---
_id: '7540'
abstract:
- lang: eng
  text: ' In vitro propagation of the ornamentally interesting species Wikstroemia
    gemmata is limited by the recalcitrance to form adventitious roots. In this article,
    two strategies to improve the rooting capacity of in vitro microcuttings are presented.
    Firstly, the effect of exogenous auxin was evaluated in both light and dark cultivated
    stem segments and also the sucrose-content of the medium was varied in order to
    determine better rooting conditions. Secondly, different spectral lights were
    evaluated and the effect on shoot growth and root induction demonstrated that
    the exact spectral composition of light is important for successful in vitro growth
    and development of Wikstroemia gemmata. We show that exogenous auxin cannot compensate
    for the poor rooting under unfavorable light conditions. Adapting the culture
    conditions is therefore paramount for successful industrial propagation of Wikstroemia
    gemmata. '
article_processing_charge: No
article_type: original
author:
- first_name: Inge
  full_name: Verstraeten, Inge
  id: 362BF7FE-F248-11E8-B48F-1D18A9856A87
  last_name: Verstraeten
  orcid: 0000-0001-7241-2328
- first_name: H.
  full_name: Buyle, H.
  last_name: Buyle
- first_name: S.
  full_name: Werbrouck, S.
  last_name: Werbrouck
- first_name: M.C.
  full_name: Van Labeke, M.C.
  last_name: Van Labeke
- first_name: D.
  full_name: Geelen, D.
  last_name: Geelen
citation:
  ama: Verstraeten I, Buyle H, Werbrouck S, Van Labeke MC, Geelen D. In vitro shoot
    growth and adventitious rooting of Wikstroemia gemmata depends on light quality.
    <i>Israel Journal of Plant Sciences</i>. 2020;67(1-2):16-26. doi:<a href="https://doi.org/10.1163/22238980-20191110">10.1163/22238980-20191110</a>
  apa: Verstraeten, I., Buyle, H., Werbrouck, S., Van Labeke, M. C., &#38; Geelen,
    D. (2020). In vitro shoot growth and adventitious rooting of Wikstroemia gemmata
    depends on light quality. <i>Israel Journal of Plant Sciences</i>. Brill. <a href="https://doi.org/10.1163/22238980-20191110">https://doi.org/10.1163/22238980-20191110</a>
  chicago: Verstraeten, Inge, H. Buyle, S. Werbrouck, M.C. Van Labeke, and D. Geelen.
    “In Vitro Shoot Growth and Adventitious Rooting of Wikstroemia Gemmata Depends
    on Light Quality.” <i>Israel Journal of Plant Sciences</i>. Brill, 2020. <a href="https://doi.org/10.1163/22238980-20191110">https://doi.org/10.1163/22238980-20191110</a>.
  ieee: I. Verstraeten, H. Buyle, S. Werbrouck, M. C. Van Labeke, and D. Geelen, “In
    vitro shoot growth and adventitious rooting of Wikstroemia gemmata depends on
    light quality,” <i>Israel Journal of Plant Sciences</i>, vol. 67, no. 1–2. Brill,
    pp. 16–26, 2020.
  ista: Verstraeten I, Buyle H, Werbrouck S, Van Labeke MC, Geelen D. 2020. In vitro
    shoot growth and adventitious rooting of Wikstroemia gemmata depends on light
    quality. Israel Journal of Plant Sciences. 67(1–2), 16–26.
  mla: Verstraeten, Inge, et al. “In Vitro Shoot Growth and Adventitious Rooting of
    Wikstroemia Gemmata Depends on Light Quality.” <i>Israel Journal of Plant Sciences</i>,
    vol. 67, no. 1–2, Brill, 2020, pp. 16–26, doi:<a href="https://doi.org/10.1163/22238980-20191110">10.1163/22238980-20191110</a>.
  short: I. Verstraeten, H. Buyle, S. Werbrouck, M.C. Van Labeke, D. Geelen, Israel
    Journal of Plant Sciences 67 (2020) 16–26.
date_created: 2020-02-28T09:18:01Z
date_published: 2020-02-01T00:00:00Z
date_updated: 2023-08-18T06:45:15Z
day: '01'
department:
- _id: JiFr
doi: 10.1163/22238980-20191110
external_id:
  isi:
  - '000525343300004'
intvolume: '        67'
isi: 1
issue: 1-2
language:
- iso: eng
month: '02'
oa_version: None
page: 16-26
publication: Israel Journal of Plant Sciences
publication_identifier:
  eissn:
  - 2223-8980
  issn:
  - 0792-9978
publication_status: published
publisher: Brill
quality_controlled: '1'
scopus_import: '1'
status: public
title: In vitro shoot growth and adventitious rooting of Wikstroemia gemmata depends
  on light quality
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 67
year: '2020'
...
---
_id: '7545'
abstract:
- lang: eng
  text: Neuronal activity often leads to alterations in gene expression and cellular
    architecture. The nematode Caenorhabditis elegans, owing to its compact translucent
    nervous system, is a powerful system in which to study conserved aspects of the
    development and plasticity of neuronal morphology. Here we focus on one pair of
    sensory neurons, termed URX, which the worm uses to sense and avoid high levels
    of environmental oxygen. Previous studies have reported that the URX neuron pair
    has variable branched endings at its dendritic sensory tip. By controlling oxygen
    levels and analyzing mutants, we found that these microtubule-rich branched endings
    grow over time as a consequence of neuronal activity in adulthood. We also find
    that the growth of these branches correlates with an increase in cellular sensitivity
    to particular ranges of oxygen that is observable in the behavior of older worms.
    Given the strengths of C. elegans as a model organism, URX may serve as a potent
    system for uncovering genes and mechanisms involved in activity-dependent morphological
    changes in neurons and possible adaptive changes in the aging nervous system.
article_processing_charge: No
article_type: original
author:
- first_name: Jesse A.
  full_name: Cohn, Jesse A.
  last_name: Cohn
- first_name: Elizabeth R.
  full_name: Cebul, Elizabeth R.
  last_name: Cebul
- first_name: Giulio
  full_name: Valperga, Giulio
  last_name: Valperga
- first_name: Lotti
  full_name: Brose, Lotti
  last_name: Brose
- first_name: Mario
  full_name: de Bono, Mario
  id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
  last_name: de Bono
  orcid: 0000-0001-8347-0443
- first_name: Maxwell G.
  full_name: Heiman, Maxwell G.
  last_name: Heiman
- first_name: Jonathan T.
  full_name: Pierce, Jonathan T.
  last_name: Pierce
citation:
  ama: Cohn JA, Cebul ER, Valperga G, et al. Long-term activity drives dendritic branch
    elaboration of a C. elegans sensory neuron. <i>Developmental Biology</i>. 2020;461(1):66-74.
    doi:<a href="https://doi.org/10.1016/j.ydbio.2020.01.005">10.1016/j.ydbio.2020.01.005</a>
  apa: Cohn, J. A., Cebul, E. R., Valperga, G., Brose, L., de Bono, M., Heiman, M.
    G., &#38; Pierce, J. T. (2020). Long-term activity drives dendritic branch elaboration
    of a C. elegans sensory neuron. <i>Developmental Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.ydbio.2020.01.005">https://doi.org/10.1016/j.ydbio.2020.01.005</a>
  chicago: Cohn, Jesse A., Elizabeth R. Cebul, Giulio Valperga, Lotti Brose, Mario
    de Bono, Maxwell G. Heiman, and Jonathan T. Pierce. “Long-Term Activity Drives
    Dendritic Branch Elaboration of a C. Elegans Sensory Neuron.” <i>Developmental
    Biology</i>. Elsevier, 2020. <a href="https://doi.org/10.1016/j.ydbio.2020.01.005">https://doi.org/10.1016/j.ydbio.2020.01.005</a>.
  ieee: J. A. Cohn <i>et al.</i>, “Long-term activity drives dendritic branch elaboration
    of a C. elegans sensory neuron,” <i>Developmental Biology</i>, vol. 461, no. 1.
    Elsevier, pp. 66–74, 2020.
  ista: Cohn JA, Cebul ER, Valperga G, Brose L, de Bono M, Heiman MG, Pierce JT. 2020.
    Long-term activity drives dendritic branch elaboration of a C. elegans sensory
    neuron. Developmental Biology. 461(1), 66–74.
  mla: Cohn, Jesse A., et al. “Long-Term Activity Drives Dendritic Branch Elaboration
    of a C. Elegans Sensory Neuron.” <i>Developmental Biology</i>, vol. 461, no. 1,
    Elsevier, 2020, pp. 66–74, doi:<a href="https://doi.org/10.1016/j.ydbio.2020.01.005">10.1016/j.ydbio.2020.01.005</a>.
  short: J.A. Cohn, E.R. Cebul, G. Valperga, L. Brose, M. de Bono, M.G. Heiman, J.T.
    Pierce, Developmental Biology 461 (2020) 66–74.
date_created: 2020-02-28T10:38:32Z
date_published: 2020-05-01T00:00:00Z
date_updated: 2021-01-12T08:14:06Z
day: '01'
doi: 10.1016/j.ydbio.2020.01.005
extern: '1'
intvolume: '       461'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1101/685339
month: '05'
oa: 1
oa_version: Preprint
page: 66-74
publication: Developmental Biology
publication_identifier:
  issn:
  - 0012-1606
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Long-term activity drives dendritic branch elaboration of a C. elegans sensory
  neuron
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 461
year: '2020'
...
---
_id: '7546'
abstract:
- lang: eng
  text: The extent to which behavior is shaped by experience varies between individuals.
    Genetic differences contribute to this variation, but the neural mechanisms are
    not understood. Here, we dissect natural variation in the behavioral flexibility
    of two Caenorhabditis elegans wild strains. In one strain, a memory of exposure
    to 21% O2 suppresses CO2-evoked locomotory arousal; in the other, CO2 evokes arousal
    regardless of previous O2 experience. We map that variation to a polymorphic dendritic
    scaffold protein, ARCP-1, expressed in sensory neurons. ARCP-1 binds the Ca2+-dependent
    phosphodiesterase PDE-1 and co-localizes PDE-1 with molecular sensors for CO2
    at dendritic ends. Reducing ARCP-1 or PDE-1 activity promotes CO2 escape by altering
    neuropeptide expression in the BAG CO2 sensors. Variation in ARCP-1 alters behavioral
    plasticity in multiple paradigms. Our findings are reminiscent of genetic accommodation,
    an evolutionary process by which phenotypic flexibility in response to environmental
    variation is reset by genetic change.
article_processing_charge: No
article_type: original
author:
- first_name: Isabel
  full_name: Beets, Isabel
  last_name: Beets
- first_name: Gaotian
  full_name: Zhang, Gaotian
  last_name: Zhang
- first_name: Lorenz A.
  full_name: Fenk, Lorenz A.
  last_name: Fenk
- first_name: Changchun
  full_name: Chen, Changchun
  last_name: Chen
- first_name: Geoffrey M.
  full_name: Nelson, Geoffrey M.
  last_name: Nelson
- first_name: Marie-Anne
  full_name: Félix, Marie-Anne
  last_name: Félix
- first_name: Mario
  full_name: de Bono, Mario
  id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
  last_name: de Bono
  orcid: 0000-0001-8347-0443
citation:
  ama: Beets I, Zhang G, Fenk LA, et al. Natural variation in a dendritic scaffold
    protein remodels experience-dependent plasticity by altering neuropeptide expression.
    <i>Neuron</i>. 2020;105(1):106-121.e10. doi:<a href="https://doi.org/10.1016/j.neuron.2019.10.001">10.1016/j.neuron.2019.10.001</a>
  apa: Beets, I., Zhang, G., Fenk, L. A., Chen, C., Nelson, G. M., Félix, M.-A., &#38;
    de Bono, M. (2020). Natural variation in a dendritic scaffold protein remodels
    experience-dependent plasticity by altering neuropeptide expression. <i>Neuron</i>.
    Cell Press. <a href="https://doi.org/10.1016/j.neuron.2019.10.001">https://doi.org/10.1016/j.neuron.2019.10.001</a>
  chicago: Beets, Isabel, Gaotian Zhang, Lorenz A. Fenk, Changchun Chen, Geoffrey
    M. Nelson, Marie-Anne Félix, and Mario de Bono. “Natural Variation in a Dendritic
    Scaffold Protein Remodels Experience-Dependent Plasticity by Altering Neuropeptide
    Expression.” <i>Neuron</i>. Cell Press, 2020. <a href="https://doi.org/10.1016/j.neuron.2019.10.001">https://doi.org/10.1016/j.neuron.2019.10.001</a>.
  ieee: I. Beets <i>et al.</i>, “Natural variation in a dendritic scaffold protein
    remodels experience-dependent plasticity by altering neuropeptide expression,”
    <i>Neuron</i>, vol. 105, no. 1. Cell Press, p. 106–121.e10, 2020.
  ista: Beets I, Zhang G, Fenk LA, Chen C, Nelson GM, Félix M-A, de Bono M. 2020.
    Natural variation in a dendritic scaffold protein remodels experience-dependent
    plasticity by altering neuropeptide expression. Neuron. 105(1), 106–121.e10.
  mla: Beets, Isabel, et al. “Natural Variation in a Dendritic Scaffold Protein Remodels
    Experience-Dependent Plasticity by Altering Neuropeptide Expression.” <i>Neuron</i>,
    vol. 105, no. 1, Cell Press, 2020, p. 106–121.e10, doi:<a href="https://doi.org/10.1016/j.neuron.2019.10.001">10.1016/j.neuron.2019.10.001</a>.
  short: I. Beets, G. Zhang, L.A. Fenk, C. Chen, G.M. Nelson, M.-A. Félix, M. de Bono,
    Neuron 105 (2020) 106–121.e10.
corr_author: '1'
date_created: 2020-02-28T10:43:39Z
date_published: 2020-01-08T00:00:00Z
date_updated: 2024-10-09T20:59:20Z
day: '08'
ddc:
- '570'
department:
- _id: MaDe
doi: 10.1016/j.neuron.2019.10.001
external_id:
  isi:
  - '000507341300012'
  pmid:
  - '31757604'
file:
- access_level: open_access
  checksum: 799bfd297a008753a688b30d3958fa48
  content_type: application/pdf
  creator: dernst
  date_created: 2020-03-02T15:43:57Z
  date_updated: 2020-07-14T12:48:00Z
  file_id: '7558'
  file_name: 2020_Neuron_Beets.pdf
  file_size: 3294066
  relation: main_file
file_date_updated: 2020-07-14T12:48:00Z
has_accepted_license: '1'
intvolume: '       105'
isi: 1
issue: '1'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '01'
oa: 1
oa_version: Published Version
page: 106-121.e10
pmid: 1
publication: Neuron
publication_identifier:
  issn:
  - 0896-6273
publication_status: published
publisher: Cell Press
quality_controlled: '1'
status: public
title: Natural variation in a dendritic scaffold protein remodels experience-dependent
  plasticity by altering neuropeptide expression
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 105
year: '2020'
...
---
_id: '7554'
abstract:
- lang: eng
  text: Slicing a Voronoi tessellation in ${R}^n$ with a $k$-plane gives a $k$-dimensional
    weighted Voronoi tessellation, also known as a power diagram or Laguerre tessellation.
    Mapping every simplex of the dual weighted Delaunay mosaic to the radius of the
    smallest empty circumscribed sphere whose center lies in the $k$-plane gives a
    generalized discrete Morse function. Assuming the Voronoi tessellation is generated
    by a Poisson point process in ${R}^n$, we study the expected number of simplices
    in the $k$-dimensional weighted Delaunay mosaic as well as the expected number
    of intervals of the Morse function, both as functions of a radius threshold. As
    a by-product, we obtain a new proof for the expected number of connected components
    (clumps) in a line section of a circular Boolean model in ${R}^n$.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Anton
  full_name: Nikitenko, Anton
  id: 3E4FF1BA-F248-11E8-B48F-1D18A9856A87
  last_name: Nikitenko
  orcid: 0000-0002-0659-3201
citation:
  ama: Edelsbrunner H, Nikitenko A. Weighted Poisson–Delaunay mosaics. <i>Theory of
    Probability and its Applications</i>. 2020;64(4):595-614. doi:<a href="https://doi.org/10.1137/S0040585X97T989726">10.1137/S0040585X97T989726</a>
  apa: Edelsbrunner, H., &#38; Nikitenko, A. (2020). Weighted Poisson–Delaunay mosaics.
    <i>Theory of Probability and Its Applications</i>. SIAM. <a href="https://doi.org/10.1137/S0040585X97T989726">https://doi.org/10.1137/S0040585X97T989726</a>
  chicago: Edelsbrunner, Herbert, and Anton Nikitenko. “Weighted Poisson–Delaunay
    Mosaics.” <i>Theory of Probability and Its Applications</i>. SIAM, 2020. <a href="https://doi.org/10.1137/S0040585X97T989726">https://doi.org/10.1137/S0040585X97T989726</a>.
  ieee: H. Edelsbrunner and A. Nikitenko, “Weighted Poisson–Delaunay mosaics,” <i>Theory
    of Probability and its Applications</i>, vol. 64, no. 4. SIAM, pp. 595–614, 2020.
  ista: Edelsbrunner H, Nikitenko A. 2020. Weighted Poisson–Delaunay mosaics. Theory
    of Probability and its Applications. 64(4), 595–614.
  mla: Edelsbrunner, Herbert, and Anton Nikitenko. “Weighted Poisson–Delaunay Mosaics.”
    <i>Theory of Probability and Its Applications</i>, vol. 64, no. 4, SIAM, 2020,
    pp. 595–614, doi:<a href="https://doi.org/10.1137/S0040585X97T989726">10.1137/S0040585X97T989726</a>.
  short: H. Edelsbrunner, A. Nikitenko, Theory of Probability and Its Applications
    64 (2020) 595–614.
date_created: 2020-03-01T23:00:39Z
date_published: 2020-02-13T00:00:00Z
date_updated: 2025-07-10T11:54:44Z
day: '13'
department:
- _id: HeEd
doi: 10.1137/S0040585X97T989726
ec_funded: 1
external_id:
  arxiv:
  - '1705.08735'
  isi:
  - '000551393100007'
intvolume: '        64'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1705.08735
month: '02'
oa: 1
oa_version: Preprint
page: 595-614
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
publication: Theory of Probability and its Applications
publication_identifier:
  eissn:
  - 1095-7219
  issn:
  - 0040-585X
publication_status: published
publisher: SIAM
quality_controlled: '1'
scopus_import: '1'
status: public
title: Weighted Poisson–Delaunay mosaics
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 64
year: '2020'
...
---
_id: '7567'
abstract:
- lang: eng
  text: Coxeter triangulations are triangulations of Euclidean space based on a single
    simplex. By this we mean that given an individual simplex we can recover the entire
    triangulation of Euclidean space by inductively reflecting in the faces of the
    simplex. In this paper we establish that the quality of the simplices in all Coxeter
    triangulations is O(1/d−−√) of the quality of regular simplex. We further investigate
    the Delaunay property for these triangulations. Moreover, we consider an extension
    of the Delaunay property, namely protection, which is a measure of non-degeneracy
    of a Delaunay triangulation. In particular, one family of Coxeter triangulations
    achieves the protection O(1/d2). We conjecture that both bounds are optimal for
    triangulations in Euclidean space.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Aruni
  full_name: Choudhary, Aruni
  last_name: Choudhary
- first_name: Siargey
  full_name: Kachanovich, Siargey
  last_name: Kachanovich
- first_name: Mathijs
  full_name: Wintraecken, Mathijs
  id: 307CFBC8-F248-11E8-B48F-1D18A9856A87
  last_name: Wintraecken
  orcid: 0000-0002-7472-2220
citation:
  ama: Choudhary A, Kachanovich S, Wintraecken M. Coxeter triangulations have good
    quality. <i>Mathematics in Computer Science</i>. 2020;14:141-176. doi:<a href="https://doi.org/10.1007/s11786-020-00461-5">10.1007/s11786-020-00461-5</a>
  apa: Choudhary, A., Kachanovich, S., &#38; Wintraecken, M. (2020). Coxeter triangulations
    have good quality. <i>Mathematics in Computer Science</i>. Springer Nature. <a
    href="https://doi.org/10.1007/s11786-020-00461-5">https://doi.org/10.1007/s11786-020-00461-5</a>
  chicago: Choudhary, Aruni, Siargey Kachanovich, and Mathijs Wintraecken. “Coxeter
    Triangulations Have Good Quality.” <i>Mathematics in Computer Science</i>. Springer
    Nature, 2020. <a href="https://doi.org/10.1007/s11786-020-00461-5">https://doi.org/10.1007/s11786-020-00461-5</a>.
  ieee: A. Choudhary, S. Kachanovich, and M. Wintraecken, “Coxeter triangulations
    have good quality,” <i>Mathematics in Computer Science</i>, vol. 14. Springer
    Nature, pp. 141–176, 2020.
  ista: Choudhary A, Kachanovich S, Wintraecken M. 2020. Coxeter triangulations have
    good quality. Mathematics in Computer Science. 14, 141–176.
  mla: Choudhary, Aruni, et al. “Coxeter Triangulations Have Good Quality.” <i>Mathematics
    in Computer Science</i>, vol. 14, Springer Nature, 2020, pp. 141–76, doi:<a href="https://doi.org/10.1007/s11786-020-00461-5">10.1007/s11786-020-00461-5</a>.
  short: A. Choudhary, S. Kachanovich, M. Wintraecken, Mathematics in Computer Science
    14 (2020) 141–176.
corr_author: '1'
date_created: 2020-03-05T13:30:18Z
date_published: 2020-03-01T00:00:00Z
date_updated: 2025-04-14T07:44:03Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.1007/s11786-020-00461-5
ec_funded: 1
file:
- access_level: open_access
  checksum: 1d145f3ab50ccee735983cb89236e609
  content_type: application/pdf
  creator: dernst
  date_created: 2020-11-20T10:18:02Z
  date_updated: 2020-11-20T10:18:02Z
  file_id: '8783'
  file_name: 2020_MathCompScie_Choudhary.pdf
  file_size: 872275
  relation: main_file
  success: 1
file_date_updated: 2020-11-20T10:18:02Z
has_accepted_license: '1'
intvolume: '        14'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 141-176
project:
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: Mathematics in Computer Science
publication_identifier:
  eissn:
  - 1661-8289
  issn:
  - 1661-8270
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Coxeter triangulations have good quality
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2020'
...
---
_id: '7570'
abstract:
- lang: eng
  text: The relaxation of few-body quantum systems can strongly depend on the initial
    state when the system’s semiclassical phase space is mixed; i.e., regions of chaotic
    motion coexist with regular islands. In recent years, there has been much effort
    to understand the process of thermalization in strongly interacting quantum systems
    that often lack an obvious semiclassical limit. The time-dependent variational
    principle (TDVP) allows one to systematically derive an effective classical (nonlinear)
    dynamical system by projecting unitary many-body dynamics onto a manifold of weakly
    entangled variational states. We demonstrate that such dynamical systems generally
    possess mixed phase space. When TDVP errors are small, the mixed phase space leaves
    a footprint on the exact dynamics of the quantum model. For example, when the
    system is initialized in a state belonging to a stable periodic orbit or the surrounding
    regular region, it exhibits persistent many-body quantum revivals. As a proof
    of principle, we identify new types of “quantum many-body scars,” i.e., initial
    states that lead to long-time oscillations in a model of interacting Rydberg atoms
    in one and two dimensions. Intriguingly, the initial states that give rise to
    most robust revivals are typically entangled states. On the other hand, even when
    TDVP errors are large, as in the thermalizing tilted-field Ising model, initializing
    the system in a regular region of phase space leads to a surprising slowdown of
    thermalization. Our work establishes TDVP as a method for identifying interacting
    quantum systems with anomalous dynamics in arbitrary dimensions. Moreover, the
    mixed phase space classical variational equations allow one to find slowly thermalizing
    initial conditions in interacting models. Our results shed light on a link between
    classical and quantum chaos, pointing toward possible extensions of the classical
    Kolmogorov-Arnold-Moser theorem to quantum systems.
article_number: '011055'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Alexios
  full_name: Michailidis, Alexios
  id: 36EBAD38-F248-11E8-B48F-1D18A9856A87
  last_name: Michailidis
  orcid: 0000-0002-8443-1064
- first_name: C. J.
  full_name: Turner, C. J.
  last_name: Turner
- first_name: Z.
  full_name: Papić, Z.
  last_name: Papić
- first_name: D. A.
  full_name: Abanin, D. A.
  last_name: Abanin
- first_name: Maksym
  full_name: Serbyn, Maksym
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
citation:
  ama: Michailidis A, Turner CJ, Papić Z, Abanin DA, Serbyn M. Slow quantum thermalization
    and many-body revivals from mixed phase space. <i>Physical Review X</i>. 2020;10(1).
    doi:<a href="https://doi.org/10.1103/physrevx.10.011055">10.1103/physrevx.10.011055</a>
  apa: Michailidis, A., Turner, C. J., Papić, Z., Abanin, D. A., &#38; Serbyn, M.
    (2020). Slow quantum thermalization and many-body revivals from mixed phase space.
    <i>Physical Review X</i>. American Physical Society. <a href="https://doi.org/10.1103/physrevx.10.011055">https://doi.org/10.1103/physrevx.10.011055</a>
  chicago: Michailidis, Alexios, C. J. Turner, Z. Papić, D. A. Abanin, and Maksym
    Serbyn. “Slow Quantum Thermalization and Many-Body Revivals from Mixed Phase Space.”
    <i>Physical Review X</i>. American Physical Society, 2020. <a href="https://doi.org/10.1103/physrevx.10.011055">https://doi.org/10.1103/physrevx.10.011055</a>.
  ieee: A. Michailidis, C. J. Turner, Z. Papić, D. A. Abanin, and M. Serbyn, “Slow
    quantum thermalization and many-body revivals from mixed phase space,” <i>Physical
    Review X</i>, vol. 10, no. 1. American Physical Society, 2020.
  ista: Michailidis A, Turner CJ, Papić Z, Abanin DA, Serbyn M. 2020. Slow quantum
    thermalization and many-body revivals from mixed phase space. Physical Review
    X. 10(1), 011055.
  mla: Michailidis, Alexios, et al. “Slow Quantum Thermalization and Many-Body Revivals
    from Mixed Phase Space.” <i>Physical Review X</i>, vol. 10, no. 1, 011055, American
    Physical Society, 2020, doi:<a href="https://doi.org/10.1103/physrevx.10.011055">10.1103/physrevx.10.011055</a>.
  short: A. Michailidis, C.J. Turner, Z. Papić, D.A. Abanin, M. Serbyn, Physical Review
    X 10 (2020).
date_created: 2020-03-08T18:02:01Z
date_published: 2020-03-04T00:00:00Z
date_updated: 2023-08-18T07:01:07Z
day: '04'
ddc:
- '530'
department:
- _id: MaSe
doi: 10.1103/physrevx.10.011055
external_id:
  arxiv:
  - '1905.08564'
  isi:
  - '000517969300001'
file:
- access_level: open_access
  checksum: 4b3f2c13873d35230173c73d0e11c408
  content_type: application/pdf
  creator: dernst
  date_created: 2020-03-12T12:13:07Z
  date_updated: 2020-07-14T12:48:00Z
  file_id: '7581'
  file_name: 2020_PhysicalReviewX_Michailidis.pdf
  file_size: 17828638
  relation: main_file
file_date_updated: 2020-07-14T12:48:00Z
has_accepted_license: '1'
intvolume: '        10'
isi: 1
issue: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication: Physical Review X
publication_identifier:
  issn:
  - 2160-3308
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/classical-physics-helps-predict-fate-of-interacting-quantum-systems/
scopus_import: '1'
status: public
title: Slow quantum thermalization and many-body revivals from mixed phase space
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 10
year: '2020'
...
---
_id: '7591'
abstract:
- lang: eng
  text: Rechargeable Li–O2 batteries have gathered enormous attention in the research
    community for having amongst the highest theoretical energy storage. Realizing
    the promise, even in part, in practice could produce a device that stores significantly
    more energy than other rechargeable batteries. Fundamental understanding of the
    reaction mechanisms is now realized to be key to overcome many challenges. We
    give a critical overview of the current understanding of the chemistry underpinning
    the Li–O2 cell with focus on the cathode and give a perspective on the most important
    research needs. Since performance and reversibility are often grossly misunderstood,
    we put emphasis on realistic performances to be achieved by Li–O2 cells and on
    means to identify reversibility. Parasitic chemistry is the foremost barrier for
    reversible cycling and now realized to be predominantly caused by singlet oxygen
    rather than by the previously thought superoxide or peroxide. This finding profoundly
    affects any other area of research from reaction mechanisms, to electrolytes and
    catalysts and dominates future research needs.
article_processing_charge: No
author:
- first_name: Yann K.
  full_name: Petit, Yann K.
  last_name: Petit
- first_name: Eléonore
  full_name: Mourad, Eléonore
  last_name: Mourad
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
citation:
  ama: 'Petit YK, Mourad E, Freunberger SA. Lithium–Oxygen batteries. In: <i>Encyclopedia
    of Electrochemistry</i>. Wiley; 2020:1-42. doi:<a href="https://doi.org/10.1002/9783527610426.bard110017">10.1002/9783527610426.bard110017</a>'
  apa: Petit, Y. K., Mourad, E., &#38; Freunberger, S. A. (2020). Lithium–Oxygen batteries.
    In <i>Encyclopedia of Electrochemistry</i> (pp. 1–42). Wiley. <a href="https://doi.org/10.1002/9783527610426.bard110017">https://doi.org/10.1002/9783527610426.bard110017</a>
  chicago: Petit, Yann K., Eléonore Mourad, and Stefan Alexander Freunberger. “Lithium–Oxygen
    Batteries.” In <i>Encyclopedia of Electrochemistry</i>, 1–42. Wiley, 2020. <a
    href="https://doi.org/10.1002/9783527610426.bard110017">https://doi.org/10.1002/9783527610426.bard110017</a>.
  ieee: Y. K. Petit, E. Mourad, and S. A. Freunberger, “Lithium–Oxygen batteries,”
    in <i>Encyclopedia of Electrochemistry</i>, Wiley, 2020, pp. 1–42.
  ista: 'Petit YK, Mourad E, Freunberger SA. 2020.Lithium–Oxygen batteries. In: Encyclopedia
    of Electrochemistry. , 1–42.'
  mla: Petit, Yann K., et al. “Lithium–Oxygen Batteries.” <i>Encyclopedia of Electrochemistry</i>,
    Wiley, 2020, pp. 1–42, doi:<a href="https://doi.org/10.1002/9783527610426.bard110017">10.1002/9783527610426.bard110017</a>.
  short: Y.K. Petit, E. Mourad, S.A. Freunberger, in:, Encyclopedia of Electrochemistry,
    Wiley, 2020, pp. 1–42.
date_created: 2020-03-19T15:54:34Z
date_published: 2020-03-18T00:00:00Z
date_updated: 2021-01-12T08:14:22Z
day: '18'
doi: 10.1002/9783527610426.bard110017
extern: '1'
language:
- iso: eng
month: '03'
oa_version: None
page: 1-42
publication: Encyclopedia of Electrochemistry
publication_identifier:
  eisbn:
  - '9783527610426'
  isbn:
  - '9783527302505'
publication_status: published
publisher: Wiley
quality_controlled: '1'
status: public
title: Lithium–Oxygen batteries
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '7593'
abstract:
- lang: eng
  text: Heterozygous loss of human PAFAH1B1 (coding for LIS1) results in the disruption
    of neurogenesis and neuronal migration via dysregulation of microtubule (MT) stability
    and dynein motor function/localization that alters mitotic spindle orientation,
    chromosomal segregation, and nuclear migration. Recently, human induced pluripotent
    stem cell (iPSC) models revealed an important role for LIS1 in controlling the
    length of terminal cell divisions of outer radial glial (oRG) progenitors, suggesting
    cellular functions of LIS1 in regulating neural progenitor cell (NPC) daughter
    cell separation. Here we examined the late mitotic stages NPCs in vivo and mouse
    embryonic fibroblasts (MEFs) in vitro from Pafah1b1-deficient mutants. Pafah1b1-deficient
    neocortical NPCs and MEFs similarly exhibited cleavage plane displacement with
    mislocalization of furrow-associated markers, associated with actomyosin dysfunction
    and cell membrane hyper-contractility. Thus, it suggests LIS1 acts as a key molecular
    link connecting MTs/dynein and actomyosin, ensuring that cell membrane contractility
    is tightly controlled to execute proper daughter cell separation.
article_number: '51512'
article_processing_charge: No
article_type: original
author:
- first_name: Hyang Mi
  full_name: Moon, Hyang Mi
  last_name: Moon
- first_name: Simon
  full_name: Hippenmeyer, Simon
  id: 37B36620-F248-11E8-B48F-1D18A9856A87
  last_name: Hippenmeyer
  orcid: 0000-0003-2279-1061
- first_name: Liqun
  full_name: Luo, Liqun
  last_name: Luo
- first_name: Anthony
  full_name: Wynshaw-Boris, Anthony
  last_name: Wynshaw-Boris
citation:
  ama: Moon HM, Hippenmeyer S, Luo L, Wynshaw-Boris A. LIS1 determines cleavage plane
    positioning by regulating actomyosin-mediated cell membrane contractility. <i>eLife</i>.
    2020;9. doi:<a href="https://doi.org/10.7554/elife.51512">10.7554/elife.51512</a>
  apa: Moon, H. M., Hippenmeyer, S., Luo, L., &#38; Wynshaw-Boris, A. (2020). LIS1
    determines cleavage plane positioning by regulating actomyosin-mediated cell membrane
    contractility. <i>ELife</i>. eLife Sciences Publications. <a href="https://doi.org/10.7554/elife.51512">https://doi.org/10.7554/elife.51512</a>
  chicago: Moon, Hyang Mi, Simon Hippenmeyer, Liqun Luo, and Anthony Wynshaw-Boris.
    “LIS1 Determines Cleavage Plane Positioning by Regulating Actomyosin-Mediated
    Cell Membrane Contractility.” <i>ELife</i>. eLife Sciences Publications, 2020.
    <a href="https://doi.org/10.7554/elife.51512">https://doi.org/10.7554/elife.51512</a>.
  ieee: H. M. Moon, S. Hippenmeyer, L. Luo, and A. Wynshaw-Boris, “LIS1 determines
    cleavage plane positioning by regulating actomyosin-mediated cell membrane contractility,”
    <i>eLife</i>, vol. 9. eLife Sciences Publications, 2020.
  ista: Moon HM, Hippenmeyer S, Luo L, Wynshaw-Boris A. 2020. LIS1 determines cleavage
    plane positioning by regulating actomyosin-mediated cell membrane contractility.
    eLife. 9, 51512.
  mla: Moon, Hyang Mi, et al. “LIS1 Determines Cleavage Plane Positioning by Regulating
    Actomyosin-Mediated Cell Membrane Contractility.” <i>ELife</i>, vol. 9, 51512,
    eLife Sciences Publications, 2020, doi:<a href="https://doi.org/10.7554/elife.51512">10.7554/elife.51512</a>.
  short: H.M. Moon, S. Hippenmeyer, L. Luo, A. Wynshaw-Boris, ELife 9 (2020).
date_created: 2020-03-20T13:16:41Z
date_published: 2020-03-11T00:00:00Z
date_updated: 2023-08-18T07:06:31Z
day: '11'
ddc:
- '570'
department:
- _id: SiHi
doi: 10.7554/elife.51512
external_id:
  isi:
  - '000522835800001'
  pmid:
  - '32159512'
file:
- access_level: open_access
  checksum: 396ceb2dd10b102ef4e699666b9342c3
  content_type: application/pdf
  creator: dernst
  date_created: 2020-09-24T07:03:20Z
  date_updated: 2020-09-24T07:03:20Z
  file_id: '8567'
  file_name: 2020_elife_Moon.pdf
  file_size: 15089438
  relation: main_file
  success: 1
file_date_updated: 2020-09-24T07:03:20Z
has_accepted_license: '1'
intvolume: '         9'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1101/751958
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: eLife
publication_identifier:
  issn:
  - 2050-084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
scopus_import: '1'
status: public
title: LIS1 determines cleavage plane positioning by regulating actomyosin-mediated
  cell membrane contractility
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 9
year: '2020'
...
---
_id: '7594'
abstract:
- lang: eng
  text: The concept of the entanglement between spin and orbital degrees of freedom
    plays a crucial role in our understanding of various phases and exotic ground
    states in a broad class of materials, including orbitally ordered materials and
    spin liquids. We investigate how the spin-orbital entanglement in a Mott insulator
    depends on the value of the spin-orbit coupling of the relativistic origin. To
    this end, we numerically diagonalize a one-dimensional spin-orbital model with
    Kugel-Khomskii exchange interactions between spins and orbitals on different sites
    supplemented by the on-site spin-orbit coupling. In the regime of small spin-orbit
    coupling with regard to the spin-orbital exchange, the ground state to a large
    extent resembles the one obtained in the limit of vanishing spin-orbit coupling.
    On the other hand, for large spin-orbit coupling the ground state can, depending
    on the model parameters, either still show negligible spin-orbital entanglement
    or evolve to a highly spin-orbitally-entangled phase with completely distinct
    properties that are described by an effective XXZ model. The presented results
    suggest that (i) the spin-orbital entanglement may be induced by large on-site
    spin-orbit coupling, as found in the 5d transition metal oxides, such as the iridates;
    (ii) for Mott insulators with weak spin-orbit coupling of Ising type, such as,
    e.g., the alkali hyperoxides, the effects of the spin-orbit coupling on the ground
    state can, in the first order of perturbation theory, be neglected.
article_number: '013353'
article_processing_charge: No
article_type: original
author:
- first_name: Dorota
  full_name: Gotfryd, Dorota
  last_name: Gotfryd
- first_name: Ekaterina
  full_name: Paerschke, Ekaterina
  id: 8275014E-6063-11E9-9B7F-6338E6697425
  last_name: Paerschke
  orcid: 0000-0003-0853-8182
- first_name: Jiri
  full_name: Chaloupka, Jiri
  last_name: Chaloupka
- first_name: Andrzej M.
  full_name: Oles, Andrzej M.
  last_name: Oles
- first_name: Krzysztof
  full_name: Wohlfeld, Krzysztof
  last_name: Wohlfeld
citation:
  ama: Gotfryd D, Paerschke E, Chaloupka J, Oles AM, Wohlfeld K. How spin-orbital
    entanglement depends on the spin-orbit coupling in a Mott insulator. <i>Physical
    Review Research</i>. 2020;2(1). doi:<a href="https://doi.org/10.1103/PhysRevResearch.2.013353">10.1103/PhysRevResearch.2.013353</a>
  apa: Gotfryd, D., Paerschke, E., Chaloupka, J., Oles, A. M., &#38; Wohlfeld, K.
    (2020). How spin-orbital entanglement depends on the spin-orbit coupling in a
    Mott insulator. <i>Physical Review Research</i>. American Physical Society. <a
    href="https://doi.org/10.1103/PhysRevResearch.2.013353">https://doi.org/10.1103/PhysRevResearch.2.013353</a>
  chicago: Gotfryd, Dorota, Ekaterina Paerschke, Jiri Chaloupka, Andrzej M. Oles,
    and Krzysztof Wohlfeld. “How Spin-Orbital Entanglement Depends on the Spin-Orbit
    Coupling in a Mott Insulator.” <i>Physical Review Research</i>. American Physical
    Society, 2020. <a href="https://doi.org/10.1103/PhysRevResearch.2.013353">https://doi.org/10.1103/PhysRevResearch.2.013353</a>.
  ieee: D. Gotfryd, E. Paerschke, J. Chaloupka, A. M. Oles, and K. Wohlfeld, “How
    spin-orbital entanglement depends on the spin-orbit coupling in a Mott insulator,”
    <i>Physical Review Research</i>, vol. 2, no. 1. American Physical Society, 2020.
  ista: Gotfryd D, Paerschke E, Chaloupka J, Oles AM, Wohlfeld K. 2020. How spin-orbital
    entanglement depends on the spin-orbit coupling in a Mott insulator. Physical
    Review Research. 2(1), 013353.
  mla: Gotfryd, Dorota, et al. “How Spin-Orbital Entanglement Depends on the Spin-Orbit
    Coupling in a Mott Insulator.” <i>Physical Review Research</i>, vol. 2, no. 1,
    013353, American Physical Society, 2020, doi:<a href="https://doi.org/10.1103/PhysRevResearch.2.013353">10.1103/PhysRevResearch.2.013353</a>.
  short: D. Gotfryd, E. Paerschke, J. Chaloupka, A.M. Oles, K. Wohlfeld, Physical
    Review Research 2 (2020).
date_created: 2020-03-20T15:21:10Z
date_published: 2020-03-20T00:00:00Z
date_updated: 2024-10-21T06:02:21Z
day: '20'
ddc:
- '530'
department:
- _id: MiLe
doi: 10.1103/PhysRevResearch.2.013353
ec_funded: 1
file:
- access_level: open_access
  checksum: 1be551fd5f5583635076017d7391ffdc
  content_type: application/pdf
  creator: dernst
  date_created: 2020-03-23T10:18:38Z
  date_updated: 2020-07-14T12:48:00Z
  file_id: '7610'
  file_name: 2020_PhysRevResearch_Gotfryd.pdf
  file_size: 1436735
  relation: main_file
file_date_updated: 2020-07-14T12:48:00Z
has_accepted_license: '1'
intvolume: '         2'
issue: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: Physical Review Research
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: How spin-orbital entanglement depends on the spin-orbit coupling in a Mott
  insulator
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2020'
...
---
_id: '7601'
abstract:
- lang: eng
  text: Plasmodesmata (PD) are crucial structures for intercellular communication
    in multicellular plants with remorins being their crucial plant-specific structural
    and functional constituents. The PD biogenesis is an intriguing but poorly understood
    process. By expressing an Arabidopsis remorin protein in mammalian cells, we have
    reconstituted a PD-like filamentous structure, termed remorin filament (RF), connecting
    neighboring cells physically and physiologically. Notably, RFs are capable of
    transporting macromolecules intercellularly, in a way similar to plant PD. With
    further super-resolution microscopic analysis and biochemical characterization,
    we found that RFs are also composed of actin filaments, forming the core skeleton
    structure, aligned with the remorin protein. This unique heterologous filamentous
    structure might explain the molecular mechanism for remorin function as well as
    PD construction. Furthermore, remorin protein exhibits a specific distribution
    manner in the plasma membrane in mammalian cells, representing a lipid nanodomain,
    depending on its lipid modification status. Our studies not only provide crucial
    insights into the mechanism of PD biogenesis, but also uncovers unsuspected fundamental
    mechanistic and evolutionary links between intercellular communication systems
    of plants and animals.
article_processing_charge: No
author:
- first_name: Zhuang
  full_name: Wei, Zhuang
  last_name: Wei
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: Tao
  full_name: Liu, Tao
  last_name: Liu
- first_name: Yuan
  full_name: Wu, Yuan
  last_name: Wu
- first_name: Ji-Gang
  full_name: Lei, Ji-Gang
  last_name: Lei
- first_name: ZhengJun
  full_name: Chen, ZhengJun
  last_name: Chen
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Hong-Wei
  full_name: Xue, Hong-Wei
  last_name: Xue
- first_name: Kan
  full_name: Liao, Kan
  last_name: Liao
citation:
  ama: Wei Z, Tan S, Liu T, et al. Plasmodesmata-like intercellular connections by
    plant remorin in animal cells. <i>bioRxiv</i>. 2020. doi:<a href="https://doi.org/10.1101/791137">10.1101/791137</a>
  apa: Wei, Z., Tan, S., Liu, T., Wu, Y., Lei, J.-G., Chen, Z., … Liao, K. (2020).
    Plasmodesmata-like intercellular connections by plant remorin in animal cells.
    <i>bioRxiv</i>. Cold Spring Harbor Laboratory. <a href="https://doi.org/10.1101/791137">https://doi.org/10.1101/791137</a>
  chicago: Wei, Zhuang, Shutang Tan, Tao Liu, Yuan Wu, Ji-Gang Lei, ZhengJun Chen,
    Jiří Friml, Hong-Wei Xue, and Kan Liao. “Plasmodesmata-like Intercellular Connections
    by Plant Remorin in Animal Cells.” <i>BioRxiv</i>. Cold Spring Harbor Laboratory,
    2020. <a href="https://doi.org/10.1101/791137">https://doi.org/10.1101/791137</a>.
  ieee: Z. Wei <i>et al.</i>, “Plasmodesmata-like intercellular connections by plant
    remorin in animal cells,” <i>bioRxiv</i>. Cold Spring Harbor Laboratory, 2020.
  ista: Wei Z, Tan S, Liu T, Wu Y, Lei J-G, Chen Z, Friml J, Xue H-W, Liao K. 2020.
    Plasmodesmata-like intercellular connections by plant remorin in animal cells.
    bioRxiv, <a href="https://doi.org/10.1101/791137">10.1101/791137</a>.
  mla: Wei, Zhuang, et al. “Plasmodesmata-like Intercellular Connections by Plant
    Remorin in Animal Cells.” <i>BioRxiv</i>, Cold Spring Harbor Laboratory, 2020,
    doi:<a href="https://doi.org/10.1101/791137">10.1101/791137</a>.
  short: Z. Wei, S. Tan, T. Liu, Y. Wu, J.-G. Lei, Z. Chen, J. Friml, H.-W. Xue, K.
    Liao, BioRxiv (2020).
date_created: 2020-03-21T16:34:42Z
date_published: 2020-02-19T00:00:00Z
date_updated: 2021-01-12T08:14:26Z
day: '19'
department:
- _id: JiFr
doi: 10.1101/791137
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1101/791137
month: '02'
oa: 1
oa_version: Preprint
page: '22'
publication: bioRxiv
publication_status: published
publisher: Cold Spring Harbor Laboratory
status: public
title: Plasmodesmata-like intercellular connections by plant remorin in animal cells
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '7603'
abstract:
- lang: eng
  text: Plants are exposed to a variety of abiotic and biotic stresses that may result
    in DNA damage. Endogenous processes - such as DNA replication, DNA recombination,
    respiration, or photosynthesis - are also a threat to DNA integrity. It is therefore
    essential to understand the strategies plants have developed for DNA damage detection,
    signaling, and repair. Alternative splicing (AS) is a key post-transcriptional
    process with a role in regulation of gene expression. Recent studies demonstrate
    that the majority of intron-containing genes in plants are alternatively spliced,
    highlighting the importance of AS in plant development and stress response. Not
    only does AS ensure a versatile proteome and influence the abundance and availability
    of proteins greatly, it has also emerged as an important player in the DNA damage
    response (DDR) in animals. Despite extensive studies of DDR carried out in plants,
    its regulation at the level of AS has not been comprehensively addressed. Here,
    we provide some insights into the interplay between AS and DDR in plants.
article_number: '91'
article_processing_charge: No
article_type: original
author:
- first_name: Barbara Anna
  full_name: Nimeth, Barbara Anna
  last_name: Nimeth
- first_name: Stefan
  full_name: Riegler, Stefan
  id: FF6018E0-D806-11E9-8E43-0B14E6697425
  last_name: Riegler
  orcid: 0000-0003-3413-1343
- first_name: Maria
  full_name: Kalyna, Maria
  last_name: Kalyna
citation:
  ama: Nimeth BA, Riegler S, Kalyna M. Alternative splicing and DNA damage response
    in plants. <i>Frontiers in Plant Science</i>. 2020;11. doi:<a href="https://doi.org/10.3389/fpls.2020.00091">10.3389/fpls.2020.00091</a>
  apa: Nimeth, B. A., Riegler, S., &#38; Kalyna, M. (2020). Alternative splicing and
    DNA damage response in plants. <i>Frontiers in Plant Science</i>. Frontiers. <a
    href="https://doi.org/10.3389/fpls.2020.00091">https://doi.org/10.3389/fpls.2020.00091</a>
  chicago: Nimeth, Barbara Anna, Stefan Riegler, and Maria Kalyna. “Alternative Splicing
    and DNA Damage Response in Plants.” <i>Frontiers in Plant Science</i>. Frontiers,
    2020. <a href="https://doi.org/10.3389/fpls.2020.00091">https://doi.org/10.3389/fpls.2020.00091</a>.
  ieee: B. A. Nimeth, S. Riegler, and M. Kalyna, “Alternative splicing and DNA damage
    response in plants,” <i>Frontiers in Plant Science</i>, vol. 11. Frontiers, 2020.
  ista: Nimeth BA, Riegler S, Kalyna M. 2020. Alternative splicing and DNA damage
    response in plants. Frontiers in Plant Science. 11, 91.
  mla: Nimeth, Barbara Anna, et al. “Alternative Splicing and DNA Damage Response
    in Plants.” <i>Frontiers in Plant Science</i>, vol. 11, 91, Frontiers, 2020, doi:<a
    href="https://doi.org/10.3389/fpls.2020.00091">10.3389/fpls.2020.00091</a>.
  short: B.A. Nimeth, S. Riegler, M. Kalyna, Frontiers in Plant Science 11 (2020).
date_created: 2020-03-22T23:00:46Z
date_published: 2020-02-19T00:00:00Z
date_updated: 2023-08-18T07:05:18Z
day: '19'
ddc:
- '580'
department:
- _id: FyKo
doi: 10.3389/fpls.2020.00091
external_id:
  isi:
  - '000518903600001'
file:
- access_level: open_access
  checksum: 57c37209f7b6712ced86c0f11b2be74e
  content_type: application/pdf
  creator: dernst
  date_created: 2020-03-23T09:03:40Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7607'
  file_name: 2020_FrontiersPlants_Nimeth.pdf
  file_size: 507414
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '        11'
isi: 1
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
publication: Frontiers in Plant Science
publication_identifier:
  eissn:
  - 1664462X
publication_status: published
publisher: Frontiers
quality_controlled: '1'
scopus_import: '1'
status: public
title: Alternative splicing and DNA damage response in plants
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 11
year: '2020'
...
---
_id: '7605'
abstract:
- lang: eng
  text: 'Union-Find (or Disjoint-Set Union) is one of the fundamental problems in
    computer science; it has been well-studied from both theoretical and practical
    perspectives in the sequential case. Recently, there has been mounting interest
    in analyzing this problem in the concurrent scenario, and several asymptotically-efficient
    algorithms have been proposed. Yet, to date, there is very little known about
    the practical performance of concurrent Union-Find. This work addresses this gap.
    We evaluate and analyze the performance of several concurrent Union-Find algorithms
    and optimization strategies across a wide range of platforms (Intel, AMD, and
    ARM) and workloads (social, random, and road networks, as well as integrations
    into more complex algorithms). We first observe that, due to the limited computational
    cost, the number of induced cache misses is the critical determining factor for
    the performance of existing algorithms. We introduce new techniques to reduce
    this cost by storing node priorities implicitly and by using plain reads and writes
    in a way that does not affect the correctness of the algorithms. Finally, we show
    that Union-Find implementations are an interesting application for Transactional
    Memory (TM): one of the fastest algorithm variants we discovered is a sequential
    one that uses coarse-grained locking with the lock elision optimization to reduce
    synchronization cost and increase scalability. '
alternative_title:
- LIPIcs
article_processing_charge: No
arxiv: 1
author:
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: Alexander
  full_name: Fedorov, Alexander
  last_name: Fedorov
- first_name: Nikita
  full_name: Koval, Nikita
  id: 2F4DB10C-F248-11E8-B48F-1D18A9856A87
  last_name: Koval
citation:
  ama: 'Alistarh D-A, Fedorov A, Koval N. In search of the fastest concurrent union-find
    algorithm. In: <i>23rd International Conference on Principles of Distributed Systems</i>.
    Vol 153. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2020:15:1-15:16. doi:<a
    href="https://doi.org/10.4230/LIPIcs.OPODIS.2019.15">10.4230/LIPIcs.OPODIS.2019.15</a>'
  apa: 'Alistarh, D.-A., Fedorov, A., &#38; Koval, N. (2020). In search of the fastest
    concurrent union-find algorithm. In <i>23rd International Conference on Principles
    of Distributed Systems</i> (Vol. 153, p. 15:1-15:16). Neuchatal, Switzerland:
    Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.4230/LIPIcs.OPODIS.2019.15">https://doi.org/10.4230/LIPIcs.OPODIS.2019.15</a>'
  chicago: Alistarh, Dan-Adrian, Alexander Fedorov, and Nikita Koval. “In Search of
    the Fastest Concurrent Union-Find Algorithm.” In <i>23rd International Conference
    on Principles of Distributed Systems</i>, 153:15:1-15:16. Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, 2020. <a href="https://doi.org/10.4230/LIPIcs.OPODIS.2019.15">https://doi.org/10.4230/LIPIcs.OPODIS.2019.15</a>.
  ieee: D.-A. Alistarh, A. Fedorov, and N. Koval, “In search of the fastest concurrent
    union-find algorithm,” in <i>23rd International Conference on Principles of Distributed
    Systems</i>, Neuchatal, Switzerland, 2020, vol. 153, p. 15:1-15:16.
  ista: 'Alistarh D-A, Fedorov A, Koval N. 2020. In search of the fastest concurrent
    union-find algorithm. 23rd International Conference on Principles of Distributed
    Systems. OPODIS: International Conference on Principles of Distributed Systems,
    LIPIcs, vol. 153, 15:1-15:16.'
  mla: Alistarh, Dan-Adrian, et al. “In Search of the Fastest Concurrent Union-Find
    Algorithm.” <i>23rd International Conference on Principles of Distributed Systems</i>,
    vol. 153, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2020, p. 15:1-15:16,
    doi:<a href="https://doi.org/10.4230/LIPIcs.OPODIS.2019.15">10.4230/LIPIcs.OPODIS.2019.15</a>.
  short: D.-A. Alistarh, A. Fedorov, N. Koval, in:, 23rd International Conference
    on Principles of Distributed Systems, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
    2020, p. 15:1-15:16.
conference:
  end_date: 2019-12-19
  location: Neuchatal, Switzerland
  name: 'OPODIS: International Conference on Principles of Distributed Systems'
  start_date: 2019-12-17
corr_author: '1'
date_created: 2020-03-22T23:00:46Z
date_published: 2020-02-01T00:00:00Z
date_updated: 2025-07-10T11:54:46Z
day: '01'
ddc:
- '000'
department:
- _id: DaAl
doi: 10.4230/LIPIcs.OPODIS.2019.15
external_id:
  arxiv:
  - '1911.06347'
file:
- access_level: open_access
  checksum: d66f07ecb609d9f02433e39f80a447e9
  content_type: application/pdf
  creator: dernst
  date_created: 2020-03-23T09:22:48Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7609'
  file_name: 2019_LIPIcs_Alistarh.pdf
  file_size: 13074131
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '       153'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/3.0/
month: '02'
oa: 1
oa_version: Published Version
page: 15:1-15:16
publication: 23rd International Conference on Principles of Distributed Systems
publication_identifier:
  isbn:
  - '9783959771337'
  issn:
  - 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
status: public
title: In search of the fastest concurrent union-find algorithm
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/3.0/legalcode
  name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)
  short: CC BY (3.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 153
year: '2020'
...
---
_id: '7611'
abstract:
- lang: eng
  text: We consider a system of N bosons in the limit N→∞, interacting through singular
    potentials. For initial data exhibiting Bose–Einstein condensation, the many-body
    time evolution is well approximated through a quadratic fluctuation dynamics around
    a cubic nonlinear Schrödinger equation of the condensate wave function. We show
    that these fluctuations satisfy a (multi-variate) central limit theorem.
acknowledgement: "Simone Rademacher acknowledges partial support from the NCCR SwissMAP.
  This project has received\r\nfunding from the European Union’s Horizon 2020 research
  and innovation program under the Marie\r\nSkłodowska-Curie Grant Agreement No. 754411.\r\nOpen
  access funding provided by Institute of Science and Technology (IST Austria).\r\nS.R.
  would like to thank Benjamin Schlein for many fruitful discussions."
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Simone Anna Elvira
  full_name: Rademacher, Simone Anna Elvira
  id: 856966FE-A408-11E9-977E-802DE6697425
  last_name: Rademacher
  orcid: 0000-0001-5059-4466
citation:
  ama: Rademacher SAE. Central limit theorem for Bose gases interacting through singular
    potentials. <i>Letters in Mathematical Physics</i>. 2020;110:2143-2174. doi:<a
    href="https://doi.org/10.1007/s11005-020-01286-w">10.1007/s11005-020-01286-w</a>
  apa: Rademacher, S. A. E. (2020). Central limit theorem for Bose gases interacting
    through singular potentials. <i>Letters in Mathematical Physics</i>. Springer
    Nature. <a href="https://doi.org/10.1007/s11005-020-01286-w">https://doi.org/10.1007/s11005-020-01286-w</a>
  chicago: Rademacher, Simone Anna Elvira. “Central Limit Theorem for Bose Gases Interacting
    through Singular Potentials.” <i>Letters in Mathematical Physics</i>. Springer
    Nature, 2020. <a href="https://doi.org/10.1007/s11005-020-01286-w">https://doi.org/10.1007/s11005-020-01286-w</a>.
  ieee: S. A. E. Rademacher, “Central limit theorem for Bose gases interacting through
    singular potentials,” <i>Letters in Mathematical Physics</i>, vol. 110. Springer
    Nature, pp. 2143–2174, 2020.
  ista: Rademacher SAE. 2020. Central limit theorem for Bose gases interacting through
    singular potentials. Letters in Mathematical Physics. 110, 2143–2174.
  mla: Rademacher, Simone Anna Elvira. “Central Limit Theorem for Bose Gases Interacting
    through Singular Potentials.” <i>Letters in Mathematical Physics</i>, vol. 110,
    Springer Nature, 2020, pp. 2143–74, doi:<a href="https://doi.org/10.1007/s11005-020-01286-w">10.1007/s11005-020-01286-w</a>.
  short: S.A.E. Rademacher, Letters in Mathematical Physics 110 (2020) 2143–2174.
corr_author: '1'
date_created: 2020-03-23T11:11:47Z
date_published: 2020-03-12T00:00:00Z
date_updated: 2025-04-14T07:44:03Z
day: '12'
ddc:
- '510'
department:
- _id: RoSe
doi: 10.1007/s11005-020-01286-w
ec_funded: 1
external_id:
  isi:
  - '000551556000006'
file:
- access_level: open_access
  checksum: 3bdd41f10ad947b67a45b98f507a7d4a
  content_type: application/pdf
  creator: dernst
  date_created: 2020-11-20T12:04:26Z
  date_updated: 2020-11-20T12:04:26Z
  file_id: '8784'
  file_name: 2020_LettersMathPhysics_Rademacher.pdf
  file_size: 478683
  relation: main_file
  success: 1
file_date_updated: 2020-11-20T12:04:26Z
has_accepted_license: '1'
intvolume: '       110'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 2143-2174
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: Letters in Mathematical Physics
publication_identifier:
  eissn:
  - 1573-0530
  issn:
  - 0377-9017
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Central limit theorem for Bose gases interacting through singular potentials
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 110
year: '2020'
...
---
_id: '7618'
abstract:
- lang: eng
  text: 'This short note aims to study quantum Hellinger distances investigated recently
    by Bhatia et al. (Lett Math Phys 109:1777–1804, 2019) with a particular emphasis
    on barycenters. We introduce the family of generalized quantum Hellinger divergences
    that are of the form ϕ(A,B)=Tr((1−c)A+cB−AσB), where σ is an arbitrary Kubo–Ando
    mean, and c∈(0,1) is the weight of σ. We note that these divergences belong to
    the family of maximal quantum f-divergences, and hence are jointly convex, and
    satisfy the data processing inequality. We derive a characterization of the barycenter
    of finitely many positive definite operators for these generalized quantum Hellinger
    divergences. We note that the characterization of the barycenter as the weighted
    multivariate 1/2-power mean, that was claimed in Bhatia et al. (2019), is true
    in the case of commuting operators, but it is not correct in the general case. '
acknowledgement: "J. Pitrik was supported by the Hungarian Academy of Sciences Lendület-Momentum
  Grant for Quantum\r\nInformation Theory, No. 96 141, and by the Hungarian National
  Research, Development and Innovation\r\nOffice (NKFIH) via Grants Nos. K119442,
  K124152 and KH129601. D. Virosztek was supported by the\r\nISTFELLOW program of
  the Institute of Science and Technology Austria (Project Code IC1027FELL01),\r\nby
  the European Union’s Horizon 2020 research and innovation program under the Marie\r\nSklodowska-Curie
  Grant Agreement No. 846294, and partially supported by the Hungarian National\r\nResearch,
  Development and Innovation Office (NKFIH) via Grants Nos. K124152 and KH129601.\r\nWe
  are grateful to Milán Mosonyi for drawing our attention to Ref.’s [6,14,15,17,\r\n20,21],
  for comments on earlier versions of this paper, and for several discussions on the
  topic. We are\r\nalso grateful to Miklós Pálfia for several discussions; to László
  Erdös for his essential suggestions on the\r\nstructure and highlights of this paper,
  and for his comments on earlier versions; and to the anonymous\r\nreferee for his/her
  valuable comments and suggestions."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Jozsef
  full_name: Pitrik, Jozsef
  last_name: Pitrik
- first_name: Daniel
  full_name: Virosztek, Daniel
  id: 48DB45DA-F248-11E8-B48F-1D18A9856A87
  last_name: Virosztek
  orcid: 0000-0003-1109-5511
citation:
  ama: Pitrik J, Virosztek D. Quantum Hellinger distances revisited. <i>Letters in
    Mathematical Physics</i>. 2020;110(8):2039-2052. doi:<a href="https://doi.org/10.1007/s11005-020-01282-0">10.1007/s11005-020-01282-0</a>
  apa: Pitrik, J., &#38; Virosztek, D. (2020). Quantum Hellinger distances revisited.
    <i>Letters in Mathematical Physics</i>. Springer Nature. <a href="https://doi.org/10.1007/s11005-020-01282-0">https://doi.org/10.1007/s11005-020-01282-0</a>
  chicago: Pitrik, Jozsef, and Daniel Virosztek. “Quantum Hellinger Distances Revisited.”
    <i>Letters in Mathematical Physics</i>. Springer Nature, 2020. <a href="https://doi.org/10.1007/s11005-020-01282-0">https://doi.org/10.1007/s11005-020-01282-0</a>.
  ieee: J. Pitrik and D. Virosztek, “Quantum Hellinger distances revisited,” <i>Letters
    in Mathematical Physics</i>, vol. 110, no. 8. Springer Nature, pp. 2039–2052,
    2020.
  ista: Pitrik J, Virosztek D. 2020. Quantum Hellinger distances revisited. Letters
    in Mathematical Physics. 110(8), 2039–2052.
  mla: Pitrik, Jozsef, and Daniel Virosztek. “Quantum Hellinger Distances Revisited.”
    <i>Letters in Mathematical Physics</i>, vol. 110, no. 8, Springer Nature, 2020,
    pp. 2039–52, doi:<a href="https://doi.org/10.1007/s11005-020-01282-0">10.1007/s11005-020-01282-0</a>.
  short: J. Pitrik, D. Virosztek, Letters in Mathematical Physics 110 (2020) 2039–2052.
corr_author: '1'
date_created: 2020-03-25T15:57:48Z
date_published: 2020-08-01T00:00:00Z
date_updated: 2025-10-09T08:23:15Z
day: '01'
department:
- _id: LaEr
doi: 10.1007/s11005-020-01282-0
ec_funded: 1
external_id:
  arxiv:
  - '1903.10455'
  isi:
  - '000551556000002'
intvolume: '       110'
isi: 1
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1903.10455
month: '08'
oa: 1
oa_version: Preprint
page: 2039-2052
project:
- _id: 26A455A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '846294'
  name: Geometric study of Wasserstein spaces and free probability
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Letters in Mathematical Physics
publication_identifier:
  eissn:
  - 1573-0530
  issn:
  - 0377-9017
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Quantum Hellinger distances revisited
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 110
year: '2020'
...
---
_id: '7619'
abstract:
- lang: eng
  text: Cell polarity is a fundamental feature of all multicellular organisms. In
    plants, prominent cell polarity markers are PIN auxin transporters crucial for
    plant development. To identify novel components involved in cell polarity establishment
    and maintenance, we carried out a forward genetic screening with PIN2:PIN1-HA;pin2
    Arabidopsis plants, which ectopically express predominantly basally localized
    PIN1 in the root epidermal cells leading to agravitropic root growth. From the
    screen, we identified the regulator of PIN polarity 12 (repp12) mutation, which
    restored gravitropic root growth and caused PIN1-HA polarity switch from basal
    to apical side of root epidermal cells. Complementation experiments established
    the repp12 causative mutation as an amino acid substitution in Aminophospholipid
    ATPase3 (ALA3), a phospholipid flippase with predicted function in vesicle formation.
    ala3 T-DNA mutants show defects in many auxin-regulated processes, in asymmetric
    auxin distribution and in PIN trafficking. Analysis of quintuple and sextuple
    mutants confirmed a crucial role of ALA proteins in regulating plant development
    and in PIN trafficking and polarity. Genetic and physical interaction studies
    revealed that ALA3 functions together with GNOM and BIG3 ARF GEFs. Taken together,
    our results identified ALA3 flippase as an important interactor and regulator
    of ARF GEF functioning in PIN polarity, trafficking and auxin-mediated development.
acknowledged_ssus:
- _id: Bio
article_processing_charge: No
article_type: original
author:
- first_name: Xixi
  full_name: Zhang, Xixi
  id: 61A66458-47E9-11EA-85BA-8AEAAF14E49A
  last_name: Zhang
  orcid: 0000-0001-7048-4627
- first_name: Maciek
  full_name: Adamowski, Maciek
  id: 45F536D2-F248-11E8-B48F-1D18A9856A87
  last_name: Adamowski
  orcid: 0000-0001-6463-5257
- first_name: Petra
  full_name: Marhavá, Petra
  id: 44E59624-F248-11E8-B48F-1D18A9856A87
  last_name: Marhavá
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: Yuzhou
  full_name: Zhang, Yuzhou
  id: 3B6137F2-F248-11E8-B48F-1D18A9856A87
  last_name: Zhang
  orcid: 0000-0003-2627-6956
- first_name: Lesia
  full_name: Rodriguez Solovey, Lesia
  id: 3922B506-F248-11E8-B48F-1D18A9856A87
  last_name: Rodriguez Solovey
  orcid: 0000-0002-7244-7237
- first_name: Marta
  full_name: Zwiewka, Marta
  last_name: Zwiewka
- first_name: Vendula
  full_name: Pukyšová, Vendula
  last_name: Pukyšová
- first_name: Adrià Sans
  full_name: Sánchez, Adrià Sans
  last_name: Sánchez
- first_name: Vivek Kumar
  full_name: Raxwal, Vivek Kumar
  last_name: Raxwal
- first_name: Christian S.
  full_name: Hardtke, Christian S.
  last_name: Hardtke
- first_name: Tomasz
  full_name: Nodzynski, Tomasz
  last_name: Nodzynski
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Zhang X, Adamowski M, Marhavá P, et al. Arabidopsis flippases cooperate with
    ARF GTPase exchange factors to regulate the trafficking and polarity of PIN auxin
    transporters. <i>The Plant Cell</i>. 2020;32(5):1644-1664. doi:<a href="https://doi.org/10.1105/tpc.19.00869">10.1105/tpc.19.00869</a>
  apa: Zhang, X., Adamowski, M., Marhavá, P., Tan, S., Zhang, Y., Rodriguez Solovey,
    L., … Friml, J. (2020). Arabidopsis flippases cooperate with ARF GTPase exchange
    factors to regulate the trafficking and polarity of PIN auxin transporters. <i>The
    Plant Cell</i>. American Society of Plant Biologists. <a href="https://doi.org/10.1105/tpc.19.00869">https://doi.org/10.1105/tpc.19.00869</a>
  chicago: Zhang, Xixi, Maciek Adamowski, Petra Marhavá, Shutang Tan, Yuzhou Zhang,
    Lesia Rodriguez Solovey, Marta Zwiewka, et al. “Arabidopsis Flippases Cooperate
    with ARF GTPase Exchange Factors to Regulate the Trafficking and Polarity of PIN
    Auxin Transporters.” <i>The Plant Cell</i>. American Society of Plant Biologists,
    2020. <a href="https://doi.org/10.1105/tpc.19.00869">https://doi.org/10.1105/tpc.19.00869</a>.
  ieee: X. Zhang <i>et al.</i>, “Arabidopsis flippases cooperate with ARF GTPase exchange
    factors to regulate the trafficking and polarity of PIN auxin transporters,” <i>The
    Plant Cell</i>, vol. 32, no. 5. American Society of Plant Biologists, pp. 1644–1664,
    2020.
  ista: Zhang X, Adamowski M, Marhavá P, Tan S, Zhang Y, Rodriguez Solovey L, Zwiewka
    M, Pukyšová V, Sánchez AS, Raxwal VK, Hardtke CS, Nodzynski T, Friml J. 2020.
    Arabidopsis flippases cooperate with ARF GTPase exchange factors to regulate the
    trafficking and polarity of PIN auxin transporters. The Plant Cell. 32(5), 1644–1664.
  mla: Zhang, Xixi, et al. “Arabidopsis Flippases Cooperate with ARF GTPase Exchange
    Factors to Regulate the Trafficking and Polarity of PIN Auxin Transporters.” <i>The
    Plant Cell</i>, vol. 32, no. 5, American Society of Plant Biologists, 2020, pp.
    1644–64, doi:<a href="https://doi.org/10.1105/tpc.19.00869">10.1105/tpc.19.00869</a>.
  short: X. Zhang, M. Adamowski, P. Marhavá, S. Tan, Y. Zhang, L. Rodriguez Solovey,
    M. Zwiewka, V. Pukyšová, A.S. Sánchez, V.K. Raxwal, C.S. Hardtke, T. Nodzynski,
    J. Friml, The Plant Cell 32 (2020) 1644–1664.
corr_author: '1'
date_created: 2020-03-28T07:39:22Z
date_published: 2020-05-01T00:00:00Z
date_updated: 2025-04-14T07:45:03Z
day: '01'
department:
- _id: JiFr
doi: 10.1105/tpc.19.00869
ec_funded: 1
external_id:
  isi:
  - '000545741500030'
  pmid:
  - '32193204'
intvolume: '        32'
isi: 1
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1105/tpc.19.00869
month: '05'
oa: 1
oa_version: Published Version
page: 1644-1664
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 26538374-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03630
  name: Molecular mechanisms of endocytic cargo recognition in plants
publication: The Plant Cell
publication_identifier:
  eissn:
  - 1532-298X
  issn:
  - 1040-4651
publication_status: published
publisher: American Society of Plant Biologists
quality_controlled: '1'
scopus_import: '1'
status: public
title: Arabidopsis flippases cooperate with ARF GTPase exchange factors to regulate
  the trafficking and polarity of PIN auxin transporters
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 32
year: '2020'
...
---
_id: '7623'
abstract:
- lang: eng
  text: A two-dimensional mathematical model for cells migrating without adhesion
    capabilities is presented and analyzed. Cells are represented by their cortex,
    which is modeled as an elastic curve, subject to an internal pressure force. Net
    polymerization or depolymerization in the cortex is modeled via local addition
    or removal of material, driving a cortical flow. The model takes the form of a
    fully nonlinear degenerate parabolic system. An existence analysis is carried
    out by adapting ideas from the theory of gradient flows. Numerical simulations
    show that these simple rules can account for the behavior observed in experiments,
    suggesting a possible mechanical mechanism for adhesion-independent motility.
acknowledgement: This work has been supported by the Vienna Science and Technology
  Fund, Grant no. LS13-029. G.J. and C.S. also acknowledge support by the Austrian
  Science Fund, Grants no. W1245, F 65, and W1261, as well as by the Fondation Sciences
  Mathématiques de Paris, and by Paris-Sciences-et-Lettres.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Gaspard
  full_name: Jankowiak, Gaspard
  last_name: Jankowiak
- first_name: Diane
  full_name: Peurichard, Diane
  last_name: Peurichard
- first_name: Anne
  full_name: Reversat, Anne
  id: 35B76592-F248-11E8-B48F-1D18A9856A87
  last_name: Reversat
  orcid: 0000-0003-0666-8928
- first_name: Christian
  full_name: Schmeiser, Christian
  last_name: Schmeiser
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
citation:
  ama: Jankowiak G, Peurichard D, Reversat A, Schmeiser C, Sixt MK. Modeling adhesion-independent
    cell migration. <i>Mathematical Models and Methods in Applied Sciences</i>. 2020;30(3):513-537.
    doi:<a href="https://doi.org/10.1142/S021820252050013X">10.1142/S021820252050013X</a>
  apa: Jankowiak, G., Peurichard, D., Reversat, A., Schmeiser, C., &#38; Sixt, M.
    K. (2020). Modeling adhesion-independent cell migration. <i>Mathematical Models
    and Methods in Applied Sciences</i>. World Scientific Publishing. <a href="https://doi.org/10.1142/S021820252050013X">https://doi.org/10.1142/S021820252050013X</a>
  chicago: Jankowiak, Gaspard, Diane Peurichard, Anne Reversat, Christian Schmeiser,
    and Michael K Sixt. “Modeling Adhesion-Independent Cell Migration.” <i>Mathematical
    Models and Methods in Applied Sciences</i>. World Scientific Publishing, 2020.
    <a href="https://doi.org/10.1142/S021820252050013X">https://doi.org/10.1142/S021820252050013X</a>.
  ieee: G. Jankowiak, D. Peurichard, A. Reversat, C. Schmeiser, and M. K. Sixt, “Modeling
    adhesion-independent cell migration,” <i>Mathematical Models and Methods in Applied
    Sciences</i>, vol. 30, no. 3. World Scientific Publishing, pp. 513–537, 2020.
  ista: Jankowiak G, Peurichard D, Reversat A, Schmeiser C, Sixt MK. 2020. Modeling
    adhesion-independent cell migration. Mathematical Models and Methods in Applied
    Sciences. 30(3), 513–537.
  mla: Jankowiak, Gaspard, et al. “Modeling Adhesion-Independent Cell Migration.”
    <i>Mathematical Models and Methods in Applied Sciences</i>, vol. 30, no. 3, World
    Scientific Publishing, 2020, pp. 513–37, doi:<a href="https://doi.org/10.1142/S021820252050013X">10.1142/S021820252050013X</a>.
  short: G. Jankowiak, D. Peurichard, A. Reversat, C. Schmeiser, M.K. Sixt, Mathematical
    Models and Methods in Applied Sciences 30 (2020) 513–537.
date_created: 2020-03-31T11:25:05Z
date_published: 2020-03-18T00:00:00Z
date_updated: 2025-05-14T10:49:35Z
day: '18'
department:
- _id: MiSi
doi: 10.1142/S021820252050013X
external_id:
  arxiv:
  - '1903.09426'
  isi:
  - '000525349900003'
intvolume: '        30'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1903.09426
month: '03'
oa: 1
oa_version: Preprint
page: 513-537
project:
- _id: 25AD6156-B435-11E9-9278-68D0E5697425
  grant_number: LS13-029
  name: Modeling of Polarization and Motility of Leukocytes in Three-Dimensional Environments
publication: Mathematical Models and Methods in Applied Sciences
publication_identifier:
  issn:
  - '02182025'
publication_status: published
publisher: World Scientific Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Modeling adhesion-independent cell migration
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 30
year: '2020'
...
---
_id: '7634'
abstract:
- lang: eng
  text: Assemblies of colloidal semiconductor nanocrystals (NCs) in the form of thin
    solid films leverage the size-dependent quantum confinement properties and the
    wet chemical methods vital for the development of the emerging solution-processable
    electronics, photonics, and optoelectronics technologies. The ability to control
    the charge carrier transport in the colloidal NC assemblies is fundamental for
    altering their electronic and optical properties for the desired applications.
    Here we demonstrate a strategy to render the solids of narrow-bandgap NC assemblies
    exclusively electron-transporting by creating a type-II heterojunction via shelling.
    Electronic transport of molecularly cross-linked PbTe@PbS core@shell NC assemblies
    is measured using both a conventional solid gate transistor and an electric-double-layer
    transistor, as well as compared with those of core-only PbTe NCs. In contrast
    to the ambipolar characteristics demonstrated by many narrow-bandgap NCs, the
    core@shell NCs exhibit exclusive n-type transport, i.e., drastically suppressed
    contribution of holes to the overall transport. The PbS shell that forms a type-II
    heterojunction assists the selective carrier transport by heavy doping of electrons
    into the PbTe-core conduction level and simultaneously strongly localizes the
    holes within the NC core valence level. This strongly enhanced n-type transport
    makes these core@shell NCs suitable for applications where ambipolar characteristics
    should be actively suppressed, in particular, for thermoelectric and electron-transporting
    layers in photovoltaic devices.
acknowledgement: This work is partly supported by Grants-in-Aid for Scientific Research
  by Young Scientist A (KAKENHI Wakate-A) No. JP17H04802, Grants-in-Aid for Scientific
  Research No. JP19H05602 from the Japan Society for the Promotion of Science, and
  RIKEN Incentive Research Grant (Shoreikadai) 2016. M.V.K. and M.I. acknowledge financial
  support from the European Union (EU) via FP7 ERC Starting Grant 2012 (Project NANOSOLID,
  GA No. 306733) and ETH Zurich via ETH career seed grant (SEED-18 16-2). Support
  from Cambridge Display Technology, Ltd., and Sumitomo Chemical Company is also acknowledged.
  We thank Mrs. T. Kikitsu and Dr. D. Hashizume (RIKEN-CEMS) for access to the transmission
  electron microscope facility.
article_processing_charge: No
article_type: original
author:
- first_name: Retno
  full_name: Miranti, Retno
  last_name: Miranti
- first_name: Daiki
  full_name: Shin, Daiki
  last_name: Shin
- first_name: Ricky Dwi
  full_name: Septianto, Ricky Dwi
  last_name: Septianto
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Maksym V.
  full_name: Kovalenko, Maksym V.
  last_name: Kovalenko
- first_name: Nobuhiro
  full_name: Matsushita, Nobuhiro
  last_name: Matsushita
- first_name: Yoshihiro
  full_name: Iwasa, Yoshihiro
  last_name: Iwasa
- first_name: Satria Zulkarnaen
  full_name: Bisri, Satria Zulkarnaen
  last_name: Bisri
citation:
  ama: Miranti R, Shin D, Septianto RD, et al. Exclusive electron transport in Core@Shell
    PbTe@PbS colloidal semiconductor nanocrystal assemblies. <i>ACS Nano</i>. 2020;14(3):3242-3250.
    doi:<a href="https://doi.org/10.1021/acsnano.9b08687">10.1021/acsnano.9b08687</a>
  apa: Miranti, R., Shin, D., Septianto, R. D., Ibáñez, M., Kovalenko, M. V., Matsushita,
    N., … Bisri, S. Z. (2020). Exclusive electron transport in Core@Shell PbTe@PbS
    colloidal semiconductor nanocrystal assemblies. <i>ACS Nano</i>. American Chemical
    Society. <a href="https://doi.org/10.1021/acsnano.9b08687">https://doi.org/10.1021/acsnano.9b08687</a>
  chicago: Miranti, Retno, Daiki Shin, Ricky Dwi Septianto, Maria Ibáñez, Maksym V.
    Kovalenko, Nobuhiro Matsushita, Yoshihiro Iwasa, and Satria Zulkarnaen Bisri.
    “Exclusive Electron Transport in Core@Shell PbTe@PbS Colloidal Semiconductor Nanocrystal
    Assemblies.” <i>ACS Nano</i>. American Chemical Society, 2020. <a href="https://doi.org/10.1021/acsnano.9b08687">https://doi.org/10.1021/acsnano.9b08687</a>.
  ieee: R. Miranti <i>et al.</i>, “Exclusive electron transport in Core@Shell PbTe@PbS
    colloidal semiconductor nanocrystal assemblies,” <i>ACS Nano</i>, vol. 14, no.
    3. American Chemical Society, pp. 3242–3250, 2020.
  ista: Miranti R, Shin D, Septianto RD, Ibáñez M, Kovalenko MV, Matsushita N, Iwasa
    Y, Bisri SZ. 2020. Exclusive electron transport in Core@Shell PbTe@PbS colloidal
    semiconductor nanocrystal assemblies. ACS Nano. 14(3), 3242–3250.
  mla: Miranti, Retno, et al. “Exclusive Electron Transport in Core@Shell PbTe@PbS
    Colloidal Semiconductor Nanocrystal Assemblies.” <i>ACS Nano</i>, vol. 14, no.
    3, American Chemical Society, 2020, pp. 3242–50, doi:<a href="https://doi.org/10.1021/acsnano.9b08687">10.1021/acsnano.9b08687</a>.
  short: R. Miranti, D. Shin, R.D. Septianto, M. Ibáñez, M.V. Kovalenko, N. Matsushita,
    Y. Iwasa, S.Z. Bisri, ACS Nano 14 (2020) 3242–3250.
date_created: 2020-04-05T22:00:48Z
date_published: 2020-03-24T00:00:00Z
date_updated: 2023-08-18T10:25:40Z
day: '24'
department:
- _id: MaIb
doi: 10.1021/acsnano.9b08687
external_id:
  isi:
  - '000526301400057'
  pmid:
  - '32073817'
intvolume: '        14'
isi: 1
issue: '3'
language:
- iso: eng
month: '03'
oa_version: None
page: 3242-3250
pmid: 1
publication: ACS Nano
publication_identifier:
  eissn:
  - 1936-086X
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Exclusive electron transport in Core@Shell PbTe@PbS colloidal semiconductor
  nanocrystal assemblies
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 14
year: '2020'
...
---
OA_place: publisher
OA_type: free access
_id: '7635'
abstract:
- lang: eng
  text: Concurrent programming can be notoriously complex and error-prone. Programming
    bugs can arise from a variety of sources, such as operation re-reordering, or
    incomplete understanding of the memory model. A variety of formal and model checking
    methods have been developed to address this fundamental difficulty. While technically
    interesting, existing academic methods are still hard to apply to the large codebases
    typical of industrial deployments, which limits their practical impact.
article_processing_charge: No
author:
- first_name: Nikita
  full_name: Koval, Nikita
  id: 2F4DB10C-F248-11E8-B48F-1D18A9856A87
  last_name: Koval
- first_name: Mariia
  full_name: Sokolova, Mariia
  id: 26217AE4-77FF-11EA-8101-AD24D49E41F4
  last_name: Sokolova
- first_name: Alexander
  full_name: Fedorov, Alexander
  last_name: Fedorov
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: Dmitry
  full_name: Tsitelov, Dmitry
  last_name: Tsitelov
citation:
  ama: 'Koval N, Sokolova M, Fedorov A, Alistarh D-A, Tsitelov D. Testing concurrency
    on the JVM with Lincheck. In: <i>Proceedings of the ACM SIGPLAN Symposium on Principles
    and Practice of Parallel Programming</i>. Association for Computing Machinery;
    2020:423-424. doi:<a href="https://doi.org/10.1145/3332466.3374503">10.1145/3332466.3374503</a>'
  apa: 'Koval, N., Sokolova, M., Fedorov, A., Alistarh, D.-A., &#38; Tsitelov, D.
    (2020). Testing concurrency on the JVM with Lincheck. In <i>Proceedings of the
    ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming</i> (pp.
    423–424). San Diego, CA, United States: Association for Computing Machinery. <a
    href="https://doi.org/10.1145/3332466.3374503">https://doi.org/10.1145/3332466.3374503</a>'
  chicago: Koval, Nikita, Mariia Sokolova, Alexander Fedorov, Dan-Adrian Alistarh,
    and Dmitry Tsitelov. “Testing Concurrency on the JVM with Lincheck.” In <i>Proceedings
    of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming</i>,
    423–24. Association for Computing Machinery, 2020. <a href="https://doi.org/10.1145/3332466.3374503">https://doi.org/10.1145/3332466.3374503</a>.
  ieee: N. Koval, M. Sokolova, A. Fedorov, D.-A. Alistarh, and D. Tsitelov, “Testing
    concurrency on the JVM with Lincheck,” in <i>Proceedings of the ACM SIGPLAN Symposium
    on Principles and Practice of Parallel Programming</i>, San Diego, CA, United
    States, 2020, pp. 423–424.
  ista: 'Koval N, Sokolova M, Fedorov A, Alistarh D-A, Tsitelov D. 2020. Testing concurrency
    on the JVM with Lincheck. Proceedings of the ACM SIGPLAN Symposium on Principles
    and Practice of Parallel Programming. PPOPP: Principles and Practice of Parallel
    Programming, 423–424.'
  mla: Koval, Nikita, et al. “Testing Concurrency on the JVM with Lincheck.” <i>Proceedings
    of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming</i>,
    Association for Computing Machinery, 2020, pp. 423–24, doi:<a href="https://doi.org/10.1145/3332466.3374503">10.1145/3332466.3374503</a>.
  short: N. Koval, M. Sokolova, A. Fedorov, D.-A. Alistarh, D. Tsitelov, in:, Proceedings
    of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming,
    Association for Computing Machinery, 2020, pp. 423–424.
conference:
  end_date: 2020-02-26
  location: San Diego, CA, United States
  name: 'PPOPP: Principles and Practice of Parallel Programming'
  start_date: 2020-02-22
date_created: 2020-04-05T22:00:48Z
date_published: 2020-02-19T00:00:00Z
date_updated: 2025-06-25T09:05:49Z
day: '19'
department:
- _id: DaAl
doi: 10.1145/3332466.3374503
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1145/3332466.3374503
month: '02'
oa: 1
oa_version: Published Version
page: 423-424
publication: Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of
  Parallel Programming
publication_identifier:
  isbn:
  - '9781450368186'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: Testing concurrency on the JVM with Lincheck
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '7636'
abstract:
- lang: eng
  text: "Balanced search trees typically use key comparisons to guide their operations,
    and achieve logarithmic running time. By relying on numerical properties of the
    keys, interpolation search achieves lower search complexity and better performance.
    Although interpolation-based data structures were investigated in the past, their
    non-blocking concurrent variants have received very little attention so far.\r\nIn
    this paper, we propose the first non-blocking implementation of the classic interpolation
    search tree (IST) data structure. For arbitrary key distributions, the data structure
    ensures worst-case O(log n + p) amortized time for search, insertion and deletion
    traversals. When the input key distributions are smooth, lookups run in expected
    O(log log n + p) time, and insertion and deletion run in expected amortized O(log
    log n + p) time, where p is a bound on the number of threads. To improve the scalability
    of concurrent insertion and deletion, we propose a novel parallel rebuilding technique,
    which should be of independent interest.\r\nWe evaluate whether the theoretical
    improvements translate to practice by implementing the concurrent interpolation
    search tree, and benchmarking it on uniform and nonuniform key distributions,
    for dataset sizes in the millions to billions of keys. Relative to the state-of-the-art
    concurrent data structures, the concurrent interpolation search tree achieves
    performance improvements of up to 15% under high update rates, and of up to 50%
    under moderate update rates. Further, ISTs exhibit up to 2X less cache-misses,
    and consume 1.2 -- 2.6X less memory compared to the next best alternative on typical
    dataset sizes. We find that the results are surprisingly robust to distributional
    skew, which suggests that our data structure can be a promising alternative to
    classic concurrent search structures."
acknowledgement: "This project has received funding from the European Research Council
  (ERC) under the European Union Horizon 2020 research and innovation program, grant
  agreement No 805223, ERC Starting Grant ScaleML. We acknowledge the support of the
  Natural Sciences and\r\nEngineering Research Council of Canada (NSERC). "
article_processing_charge: No
author:
- first_name: Trevor A
  full_name: Brown, Trevor A
  id: 3569F0A0-F248-11E8-B48F-1D18A9856A87
  last_name: Brown
- first_name: Aleksandar
  full_name: Prokopec, Aleksandar
  last_name: Prokopec
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
citation:
  ama: 'Brown TA, Prokopec A, Alistarh D-A. Non-blocking interpolation search trees
    with doubly-logarithmic running time. In: <i>Proceedings of the ACM SIGPLAN Symposium
    on Principles and Practice of Parallel Programming</i>. Association for Computing
    Machinery; 2020:276-291. doi:<a href="https://doi.org/10.1145/3332466.3374542">10.1145/3332466.3374542</a>'
  apa: 'Brown, T. A., Prokopec, A., &#38; Alistarh, D.-A. (2020). Non-blocking interpolation
    search trees with doubly-logarithmic running time. In <i>Proceedings of the ACM
    SIGPLAN Symposium on Principles and Practice of Parallel Programming</i> (pp.
    276–291). San Diego, CA, United States: Association for Computing Machinery. <a
    href="https://doi.org/10.1145/3332466.3374542">https://doi.org/10.1145/3332466.3374542</a>'
  chicago: Brown, Trevor A, Aleksandar Prokopec, and Dan-Adrian Alistarh. “Non-Blocking
    Interpolation Search Trees with Doubly-Logarithmic Running Time.” In <i>Proceedings
    of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming</i>,
    276–91. Association for Computing Machinery, 2020. <a href="https://doi.org/10.1145/3332466.3374542">https://doi.org/10.1145/3332466.3374542</a>.
  ieee: T. A. Brown, A. Prokopec, and D.-A. Alistarh, “Non-blocking interpolation
    search trees with doubly-logarithmic running time,” in <i>Proceedings of the ACM
    SIGPLAN Symposium on Principles and Practice of Parallel Programming</i>, San
    Diego, CA, United States, 2020, pp. 276–291.
  ista: 'Brown TA, Prokopec A, Alistarh D-A. 2020. Non-blocking interpolation search
    trees with doubly-logarithmic running time. Proceedings of the ACM SIGPLAN Symposium
    on Principles and Practice of Parallel Programming. PPOPP: Principles and Practice
    of Parallel Programming, 276–291.'
  mla: Brown, Trevor A., et al. “Non-Blocking Interpolation Search Trees with Doubly-Logarithmic
    Running Time.” <i>Proceedings of the ACM SIGPLAN Symposium on Principles and Practice
    of Parallel Programming</i>, Association for Computing Machinery, 2020, pp. 276–91,
    doi:<a href="https://doi.org/10.1145/3332466.3374542">10.1145/3332466.3374542</a>.
  short: T.A. Brown, A. Prokopec, D.-A. Alistarh, in:, Proceedings of the ACM SIGPLAN
    Symposium on Principles and Practice of Parallel Programming, Association for
    Computing Machinery, 2020, pp. 276–291.
conference:
  end_date: 2020-02-26
  location: San Diego, CA, United States
  name: 'PPOPP: Principles and Practice of Parallel Programming'
  start_date: 2020-02-22
date_created: 2020-04-05T22:00:49Z
date_published: 2020-02-19T00:00:00Z
date_updated: 2025-04-14T07:49:16Z
day: '19'
department:
- _id: DaAl
doi: 10.1145/3332466.3374542
ec_funded: 1
external_id:
  isi:
  - '000564476500020'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1145/3332466.3374542
month: '02'
oa: 1
oa_version: Published Version
page: 276-291
project:
- _id: 268A44D6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '805223'
  name: Elastic Coordination for Scalable Machine Learning
publication: Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of
  Parallel Programming
publication_identifier:
  isbn:
  - '9781450368186'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: Non-blocking interpolation search trees with doubly-logarithmic running time
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '7646'
abstract:
- lang: eng
  text: In plant cells, environmental stressors promote changes in connectivity between
    the cortical ER and the PM. Although this process is tightly regulated in space
    and time, the molecular signals and structural components mediating these changes
    in inter-organelle communication are only starting to be characterized. In this
    report, we confirm the presence of a putative tethering complex containing the
    synaptotagmins 1 and 5 (SYT1 and SYT5) and the Ca2+ and lipid binding protein
    1 (CLB1/SYT7). This complex is enriched at ER-PM contact sites (EPCS), have slow
    responses to changes in extracellular Ca2+, and display severe cytoskeleton-dependent
    rearrangements in response to the trivalent lanthanum (La3+) and gadolinium (Gd3+)
    rare earth elements (REEs). Although REEs are generally used as non-selective
    cation channel blockers at the PM, here we show that the slow internalization
    of REEs into the cytosol underlies the activation of the Ca2+/Calmodulin intracellular
    signaling, the accumulation of phosphatidylinositol-4-phosphate (PI4P) at the
    PM, and the cytoskeleton-dependent rearrangement of the SYT1/SYT5 EPCS complexes.
    We propose that the observed EPCS rearrangements act as a slow adaptive response
    to sustained stress conditions, and that this process involves the accumulation
    of stress-specific phosphoinositides species at the PM.
article_processing_charge: No
article_type: original
author:
- first_name: E
  full_name: Lee, E
  last_name: Lee
- first_name: B
  full_name: Vila Nova Santana, B
  last_name: Vila Nova Santana
- first_name: E
  full_name: Samuels, E
  last_name: Samuels
- first_name: F
  full_name: Benitez-Fuente, F
  last_name: Benitez-Fuente
- first_name: E
  full_name: Corsi, E
  last_name: Corsi
- first_name: MA
  full_name: Botella, MA
  last_name: Botella
- first_name: J
  full_name: Perez-Sancho, J
  last_name: Perez-Sancho
- first_name: S
  full_name: Vanneste, S
  last_name: Vanneste
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: A
  full_name: Macho, A
  last_name: Macho
- first_name: A
  full_name: Alves Azevedo, A
  last_name: Alves Azevedo
- first_name: A
  full_name: Rosado, A
  last_name: Rosado
citation:
  ama: Lee E, Vila Nova Santana B, Samuels E, et al. Rare earth elements induce cytoskeleton-dependent
    and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in
    Arabidopsis. <i>Journal of Experimental Botany</i>. 2020;71(14):3986–3998. doi:<a
    href="https://doi.org/10.1093/jxb/eraa138">10.1093/jxb/eraa138</a>
  apa: Lee, E., Vila Nova Santana, B., Samuels, E., Benitez-Fuente, F., Corsi, E.,
    Botella, M., … Rosado, A. (2020). Rare earth elements induce cytoskeleton-dependent
    and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in
    Arabidopsis. <i>Journal of Experimental Botany</i>. Oxford University Press. <a
    href="https://doi.org/10.1093/jxb/eraa138">https://doi.org/10.1093/jxb/eraa138</a>
  chicago: Lee, E, B Vila Nova Santana, E Samuels, F Benitez-Fuente, E Corsi, MA Botella,
    J Perez-Sancho, et al. “Rare Earth Elements Induce Cytoskeleton-Dependent and
    PI4P-Associated Rearrangement of SYT1/SYT5 ER-PM Contact Site Complexes in Arabidopsis.”
    <i>Journal of Experimental Botany</i>. Oxford University Press, 2020. <a href="https://doi.org/10.1093/jxb/eraa138">https://doi.org/10.1093/jxb/eraa138</a>.
  ieee: E. Lee <i>et al.</i>, “Rare earth elements induce cytoskeleton-dependent and
    PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis,”
    <i>Journal of Experimental Botany</i>, vol. 71, no. 14. Oxford University Press,
    pp. 3986–3998, 2020.
  ista: Lee E, Vila Nova Santana B, Samuels E, Benitez-Fuente F, Corsi E, Botella
    M, Perez-Sancho J, Vanneste S, Friml J, Macho A, Alves Azevedo A, Rosado A. 2020.
    Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement
    of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis. Journal of Experimental
    Botany. 71(14), 3986–3998.
  mla: Lee, E., et al. “Rare Earth Elements Induce Cytoskeleton-Dependent and PI4P-Associated
    Rearrangement of SYT1/SYT5 ER-PM Contact Site Complexes in Arabidopsis.” <i>Journal
    of Experimental Botany</i>, vol. 71, no. 14, Oxford University Press, 2020, pp.
    3986–3998, doi:<a href="https://doi.org/10.1093/jxb/eraa138">10.1093/jxb/eraa138</a>.
  short: E. Lee, B. Vila Nova Santana, E. Samuels, F. Benitez-Fuente, E. Corsi, M.
    Botella, J. Perez-Sancho, S. Vanneste, J. Friml, A. Macho, A. Alves Azevedo, A.
    Rosado, Journal of Experimental Botany 71 (2020) 3986–3998.
date_created: 2020-04-06T10:57:08Z
date_published: 2020-07-06T00:00:00Z
date_updated: 2024-10-21T06:02:26Z
day: '06'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1093/jxb/eraa138
external_id:
  isi:
  - '000553125400007'
  pmid:
  - '32179893'
file:
- access_level: open_access
  checksum: b06aaaa93dc41896da805fe4b75cf3a1
  content_type: application/pdf
  creator: dernst
  date_created: 2020-10-06T07:41:35Z
  date_updated: 2020-10-06T07:41:35Z
  file_id: '8613'
  file_name: 2020_JourExperimBotany_Lee.pdf
  file_size: 1916031
  relation: main_file
  success: 1
file_date_updated: 2020-10-06T07:41:35Z
has_accepted_license: '1'
intvolume: '        71'
isi: 1
issue: '14'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 3986–3998
pmid: 1
publication: Journal of Experimental Botany
publication_identifier:
  eissn:
  - 1460-2431
  issn:
  - 0022-0957
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement
  of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 71
year: '2020'
...
