRevB.101.020504
apa: Ghazaryan, A., Lopes, P. L. S., Hosur, P., Gilbert, M. J., & Ghaemi, P.
(2020). Effect of Zeeman coupling on the Majorana vortex modes in iron-based topological
superconductors. Physical Review B. American Physical Society. https://doi.org/10.1103/PhysRevB.101.020504
chicago: Ghazaryan, Areg, P. L.S. Lopes, Pavan Hosur, Matthew J. Gilbert, and Pouyan
Ghaemi. “Effect of Zeeman Coupling on the Majorana Vortex Modes in Iron-Based
Topological Superconductors.” Physical Review B. American Physical Society,
2020. https://doi.org/10.1103/PhysRevB.101.020504.
ieee: A. Ghazaryan, P. L. S. Lopes, P. Hosur, M. J. Gilbert, and P. Ghaemi, “Effect
of Zeeman coupling on the Majorana vortex modes in iron-based topological superconductors,”
Physical Review B, vol. 101, no. 2. American Physical Society, 2020.
ista: Ghazaryan A, Lopes PLS, Hosur P, Gilbert MJ, Ghaemi P. 2020. Effect of Zeeman
coupling on the Majorana vortex modes in iron-based topological superconductors.
Physical Review B. 101(2), 020504.
mla: Ghazaryan, Areg, et al. “Effect of Zeeman Coupling on the Majorana Vortex Modes
in Iron-Based Topological Superconductors.” Physical Review B, vol. 101,
no. 2, 020504, American Physical Society, 2020, doi:10.1103/PhysRevB.101.020504.
short: A. Ghazaryan, P.L.S. Lopes, P. Hosur, M.J. Gilbert, P. Ghaemi, Physical Review
B 101 (2020).
date_created: 2020-02-02T23:01:01Z
date_published: 2020-01-13T00:00:00Z
date_updated: 2025-07-10T11:54:37Z
day: '13'
department:
- _id: MiLe
doi: 10.1103/PhysRevB.101.020504
external_id:
arxiv:
- '1907.02077'
isi:
- '000506843500001'
intvolume: ' 101'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1907.02077
month: '01'
oa: 1
oa_version: Preprint
publication: Physical Review B
publication_identifier:
eissn:
- 2469-9969
issn:
- 2469-9950
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Effect of Zeeman coupling on the Majorana vortex modes in iron-based topological
superconductors
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 101
year: '2020'
...
---
_id: '7464'
abstract:
- lang: eng
text: 'Retrovirus assembly is driven by the multidomain structural protein Gag.
Interactions between the capsid domains (CA) of Gag result in Gag multimerization,
leading to an immature virus particle that is formed by a protein lattice based
on dimeric, trimeric, and hexameric protein contacts. Among retroviruses the inter-
and intra-hexamer contacts differ, especially in the N-terminal sub-domain of
CA (CANTD). For HIV-1 the cellular molecule inositol hexakisphosphate (IP6) interacts
with and stabilizes the immature hexamer, and is required for production of infectious
virus particles. We have used in vitro assembly, cryo-electron tomography and
subtomogram averaging, atomistic molecular dynamics simulations and mutational
analyses to study the HIV-related lentivirus equine infectious anemia virus (EIAV).
In particular, we sought to understand the structural conservation of the immature
lentivirus lattice and the role of IP6 in EIAV assembly. Similar to HIV-1, IP6
strongly promoted in vitro assembly of EIAV Gag proteins into virus-like particles
(VLPs), which took three morphologically highly distinct forms: narrow tubes,
wide tubes, and spheres. Structural characterization of these VLPs to sub-4Å resolution
unexpectedly showed that all three morphologies are based on an immature lattice
with preserved key structural components, highlighting the structural versatility
of CA to form immature assemblies. A direct comparison between EIAV and HIV revealed
that both lentiviruses maintain similar immature interfaces, which are established
by both conserved and non-conserved residues. In both EIAV and HIV-1, IP6 regulates
immature assembly via conserved lysine residues within the CACTD and SP. Lastly,
we demonstrate that IP6 stimulates in vitro assembly of immature particles of
several other retroviruses in the lentivirus genus, suggesting a conserved role
for IP6 in lentiviral assembly.'
acknowledged_ssus:
- _id: ScienComp
article_number: e1008277
article_processing_charge: No
article_type: original
author:
- first_name: Robert A.
full_name: Dick, Robert A.
last_name: Dick
- first_name: Chaoyi
full_name: Xu, Chaoyi
last_name: Xu
- first_name: Dustin R.
full_name: Morado, Dustin R.
last_name: Morado
- first_name: Vladyslav
full_name: Kravchuk, Vladyslav
id: 4D62F2A6-F248-11E8-B48F-1D18A9856A87
last_name: Kravchuk
orcid: 0000-0001-9523-9089
- first_name: Clifton L.
full_name: Ricana, Clifton L.
last_name: Ricana
- first_name: Terri D.
full_name: Lyddon, Terri D.
last_name: Lyddon
- first_name: Arianna M.
full_name: Broad, Arianna M.
last_name: Broad
- first_name: J. Ryan
full_name: Feathers, J. Ryan
last_name: Feathers
- first_name: Marc C.
full_name: Johnson, Marc C.
last_name: Johnson
- first_name: Volker M.
full_name: Vogt, Volker M.
last_name: Vogt
- first_name: Juan R.
full_name: Perilla, Juan R.
last_name: Perilla
- first_name: John A. G.
full_name: Briggs, John A. G.
last_name: Briggs
- first_name: Florian KM
full_name: Schur, Florian KM
id: 48AD8942-F248-11E8-B48F-1D18A9856A87
last_name: Schur
orcid: 0000-0003-4790-8078
citation:
ama: Dick RA, Xu C, Morado DR, et al. Structures of immature EIAV Gag lattices reveal
a conserved role for IP6 in lentivirus assembly. PLOS Pathogens. 2020;16(1).
doi:10.1371/journal.ppat.1008277
apa: Dick, R. A., Xu, C., Morado, D. R., Kravchuk, V., Ricana, C. L., Lyddon, T.
D., … Schur, F. K. (2020). Structures of immature EIAV Gag lattices reveal a conserved
role for IP6 in lentivirus assembly. PLOS Pathogens. Public Library of
Science. https://doi.org/10.1371/journal.ppat.1008277
chicago: Dick, Robert A., Chaoyi Xu, Dustin R. Morado, Vladyslav Kravchuk, Clifton
L. Ricana, Terri D. Lyddon, Arianna M. Broad, et al. “Structures of Immature EIAV
Gag Lattices Reveal a Conserved Role for IP6 in Lentivirus Assembly.” PLOS
Pathogens. Public Library of Science, 2020. https://doi.org/10.1371/journal.ppat.1008277.
ieee: R. A. Dick et al., “Structures of immature EIAV Gag lattices reveal
a conserved role for IP6 in lentivirus assembly,” PLOS Pathogens, vol.
16, no. 1. Public Library of Science, 2020.
ista: Dick RA, Xu C, Morado DR, Kravchuk V, Ricana CL, Lyddon TD, Broad AM, Feathers
JR, Johnson MC, Vogt VM, Perilla JR, Briggs JAG, Schur FK. 2020. Structures of
immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly.
PLOS Pathogens. 16(1), e1008277.
mla: Dick, Robert A., et al. “Structures of Immature EIAV Gag Lattices Reveal a
Conserved Role for IP6 in Lentivirus Assembly.” PLOS Pathogens, vol. 16,
no. 1, e1008277, Public Library of Science, 2020, doi:10.1371/journal.ppat.1008277.
short: R.A. Dick, C. Xu, D.R. Morado, V. Kravchuk, C.L. Ricana, T.D. Lyddon, A.M.
Broad, J.R. Feathers, M.C. Johnson, V.M. Vogt, J.R. Perilla, J.A.G. Briggs, F.K.
Schur, PLOS Pathogens 16 (2020).
corr_author: '1'
date_created: 2020-02-06T18:47:17Z
date_published: 2020-01-27T00:00:00Z
date_updated: 2025-04-15T08:24:51Z
day: '27'
ddc:
- '570'
department:
- _id: FlSc
doi: 10.1371/journal.ppat.1008277
external_id:
isi:
- '000510746400010'
pmid:
- '31986188'
file:
- access_level: open_access
checksum: a297f54d1fef0efe4789ca00f37f241e
content_type: application/pdf
creator: dernst
date_created: 2020-02-11T10:07:28Z
date_updated: 2020-07-14T12:47:59Z
file_id: '7484'
file_name: 2020_PLOSPatho_Dick.pdf
file_size: 4551246
relation: main_file
file_date_updated: 2020-07-14T12:47:59Z
has_accepted_license: '1'
intvolume: ' 16'
isi: 1
issue: '1'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '01'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 26736D6A-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P31445
name: Structural conservation and diversity in retroviral capsid
publication: PLOS Pathogens
publication_identifier:
issn:
- 1553-7374
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
related_material:
record:
- id: '9723'
relation: research_data
status: deleted
scopus_import: '1'
status: public
title: Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in
lentivirus assembly
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2020'
...
---
_id: '7467'
abstract:
- lang: eng
text: Nanomaterials produced from the bottom-up assembly of nanocrystals may incorporate
∼1020–1021 cm–3 not fully coordinated surface atoms, i.e., ∼1020–1021 cm–3 potential
donor or acceptor states that can strongly affect transport properties. Therefore,
to exploit the full potential of nanocrystal building blocks to produce functional
nanomaterials and thin films, a proper control of their surface chemistry is required.
Here, we analyze how the ligand stripping procedure influences the charge and
heat transport properties of sintered PbSe nanomaterials produced from the bottom-up
assembly of colloidal PbSe nanocrystals. First, we show that the removal of the
native organic ligands by thermal decomposition in an inert atmosphere leaves
relatively large amounts of carbon at the crystal interfaces. This carbon blocks
crystal growth during consolidation and at the same time hampers charge and heat
transport through the final nanomaterial. Second, we demonstrate that, by stripping
ligands from the nanocrystal surface before consolidation, nanomaterials with
larger crystal domains, lower porosity, and higher charge carrier concentrations
are obtained, thus resulting in nanomaterials with higher electrical and thermal
conductivities. In addition, the ligand displacement leaves the nanocrystal surface
unprotected, facilitating oxidation and chalcogen evaporation. The influence of
the ligand displacement on the nanomaterial charge transport properties is rationalized
here using a two-band model based on the standard Boltzmann transport equation
with the relaxation time approximation. Finally, we present an application of
the produced functional nanomaterials by modeling, fabricating, and testing a
simple PbSe-based thermoelectric device with a ring geometry.
acknowledgement: This work was supported by the Spanish Ministerio de Economía y Competitividad
through the project SEHTOP (ENE2016-77798-C4-3-R) and the Generalitat de Catalunya
through the project 2017SGR1246. D.C. acknowledges support from Universidad Nacional
de Colombia. Y.L. acknowledges funding from the European Union’s Horizon 2020 research
and innovation programme under the Marie Sklodowska-Curie grant agreement no. 754411.
M.I. acknowledges financial support from IST Austria.
article_processing_charge: No
article_type: original
author:
- first_name: Doris
full_name: Cadavid, Doris
last_name: Cadavid
- first_name: Silvia
full_name: Ortega, Silvia
last_name: Ortega
- first_name: Sergio
full_name: Illera, Sergio
last_name: Illera
- first_name: Yu
full_name: Liu, Yu
id: 2A70014E-F248-11E8-B48F-1D18A9856A87
last_name: Liu
orcid: 0000-0001-7313-6740
- first_name: Maria
full_name: Ibáñez, Maria
id: 43C61214-F248-11E8-B48F-1D18A9856A87
last_name: Ibáñez
orcid: 0000-0001-5013-2843
- first_name: Alexey
full_name: Shavel, Alexey
last_name: Shavel
- first_name: Yu
full_name: Zhang, Yu
last_name: Zhang
- first_name: Mengyao
full_name: Li, Mengyao
last_name: Li
- first_name: Antonio M.
full_name: López, Antonio M.
last_name: López
- first_name: Germán
full_name: Noriega, Germán
last_name: Noriega
- first_name: Oscar Juan
full_name: Durá, Oscar Juan
last_name: Durá
- first_name: M. A.
full_name: López De La Torre, M. A.
last_name: López De La Torre
- first_name: Joan Daniel
full_name: Prades, Joan Daniel
last_name: Prades
- first_name: Andreu
full_name: Cabot, Andreu
last_name: Cabot
citation:
ama: Cadavid D, Ortega S, Illera S, et al. Influence of the ligand stripping on
the transport properties of nanoparticle-based PbSe nanomaterials. ACS Applied
Energy Materials. 2020;3(3):2120-2129. doi:10.1021/acsaem.9b02137
apa: Cadavid, D., Ortega, S., Illera, S., Liu, Y., Ibáñez, M., Shavel, A., … Cabot,
A. (2020). Influence of the ligand stripping on the transport properties of nanoparticle-based
PbSe nanomaterials. ACS Applied Energy Materials. American Chemical Society.
https://doi.org/10.1021/acsaem.9b02137
chicago: Cadavid, Doris, Silvia Ortega, Sergio Illera, Yu Liu, Maria Ibáñez, Alexey
Shavel, Yu Zhang, et al. “Influence of the Ligand Stripping on the Transport Properties
of Nanoparticle-Based PbSe Nanomaterials.” ACS Applied Energy Materials.
American Chemical Society, 2020. https://doi.org/10.1021/acsaem.9b02137.
ieee: D. Cadavid et al., “Influence of the ligand stripping on the transport
properties of nanoparticle-based PbSe nanomaterials,” ACS Applied Energy Materials,
vol. 3, no. 3. American Chemical Society, pp. 2120–2129, 2020.
ista: Cadavid D, Ortega S, Illera S, Liu Y, Ibáñez M, Shavel A, Zhang Y, Li M, López
AM, Noriega G, Durá OJ, López De La Torre MA, Prades JD, Cabot A. 2020. Influence
of the ligand stripping on the transport properties of nanoparticle-based PbSe
nanomaterials. ACS Applied Energy Materials. 3(3), 2120–2129.
mla: Cadavid, Doris, et al. “Influence of the Ligand Stripping on the Transport
Properties of Nanoparticle-Based PbSe Nanomaterials.” ACS Applied Energy Materials,
vol. 3, no. 3, American Chemical Society, 2020, pp. 2120–29, doi:10.1021/acsaem.9b02137.
short: D. Cadavid, S. Ortega, S. Illera, Y. Liu, M. Ibáñez, A. Shavel, Y. Zhang,
M. Li, A.M. López, G. Noriega, O.J. Durá, M.A. López De La Torre, J.D. Prades,
A. Cabot, ACS Applied Energy Materials 3 (2020) 2120–2129.
date_created: 2020-02-09T23:00:52Z
date_published: 2020-03-01T00:00:00Z
date_updated: 2025-04-14T07:44:03Z
day: '01'
ddc:
- '540'
department:
- _id: MaIb
doi: 10.1021/acsaem.9b02137
ec_funded: 1
external_id:
isi:
- '000526598300012'
file:
- access_level: open_access
checksum: f23be731a766a480c77c962c1380315c
content_type: application/pdf
creator: dernst
date_created: 2022-08-23T08:34:17Z
date_updated: 2022-08-23T08:34:17Z
file_id: '11942'
file_name: 2020_ACSAppliedEnergyMat_Cadavid.pdf
file_size: 6423548
relation: main_file
success: 1
file_date_updated: 2022-08-23T08:34:17Z
has_accepted_license: '1'
intvolume: ' 3'
isi: 1
issue: '3'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Submitted Version
page: 2120-2129
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
publication: ACS Applied Energy Materials
publication_identifier:
eissn:
- 2574-0962
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Influence of the ligand stripping on the transport properties of nanoparticle-based
PbSe nanomaterials
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 3
year: '2020'
...
---
_id: '7472'
abstract:
- lang: eng
text: Temporally organized reactivation of experiences during awake immobility periods
is thought to underlie cognitive processes like planning and evaluation. While
replay of trajectories is well established for the hippocampus, it is unclear
whether the medial prefrontal cortex (mPFC) can reactivate sequential behavioral
experiences in the awake state to support task execution. We simultaneously recorded
from hippocampal and mPFC principal neurons in rats performing a mPFC-dependent
rule-switching task on a plus maze. We found that mPFC neuronal activity encoded
relative positions between the start and goal. During awake immobility periods,
the mPFC replayed temporally organized sequences of these generalized positions,
resembling entire spatial trajectories. The occurrence of mPFC trajectory replay
positively correlated with rule-switching performance. However, hippocampal and
mPFC trajectory replay occurred independently, indicating different functions.
These results demonstrate that the mPFC can replay ordered activity patterns representing
generalized locations and suggest that mPFC replay might have a role in flexible
behavior.
acknowledged_ssus:
- _id: M-Shop
acknowledgement: We thank Todor Asenov and Thomas Menner from the Machine Shop for
the drive design and production, Hugo Malagon-Vina for assistance in maze automatization,
Jago Wallenschus for taking the images of the histology, and Federico Stella and
Juan Felipe Ramirez-Villegas for comments on an earlier version of the manuscript.
This work was supported by the EU-FP7 MC-ITN IN-SENS (grant 607616 ).
article_processing_charge: No
article_type: original
author:
- first_name: Karola
full_name: Käfer, Karola
id: 2DAA49AA-F248-11E8-B48F-1D18A9856A87
last_name: Käfer
- first_name: Michele
full_name: Nardin, Michele
id: 30BD0376-F248-11E8-B48F-1D18A9856A87
last_name: Nardin
orcid: 0000-0001-8849-6570
- first_name: Karel
full_name: Blahna, Karel
id: 3EA859AE-F248-11E8-B48F-1D18A9856A87
last_name: Blahna
- first_name: Jozsef L
full_name: Csicsvari, Jozsef L
id: 3FA14672-F248-11E8-B48F-1D18A9856A87
last_name: Csicsvari
orcid: 0000-0002-5193-4036
citation:
ama: Käfer K, Nardin M, Blahna K, Csicsvari JL. Replay of behavioral sequences in
the medial prefrontal cortex during rule switching. Neuron. 2020;106(1):P154-165.e6.
doi:10.1016/j.neuron.2020.01.015
apa: Käfer, K., Nardin, M., Blahna, K., & Csicsvari, J. L. (2020). Replay of
behavioral sequences in the medial prefrontal cortex during rule switching. Neuron.
Elsevier. https://doi.org/10.1016/j.neuron.2020.01.015
chicago: Käfer, Karola, Michele Nardin, Karel Blahna, and Jozsef L Csicsvari. “Replay
of Behavioral Sequences in the Medial Prefrontal Cortex during Rule Switching.”
Neuron. Elsevier, 2020. https://doi.org/10.1016/j.neuron.2020.01.015.
ieee: K. Käfer, M. Nardin, K. Blahna, and J. L. Csicsvari, “Replay of behavioral
sequences in the medial prefrontal cortex during rule switching,” Neuron,
vol. 106, no. 1. Elsevier, p. P154–165.e6, 2020.
ista: Käfer K, Nardin M, Blahna K, Csicsvari JL. 2020. Replay of behavioral sequences
in the medial prefrontal cortex during rule switching. Neuron. 106(1), P154–165.e6.
mla: Käfer, Karola, et al. “Replay of Behavioral Sequences in the Medial Prefrontal
Cortex during Rule Switching.” Neuron, vol. 106, no. 1, Elsevier, 2020,
p. P154–165.e6, doi:10.1016/j.neuron.2020.01.015.
short: K. Käfer, M. Nardin, K. Blahna, J.L. Csicsvari, Neuron 106 (2020) P154–165.e6.
corr_author: '1'
date_created: 2020-02-10T15:45:48Z
date_published: 2020-04-08T00:00:00Z
date_updated: 2025-04-15T06:48:21Z
day: '08'
department:
- _id: JoCs
doi: 10.1016/j.neuron.2020.01.015
ec_funded: 1
external_id:
isi:
- '000525319300016'
pmid:
- '32032512'
intvolume: ' 106'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.neuron.2020.01.015
month: '04'
oa: 1
oa_version: Published Version
page: P154-165.e6
pmid: 1
project:
- _id: 257BBB4C-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '607616'
name: inter-and intracellular signalling in schizophrenia
publication: Neuron
publication_identifier:
issn:
- 0896-6273
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
link:
- description: News on IST Homepage
relation: press_release
url: https://ist.ac.at/en/news/this-brain-area-helps-us-decide/
scopus_import: '1'
status: public
title: Replay of behavioral sequences in the medial prefrontal cortex during rule
switching
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 106
year: '2020'
...
---
_id: '7474'
abstract:
- lang: eng
text: This booklet is a collection of abstracts presented at the AHPC conference.
article_processing_charge: No
citation:
ama: 'Schlögl A, Kiss J, Elefante S, eds. Austrian High-Performance-Computing
Meeting (AHPC2020). Klosterneuburg, Austria: IST Austria; 2020. doi:10.15479/AT:ISTA:7474'
apa: 'Schlögl, A., Kiss, J., & Elefante, S. (Eds.). (2020). Austrian High-Performance-Computing
meeting (AHPC2020). Presented at the AHPC: Austrian High-Performance-Computing
Meeting, Klosterneuburg, Austria: IST Austria. https://doi.org/10.15479/AT:ISTA:7474'
chicago: 'Schlögl, Alois, Janos Kiss, and Stefano Elefante, eds. Austrian High-Performance-Computing
Meeting (AHPC2020). Klosterneuburg, Austria: IST Austria, 2020. https://doi.org/10.15479/AT:ISTA:7474.'
ieee: 'A. Schlögl, J. Kiss, and S. Elefante, Eds., Austrian High-Performance-Computing
meeting (AHPC2020). Klosterneuburg, Austria: IST Austria, 2020.'
ista: 'Schlögl A, Kiss J, Elefante S eds. 2020. Austrian High-Performance-Computing
meeting (AHPC2020), Klosterneuburg, Austria: IST Austria, 72p.'
mla: Schlögl, Alois, et al., editors. Austrian High-Performance-Computing Meeting
(AHPC2020). IST Austria, 2020, doi:10.15479/AT:ISTA:7474.
short: A. Schlögl, J. Kiss, S. Elefante, eds., Austrian High-Performance-Computing
Meeting (AHPC2020), IST Austria, Klosterneuburg, Austria, 2020.
conference:
end_date: 2020-02-21
location: Klosterneuburg, Austria
name: 'AHPC: Austrian High-Performance-Computing Meeting'
start_date: 2020-02-19
date_created: 2020-02-11T07:59:04Z
date_published: 2020-02-19T00:00:00Z
date_updated: 2023-05-16T07:48:28Z
day: '19'
ddc:
- '000'
department:
- _id: ScienComp
doi: 10.15479/AT:ISTA:7474
editor:
- first_name: Alois
full_name: Schlögl, Alois
id: 45BF87EE-F248-11E8-B48F-1D18A9856A87
last_name: Schlögl
orcid: 0000-0002-5621-8100
- first_name: Janos
full_name: Kiss, Janos
id: 3D3A06F8-F248-11E8-B48F-1D18A9856A87
last_name: Kiss
- first_name: Stefano
full_name: Elefante, Stefano
id: 490F40CE-F248-11E8-B48F-1D18A9856A87
last_name: Elefante
file:
- access_level: open_access
checksum: 49798edb9e57bbd6be18362d1d7b18a9
content_type: application/pdf
creator: schloegl
date_created: 2020-02-19T06:53:38Z
date_updated: 2020-07-14T12:47:59Z
file_id: '7504'
file_name: BOOKLET_AHPC2020.final.pdf
file_size: 90899507
relation: main_file
file_date_updated: 2020-07-14T12:47:59Z
has_accepted_license: '1'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: '72'
place: Klosterneuburg, Austria
publication_identifier:
isbn:
- 978-3-99078-004-6
publication_status: published
publisher: IST Austria
quality_controlled: '1'
status: public
title: Austrian High-Performance-Computing meeting (AHPC2020)
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: book_editor
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '7477'
abstract:
- lang: eng
text: We present conductance-matrix measurements of a three-terminal superconductor-semiconductor
hybrid device consisting of two normal leads and one superconducting lead. Using
a symmetry decomposition of the conductance, we find that antisymmetric components
of pairs of local and nonlocal conductances qualitatively match at energies below
the superconducting gap, and we compare this finding with symmetry relations based
on a noninteracting scattering matrix approach. Further, the local charge character
of Andreev bound states is extracted from the symmetry-decomposed conductance
data and is found to be similar at both ends of the device and tunable with gate
voltage. Finally, we measure the conductance matrix as a function of magnetic
field and identify correlated splittings in low-energy features, demonstrating
how conductance-matrix measurements can complement traditional single-probe measurements
in the search for Majorana zero modes.
article_number: '036802'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: G. C.
full_name: Ménard, G. C.
last_name: Ménard
- first_name: G. L. R.
full_name: Anselmetti, G. L. R.
last_name: Anselmetti
- first_name: E. A.
full_name: Martinez, E. A.
last_name: Martinez
- first_name: D.
full_name: Puglia, D.
last_name: Puglia
- first_name: F. K.
full_name: Malinowski, F. K.
last_name: Malinowski
- first_name: J. S.
full_name: Lee, J. S.
last_name: Lee
- first_name: S.
full_name: Choi, S.
last_name: Choi
- first_name: M.
full_name: Pendharkar, M.
last_name: Pendharkar
- first_name: C. J.
full_name: Palmstrøm, C. J.
last_name: Palmstrøm
- first_name: K.
full_name: Flensberg, K.
last_name: Flensberg
- first_name: C. M.
full_name: Marcus, C. M.
last_name: Marcus
- first_name: L.
full_name: Casparis, L.
last_name: Casparis
- first_name: Andrew P
full_name: Higginbotham, Andrew P
id: 4AD6785A-F248-11E8-B48F-1D18A9856A87
last_name: Higginbotham
orcid: 0000-0003-2607-2363
citation:
ama: Ménard GC, Anselmetti GLR, Martinez EA, et al. Conductance-matrix symmetries
of a three-terminal hybrid device. Physical Review Letters. 2020;124(3).
doi:10.1103/physrevlett.124.036802
apa: Ménard, G. C., Anselmetti, G. L. R., Martinez, E. A., Puglia, D., Malinowski,
F. K., Lee, J. S., … Higginbotham, A. P. (2020). Conductance-matrix symmetries
of a three-terminal hybrid device. Physical Review Letters. APS. https://doi.org/10.1103/physrevlett.124.036802
chicago: Ménard, G. C., G. L. R. Anselmetti, E. A. Martinez, D. Puglia, F. K. Malinowski,
J. S. Lee, S. Choi, et al. “Conductance-Matrix Symmetries of a Three-Terminal
Hybrid Device.” Physical Review Letters. APS, 2020. https://doi.org/10.1103/physrevlett.124.036802.
ieee: G. C. Ménard et al., “Conductance-matrix symmetries of a three-terminal
hybrid device,” Physical Review Letters, vol. 124, no. 3. APS, 2020.
ista: Ménard GC, Anselmetti GLR, Martinez EA, Puglia D, Malinowski FK, Lee JS, Choi
S, Pendharkar M, Palmstrøm CJ, Flensberg K, Marcus CM, Casparis L, Higginbotham
AP. 2020. Conductance-matrix symmetries of a three-terminal hybrid device. Physical
Review Letters. 124(3), 036802.
mla: Ménard, G. C., et al. “Conductance-Matrix Symmetries of a Three-Terminal Hybrid
Device.” Physical Review Letters, vol. 124, no. 3, 036802, APS, 2020, doi:10.1103/physrevlett.124.036802.
short: G.C. Ménard, G.L.R. Anselmetti, E.A. Martinez, D. Puglia, F.K. Malinowski,
J.S. Lee, S. Choi, M. Pendharkar, C.J. Palmstrøm, K. Flensberg, C.M. Marcus, L.
Casparis, A.P. Higginbotham, Physical Review Letters 124 (2020).
date_created: 2020-02-11T08:50:02Z
date_published: 2020-01-24T00:00:00Z
date_updated: 2021-01-12T08:13:48Z
day: '24'
doi: 10.1103/physrevlett.124.036802
extern: '1'
external_id:
arxiv:
- '1905.05505'
intvolume: ' 124'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1905.05505
month: '01'
oa: 1
oa_version: Preprint
publication: Physical Review Letters
publication_identifier:
issn:
- 0031-9007
- 1079-7114
publication_status: published
publisher: APS
quality_controlled: '1'
status: public
title: Conductance-matrix symmetries of a three-terminal hybrid device
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 124
year: '2020'
...
---
_id: '7478'
abstract:
- lang: eng
text: Two-terminal conductance spectroscopy of superconducting devices is a common
tool for probing Andreev and Majorana bound states. Here, we study theoretically
a three-terminal setup, with two normal leads coupled to a grounded superconducting
terminal. Using a single-electron scattering matrix, we derive the subgap conductance
matrix for the normal leads and discuss its symmetries. In particular, we show
that the local and the nonlocal elements of the conductance matrix have pairwise
identical antisymmetric components. Moreover, we find that the nonlocal elements
are directly related to the local BCS charges of the bound states close to the
normal probes and we show how the BCS charge of overlapping Majorana bound states
can be extracted from experiments.
article_number: '036801'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Jeroen
full_name: Danon, Jeroen
last_name: Danon
- first_name: Anna Birk
full_name: Hellenes, Anna Birk
last_name: Hellenes
- first_name: Esben Bork
full_name: Hansen, Esben Bork
last_name: Hansen
- first_name: Lucas
full_name: Casparis, Lucas
last_name: Casparis
- first_name: Andrew P
full_name: Higginbotham, Andrew P
id: 4AD6785A-F248-11E8-B48F-1D18A9856A87
last_name: Higginbotham
orcid: 0000-0003-2607-2363
- first_name: Karsten
full_name: Flensberg, Karsten
last_name: Flensberg
citation:
ama: 'Danon J, Hellenes AB, Hansen EB, Casparis L, Higginbotham AP, Flensberg K.
Nonlocal conductance spectroscopy of Andreev bound states: Symmetry relations
and BCS charges. Physical Review Letters. 2020;124(3). doi:10.1103/physrevlett.124.036801'
apa: 'Danon, J., Hellenes, A. B., Hansen, E. B., Casparis, L., Higginbotham, A.
P., & Flensberg, K. (2020). Nonlocal conductance spectroscopy of Andreev bound
states: Symmetry relations and BCS charges. Physical Review Letters. APS.
https://doi.org/10.1103/physrevlett.124.036801'
chicago: 'Danon, Jeroen, Anna Birk Hellenes, Esben Bork Hansen, Lucas Casparis,
Andrew P Higginbotham, and Karsten Flensberg. “Nonlocal Conductance Spectroscopy
of Andreev Bound States: Symmetry Relations and BCS Charges.” Physical Review
Letters. APS, 2020. https://doi.org/10.1103/physrevlett.124.036801.'
ieee: 'J. Danon, A. B. Hellenes, E. B. Hansen, L. Casparis, A. P. Higginbotham,
and K. Flensberg, “Nonlocal conductance spectroscopy of Andreev bound states:
Symmetry relations and BCS charges,” Physical Review Letters, vol. 124,
no. 3. APS, 2020.'
ista: 'Danon J, Hellenes AB, Hansen EB, Casparis L, Higginbotham AP, Flensberg K.
2020. Nonlocal conductance spectroscopy of Andreev bound states: Symmetry relations
and BCS charges. Physical Review Letters. 124(3), 036801.'
mla: 'Danon, Jeroen, et al. “Nonlocal Conductance Spectroscopy of Andreev Bound
States: Symmetry Relations and BCS Charges.” Physical Review Letters, vol.
124, no. 3, 036801, APS, 2020, doi:10.1103/physrevlett.124.036801.'
short: J. Danon, A.B. Hellenes, E.B. Hansen, L. Casparis, A.P. Higginbotham, K.
Flensberg, Physical Review Letters 124 (2020).
date_created: 2020-02-11T08:55:40Z
date_published: 2020-01-24T00:00:00Z
date_updated: 2021-01-12T08:13:48Z
day: '24'
doi: 10.1103/physrevlett.124.036801
extern: '1'
external_id:
arxiv:
- '1905.05438'
intvolume: ' 124'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1905.05438
month: '01'
oa: 1
oa_version: Preprint
publication: Physical Review Letters
publication_identifier:
issn:
- 0031-9007
- 1079-7114
publication_status: published
publisher: APS
quality_controlled: '1'
status: public
title: 'Nonlocal conductance spectroscopy of Andreev bound states: Symmetry relations
and BCS charges'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 124
year: '2020'
...
---
_id: '7488'
abstract:
- lang: eng
text: Characteristic or classic phenotype of Cornelia de Lange syndrome (CdLS) is
associated with a recognisable facial pattern. However, the heterogeneity in causal
genes and the presence of overlapping syndromes have made it increasingly difficult
to diagnose only by clinical features. DeepGestalt technology, and its app Face2Gene,
is having a growing impact on the diagnosis and management of genetic diseases
by analysing the features of affected individuals. Here, we performed a phenotypic
study on a cohort of 49 individuals harbouring causative variants in known CdLS
genes in order to evaluate Face2Gene utility and sensitivity in the clinical diagnosis
of CdLS. Based on the profile images of patients, a diagnosis of CdLS was within
the top five predicted syndromes for 97.9% of our cases and even listed as first
prediction for 83.7%. The age of patients did not seem to affect the prediction
accuracy, whereas our results indicate a correlation between the clinical score
and affected genes. Furthermore, each gene presents a different pattern recognition
that may be used to develop new neural networks with the goal of separating different
genetic subtypes in CdLS. Overall, we conclude that computer-assisted image analysis
based on deep learning could support the clinical diagnosis of CdLS.
article_number: '1042'
article_processing_charge: No
article_type: original
author:
- first_name: Ana
full_name: Latorre-Pellicer, Ana
last_name: Latorre-Pellicer
- first_name: Ángela
full_name: Ascaso, Ángela
last_name: Ascaso
- first_name: Laura
full_name: Trujillano, Laura
last_name: Trujillano
- first_name: Marta
full_name: Gil-Salvador, Marta
last_name: Gil-Salvador
- first_name: Maria
full_name: Arnedo, Maria
last_name: Arnedo
- first_name: Cristina
full_name: Lucia-Campos, Cristina
last_name: Lucia-Campos
- first_name: Rebeca
full_name: Antoñanzas-Pérez, Rebeca
last_name: Antoñanzas-Pérez
- first_name: Iñigo
full_name: Marcos-Alcalde, Iñigo
last_name: Marcos-Alcalde
- first_name: Ilaria
full_name: Parenti, Ilaria
id: D93538B0-5B71-11E9-AC62-02EBE5697425
last_name: Parenti
- first_name: Gloria
full_name: Bueno-Lozano, Gloria
last_name: Bueno-Lozano
- first_name: Antonio
full_name: Musio, Antonio
last_name: Musio
- first_name: Beatriz
full_name: Puisac, Beatriz
last_name: Puisac
- first_name: Frank J.
full_name: Kaiser, Frank J.
last_name: Kaiser
- first_name: Feliciano J.
full_name: Ramos, Feliciano J.
last_name: Ramos
- first_name: Paulino
full_name: Gómez-Puertas, Paulino
last_name: Gómez-Puertas
- first_name: Juan
full_name: Pié, Juan
last_name: Pié
citation:
ama: Latorre-Pellicer A, Ascaso Á, Trujillano L, et al. Evaluating Face2Gene as
a tool to identify Cornelia de Lange syndrome by facial phenotypes. International
Journal of Molecular Sciences. 2020;21(3). doi:10.3390/ijms21031042
apa: Latorre-Pellicer, A., Ascaso, Á., Trujillano, L., Gil-Salvador, M., Arnedo,
M., Lucia-Campos, C., … Pié, J. (2020). Evaluating Face2Gene as a tool to identify
Cornelia de Lange syndrome by facial phenotypes. International Journal of Molecular
Sciences. MDPI. https://doi.org/10.3390/ijms21031042
chicago: Latorre-Pellicer, Ana, Ángela Ascaso, Laura Trujillano, Marta Gil-Salvador,
Maria Arnedo, Cristina Lucia-Campos, Rebeca Antoñanzas-Pérez, et al. “Evaluating
Face2Gene as a Tool to Identify Cornelia de Lange Syndrome by Facial Phenotypes.”
International Journal of Molecular Sciences. MDPI, 2020. https://doi.org/10.3390/ijms21031042.
ieee: A. Latorre-Pellicer et al., “Evaluating Face2Gene as a tool to identify
Cornelia de Lange syndrome by facial phenotypes,” International Journal of
Molecular Sciences, vol. 21, no. 3. MDPI, 2020.
ista: Latorre-Pellicer A, Ascaso Á, Trujillano L, Gil-Salvador M, Arnedo M, Lucia-Campos
C, Antoñanzas-Pérez R, Marcos-Alcalde I, Parenti I, Bueno-Lozano G, Musio A, Puisac
B, Kaiser FJ, Ramos FJ, Gómez-Puertas P, Pié J. 2020. Evaluating Face2Gene as
a tool to identify Cornelia de Lange syndrome by facial phenotypes. International
Journal of Molecular Sciences. 21(3), 1042.
mla: Latorre-Pellicer, Ana, et al. “Evaluating Face2Gene as a Tool to Identify Cornelia
de Lange Syndrome by Facial Phenotypes.” International Journal of Molecular
Sciences, vol. 21, no. 3, 1042, MDPI, 2020, doi:10.3390/ijms21031042.
short: A. Latorre-Pellicer, Á. Ascaso, L. Trujillano, M. Gil-Salvador, M. Arnedo,
C. Lucia-Campos, R. Antoñanzas-Pérez, I. Marcos-Alcalde, I. Parenti, G. Bueno-Lozano,
A. Musio, B. Puisac, F.J. Kaiser, F.J. Ramos, P. Gómez-Puertas, J. Pié, International
Journal of Molecular Sciences 21 (2020).
corr_author: '1'
date_created: 2020-02-16T23:00:49Z
date_published: 2020-02-04T00:00:00Z
date_updated: 2025-07-10T11:54:41Z
day: '04'
ddc:
- '570'
department:
- _id: GaNo
doi: 10.3390/ijms21031042
external_id:
isi:
- '000522551606028'
file:
- access_level: open_access
checksum: 0e6658c4fe329d55d4d9bef01c5b15d0
content_type: application/pdf
creator: dernst
date_created: 2020-02-18T07:49:22Z
date_updated: 2020-07-14T12:47:59Z
file_id: '7496'
file_name: 2020_IntMolecSciences_Latorre.pdf
file_size: 4271234
relation: main_file
file_date_updated: 2020-07-14T12:47:59Z
has_accepted_license: '1'
intvolume: ' 21'
isi: 1
issue: '3'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
publication: International Journal of Molecular Sciences
publication_identifier:
eissn:
- 1422-0067
issn:
- 1661-6596
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: Evaluating Face2Gene as a tool to identify Cornelia de Lange syndrome by facial
phenotypes
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 21
year: '2020'
...
---
_id: '7490'
abstract:
- lang: eng
text: In plants, clathrin mediated endocytosis (CME) represents the major route
for cargo internalisation from the cell surface. It has been assumed to operate
in an evolutionary conserved manner as in yeast and animals. Here we report characterisation
of ultrastructure, dynamics and mechanisms of plant CME as allowed by our advancement
in electron microscopy and quantitative live imaging techniques. Arabidopsis CME
appears to follow the constant curvature model and the bona fide CME population
generates vesicles of a predominantly hexagonal-basket type; larger and with faster
kinetics than in other models. Contrary to the existing paradigm, actin is dispensable
for CME events at the plasma membrane but plays a unique role in collecting endocytic
vesicles, sorting of internalised cargos and directional endosome movement that
itself actively promote CME events. Internalized vesicles display a strongly delayed
and sequential uncoating. These unique features highlight the independent evolution
of the plant CME mechanism during the autonomous rise of multicellularity in eukaryotes.
acknowledged_ssus:
- _id: LifeSc
- _id: Bio
- _id: EM-Fac
article_number: e52067
article_processing_charge: No
article_type: original
author:
- first_name: Madhumitha
full_name: Narasimhan, Madhumitha
id: 44BF24D0-F248-11E8-B48F-1D18A9856A87
last_name: Narasimhan
orcid: 0000-0002-8600-0671
- first_name: Alexander J
full_name: Johnson, Alexander J
id: 46A62C3A-F248-11E8-B48F-1D18A9856A87
last_name: Johnson
orcid: 0000-0002-2739-8843
- first_name: Roshan
full_name: Prizak, Roshan
id: 4456104E-F248-11E8-B48F-1D18A9856A87
last_name: Prizak
- first_name: Walter
full_name: Kaufmann, Walter
id: 3F99E422-F248-11E8-B48F-1D18A9856A87
last_name: Kaufmann
orcid: 0000-0001-9735-5315
- first_name: Shutang
full_name: Tan, Shutang
id: 2DE75584-F248-11E8-B48F-1D18A9856A87
last_name: Tan
orcid: 0000-0002-0471-8285
- first_name: Barbara E
full_name: Casillas Perez, Barbara E
id: 351ED2AA-F248-11E8-B48F-1D18A9856A87
last_name: Casillas Perez
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Narasimhan M, Johnson AJ, Prizak R, et al. Evolutionarily unique mechanistic
framework of clathrin-mediated endocytosis in plants. eLife. 2020;9. doi:10.7554/eLife.52067
apa: Narasimhan, M., Johnson, A. J., Prizak, R., Kaufmann, W., Tan, S., Casillas
Perez, B. E., & Friml, J. (2020). Evolutionarily unique mechanistic framework
of clathrin-mediated endocytosis in plants. ELife. eLife Sciences Publications.
https://doi.org/10.7554/eLife.52067
chicago: Narasimhan, Madhumitha, Alexander J Johnson, Roshan Prizak, Walter Kaufmann,
Shutang Tan, Barbara E Casillas Perez, and Jiří Friml. “Evolutionarily Unique
Mechanistic Framework of Clathrin-Mediated Endocytosis in Plants.” ELife.
eLife Sciences Publications, 2020. https://doi.org/10.7554/eLife.52067.
ieee: M. Narasimhan et al., “Evolutionarily unique mechanistic framework
of clathrin-mediated endocytosis in plants,” eLife, vol. 9. eLife Sciences
Publications, 2020.
ista: Narasimhan M, Johnson AJ, Prizak R, Kaufmann W, Tan S, Casillas Perez BE,
Friml J. 2020. Evolutionarily unique mechanistic framework of clathrin-mediated
endocytosis in plants. eLife. 9, e52067.
mla: Narasimhan, Madhumitha, et al. “Evolutionarily Unique Mechanistic Framework
of Clathrin-Mediated Endocytosis in Plants.” ELife, vol. 9, e52067, eLife
Sciences Publications, 2020, doi:10.7554/eLife.52067.
short: M. Narasimhan, A.J. Johnson, R. Prizak, W. Kaufmann, S. Tan, B.E. Casillas
Perez, J. Friml, ELife 9 (2020).
date_created: 2020-02-16T23:00:50Z
date_published: 2020-01-23T00:00:00Z
date_updated: 2025-04-14T07:45:03Z
day: '23'
ddc:
- '570'
- '580'
department:
- _id: JiFr
- _id: GaTk
- _id: EM-Fac
- _id: SyCr
doi: 10.7554/eLife.52067
ec_funded: 1
external_id:
isi:
- '000514104100001'
pmid:
- '31971511'
file:
- access_level: open_access
checksum: 2052daa4be5019534f3a42f200a09f32
content_type: application/pdf
creator: dernst
date_created: 2020-02-18T07:21:16Z
date_updated: 2020-07-14T12:47:59Z
file_id: '7494'
file_name: 2020_eLife_Narasimhan.pdf
file_size: 7247468
relation: main_file
file_date_updated: 2020-07-14T12:47:59Z
has_accepted_license: '1'
intvolume: ' 9'
isi: 1
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '742985'
name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 26538374-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: I03630
name: Molecular mechanisms of endocytic cargo recognition in plants
publication: eLife
publication_identifier:
eissn:
- 2050-084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
scopus_import: '1'
status: public
title: Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis
in plants
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 9
year: '2020'
...
---
_id: '7497'
abstract:
- lang: eng
text: Endophytic fungi can be beneficial to plant growth. However, the molecular
mechanisms underlying colonization of Acremonium spp. remain unclear. In this
study, a novel endophytic Acremonium strain was isolated from the buds of Panax
notoginseng and named Acremonium sp. D212. The Acremonium sp. D212 could colonize
the roots of P. notoginseng, enhance the resistance of P. notoginseng to root
rot disease, and promote root growth and saponin biosynthesis in P. notoginseng.
Acremonium sp. D212 could secrete indole‐3‐acetic acid (IAA) and jasmonic acid
(JA), and inoculation with the fungus increased the endogenous levels of IAA and
JA in P. notoginseng. Colonization of the Acremonium sp. D212 in the roots of
the rice line Nipponbare was dependent on the concentration of methyl jasmonate
(MeJA) (2 to 15 μM) and 1‐naphthalenacetic acid (NAA) (10 to 20 μM). Moreover,
the roots of the JA signalling‐defective coi1‐18 mutant were colonized by Acremonium
sp. D212 to a lesser degree than those of the wild‐type Nipponbare and miR393b‐overexpressing
lines, and the colonization was rescued by MeJA but not by NAA. It suggests that
the cross‐talk between JA signalling and the auxin biosynthetic pathway plays
a crucial role in the colonization of Acremonium sp. D212 in host plants.
acknowledgement: We thank Professor Jianqiang Wu (Kunming Institute of Botany, Chinese
Academy of Sciences) for providing generous support with the IAA and JA measurements.
We thank Professor Guohua Xu (Nanjing Agricultural University) for generously providing
the Nipponbare rice expressing DR5::GUS. We thank Professor Muyuan Zhu (Zhejiang
University) for generously providing a rice line expressing 35S::miR393b. We thank
Professor Yinong Yang (Pennsylvania State University) for generously providing the
rice line coi1-18. This work was supported by grants from the National Natural Science
Foundation of China (31660501, 31460453, 31860064 and 31470382), the Major Special
Program for Scientific Research, Education Department of Yunnan Province (ZD2015005),
the Project sponsored by SRF for ROCS, SEM ([2013] 1792), the Major Science and
Technique Programs in Yunnan Province (2016ZF001), the Key Projects of the Applied
Basic Research Plan of Yunnan Province (2017FA018), the National Key R&D Program
of China (2018YFD0201100) and the China Agriculture Research System (CARS-21).
article_processing_charge: No
article_type: original
author:
- first_name: L
full_name: Han, L
last_name: Han
- first_name: X
full_name: Zhou, X
last_name: Zhou
- first_name: Y
full_name: Zhao, Y
last_name: Zhao
- first_name: S
full_name: Zhu, S
last_name: Zhu
- first_name: L
full_name: Wu, L
last_name: Wu
- first_name: Y
full_name: He, Y
last_name: He
- first_name: X
full_name: Ping, X
last_name: Ping
- first_name: X
full_name: Lu, X
last_name: Lu
- first_name: W
full_name: Huang, W
last_name: Huang
- first_name: J
full_name: Qian, J
last_name: Qian
- first_name: L
full_name: Zhang, L
last_name: Zhang
- first_name: X
full_name: Jiang, X
last_name: Jiang
- first_name: D
full_name: Zhu, D
last_name: Zhu
- first_name: C
full_name: Luo, C
last_name: Luo
- first_name: S
full_name: Li, S
last_name: Li
- first_name: Q
full_name: Dong, Q
last_name: Dong
- first_name: Q
full_name: Fu, Q
last_name: Fu
- first_name: K
full_name: Deng, K
last_name: Deng
- first_name: X
full_name: Wang, X
last_name: Wang
- first_name: L
full_name: Wang, L
last_name: Wang
- first_name: S
full_name: Peng, S
last_name: Peng
- first_name: J
full_name: Wu, J
last_name: Wu
- first_name: W
full_name: Li, W
last_name: Li
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Y
full_name: Zhu, Y
last_name: Zhu
- first_name: X
full_name: He, X
last_name: He
- first_name: Y
full_name: Du, Y
last_name: Du
citation:
ama: Han L, Zhou X, Zhao Y, et al. Colonization of endophyte Acremonium sp. D212
in Panax notoginseng and rice mediated by auxin and jasmonic acid. Journal
of Integrative Plant Biology. 2020;62(9):1433-1451. doi:10.1111/jipb.12905
apa: Han, L., Zhou, X., Zhao, Y., Zhu, S., Wu, L., He, Y., … Du, Y. (2020). Colonization
of endophyte Acremonium sp. D212 in Panax notoginseng and rice mediated by auxin
and jasmonic acid. Journal of Integrative Plant Biology. Wiley. https://doi.org/10.1111/jipb.12905
chicago: Han, L, X Zhou, Y Zhao, S Zhu, L Wu, Y He, X Ping, et al. “Colonization
of Endophyte Acremonium Sp. D212 in Panax Notoginseng and Rice Mediated by Auxin
and Jasmonic Acid.” Journal of Integrative Plant Biology. Wiley, 2020.
https://doi.org/10.1111/jipb.12905.
ieee: L. Han et al., “Colonization of endophyte Acremonium sp. D212 in Panax
notoginseng and rice mediated by auxin and jasmonic acid,” Journal of Integrative
Plant Biology, vol. 62, no. 9. Wiley, pp. 1433–1451, 2020.
ista: Han L, Zhou X, Zhao Y, Zhu S, Wu L, He Y, Ping X, Lu X, Huang W, Qian J, Zhang
L, Jiang X, Zhu D, Luo C, Li S, Dong Q, Fu Q, Deng K, Wang X, Wang L, Peng S,
Wu J, Li W, Friml J, Zhu Y, He X, Du Y. 2020. Colonization of endophyte Acremonium
sp. D212 in Panax notoginseng and rice mediated by auxin and jasmonic acid. Journal
of Integrative Plant Biology. 62(9), 1433–1451.
mla: Han, L., et al. “Colonization of Endophyte Acremonium Sp. D212 in Panax Notoginseng
and Rice Mediated by Auxin and Jasmonic Acid.” Journal of Integrative Plant
Biology, vol. 62, no. 9, Wiley, 2020, pp. 1433–51, doi:10.1111/jipb.12905.
short: L. Han, X. Zhou, Y. Zhao, S. Zhu, L. Wu, Y. He, X. Ping, X. Lu, W. Huang,
J. Qian, L. Zhang, X. Jiang, D. Zhu, C. Luo, S. Li, Q. Dong, Q. Fu, K. Deng, X.
Wang, L. Wang, S. Peng, J. Wu, W. Li, J. Friml, Y. Zhu, X. He, Y. Du, Journal
of Integrative Plant Biology 62 (2020) 1433–1451.
date_created: 2020-02-18T10:02:25Z
date_published: 2020-09-01T00:00:00Z
date_updated: 2023-08-18T06:44:16Z
day: '01'
department:
- _id: JiFr
doi: 10.1111/jipb.12905
external_id:
isi:
- '000515803000001'
pmid:
- '31912615'
intvolume: ' 62'
isi: 1
issue: '9'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1111/jipb.12905
month: '09'
oa: 1
oa_version: Published Version
page: 1433-1451
pmid: 1
publication: Journal of Integrative Plant Biology
publication_identifier:
eissn:
- 1744-7909
issn:
- 1672-9072
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Colonization of endophyte Acremonium sp. D212 in Panax notoginseng and rice
mediated by auxin and jasmonic acid
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 62
year: '2020'
...
---
_id: '7505'
abstract:
- lang: eng
text: Neural networks have demonstrated unmatched performance in a range of classification
tasks. Despite numerous efforts of the research community, novelty detection remains
one of the significant limitations of neural networks. The ability to identify
previously unseen inputs as novel is crucial for our understanding of the decisions
made by neural networks. At runtime, inputs not falling into any of the categories
learned during training cannot be classified correctly by the neural network.
Existing approaches treat the neural network as a black box and try to detect
novel inputs based on the confidence of the output predictions. However, neural
networks are not trained to reduce their confidence for novel inputs, which limits
the effectiveness of these approaches. We propose a framework to monitor a neural
network by observing the hidden layers. We employ a common abstraction from program
analysis - boxes - to identify novel behaviors in the monitored layers, i.e.,
inputs that cause behaviors outside the box. For each neuron, the boxes range
over the values seen in training. The framework is efficient and flexible to achieve
a desired trade-off between raising false warnings and detecting novel inputs.
We illustrate the performance and the robustness to variability in the unknown
classes on popular image-classification benchmarks.
acknowledgement: We thank Christoph Lampert and Nikolaus Mayer for fruitful discussions.
This research was supported in part by the Austrian Science Fund (FWF) under grants
S11402-N23 (RiSE/SHiNE) and Z211-N23 (Wittgenstein Award) and the European Union’s
Horizon 2020 research and innovation programme under the Marie SkłodowskaCurie grant
agreement No. 754411.
alternative_title:
- Frontiers in Artificial Intelligence and Applications
article_processing_charge: No
arxiv: 1
author:
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000-0002-2985-7724
- first_name: Anna
full_name: Lukina, Anna
id: CBA4D1A8-0FE8-11E9-BDE6-07BFE5697425
last_name: Lukina
- first_name: Christian
full_name: Schilling, Christian
id: 3A2F4DCE-F248-11E8-B48F-1D18A9856A87
last_name: Schilling
orcid: 0000-0003-3658-1065
citation:
ama: 'Henzinger TA, Lukina A, Schilling C. Outside the box: Abstraction-based monitoring
of neural networks. In: 24th European Conference on Artificial Intelligence.
Vol 325. IOS Press; 2020:2433-2440. doi:10.3233/FAIA200375'
apa: 'Henzinger, T. A., Lukina, A., & Schilling, C. (2020). Outside the box:
Abstraction-based monitoring of neural networks. In 24th European Conference
on Artificial Intelligence (Vol. 325, pp. 2433–2440). Santiago de Compostela,
Spain: IOS Press. https://doi.org/10.3233/FAIA200375'
chicago: 'Henzinger, Thomas A, Anna Lukina, and Christian Schilling. “Outside the
Box: Abstraction-Based Monitoring of Neural Networks.” In 24th European Conference
on Artificial Intelligence, 325:2433–40. IOS Press, 2020. https://doi.org/10.3233/FAIA200375.'
ieee: 'T. A. Henzinger, A. Lukina, and C. Schilling, “Outside the box: Abstraction-based
monitoring of neural networks,” in 24th European Conference on Artificial Intelligence,
Santiago de Compostela, Spain, 2020, vol. 325, pp. 2433–2440.'
ista: 'Henzinger TA, Lukina A, Schilling C. 2020. Outside the box: Abstraction-based
monitoring of neural networks. 24th European Conference on Artificial Intelligence.
ECAI: European Conference on Artificial Intelligence, Frontiers in Artificial
Intelligence and Applications, vol. 325, 2433–2440.'
mla: 'Henzinger, Thomas A., et al. “Outside the Box: Abstraction-Based Monitoring
of Neural Networks.” 24th European Conference on Artificial Intelligence,
vol. 325, IOS Press, 2020, pp. 2433–40, doi:10.3233/FAIA200375.'
short: T.A. Henzinger, A. Lukina, C. Schilling, in:, 24th European Conference on
Artificial Intelligence, IOS Press, 2020, pp. 2433–2440.
conference:
end_date: 2020-09-08
location: Santiago de Compostela, Spain
name: 'ECAI: European Conference on Artificial Intelligence'
start_date: 2020-08-29
corr_author: '1'
date_created: 2020-02-21T16:44:03Z
date_published: 2020-02-24T00:00:00Z
date_updated: 2025-04-15T06:26:13Z
day: '24'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.3233/FAIA200375
ec_funded: 1
external_id:
arxiv:
- '1911.09032'
isi:
- '000650971303002'
file:
- access_level: open_access
checksum: 80642fa0b6cd7da95dcd87d63789ad5e
content_type: application/pdf
creator: dernst
date_created: 2020-09-21T07:12:32Z
date_updated: 2020-09-21T07:12:32Z
file_id: '8540'
file_name: 2020_ECAI_Henzinger.pdf
file_size: 1692214
relation: main_file
success: 1
file_date_updated: 2020-09-21T07:12:32Z
has_accepted_license: '1'
intvolume: ' 325'
isi: 1
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc/4.0/
month: '02'
oa: 1
oa_version: Published Version
page: 2433-2440
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S 11407_N23
name: Rigorous Systems Engineering
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: Z211
name: Formal methods for the design and analysis of complex systems
publication: 24th European Conference on Artificial Intelligence
publication_status: published
publisher: IOS Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Outside the box: Abstraction-based monitoring of neural networks'
tmp:
image: /images/cc_by_nc.png
legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
short: CC BY-NC (4.0)
type: conference
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 325
year: '2020'
...
---
_id: '7508'
abstract:
- lang: eng
text: In this paper, we introduce a novel method for deriving higher order corrections
to the mean-field description of the dynamics of interacting bosons. More precisely,
we consider the dynamics of N d-dimensional bosons for large N. The bosons initially
form a Bose–Einstein condensate and interact with each other via a pair potential
of the form (N−1)−1Ndβv(Nβ·)forβ∈[0,14d). We derive a sequence of N-body functions
which approximate the true many-body dynamics in L2(RdN)-norm to arbitrary precision
in powers of N−1. The approximating functions are constructed as Duhamel expansions
of finite order in terms of the first quantised analogue of a Bogoliubov time
evolution.
acknowledgement: "Open access funding provided by Institute of Science and Technology
(IST Austria).\r\nL.B. gratefully acknowledges the support by the German Research
Foundation (DFG) within the Research Training Group 1838 “Spectral Theory and Dynamics
of Quantum Systems”, and wishes to thank Stefan Teufel, Sören Petrat and Marcello
Porta for helpful discussions. This project has received funding from the European
Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie
Grant Agreement No. 754411. N.P. gratefully acknowledges support from NSF grant
DMS-1516228 and DMS-1840314. P.P.’s research was funded by DFG Grant no. PI 1114/3-1.
Part of this work was done when N.P. and P.P. were visiting CCNU, Wuhan. N.P. and
P.P. thank A.S. for his hospitality at CCNU."
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Lea
full_name: Bossmann, Lea
id: A2E3BCBE-5FCC-11E9-AA4B-76F3E5697425
last_name: Bossmann
orcid: 0000-0002-6854-1343
- first_name: Nataša
full_name: Pavlović, Nataša
last_name: Pavlović
- first_name: Peter
full_name: Pickl, Peter
last_name: Pickl
- first_name: Avy
full_name: Soffer, Avy
last_name: Soffer
citation:
ama: Bossmann L, Pavlović N, Pickl P, Soffer A. Higher order corrections to the
mean-field description of the dynamics of interacting bosons. Journal of Statistical
Physics. 2020;178:1362-1396. doi:10.1007/s10955-020-02500-8
apa: Bossmann, L., Pavlović, N., Pickl, P., & Soffer, A. (2020). Higher order
corrections to the mean-field description of the dynamics of interacting bosons.
Journal of Statistical Physics. Springer Nature. https://doi.org/10.1007/s10955-020-02500-8
chicago: Bossmann, Lea, Nataša Pavlović, Peter Pickl, and Avy Soffer. “Higher Order
Corrections to the Mean-Field Description of the Dynamics of Interacting Bosons.”
Journal of Statistical Physics. Springer Nature, 2020. https://doi.org/10.1007/s10955-020-02500-8.
ieee: L. Bossmann, N. Pavlović, P. Pickl, and A. Soffer, “Higher order corrections
to the mean-field description of the dynamics of interacting bosons,” Journal
of Statistical Physics, vol. 178. Springer Nature, pp. 1362–1396, 2020.
ista: Bossmann L, Pavlović N, Pickl P, Soffer A. 2020. Higher order corrections
to the mean-field description of the dynamics of interacting bosons. Journal of
Statistical Physics. 178, 1362–1396.
mla: Bossmann, Lea, et al. “Higher Order Corrections to the Mean-Field Description
of the Dynamics of Interacting Bosons.” Journal of Statistical Physics,
vol. 178, Springer Nature, 2020, pp. 1362–96, doi:10.1007/s10955-020-02500-8.
short: L. Bossmann, N. Pavlović, P. Pickl, A. Soffer, Journal of Statistical Physics
178 (2020) 1362–1396.
corr_author: '1'
date_created: 2020-02-23T09:45:51Z
date_published: 2020-02-21T00:00:00Z
date_updated: 2025-04-14T07:44:03Z
day: '21'
ddc:
- '510'
department:
- _id: RoSe
doi: 10.1007/s10955-020-02500-8
ec_funded: 1
external_id:
arxiv:
- '1905.06164'
isi:
- '000516342200001'
file:
- access_level: open_access
checksum: 643e230bf147e64d9cdb3f6cc573679d
content_type: application/pdf
creator: dernst
date_created: 2020-11-20T09:26:46Z
date_updated: 2020-11-20T09:26:46Z
file_id: '8780'
file_name: 2020_JournStatPhysics_Bossmann.pdf
file_size: 576726
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success: 1
file_date_updated: 2020-11-20T09:26:46Z
has_accepted_license: '1'
intvolume: ' 178'
isi: 1
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 1362-1396
project:
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
name: IST Austria Open Access Fund
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
publication: Journal of Statistical Physics
publication_identifier:
eissn:
- 1572-9613
issn:
- 0022-4715
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Higher order corrections to the mean-field description of the dynamics of interacting
bosons
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 178
year: '2020'
...
---
_id: '7509'
abstract:
- lang: eng
text: "In this paper we study the joint convexity/concavity of the trace functions
Ψp,q,s(A,B)=Tr(Bq2K∗ApKBq2)s, p,q,s∈R,\r\nwhere A and B are positive definite
matrices and K is any fixed invertible matrix. We will give full range of (p,q,s)∈R3
for Ψp,q,s to be jointly convex/concave for all K. As a consequence, we confirm
a conjecture of Carlen, Frank and Lieb. In particular, we confirm a weaker conjecture
of Audenaert and Datta and obtain the full range of (α,z) for α-z Rényi relative
entropies to be monotone under completely positive trace preserving maps. We also
give simpler proofs of many known results, including the concavity of Ψp,0,1/p
for 0Advances in Mathematics. 2020;365. doi:10.1016/j.aim.2020.107053
apa: Zhang, H. (2020). From Wigner-Yanase-Dyson conjecture to Carlen-Frank-Lieb
conjecture. Advances in Mathematics. Elsevier. https://doi.org/10.1016/j.aim.2020.107053
chicago: Zhang, Haonan. “From Wigner-Yanase-Dyson Conjecture to Carlen-Frank-Lieb
Conjecture.” Advances in Mathematics. Elsevier, 2020. https://doi.org/10.1016/j.aim.2020.107053.
ieee: H. Zhang, “From Wigner-Yanase-Dyson conjecture to Carlen-Frank-Lieb conjecture,”
Advances in Mathematics, vol. 365. Elsevier, 2020.
ista: Zhang H. 2020. From Wigner-Yanase-Dyson conjecture to Carlen-Frank-Lieb conjecture.
Advances in Mathematics. 365, 107053.
mla: Zhang, Haonan. “From Wigner-Yanase-Dyson Conjecture to Carlen-Frank-Lieb Conjecture.”
Advances in Mathematics, vol. 365, 107053, Elsevier, 2020, doi:10.1016/j.aim.2020.107053.
short: H. Zhang, Advances in Mathematics 365 (2020).
date_created: 2020-02-23T21:43:50Z
date_published: 2020-05-13T00:00:00Z
date_updated: 2025-04-14T07:44:03Z
day: '13'
ddc:
- '515'
department:
- _id: JaMa
doi: 10.1016/j.aim.2020.107053
ec_funded: 1
external_id:
arxiv:
- '1811.01205'
isi:
- '000522798000001'
intvolume: ' 365'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1811.01205
month: '05'
oa: 1
oa_version: Preprint
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
publication: Advances in Mathematics
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: From Wigner-Yanase-Dyson conjecture to Carlen-Frank-Lieb conjecture
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 365
year: '2020'
...
---
_id: '7512'
abstract:
- lang: eng
text: We consider general self-adjoint polynomials in several independent random
matrices whose entries are centered and have the same variance. We show that under
certain conditions the local law holds up to the optimal scale, i.e., the eigenvalue
density on scales just above the eigenvalue spacing follows the global density
of states which is determined by free probability theory. We prove that these
conditions hold for general homogeneous polynomials of degree two and for symmetrized
products of independent matrices with i.i.d. entries, thus establishing the optimal
bulk local law for these classes of ensembles. In particular, we generalize a
similar result of Anderson for anticommutator. For more general polynomials our
conditions are effectively checkable numerically.
acknowledgement: "The authors are grateful to Oskari Ajanki for his invaluable help
at the initial stage of this project, to Serban Belinschi for useful discussions,
to Alexander Tikhomirov for calling our attention to the model example in Section
6.2 and to the anonymous referee for suggesting to simplify certain proofs. Erdös:
Partially funded by ERC Advanced Grant RANMAT No. 338804\r\n"
article_number: '108507'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: László
full_name: Erdös, László
id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
last_name: Erdös
orcid: 0000-0001-5366-9603
- first_name: Torben H
full_name: Krüger, Torben H
id: 3020C786-F248-11E8-B48F-1D18A9856A87
last_name: Krüger
orcid: 0000-0002-4821-3297
- first_name: Yuriy
full_name: Nemish, Yuriy
id: 4D902E6A-F248-11E8-B48F-1D18A9856A87
last_name: Nemish
orcid: 0000-0002-7327-856X
citation:
ama: Erdös L, Krüger TH, Nemish Y. Local laws for polynomials of Wigner matrices.
Journal of Functional Analysis. 2020;278(12). doi:10.1016/j.jfa.2020.108507
apa: Erdös, L., Krüger, T. H., & Nemish, Y. (2020). Local laws for polynomials
of Wigner matrices. Journal of Functional Analysis. Elsevier. https://doi.org/10.1016/j.jfa.2020.108507
chicago: Erdös, László, Torben H Krüger, and Yuriy Nemish. “Local Laws for Polynomials
of Wigner Matrices.” Journal of Functional Analysis. Elsevier, 2020. https://doi.org/10.1016/j.jfa.2020.108507.
ieee: L. Erdös, T. H. Krüger, and Y. Nemish, “Local laws for polynomials of Wigner
matrices,” Journal of Functional Analysis, vol. 278, no. 12. Elsevier,
2020.
ista: Erdös L, Krüger TH, Nemish Y. 2020. Local laws for polynomials of Wigner matrices.
Journal of Functional Analysis. 278(12), 108507.
mla: Erdös, László, et al. “Local Laws for Polynomials of Wigner Matrices.” Journal
of Functional Analysis, vol. 278, no. 12, 108507, Elsevier, 2020, doi:10.1016/j.jfa.2020.108507.
short: L. Erdös, T.H. Krüger, Y. Nemish, Journal of Functional Analysis 278 (2020).
date_created: 2020-02-23T23:00:36Z
date_published: 2020-07-01T00:00:00Z
date_updated: 2025-07-10T11:54:43Z
day: '01'
department:
- _id: LaEr
doi: 10.1016/j.jfa.2020.108507
ec_funded: 1
external_id:
arxiv:
- '1804.11340'
isi:
- '000522798900001'
intvolume: ' 278'
isi: 1
issue: '12'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1804.11340
month: '07'
oa: 1
oa_version: Preprint
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '338804'
name: Random matrices, universality and disordered quantum systems
publication: Journal of Functional Analysis
publication_identifier:
eissn:
- 1096-0783
issn:
- 0022-1236
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Local laws for polynomials of Wigner matrices
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 278
year: '2020'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '7530'
abstract:
- lang: eng
text: In developing technologies based on superconducting quantum circuits, the
need to control and route heating is a significant challenge in the experimental
realisation and operation of these devices. One of the more ubiquitous devices
in the current quantum computing toolbox is the transmon-type superconducting
quantum bit, embedded in a resonator-based architecture. In the study of heat
transport in superconducting circuits, a versatile and sensitive thermometer is
based on studying the tunnelling characteristics of superconducting probes weakly
coupled to a normal-metal island. Here we show that by integrating superconducting
quantum bit coupled to two superconducting resonators at different frequencies,
each resonator terminated (and thermally populated) by such a mesoscopic thin
film metal island, one can experimentally observe magnetic flux-tunable photonic
heat rectification between 0 and 10%.
article_number: '40'
article_processing_charge: No
article_type: original
author:
- first_name: Jorden L
full_name: Senior, Jorden L
id: 5479D234-2D30-11EA-89CC-40953DDC885E
last_name: Senior
orcid: 0000-0002-0672-9295
- first_name: Azat
full_name: Gubaydullin, Azat
last_name: Gubaydullin
- first_name: Bayan
full_name: Karimi, Bayan
last_name: Karimi
- first_name: Joonas T.
full_name: Peltonen, Joonas T.
last_name: Peltonen
- first_name: Joachim
full_name: Ankerhold, Joachim
last_name: Ankerhold
- first_name: Jukka P.
full_name: Pekola, Jukka P.
last_name: Pekola
citation:
ama: Senior JL, Gubaydullin A, Karimi B, Peltonen JT, Ankerhold J, Pekola JP. Heat
rectification via a superconducting artificial atom. Communications Physics.
2020;3(1). doi:10.1038/s42005-020-0307-5
apa: Senior, J. L., Gubaydullin, A., Karimi, B., Peltonen, J. T., Ankerhold, J.,
& Pekola, J. P. (2020). Heat rectification via a superconducting artificial
atom. Communications Physics. Springer Nature. https://doi.org/10.1038/s42005-020-0307-5
chicago: Senior, Jorden L, Azat Gubaydullin, Bayan Karimi, Joonas T. Peltonen, Joachim
Ankerhold, and Jukka P. Pekola. “Heat Rectification via a Superconducting Artificial
Atom.” Communications Physics. Springer Nature, 2020. https://doi.org/10.1038/s42005-020-0307-5.
ieee: J. L. Senior, A. Gubaydullin, B. Karimi, J. T. Peltonen, J. Ankerhold, and
J. P. Pekola, “Heat rectification via a superconducting artificial atom,” Communications
Physics, vol. 3, no. 1. Springer Nature, 2020.
ista: Senior JL, Gubaydullin A, Karimi B, Peltonen JT, Ankerhold J, Pekola JP. 2020.
Heat rectification via a superconducting artificial atom. Communications Physics.
3(1), 40.
mla: Senior, Jorden L., et al. “Heat Rectification via a Superconducting Artificial
Atom.” Communications Physics, vol. 3, no. 1, 40, Springer Nature, 2020,
doi:10.1038/s42005-020-0307-5.
short: J.L. Senior, A. Gubaydullin, B. Karimi, J.T. Peltonen, J. Ankerhold, J.P.
Pekola, Communications Physics 3 (2020).
date_created: 2020-02-26T13:51:14Z
date_published: 2020-02-25T00:00:00Z
date_updated: 2024-10-15T12:36:24Z
day: '25'
ddc:
- '536'
doi: 10.1038/s42005-020-0307-5
extern: '1'
file:
- access_level: open_access
checksum: 59255f51d9f113c40e3047e9ac83d367
content_type: application/pdf
creator: dernst
date_created: 2020-03-03T10:41:13Z
date_updated: 2020-07-14T12:48:00Z
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file_name: s42005-020-0307-5.pdf
file_size: 1590721
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content_type: application/pdf
creator: dernst
date_created: 2020-03-03T10:41:13Z
date_updated: 2020-07-14T12:48:00Z
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file_name: 42005_2020_307_MOESM1_ESM.pdf
file_size: 1007249
relation: main_file
file_date_updated: 2020-07-14T12:48:00Z
has_accepted_license: '1'
intvolume: ' 3'
issue: '1'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
publication: Communications Physics
publication_identifier:
issn:
- 2399-3650
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Heat rectification via a superconducting artificial atom
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 0043cee0-e5fc-11ee-9736-f83bc23afbf0
volume: 3
year: '2020'
...
---
_id: '7534'
abstract:
- lang: eng
text: 'In the past two decades, our understanding of the transition to turbulence
in shear flows with linearly stable laminar solutions has greatly improved. Regarding
the susceptibility of the laminar flow, two concepts have been particularly useful:
the edge states and the minimal seeds. In this nonlinear picture of the transition,
the basin boundary of turbulence is set by the edge state''s stable manifold and
this manifold comes closest in energy to the laminar equilibrium at the minimal
seed. We begin this paper by presenting numerical experiments in which three-dimensional
perturbations are too energetic to trigger turbulence in pipe flow but they do
lead to turbulence when their amplitude is reduced. We show that this seemingly
counterintuitive observation is in fact consistent with the fully nonlinear description
of the transition mediated by the edge state. In order to understand the physical
mechanisms behind this process, we measure the turbulent kinetic energy production
and dissipation rates as a function of the radial coordinate. Our main observation
is that the transition to turbulence relies on the energy amplification away from
the wall, as opposed to the turbulence itself, whose energy is predominantly produced
near the wall. This observation is further supported by the similar analyses on
the minimal seeds and the edge states. Furthermore, we show that the time evolution
of production-over-dissipation curves provides a clear distinction between the
different initial amplification stages of the transition to turbulence from the
minimal seed.'
article_number: '023903'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Nazmi B
full_name: Budanur, Nazmi B
id: 3EA1010E-F248-11E8-B48F-1D18A9856A87
last_name: Budanur
orcid: 0000-0003-0423-5010
- first_name: Elena
full_name: Marensi, Elena
last_name: Marensi
- first_name: Ashley P.
full_name: Willis, Ashley P.
last_name: Willis
- first_name: Björn
full_name: Hof, Björn
id: 3A374330-F248-11E8-B48F-1D18A9856A87
last_name: Hof
orcid: 0000-0003-2057-2754
citation:
ama: Budanur NB, Marensi E, Willis AP, Hof B. Upper edge of chaos and the energetics
of transition in pipe flow. Physical Review Fluids. 2020;5(2). doi:10.1103/physrevfluids.5.023903
apa: Budanur, N. B., Marensi, E., Willis, A. P., & Hof, B. (2020). Upper edge
of chaos and the energetics of transition in pipe flow. Physical Review Fluids.
American Physical Society. https://doi.org/10.1103/physrevfluids.5.023903
chicago: Budanur, Nazmi B, Elena Marensi, Ashley P. Willis, and Björn Hof. “Upper
Edge of Chaos and the Energetics of Transition in Pipe Flow.” Physical Review
Fluids. American Physical Society, 2020. https://doi.org/10.1103/physrevfluids.5.023903.
ieee: N. B. Budanur, E. Marensi, A. P. Willis, and B. Hof, “Upper edge of chaos
and the energetics of transition in pipe flow,” Physical Review Fluids,
vol. 5, no. 2. American Physical Society, 2020.
ista: Budanur NB, Marensi E, Willis AP, Hof B. 2020. Upper edge of chaos and the
energetics of transition in pipe flow. Physical Review Fluids. 5(2), 023903.
mla: Budanur, Nazmi B., et al. “Upper Edge of Chaos and the Energetics of Transition
in Pipe Flow.” Physical Review Fluids, vol. 5, no. 2, 023903, American
Physical Society, 2020, doi:10.1103/physrevfluids.5.023903.
short: N.B. Budanur, E. Marensi, A.P. Willis, B. Hof, Physical Review Fluids 5 (2020).
date_created: 2020-02-27T10:26:57Z
date_published: 2020-02-21T00:00:00Z
date_updated: 2023-08-18T06:44:46Z
day: '21'
department:
- _id: BjHo
doi: 10.1103/physrevfluids.5.023903
external_id:
arxiv:
- '1912.09270'
isi:
- '000515065100001'
intvolume: ' 5'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1912.09270
month: '02'
oa: 1
oa_version: Preprint
publication: Physical Review Fluids
publication_identifier:
issn:
- 2469-990X
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Upper edge of chaos and the energetics of transition in pipe flow
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 5
year: '2020'
...