---
OA_place: repository
_id: '21960'
abstract:
- lang: eng
  text: "Solitons - localized wave packets that travel without spreading - play a
    central role in understanding transport and properties of nonlinear systems. In
    quantum many-body systems, however, such robust excitations are typically destroyed
    by thermalization. Here, we theoretically demonstrate the existence of solitonic
    excitations in high-energy states of Rydberg atom chains in the regime of strong
    nearest-neighbor Rydberg blockade. \r\nThese localized wave packets propagate
    directionally atop a special class of reviving initial states related to quantum
    many-body scars and are capable of carrying energy. Exhibiting long coherence
    times, these states constitute a form of non-ergodic quantum dynamics and can
    be efficiently implemented on Rydberg atom simulators. In this work, in addition
    to a phenomenological description of solitons, we identify their counterpart in
    a classical nonlinear dynamical system, demonstrate their potential use in quantum
    information transfer, and conjecture their relevance for anomalous energy transport
    reported in numerical studies of Rydberg atom arrays."
article_processing_charge: No
author:
- first_name: Aron
  full_name: Kerschbaumer, Aron
  id: ade85a9c-3200-11ee-973b-91c1eb240410
  last_name: Kerschbaumer
  orcid: 0009-0002-2370-8661
citation:
  ama: 'Kerschbaumer A. Research Data: “Quasi-solitons in Rydberg atom chains.” 2026.
    doi:<a href="https://doi.org/10.15479/AT-ISTA-21960">10.15479/AT-ISTA-21960</a>'
  apa: 'Kerschbaumer, A. (2026). Research Data: “Quasi-solitons in Rydberg atom chains.”
    Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT-ISTA-21960">https://doi.org/10.15479/AT-ISTA-21960</a>'
  chicago: 'Kerschbaumer, Aron. “Research Data: ‘Quasi-Solitons in Rydberg Atom Chains.’”
    Institute of Science and Technology Austria, 2026. <a href="https://doi.org/10.15479/AT-ISTA-21960">https://doi.org/10.15479/AT-ISTA-21960</a>.'
  ieee: 'A. Kerschbaumer, “Research Data: ‘Quasi-solitons in Rydberg atom chains.’”
    Institute of Science and Technology Austria, 2026.'
  ista: 'Kerschbaumer A. 2026. Research Data: ‘Quasi-solitons in Rydberg atom chains’,
    Institute of Science and Technology Austria, <a href="https://doi.org/10.15479/AT-ISTA-21960">10.15479/AT-ISTA-21960</a>.'
  mla: 'Kerschbaumer, Aron. <i>Research Data: “Quasi-Solitons in Rydberg Atom Chains.”</i>
    Institute of Science and Technology Austria, 2026, doi:<a href="https://doi.org/10.15479/AT-ISTA-21960">10.15479/AT-ISTA-21960</a>.'
  short: A. Kerschbaumer, (2026).
contributor:
- contributor_type: contact_person
  first_name: Aron
  id: ade85a9c-3200-11ee-973b-91c1eb240410
  last_name: Kerschbaumer
  orcid: 0009-0002-2370-8661
- contributor_type: supervisor
  first_name: Maksym
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
- contributor_type: researcher
  first_name: Jean-Yves Marc
  id: 6c292945-a610-11ed-9eec-c3be1ad62a80
  last_name: Desaules
  orcid: 0000-0002-3749-6375
- contributor_type: researcher
  first_name: Marko
  last_name: Ljubotina
corr_author: '1'
date_created: 2026-06-09T07:17:50Z
date_published: 2026-06-16T00:00:00Z
date_updated: 2026-09-17T10:54:08Z
day: '16'
department:
- _id: GradSch
- _id: MaSe
doi: 10.15479/AT-ISTA-21960
ec_funded: 1
file:
- access_level: open_access
  checksum: 133269a105e996c6c44fdd56128259c7
  content_type: text/plain
  creator: akerschb
  date_created: 2026-06-15T22:01:57Z
  date_updated: 2026-06-15T22:01:57Z
  file_id: '22010'
  file_name: README.txt
  file_size: 1940
  relation: main_file
  success: 1
- access_level: open_access
  checksum: 759f9649c3919f4c4ad37a1d104ea32a
  content_type: application/zip
  creator: akerschb
  date_created: 2026-06-15T22:02:07Z
  date_updated: 2026-06-15T22:02:07Z
  file_id: '22011'
  file_name: Soliton_Data.zip
  file_size: 13259747
  relation: main_file
  success: 1
file_date_updated: 2026-06-15T22:02:07Z
fulldoi: https://doi.org/10.15479/AT-ISTA-21960
has_accepted_license: '1'
license: https://creativecommons.org/licenses/by-nc/4.0/
month: '06'
oa: 1
oa_version: Published Version
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '22408'
    relation: used_in_publication
    status: public
status: public
title: 'Research Data: "Quasi-solitons in Rydberg atom chains"'
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: research_data
user_id: 68b8ca59-c5b3-11ee-8790-cd641c68093d
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '22941'
abstract:
- lang: eng
  text: Argonaute proteins mediate RNA interference in eukaryotes and nucleic‐acid
    defence in prokaryotes. Although these systems operate in distinct biological
    contexts and produce diverse downstream outcomes, they share a conserved structural
    architecture and mechanism of guide‐dependent target recognition. Here, we argue
    that Argonautes function as programmable surveillance platforms that kinetically
    sample nucleic acids, engage targets through sequential pairing and conformational
    checkpoints, and couple recognition to functional outputs through regulated structural
    transitions. Rather than representing distinct recognition mechanisms, the diverse
    targeting behaviours observed across Argonaute families reflect different implementations
    of this shared framework, in which guide biogenesis, target accessibility, pairing
    requirements and effector coupling are weighted differently according to biological
    context. Viewing Argonautes through this common operational logic reconciles apparent
    differences in specificity, mismatch tolerance and target selection across systems,
    while providing a unified conceptual framework for understanding their evolution
    and guiding the engineering of programmable nucleic‐acid recognition technologies.
acknowledgement: I would like to thank K. Kiernan and F. Alcon for insightful comments
  and feedback. We acknowledge support from ISTA and from the Austrian Science Fund
  (FWF) (10.55776/PAT1617625). The author used Claude (Anthropic) to assist with improving
  the clarity and readability of portions of the manuscript. All scientific content,
  interpretation and conclusions were conceived, verified and approved by the author,
  who takes full responsibility for the final manuscript. Open Access funding provided
  by Institute of Science and Technology Austria.
article_number: 1873-3468.70450
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Jack Peter Kelly
  full_name: Bravo, Jack Peter Kelly
  id: 96aecfa5-8931-11ee-af30-aa6a5d6eee0e
  last_name: Bravo
  orcid: 0000-0003-0456-0753
citation:
  ama: Bravo JPK. ‘Guide and Prejudice’ -  How Argonautes recognize targets across
    domains of life. <i>FEBS Letters</i>. 2026. doi:<a href="https://doi.org/10.1002/1873-3468.70450">10.1002/1873-3468.70450</a>
  apa: Bravo, J. P. K. (2026). ‘Guide and Prejudice’ -  How Argonautes recognize targets
    across domains of life. <i>FEBS Letters</i>. Wiley. <a href="https://doi.org/10.1002/1873-3468.70450">https://doi.org/10.1002/1873-3468.70450</a>
  chicago: Bravo, Jack Peter Kelly. “‘Guide and Prejudice’ -  How Argonautes Recognize
    Targets across Domains of Life.” <i>FEBS Letters</i>. Wiley, 2026. <a href="https://doi.org/10.1002/1873-3468.70450">https://doi.org/10.1002/1873-3468.70450</a>.
  ieee: J. P. K. Bravo, “‘Guide and Prejudice’ -  How Argonautes recognize targets
    across domains of life,” <i>FEBS Letters</i>. Wiley, 2026.
  ista: Bravo JPK. 2026. ‘Guide and Prejudice’ -  How Argonautes recognize targets
    across domains of life. FEBS Letters., 1873–3468.70450.
  mla: Bravo, Jack Peter Kelly. “‘Guide and Prejudice’ -  How Argonautes Recognize
    Targets across Domains of Life.” <i>FEBS Letters</i>, 1873–3468.70450, Wiley,
    2026, doi:<a href="https://doi.org/10.1002/1873-3468.70450">10.1002/1873-3468.70450</a>.
  short: J.P.K. Bravo, FEBS Letters (2026).
corr_author: '1'
das_tickbox: '0'
date_created: 2026-09-17T09:31:02Z
date_published: 2026-09-08T00:00:00Z
date_updated: 2026-09-17T11:48:51Z
day: '08'
ddc:
- '570'
department:
- _id: JaBr
doi: 10.1002/1873-3468.70450
external_id:
  pmid:
  - '42711859'
fulldoi: https://doi.org/10.1002/1873-3468.70450
has_accepted_license: '1'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1002/1873-3468.70450
month: '09'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 9f295cab-ad08-11f1-bc83-9e197d0f6d50
  grant_number: PAT1617625
  name: 'Search & Destroy: Mechanisms of anti-plasmid immunity'
publication: FEBS Letters
publication_identifier:
  eissn:
  - 1873-3468
  issn:
  - 0014-5793
publication_status: epub_ahead
publisher: Wiley
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: no
title: ‘Guide and Prejudice’ -  How Argonautes recognize targets across domains of
  life
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21501'
abstract:
- lang: eng
  text: "Kinetically constrained models were originally introduced to capture slow
    relaxation in glassy systems, where dynamics are hindered by local constraints
    instead of energy barriers. Their quantum counterparts have recently drawn attention
    for exhibiting highly degenerate eigenstates at zero energy—known as zero modes—stemming
    from chiral symmetry. Yet, the structure and implications of these zero modes
    remain poorly understood. In this work, we focus on the properties of the zero
    mode subspace in quantum kinetically constrained models with a U(1) particle-conservation
    symmetry. We use the U(1) East, which lacks inversion symmetry, and the inversion-symmetric
    U(1) East-West models to illustrate our two main results. First, we observe that
    the simultaneous presence of constraints and chiral symmetry generally leads to
    a parametric increase in the number of zero modes due to the fragmentation of
    the many-body\r\nHilbert space into disconnected sectors. Second, we generalize
    the concept of compact localized states from single-particle physics and introduce
    the notion of collective bound states, a special kind of nonergodic eigenstates
    that are robust to enlarging the system size. We formulate sufficient criteria
    for their existence, arguing that the degenerate zero mode subspace plays a central
    role, and demonstrate bound states in both example models and in a two-dimensional
    model, the U(1) North-East, and in the pairflip model, a system without particle
    conservation. Our results motivate a systematic study of bound states and their
    relation to ergodicity breaking, transport, and other properties of quantum kinetically
    constrained\r\nmodels. "
acknowledgement: The authors acknowledge useful discussions with Berislav Buca. This
  work was supported by the European Research Council (ERC) under the European Union’s
  Horizon 2020 research and innovation program (Grant Agreement No. 850899). M.L.
  acknowledges support by the Deutsche Forschungsgemeinschaft (DFG, German Research
  Foundation) under Germany’s Excellence Strategy—EXC-2111—390814868. This research
  was supported in part by grant NSF PHY-2309135 to the Kavli Institute for Theoretical
  Physics (KITP).
article_number: '010352'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Eulalia
  full_name: Nicolau Jimenez, Eulalia
  id: 04b4791c-8fd7-11ee-a7df-be2fdc569c48
  last_name: Nicolau Jimenez
- first_name: Marko
  full_name: Ljubotina, Marko
  id: F75EE9BE-5C90-11EA-905D-16643DDC885E
  last_name: Ljubotina
  orcid: 0000-0003-0038-7068
- first_name: Maksym
  full_name: Serbyn, Maksym
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
citation:
  ama: Nicolau Jimenez E, Ljubotina M, Serbyn M. Fragmentation, zero modes, and collective
    bound states in constrained models. <i>PRX Quantum</i>. 2026;7. doi:<a href="https://doi.org/10.1103/sl79-1xgb">10.1103/sl79-1xgb</a>
  apa: Nicolau Jimenez, E., Ljubotina, M., &#38; Serbyn, M. (2026). Fragmentation,
    zero modes, and collective bound states in constrained models. <i>PRX Quantum</i>.
    American Physical Society. <a href="https://doi.org/10.1103/sl79-1xgb">https://doi.org/10.1103/sl79-1xgb</a>
  chicago: Nicolau Jimenez, Eloi, Marko Ljubotina, and Maksym Serbyn. “Fragmentation,
    Zero Modes, and Collective Bound States in Constrained Models.” <i>PRX Quantum</i>.
    American Physical Society, 2026. <a href="https://doi.org/10.1103/sl79-1xgb">https://doi.org/10.1103/sl79-1xgb</a>.
  ieee: E. Nicolau Jimenez, M. Ljubotina, and M. Serbyn, “Fragmentation, zero modes,
    and collective bound states in constrained models,” <i>PRX Quantum</i>, vol. 7.
    American Physical Society, 2026.
  ista: Nicolau Jimenez E, Ljubotina M, Serbyn M. 2026. Fragmentation, zero modes,
    and collective bound states in constrained models. PRX Quantum. 7, 010352.
  mla: Nicolau Jimenez, Eloi, et al. “Fragmentation, Zero Modes, and Collective Bound
    States in Constrained Models.” <i>PRX Quantum</i>, vol. 7, 010352, American Physical
    Society, 2026, doi:<a href="https://doi.org/10.1103/sl79-1xgb">10.1103/sl79-1xgb</a>.
  short: E. Nicolau Jimenez, M. Ljubotina, M. Serbyn, PRX Quantum 7 (2026).
corr_author: '1'
date_created: 2026-03-28T14:57:56Z
date_published: 2026-03-13T00:00:00Z
date_updated: 2026-09-17T11:50:06Z
day: '13'
ddc:
- '530'
department:
- _id: MaSe
doi: 10.1103/sl79-1xgb
ec_funded: 1
external_id:
  arxiv:
  - '2504.17627'
file:
- access_level: open_access
  checksum: d155ffa9e1a8275702149165f4bf963c
  content_type: application/pdf
  creator: dernst
  date_created: 2026-03-30T06:08:07Z
  date_updated: 2026-03-30T06:08:07Z
  file_id: '21505'
  file_name: 2026_PRXQuantum_Nicolau.pdf
  file_size: 1848724
  relation: main_file
  success: 1
file_date_updated: 2026-03-30T06:08:07Z
fulldoi: https://doi.org/10.1103/sl79-1xgb
has_accepted_license: '1'
intvolume: '         7'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: 23841C26-32DE-11EA-91FC-C7463DDC885E
  call_identifier: H2020
  grant_number: '850899'
  name: 'Non-Ergodic Quantum Matter: Universality, Dynamics and Control'
publication: PRX Quantum
publication_identifier:
  eissn:
  - 2691-3399
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Fragmentation, zero modes, and collective bound states in constrained models
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2026'
...
---
OA_place: publisher
OA_type: gold
_id: '22245'
abstract:
- lang: eng
  text: "A single-commodity congestion approximator for a graph is a compact data
    structure that approximately predicts the edge congestion required to route any
    set of single-commodity flow demands in a network. A hierarchical congestion approximator
    (HCA) consists of a laminar family of cuts in the graph and has numerous applications
    in approximating cut and flow problems in graphs, designing efficient routing
    schemes, and managing distributed networks.\r\nThere is a tradeoff between the
    running time for computing an HCA and its approximation quality. The best polynomial-time
    construction in an n-node graph gives an HCA with approximation quality O(log1.5n
    loglogn). Among near-linear time algorithms, the best previous result achieves
    approximation quality O(log4 n). We improve upon the latter result by giving the
    first near-linear time algorithm for computing an HCA with approximation quality
    O(log2 n loglogn). Additionally, our algorithm can be implemented in the parallel
    setting with polylogarithmic span and near-linear work, achieving the same approximation
    quality. This improves upon the best previous such algorithm, which has an O(log9n)
    approximation quality. We also present a lower bound of Ω(logn) for the approximation
    guarantee of hierarchical congestion approximators.\r\nCrucial for achieving a
    near-linear running time is a new partitioning routine that, unlike previous such
    routines, manages to avoid recursing on large subgraphs. To achieve the improved
    approximation quality, we introduce the new concept of border routability of a
    cut and provide an improved sparsest cut oracle for general vertex weights."
acknowledgement: "We thank Evangelos Kosinas for helpful discussions on this topic.\r\nFunded
  by the European Union. Views and opinions expressed\r\nare however those of the
  author(s) only and do not necessarily\r\nreflect those of the European Union or
  the European Research\r\nCouncil Executive Agency. Neither the European Union nor
  the\r\ngranting authority can be held responsible for them.\r\nThis project has
  received funding from the European Research\r\nCouncil (ERC) under the European
  Union’s Horizon 2020 research\r\nand innovation programme (MoDynStruct, No. 101019564)\r\nand
  the Austrian Science Fund (FWF) grant DOI 10.55776/I5982. For\r\nopen access purposes,
  the author has applied a CC BY public copyright license to any author-accepted manuscript
  version arising\r\nfrom this submission.\r\nThis project has received funding from
  the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) – 498605858."
article_processing_charge: Yes
arxiv: 1
author:
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
- first_name: Robin
  full_name: Münk, Robin
  last_name: Münk
- first_name: Harald
  full_name: Räcke, Harald
  last_name: Räcke
citation:
  ama: 'Henzinger M, Münk R, Räcke H. An improved quality hierarchical congestion
    approximator in near-linear time. In: <i>58th Annual ACM Symposium on Theory of
    Computing</i>. ACM; 2026:1417-1428. doi:<a href="https://doi.org/10.1145/3798129.3800851">10.1145/3798129.3800851</a>'
  apa: 'Henzinger, M., Münk, R., &#38; Räcke, H. (2026). An improved quality hierarchical
    congestion approximator in near-linear time. In <i>58th Annual ACM Symposium on
    Theory of Computing</i> (pp. 1417–1428). Salt Lake City, UT, United States: ACM.
    <a href="https://doi.org/10.1145/3798129.3800851">https://doi.org/10.1145/3798129.3800851</a>'
  chicago: Henzinger, Monika, Robin Münk, and Harald Räcke. “An Improved Quality Hierarchical
    Congestion Approximator in Near-Linear Time.” In <i>58th Annual ACM Symposium
    on Theory of Computing</i>, 1417–28. ACM, 2026. <a href="https://doi.org/10.1145/3798129.3800851">https://doi.org/10.1145/3798129.3800851</a>.
  ieee: M. Henzinger, R. Münk, and H. Räcke, “An improved quality hierarchical congestion
    approximator in near-linear time,” in <i>58th Annual ACM Symposium on Theory of
    Computing</i>, Salt Lake City, UT, United States, 2026, pp. 1417–1428.
  ista: 'Henzinger M, Münk R, Räcke H. 2026. An improved quality hierarchical congestion
    approximator in near-linear time. 58th Annual ACM Symposium on Theory of Computing.
    STOC: Symposium on the Theory of Computing, 1417–1428.'
  mla: Henzinger, Monika, et al. “An Improved Quality Hierarchical Congestion Approximator
    in Near-Linear Time.” <i>58th Annual ACM Symposium on Theory of Computing</i>,
    ACM, 2026, pp. 1417–28, doi:<a href="https://doi.org/10.1145/3798129.3800851">10.1145/3798129.3800851</a>.
  short: M. Henzinger, R. Münk, H. Räcke, in:, 58th Annual ACM Symposium on Theory
    of Computing, ACM, 2026, pp. 1417–1428.
conference:
  end_date: 2026-06-26
  location: Salt Lake City, UT, United States
  name: 'STOC: Symposium on the Theory of Computing'
  start_date: 2026-06-22
corr_author: '1'
das_tickbox: '0'
date_created: 2026-07-05T22:01:36Z
date_published: 2026-06-09T00:00:00Z
date_updated: 2026-09-17T12:39:36Z
day: '09'
ddc:
- '000'
department:
- _id: MoHe
doi: 10.1145/3798129.3800851
ec_funded: 1
external_id:
  arxiv:
  - '2511.03716'
file:
- access_level: open_access
  checksum: 2bef46be8da6d19a641697bb0d8ade65
  content_type: application/pdf
  creator: dernst
  date_created: 2026-07-06T06:57:16Z
  date_updated: 2026-07-06T06:57:16Z
  file_id: '22250'
  file_name: 2026_STOC_HenzingerMo.pdf
  file_size: 919005
  relation: main_file
  success: 1
file_date_updated: 2026-07-06T06:57:16Z
fulldoi: https://doi.org/10.1145/3798129.3800851
has_accepted_license: '1'
keyword:
- Congestion Approximators
- Hierarchical Graph Decompositions
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 1417-1428
project:
- _id: bd9ca328-d553-11ed-ba76-dc4f890cfe62
  call_identifier: H2020
  grant_number: '101019564'
  name: The design and evaluation of modern fully dynamic data structures
- _id: bda196b2-d553-11ed-ba76-8e8ee6c21103
  grant_number: I05982
  name: Static and Dynamic Hierarchical Graph Decompositions
publication: 58th Annual ACM Symposium on Theory of Computing
publication_identifier:
  isbn:
  - '9798400725364'
  issn:
  - 0737-8017
publication_status: published
publisher: ACM
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: no
title: An improved quality hierarchical congestion approximator in near-linear time
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2026'
...
---
OA_place: publisher
OA_type: gold
_id: '21921'
abstract:
- lang: eng
  text: "A variety of problems in geometry processing boil down to finding the most\r\nparallel
    field relative to a connection. Instances of this prototypical problem\r\nshow
    up in computing direction fields and stripe patterns, quadrilateral\r\nmeshing,
    and visualization of fluid flows. When the class of allowed fields\r\nincludes
    those with topological defects, a relaxation is required to make\r\nthe problem
    well-posed. We observe that these problems can be viewed\r\nas synchronization
    problems, which admit a natural semidefinite relaxation.\r\nWe propose a unified
    method of solving all these problems via the efficient\r\nBurer-Monteiro factorization
    method. Geometrically, this amounts to lifting the field values to a higher-dimensional
    manifold, naturally resolving\r\nthe singular nature of defects. Practically,
    we show that our convex relaxation method achieves better and more reliable optima
    than previous work\r\nemploying alternative relaxations"
acknowledgement: "The authors thank Steven J. Gortler and Nicolas Boumal for interesting
  discussions.\r\nDavid Palmer acknowledges the generous support of the NSF\r\nMSPRF
  under award #2303403 during his time at Harvard University.\r\nNatalia Pacheco-Tallaj
  was supported by the NSF DGE-2141064.\r\nMattéo Couplet was supported by Wallonie-Bruxelles
  International"
article_processing_charge: No
author:
- first_name: Natalia
  full_name: Pacheco-Tallaj, Natalia
  last_name: Pacheco-Tallaj
- first_name: Matteo
  full_name: Couplet, Matteo
  last_name: Couplet
- first_name: Edward
  full_name: Chien, Edward
  last_name: Chien
- first_name: David
  full_name: Palmer, David
  id: 6574708f-2fd3-11f0-89e2-ae42ebc712a4
  last_name: Palmer
  orcid: 0000-0002-1931-5673
citation:
  ama: 'Pacheco-Tallaj N, Couplet M, Chien E, Palmer D. Synchronizing fields with
    singularities. In: <i>SIGGRAPH Conference Papers</i>. ACM; 2026. doi:<a href="https://doi.org/10.1145/3799902.3811225">10.1145/3799902.3811225</a>'
  apa: 'Pacheco-Tallaj, N., Couplet, M., Chien, E., &#38; Palmer, D. (2026). Synchronizing
    fields with singularities. In <i>SIGGRAPH Conference Papers</i>. Los Angeles,
    CA, United States: ACM. <a href="https://doi.org/10.1145/3799902.3811225">https://doi.org/10.1145/3799902.3811225</a>'
  chicago: Pacheco-Tallaj, Natalia, Matteo Couplet, Edward Chien, and David Palmer.
    “Synchronizing Fields with Singularities.” In <i>SIGGRAPH Conference Papers</i>.
    ACM, 2026. <a href="https://doi.org/10.1145/3799902.3811225">https://doi.org/10.1145/3799902.3811225</a>.
  ieee: N. Pacheco-Tallaj, M. Couplet, E. Chien, and D. Palmer, “Synchronizing fields
    with singularities,” in <i>SIGGRAPH Conference Papers</i>, Los Angeles, CA, United
    States, 2026.
  ista: 'Pacheco-Tallaj N, Couplet M, Chien E, Palmer D. 2026. Synchronizing fields
    with singularities. SIGGRAPH Conference Papers. SIGGRAPH: International Conference
    and Exhibition on Computer Graphics and Interactive Techniques.'
  mla: Pacheco-Tallaj, Natalia, et al. “Synchronizing Fields with Singularities.”
    <i>SIGGRAPH Conference Papers</i>, ACM, 2026, doi:<a href="https://doi.org/10.1145/3799902.3811225">10.1145/3799902.3811225</a>.
  short: N. Pacheco-Tallaj, M. Couplet, E. Chien, D. Palmer, in:, SIGGRAPH Conference
    Papers, ACM, 2026.
conference:
  end_date: 2026-07-23
  location: Los Angeles, CA, United States
  name: 'SIGGRAPH: International Conference and Exhibition on Computer Graphics and
    Interactive Techniques'
  start_date: 2026-07-19
corr_author: '1'
das_tickbox: '0'
date_created: 2026-05-29T12:53:59Z
date_published: 2026-06-01T00:00:00Z
date_updated: 2026-09-17T12:37:42Z
day: '01'
ddc:
- '000'
department:
- _id: ChWo
doi: 10.1145/3799902.3811225
file:
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fulldoi: https://doi.org/10.1145/3799902.3811225
has_accepted_license: '1'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '06'
oa: 1
oa_version: Published Version
publication: SIGGRAPH Conference Papers
publication_identifier:
  eisbn:
  - '9798400725548'
publication_status: published
publisher: ACM
quality_controlled: '1'
researchdata_availability: no
status: public
supplementarymaterial: no
title: Synchronizing fields with singularities
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  short: CC BY-NC-ND (4.0)
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year: '2026'
...
---
OA_place: publisher
_id: '22808'
abstract:
- lang: eng
  text: "As automated decision-makers have become ubiquitous in many domains of life,\r\ntheir
    decisions have become increasingly consequential. Recent years have shown\r\nthat
    such systems can exhibit discriminatory behaviour against individuals and\r\nsocial
    groups alike, thereby amplifying existing biases and entrenching\r\nsocio-economic
    disparities over time. Algorithmic fairness addresses this\r\nproblem by developing
    methods to quantify and mitigate unfair behaviour.\r\nHowever, much of the existing
    literature studies fairness in a static\r\npre-deployment setting and, therefore,
    neglects that automated decision-makers are\r\noften deployed in dynamic environments,
    where their behaviour and the\r\npopulations they affect may change over time.\r\n\r\nThis
    thesis addresses this gap through the lens of runtime verification.\r\nInstead
    of treating fairness as a property of a classifier together with a fixed\r\ninput
    distribution, it reframes fairness as a property of the interaction trace\r\nbetween
    the decision-maker and its deployment environment. To evaluate such\r\nsequential
    fairness properties, the thesis develops runtime monitors that\r\nobserve the
    evolving interaction between the system and the environment and\r\nissue verdicts
    after each new observation. Because, these monitors are designed to detect\r\nunfair
    behaviour during deployment, they complement fair training,\r\nauditing, verification,
    and enforcement by providing an additional layer of mathematically rigorous fairness
    assurance.\r\n\r\nIn summary, the thesis develops quantitative, trace-based analogues
    of\r\nclassical group and individual fairness measures and constructs monitors
    for\r\nthem. This includes monitors for long-run group fairness over Markovian
    traces,\r\nfor the time-varying welfare of a changing population in a dynamical
    system, and\r\nfor the individual fairness of an arbitrary system generating a
    trace of inputs\r\nand outputs. To achieve this, the monitors combine ideas from
    runtime\r\nverification, sequential statistics, and nearest-neighbour search.
    In the\r\ngroup-fairness settings, monitoring is primarily a sequential statistical\r\nestimation
    problem: the monitor must construct statistically sound interval\r\nestimates
    of fairness values from dependent and partially observed interactions.\r\nIn the
    individual-fairness setting, the main challenge is computational\r\nefficiency:
    the monitor must detect individual fairness violations by efficiently comparing
    the\r\ncurrent decision with all previously observed decisions.\r\n"
acknowledgement: "This work was supported in part by the ERC-2020-AdG 101020093 (VAMOS).\r\n"
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Konstantin
  full_name: Kueffner, Konstantin
  id: 8121a2d0-dc85-11ea-9058-af578f3b4515
  last_name: Kueffner
  orcid: 0000-0001-8974-2542
citation:
  ama: Kueffner K. Monitoring algorithmic fairness in sequential decision making.
    2026. doi:<a href="https://doi.org/10.15479/AT-ISTA-22808">10.15479/AT-ISTA-22808</a>
  apa: Kueffner, K. (2026). <i>Monitoring algorithmic fairness in sequential decision
    making</i>. Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT-ISTA-22808">https://doi.org/10.15479/AT-ISTA-22808</a>
  chicago: Kueffner, Konstantin. “Monitoring Algorithmic Fairness in Sequential Decision
    Making.” Institute of Science and Technology Austria, 2026. <a href="https://doi.org/10.15479/AT-ISTA-22808">https://doi.org/10.15479/AT-ISTA-22808</a>.
  ieee: K. Kueffner, “Monitoring algorithmic fairness in sequential decision making,”
    Institute of Science and Technology Austria, 2026.
  ista: Kueffner K. 2026. Monitoring algorithmic fairness in sequential decision making.
    Institute of Science and Technology Austria.
  mla: Kueffner, Konstantin. <i>Monitoring Algorithmic Fairness in Sequential Decision
    Making</i>. Institute of Science and Technology Austria, 2026, doi:<a href="https://doi.org/10.15479/AT-ISTA-22808">10.15479/AT-ISTA-22808</a>.
  short: K. Kueffner, Monitoring Algorithmic Fairness in Sequential Decision Making,
    Institute of Science and Technology Austria, 2026.
corr_author: '1'
date_created: 2026-09-05T15:59:19Z
date_published: 2026-09-07T00:00:00Z
date_updated: 2026-09-18T07:41:29Z
day: '07'
ddc:
- '000'
degree_awarded: PhD
department:
- _id: GradSch
- _id: ToHe
doi: 10.15479/AT-ISTA-22808
doi_confirm: '1'
ec_funded: 1
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fulldoi: https://doi.org/10.15479/AT-ISTA-22808
has_accepted_license: '1'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: '183'
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
publication_identifier:
  isbn:
  - 978-3-99078-089-3
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '13310'
    relation: part_of_dissertation
    status: public
  - id: '14454'
    relation: part_of_dissertation
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  - id: '20292'
    relation: part_of_dissertation
    status: public
  - id: '21090'
    relation: part_of_dissertation
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  - id: '13228'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
title: Monitoring algorithmic fairness in sequential decision making
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  short: CC BY (4.0)
type: dissertation
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2026'
...
---
OA_place: publisher
_id: '22873'
acknowledged_ssus:
- _id: ScienComp
- _id: CampIT
acknowledgement: I acknowledge funding by the Austrian Science Fund (FWF) [10.55776/PAT8537123].
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Andreas
  full_name: Ehrmann, Andreas
  id: eaa689ed-f6e0-11ea-865d-bd98cbcf83c2
  last_name: Ehrmann
  orcid: 0000-0002-0997-5678
citation:
  ama: 'Ehrmann A. Biological functionality without biochemistry: Designing nanomachines
    for target behavior. 2026. doi:<a href="https://doi.org/10.15479/AT-ISTA-22873">10.15479/AT-ISTA-22873</a>'
  apa: 'Ehrmann, A. (2026). <i>Biological functionality without biochemistry: Designing
    nanomachines for target behavior</i>. Institute of Science and Technology Austria.
    <a href="https://doi.org/10.15479/AT-ISTA-22873">https://doi.org/10.15479/AT-ISTA-22873</a>'
  chicago: 'Ehrmann, Andreas. “Biological Functionality without Biochemistry: Designing
    Nanomachines for Target Behavior.” Institute of Science and Technology Austria,
    2026. <a href="https://doi.org/10.15479/AT-ISTA-22873">https://doi.org/10.15479/AT-ISTA-22873</a>.'
  ieee: 'A. Ehrmann, “Biological functionality without biochemistry: Designing nanomachines
    for target behavior,” Institute of Science and Technology Austria, 2026.'
  ista: 'Ehrmann A. 2026. Biological functionality without biochemistry: Designing
    nanomachines for target behavior. Institute of Science and Technology Austria.'
  mla: 'Ehrmann, Andreas. <i>Biological Functionality without Biochemistry: Designing
    Nanomachines for Target Behavior</i>. Institute of Science and Technology Austria,
    2026, doi:<a href="https://doi.org/10.15479/AT-ISTA-22873">10.15479/AT-ISTA-22873</a>.'
  short: 'A. Ehrmann, Biological Functionality without Biochemistry: Designing Nanomachines
    for Target Behavior, Institute of Science and Technology Austria, 2026.'
corr_author: '1'
das_tickbox: '0'
date_created: 2026-09-09T12:18:24Z
date_published: 2026-09-04T00:00:00Z
date_updated: 2026-09-18T11:28:29Z
day: '04'
ddc:
- '530'
- '600'
- '621'
- '004'
- '005'
degree_awarded: PhD
department:
- _id: GradSch
- _id: CaGo
- _id: EdHa
doi: 10.15479/AT-ISTA-22873
doi_confirm: '1'
file:
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  checksum: a5e3d79e0e5f3f4fb3c414e48116dc9e
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  creator: aehrmann
  date_created: 2026-09-11T07:23:57Z
  date_updated: 2026-09-17T08:59:39Z
  embargo: 2027-01-15
  embargo_to: open_access
  file_id: '22901'
  file_name: 2026_Ehrmann_Andreas_Thesis.pdf
  file_size: 14782662
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  creator: aehrmann
  date_created: 2026-09-11T07:24:14Z
  date_updated: 2026-09-11T07:24:14Z
  description: All LaTeX files to compile my PhD Thesis.
  file_id: '22902'
  file_name: thesis_latex_files.zip
  file_size: 155228
  relation: source_file
file_date_updated: 2026-09-17T08:59:39Z
fulldoi: https://doi.org/10.15479/AT-ISTA-22873
has_accepted_license: '1'
keyword:
- PhD Thesis
- functional nanomachines
- biological functionality
- nanotechnology
- energy delivery
- target behavior
- dynamics
- design principles
- optimization
- differentiable statistical physics
- machine learning
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-sa/4.0/
month: '09'
oa_version: Published Version
page: '168'
project:
- _id: 90a98bb5-16d5-11f0-9cad-9675f3f8015d
  grant_number: PAT 8537123
  name: Functional bio-inspired nanomachines from sticky colloids
publication_identifier:
  isbn:
  - 978-3-99078-092-3
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '22893'
    relation: part_of_dissertation
    status: public
  - id: '22892'
    relation: part_of_dissertation
    status: public
researchdata_availability: upon request
status: public
supervisor:
- first_name: Carl Peter
  full_name: Goodrich, Carl Peter
  id: EB352CD2-F68A-11E9-89C5-A432E6697425
  last_name: Goodrich
  orcid: 0000-0002-1307-5074
- first_name: Edouard B
  full_name: Hannezo, Edouard B
  id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
  last_name: Hannezo
  orcid: 0000-0001-6005-1561
supplementarymaterial: not applicable
title: 'Biological functionality without biochemistry: Designing nanomachines for
  target behavior'
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  short: CC BY-NC-SA (4.0)
type: dissertation
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2026'
...
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abstract:
- lang: eng
  text: Many biological machines function through controlled conformational transitions,
    yet designing synthetic nanostructures with prescribed dynamical behavior remains
    a major challenge. Here, we develop a modular inverse-design framework for bistable
    nanostructures whose function is controlled by an energy profile along a geometric
    reaction coordinate. Inspired by proteins with rigid domains connected by flexible
    hinges, we introduce a hinge-arm paradigm in which a small bistable hinge controls
    the energetics of a conformational transition, while rigid arms map this transition
    onto the separation between external binding sites. Specifically, we ask which
    features of a target energy profile can be programmed under different design constraints.
    We find that the energy barriers and the binding-site separations in the two metastable
    states can be readily designed, while controlling the location of the transition
    state or the full shape of the energy profile requires additional design freedom.
    Using a differentiable design framework, we find that some optimized solutions
    are numerically inexact but still display the functional behavior for which the
    target profile was selected, emphasizing the importance of function-based evaluation
    criteria. These results establish a practical hierarchy of designability for bistable
    nanostructures and provide a route toward synthetic nanomachines that couple conformational
    transitions to target behavior.
acknowledgement: "We thank Maitane Muñoz-Basagoiti for stimulating\r\ndiscussions.
  This research was funded in part by the\r\nAustrian Science Fund (FWF) [10.55776/PAT8537123].\r\n"
article_processing_charge: No
arxiv: 1
author:
- first_name: Andreas
  full_name: Ehrmann, Andreas
  id: eaa689ed-f6e0-11ea-865d-bd98cbcf83c2
  last_name: Ehrmann
  orcid: 0000-0002-0997-5678
- first_name: Marija
  full_name: Krstić, Marija
  id: a8f6d1c6-3200-11ee-973b-dab948eace26
  last_name: Krstić
- first_name: Sahar
  full_name: Samadzadeh, Sahar
  id: 0099896b-5fb8-11ef-8420-b30b14627e93
  last_name: Samadzadeh
- first_name: Carl Peter
  full_name: Goodrich, Carl Peter
  id: EB352CD2-F68A-11E9-89C5-A432E6697425
  last_name: Goodrich
  orcid: 0000-0002-1307-5074
citation:
  ama: Ehrmann A, Krstić M, Samadzadeh S, Goodrich CP. Designing bistable nanostructures
    for target behavior. <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/arXiv.2606.31620">10.48550/arXiv.2606.31620</a>
  apa: Ehrmann, A., Krstić, M., Samadzadeh, S., &#38; Goodrich, C. P. (n.d.). Designing
    bistable nanostructures for target behavior. <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.2606.31620">https://doi.org/10.48550/arXiv.2606.31620</a>
  chicago: Ehrmann, Andreas, Marija Krstić, Sahar Samadzadeh, and Carl Peter Goodrich.
    “Designing Bistable Nanostructures for Target Behavior.” <i>ArXiv</i>, n.d. <a
    href="https://doi.org/10.48550/arXiv.2606.31620">https://doi.org/10.48550/arXiv.2606.31620</a>.
  ieee: A. Ehrmann, M. Krstić, S. Samadzadeh, and C. P. Goodrich, “Designing bistable
    nanostructures for target behavior,” <i>arXiv</i>. .
  ista: Ehrmann A, Krstić M, Samadzadeh S, Goodrich CP. Designing bistable nanostructures
    for target behavior. arXiv, <a href="https://doi.org/10.48550/arXiv.2606.31620">10.48550/arXiv.2606.31620</a>.
  mla: Ehrmann, Andreas, et al. “Designing Bistable Nanostructures for Target Behavior.”
    <i>ArXiv</i>, doi:<a href="https://doi.org/10.48550/arXiv.2606.31620">10.48550/arXiv.2606.31620</a>.
  short: A. Ehrmann, M. Krstić, S. Samadzadeh, C.P. Goodrich, ArXiv (n.d.).
corr_author: '1'
date_created: 2026-09-09T13:19:13Z
date_published: 2026-06-30T00:00:00Z
date_updated: 2026-09-18T11:28:28Z
day: '30'
department:
- _id: CaGo
- _id: EdHa
- _id: AnSa
doi: 10.48550/arXiv.2606.31620
external_id:
  arxiv:
  - '2606.31620'
fulldoi: https://doi.org/10.48550/arXiv.2606.31620
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2606.31620
month: '06'
oa: 1
oa_version: Preprint
project:
- _id: 90a98bb5-16d5-11f0-9cad-9675f3f8015d
  grant_number: PAT 8537123
  name: Functional bio-inspired nanomachines from sticky colloids
publication: arXiv
publication_status: draft
related_material:
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status: public
title: Designing bistable nanostructures for target behavior
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  short: CC BY-NC-ND (4.0)
type: preprint
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year: '2026'
...
---
OA_place: repository
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abstract:
- lang: eng
  text: 'Countless biological processes are fueled by energy-rich molecules like ATP
    and GTP that supply energy with extreme efficiency. However, designing similar
    energy-delivery schemes from the bottom up, essential for the development of powered
    nanostructures and other \emph{de novo} machinery, presents a significant challenge:
    how can an energy-rich structure be stable in solution yet still deliver this
    energy at precisely the right time? In this paper, we present a purely physical
    mechanism that solves this challenge, facilitating energy transfer akin to ATP
    hydrolysis, yet occurring between synthetic nanostructures without any biochemical
    interactions. This targeted energy delivery is achieved by exploiting a differentiable
    state-based model to balance the energy profiles that govern the structural transitions
    in the two nanostructures, creating a coupled relaxation pathway with minimal
    barriers that facilitates energy delivery. We verify the effectiveness and robustness
    of this mechanism through Langevin Dynamics simulations, demonstrating that a
    bath of the high-energy structures can systematically and repeatedly drive the
    target structure out of equilibrium, enabling it to perform tasks. As the mechanism
    operates only through explicit physical forces without any biochemistry or internal
    state variables, our results present generic and far-reaching design principles,
    setting the stage for the next generation of synthetic nanomachines.'
acknowledgement: "We thank Edouard Hannezo, Ella King, Maximilian Lechner, and Jérémie
  Palacci for stimulating discussions, and Edouard Hannezo, Maximilian Hübl, and\r\nMaitane
  Muñoz-Basagoiti for helpful comments on the manuscript. This research was funded
  in part by the\r\nAustrian Science Fund (FWF) [10.55776/PAT8537123]."
article_processing_charge: No
arxiv: 1
author:
- first_name: Andreas
  full_name: Ehrmann, Andreas
  id: eaa689ed-f6e0-11ea-865d-bd98cbcf83c2
  last_name: Ehrmann
  orcid: 0000-0002-0997-5678
- first_name: Carl Peter
  full_name: Goodrich, Carl Peter
  id: EB352CD2-F68A-11E9-89C5-A432E6697425
  last_name: Goodrich
  orcid: 0000-0002-1307-5074
citation:
  ama: Ehrmann A, Goodrich CP. Controlling energy delivery with bistable nanostructures.
    <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/arXiv.2506.14266">10.48550/arXiv.2506.14266</a>
  apa: Ehrmann, A., &#38; Goodrich, C. P. (n.d.). Controlling energy delivery with
    bistable nanostructures. <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.2506.14266">https://doi.org/10.48550/arXiv.2506.14266</a>
  chicago: Ehrmann, Andreas, and Carl Peter Goodrich. “Controlling Energy Delivery
    with Bistable Nanostructures.” <i>ArXiv</i>, n.d. <a href="https://doi.org/10.48550/arXiv.2506.14266">https://doi.org/10.48550/arXiv.2506.14266</a>.
  ieee: A. Ehrmann and C. P. Goodrich, “Controlling energy delivery with bistable
    nanostructures,” <i>arXiv</i>. .
  ista: Ehrmann A, Goodrich CP. Controlling energy delivery with bistable nanostructures.
    arXiv, <a href="https://doi.org/10.48550/arXiv.2506.14266">10.48550/arXiv.2506.14266</a>.
  mla: Ehrmann, Andreas, and Carl Peter Goodrich. “Controlling Energy Delivery with
    Bistable Nanostructures.” <i>ArXiv</i>, doi:<a href="https://doi.org/10.48550/arXiv.2506.14266">10.48550/arXiv.2506.14266</a>.
  short: A. Ehrmann, C.P. Goodrich, ArXiv (n.d.).
corr_author: '1'
date_created: 2026-09-09T13:16:54Z
date_published: 2026-06-07T00:00:00Z
date_updated: 2026-09-18T11:28:29Z
day: '07'
department:
- _id: CaGo
- _id: EdHa
doi: 10.48550/arXiv.2506.14266
external_id:
  arxiv:
  - '2506.14266'
fulldoi: https://doi.org/10.48550/arXiv.2506.14266
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2506.14266
month: '06'
oa: 1
oa_version: Preprint
project:
- _id: 90a98bb5-16d5-11f0-9cad-9675f3f8015d
  grant_number: PAT 8537123
  name: Functional bio-inspired nanomachines from sticky colloids
publication: arXiv
publication_status: draft
related_material:
  record:
  - id: '22873'
    relation: dissertation_contains
    status: public
status: public
title: Controlling energy delivery with bistable nanostructures
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: preprint
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2026'
...
---
OA_place: publisher
OA_type: gold
_id: '22894'
abstract:
- lang: eng
  text: "Large-scale deep learning models are known to memorize parts of the training\r\nset.
    In machine learning theory, memorization is often framed as interpolation or\r\nlabel
    fitting, and classical results show that this can be achieved when the number\r\nof
    parameters p in the model is larger than the number of training samples n. In\r\nthis
    work, we consider memorization from the perspective of data reconstruction,\r\ndemonstrating
    that this can be achieved when p is larger than dn, where d is\r\nthe dimensionality
    of the data. More specifically, we show that, in the random\r\nfeatures model,
    when p ≫ dn, the subspace spanned by the training samples in\r\nfeature space
    gives sufficient information to identify the individual samples in input\r\nspace.
    Our analysis suggests an optimization method to reconstruct the dataset\r\nfrom
    the model parameters, and we demonstrate that this method performs well on\r\nvarious
    architectures (random features, two-layer fully-connected and deep residual\r\nnetworks).
    Our results reveal a law of data reconstruction, according to which the\r\nentire
    training dataset can be recovered as p exceeds the threshold dn.\r\n"
acknowledgement: "M.M. is funded by the European Union (ERC, INF2\r\n, project number
  101161364). S.B. was supported\r\nby a Google PhD fellowship. L.I. acknowledges
  the grant received from the European Union NextGenerationEU (Piano Nazionale di
  Ripresa E Resilienza (PNRR)) DM 351 on Trustworthy AI. T.T. &\r\nL.I. acknowledge
  the EU project ELSA - European Lighthouse on Secure and Safe AI. This study was\r\ncarried
  out within the FAIR - Future Artificial Intelligence Research and received funding
  from the\r\nEuropean Union Next-GenerationEU (PIANO NAZIONALE DI RIPRESA E RESILIENZA
  (PNRR)\r\n– MISSIONE 4 COMPONENTE 2, INVESTIMENTO 1.3 – D.D. 1555 11/10/2022, PE00000013).\r\nThis
  manuscript reflects only the authors’ views and opinions, neither the European Union
  nor the\r\nEuropean Commission can be considered responsible for them. The authors
  would like to thank\r\nYizhe Zhu for helpful discussions."
article_processing_charge: No
arxiv: 1
author:
- first_name: Leonardo
  full_name: Iurada, Leonardo
  last_name: Iurada
- first_name: Simone
  full_name: Bombari, Simone
  id: ca726dda-de17-11ea-bc14-f9da834f63aa
  last_name: Bombari
- first_name: Tatiana
  full_name: Tommasi, Tatiana
  last_name: Tommasi
- first_name: Marco
  full_name: Mondelli, Marco
  id: 27EB676C-8706-11E9-9510-7717E6697425
  last_name: Mondelli
  orcid: 0000-0002-3242-7020
citation:
  ama: 'Iurada L, Bombari S, Tommasi T, Mondelli M. A law of data reconstruction for
    random features (and beyond). In: <i>14th International Conference on Learning
    Representations</i>. Vol 2026. OpenReview; 2026:145275-145314.'
  apa: 'Iurada, L., Bombari, S., Tommasi, T., &#38; Mondelli, M. (2026). A law of
    data reconstruction for random features (and beyond). In <i>14th International
    Conference on Learning Representations</i> (Vol. 2026, pp. 145275–145314). Rio
    de Janeiro, Brazil: OpenReview.'
  chicago: Iurada, Leonardo, Simone Bombari, Tatiana Tommasi, and Marco Mondelli.
    “A Law of Data Reconstruction for Random Features (and Beyond).” In <i>14th International
    Conference on Learning Representations</i>, 2026:145275–314. OpenReview, 2026.
  ieee: L. Iurada, S. Bombari, T. Tommasi, and M. Mondelli, “A law of data reconstruction
    for random features (and beyond),” in <i>14th International Conference on Learning
    Representations</i>, Rio de Janeiro, Brazil, 2026, vol. 2026, pp. 145275–145314.
  ista: 'Iurada L, Bombari S, Tommasi T, Mondelli M. 2026. A law of data reconstruction
    for random features (and beyond). 14th International Conference on Learning Representations.
    ICLR: International Conference on Learning Representations  vol. 2026, 145275–145314.'
  mla: Iurada, Leonardo, et al. “A Law of Data Reconstruction for Random Features
    (and Beyond).” <i>14th International Conference on Learning Representations</i>,
    vol. 2026, OpenReview, 2026, pp. 145275–314.
  short: L. Iurada, S. Bombari, T. Tommasi, M. Mondelli, in:, 14th International Conference
    on Learning Representations, OpenReview, 2026, pp. 145275–145314.
conference:
  end_date: 2026-04-27
  location: Rio de Janeiro, Brazil
  name: 'ICLR: International Conference on Learning Representations '
  start_date: 2026-04-23
corr_author: '1'
das_tickbox: '0'
date_created: 2026-09-09T13:31:46Z
date_published: 2026-01-26T00:00:00Z
date_updated: 2026-09-21T13:07:01Z
day: '26'
ddc:
- '000'
department:
- _id: GradSch
- _id: MaMo
external_id:
  arxiv:
  - '2509.22214'
file:
- access_level: open_access
  checksum: a3dcba6649b7496124fa0ae68bf2c4cb
  content_type: application/pdf
  creator: cchlebak
  date_created: 2026-09-11T12:07:48Z
  date_updated: 2026-09-11T12:07:48Z
  file_id: '22907'
  file_name: 2026_ICLR_Iurada.pdf
  file_size: 7869510
  relation: main_file
  success: 1
file_date_updated: 2026-09-11T12:07:48Z
has_accepted_license: '1'
intvolume: '      2026'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 145275-145314
project:
- _id: 911e6d1f-16d5-11f0-9cad-c5c68c6a1cdf
  grant_number: '101161364'
  name: 'Inference in High Dimensions: Light-speed Algorithms and Information Limits'
- _id: 92099302-16d5-11f0-9cad-f9a785f54fbd
  name: 'Trustworthy Deep Learning Theory: Private Over-Parameterized Models and Robust
    LLMs'
publication: 14th International Conference on Learning Representations
publication_identifier:
  isbn:
  - '9798331339678'
publication_status: published
publisher: OpenReview
quality_controlled: '1'
related_material:
  record:
  - id: '22857'
    relation: dissertation_contains
    status: public
status: public
title: A law of data reconstruction for random features (and beyond)
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 2026
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '22950'
abstract:
- lang: eng
  text: 'Little red dots (LRDs) are compact, red sources discovered by JWST at high
    redshift (z ≳ 4), marked by distinctive “V-shaped” spectral energy distributions
    (SEDs) and often interpreted as rapidly accreting active galactic nuclei (AGNs).
    Their true nature remains unclear though, and their evolutionary connection to
    their lower-redshift counterparts is still poorly constrained. Thus, we present
    WISEA J123635.56+621424.2 (here dubbed the Saguaro), a z = 2.0145 galaxy in GOODS-North,
    as a possible analog of high-redshift LRDs and a potential missing link in their
    evolutionary path toward lower-redshift systems. It features a compact LRD-like
    nucleus surrounded by a face-on spiral host. Its connections to LRDs include the
    following: (1) its nuclear spectrum shows a clear “V-shaped” SED, and (2) when
    redshifted to z = 7, surface brightness dimming makes the host undetectable, thus
    mimicking an LRD. This suggests that high-redshift LRDs may be embedded in extended
    hosts. To test this, we stack rest-frame UV images of 99 photometrically selected
    LRDs, revealing faint, diffuse emission. Stacking in redshift bins reveals mild
    radial growth, consistent with the expected galaxy size evolution. A simple analytic
    model confirms that surface brightness dimming alone can explain their compact
    appearance. Lastly, we show that the Saguaro is not unique by describing similar
    objects from the literature at z ≲ 3.5. Taken together, our results support a
    scenario in which LRDs may not be a distinct population, but could be the visible
    nuclei of galaxies undergoing a short-lived, (perhaps) AGN-dominated evolutionary
    phase, with their compact, red appearance driven largely by observational biases.'
acknowledgement: "The authors thank the anonymous referee for constructive comments,
  which helped improve the manuscript. The authors also thank Xiaohui Fan, Xiaojing
  Lin, Camilla Pacifici, Marianna Annunziatella, Claudia Scarlata, Luis C. Ho, and
  Pablo G. Pérez-González for valuable discussions.\r\n\r\nThis work is based on observations
  made with the NASA/ESA/CSA JWST. The data were obtained from the Mikulski Archive
  for Space Telescopes (MAST) at the Space Telescope Science Institute, which is operated
  by the Association of Universities for Research in Astronomy, Inc., under NASA contract
  NAS 5-03127 for JWST. These observations are associated with JWST programs GTO #1181,
  GTO #1211, GO #1895, GO #3577, and GO #6434 (F. Sun et al. 2025).\r\n\r\nSome of
  the data products presented herein were retrieved from the Dawn JWST Archive (DJA).
  DJA is an initiative of the Cosmic Dawn Center (DAWN), which is funded by the Danish
  National Research Foundation under grant DNRF140.\r\n\r\nThis research has made
  use of data obtained from the Chandra Data Archive provided by the Chandra X-ray
  Center (CXC).\r\n\r\nThe authors acknowledge the FRESCO team led by PI P. Oesch
  for developing their observing program with a zero-exclusive-access period. Processing
  for the JADES NIRCam data release was performed on the lux cluster at the University
  of California, Santa Cruz, funded by NSF MRI grant AST 1828315. Also based on observations
  made with the NASA/ESA Hubble Space Telescope obtained from the Space Telescope
  Science Institute, which is operated by the Association of Universities for Research
  in Astronomy, Inc., under NASA contract NAS 526555. The data (G. Illingworth 2015;
  P. Oesch & D. Magee 2023; M. Rieke et al. 2023a; F. Sun & E. Egami 2025) presented
  in this article were obtained from MAST at the Space Telescope Science Institute.\r\n\r\nThe
  authors acknowledge use of the lux supercomputer at UC Santa Cruz, funded by NSF
  MRI grant AST 1828315.\r\n\r\nThe work of G.H.R. and P.R. was also supported by
  grant 80NSSC18K0555, from NASA Goddard Space Flight Center to the University of
  Arizona.\r\n\r\nA.J.B. acknowledges funding from the “FirstGalaxies” Advanced grant
  from the European Research Council (ERC) under the European Union’s Horizon 2020
  research and innovation program (grant agreement No. 789056)\r\n\r\nB.E.R. acknowledges
  support from the NIRCam Science Team contract to the University of Arizona, NAS5-02015,
  and JWST Program 3215.\r\n\r\nThe research of C.C.W. is supported by NOIRLab, which
  is managed by the Association of Universities for Research in Astronomy (AURA) under
  a cooperative agreement with the National Science Foundation.\r\n\r\nS.C. acknowledges
  support by the European Union’s HE ERC Starting grant No. 101040227 - WINGS.\r\n\r\nY.Z.,
  Z.J., B.D.J., C.N.A.W., and P.R. gratefully acknowledge the JWST/NIRCam contract
  to the University of Arizona NAS5-02015.\r\n\r\nS.A. acknowledges support from the
  JWST Mid-Infrared Instrument (MIRI) Science Team Lead, grant 80NSSC18K0555, from
  NASA Goddard Space Flight Center to the University of Arizona.\r\n\r\nR.M., F.D.E.
  acknowledge support by the Science and Technology Facilities Council (STFC), by
  the ERC through Advanced grant 695671 “QUENCH,” and by the UKRI Frontier Research
  grant RISEandFALL. R.M. also acknowledges funding from a research professorship
  from the Royal Society.\r\n\r\nL.B. acknowledges financial support from the Inter-University
  Institute for Data Intensive Astronomy (IDIA), a partnership of the University of
  Cape Town, the University of Pretoria and the University of the Western Cape, and
  from the South African Department of Science and Innovation’s National Research
  Foundation under the ISARP RADIOMAP+ Joint Research Scheme (DSI-NRF grant No. 150551)
  and the CPRR HIPPO Project (DSI-NRF grant No. SRUG22031677). C.J.E.G. acknowledges
  the financial assistance of the South African Radio Astronomy Observatory (SARAO)
  (www.sarao.ac.za)."
article_number: '205'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Pierluigi
  full_name: Rinaldi, Pierluigi
  last_name: Rinaldi
- first_name: George H.
  full_name: Rieke, George H.
  last_name: Rieke
- first_name: Zihao
  full_name: Wu, Zihao
  last_name: Wu
- first_name: Carys J. E.
  full_name: Gilbert, Carys J. E.
  last_name: Gilbert
- first_name: Fabio
  full_name: Pacucci, Fabio
  last_name: Pacucci
- first_name: Luigi
  full_name: Barchiesi, Luigi
  last_name: Barchiesi
- first_name: Stacey
  full_name: Alberts, Stacey
  last_name: Alberts
- first_name: Stefano
  full_name: Carniani, Stefano
  last_name: Carniani
- first_name: Andrew J.
  full_name: Bunker, Andrew J.
  last_name: Bunker
- first_name: Rachana
  full_name: Bhatawdekar, Rachana
  last_name: Bhatawdekar
- first_name: Francesco
  full_name: D’Eugenio, Francesco
  last_name: D’Eugenio
- first_name: Zhiyuan
  full_name: Ji, Zhiyuan
  last_name: Ji
- first_name: Benjamin D.
  full_name: Johnson, Benjamin D.
  last_name: Johnson
- first_name: Kevin
  full_name: Hainline, Kevin
  last_name: Hainline
- first_name: Vasily
  full_name: Kokorev, Vasily
  last_name: Kokorev
- first_name: Nimisha
  full_name: Kumari, Nimisha
  last_name: Kumari
- first_name: Edoardo
  full_name: Iani, Edoardo
  id: 4053390a-6b68-11ef-9828-a3b8adef8d0a
  last_name: Iani
  orcid: 0000-0001-8386-3546
- first_name: Jianwei
  full_name: Lyu, Jianwei
  last_name: Lyu
- first_name: Roberto
  full_name: Maiolino, Roberto
  last_name: Maiolino
- first_name: Eleonora
  full_name: Parlanti, Eleonora
  last_name: Parlanti
- first_name: Brant E.
  full_name: Robertson, Brant E.
  last_name: Robertson
- first_name: Yang
  full_name: Sun, Yang
  last_name: Sun
- first_name: Cristian
  full_name: Vignali, Cristian
  last_name: Vignali
- first_name: Christina C.
  full_name: Williams, Christina C.
  last_name: Williams
- first_name: Christopher N. A.
  full_name: Willmer, Christopher N. A.
  last_name: Willmer
- first_name: Yongda
  full_name: Zhu, Yongda
  last_name: Zhu
citation:
  ama: 'Rinaldi P, Rieke GH, Wu Z, et al. Beyond the dot: An LRD-like nucleus at the
    heart of an IR-bright galaxy and its implications for high-redshift LRDs. <i>The
    Astrophysical Journal</i>. 2026;1006(2). doi:<a href="https://doi.org/10.3847/1538-4357/ae80cd">10.3847/1538-4357/ae80cd</a>'
  apa: 'Rinaldi, P., Rieke, G. H., Wu, Z., Gilbert, C. J. E., Pacucci, F., Barchiesi,
    L., … Zhu, Y. (2026). Beyond the dot: An LRD-like nucleus at the heart of an IR-bright
    galaxy and its implications for high-redshift LRDs. <i>The Astrophysical Journal</i>.
    IOP Publishing. <a href="https://doi.org/10.3847/1538-4357/ae80cd">https://doi.org/10.3847/1538-4357/ae80cd</a>'
  chicago: 'Rinaldi, Pierluigi, George H. Rieke, Zihao Wu, Carys J. E. Gilbert, Fabio
    Pacucci, Luigi Barchiesi, Stacey Alberts, et al. “Beyond the Dot: An LRD-like
    Nucleus at the Heart of an IR-Bright Galaxy and Its Implications for High-Redshift
    LRDs.” <i>The Astrophysical Journal</i>. IOP Publishing, 2026. <a href="https://doi.org/10.3847/1538-4357/ae80cd">https://doi.org/10.3847/1538-4357/ae80cd</a>.'
  ieee: 'P. Rinaldi <i>et al.</i>, “Beyond the dot: An LRD-like nucleus at the heart
    of an IR-bright galaxy and its implications for high-redshift LRDs,” <i>The Astrophysical
    Journal</i>, vol. 1006, no. 2. IOP Publishing, 2026.'
  ista: 'Rinaldi P, Rieke GH, Wu Z, Gilbert CJE, Pacucci F, Barchiesi L, Alberts S,
    Carniani S, Bunker AJ, Bhatawdekar R, D’Eugenio F, Ji Z, Johnson BD, Hainline
    K, Kokorev V, Kumari N, Iani E, Lyu J, Maiolino R, Parlanti E, Robertson BE, Sun
    Y, Vignali C, Williams CC, Willmer CNA, Zhu Y. 2026. Beyond the dot: An LRD-like
    nucleus at the heart of an IR-bright galaxy and its implications for high-redshift
    LRDs. The Astrophysical Journal. 1006(2), 205.'
  mla: 'Rinaldi, Pierluigi, et al. “Beyond the Dot: An LRD-like Nucleus at the Heart
    of an IR-Bright Galaxy and Its Implications for High-Redshift LRDs.” <i>The Astrophysical
    Journal</i>, vol. 1006, no. 2, 205, IOP Publishing, 2026, doi:<a href="https://doi.org/10.3847/1538-4357/ae80cd">10.3847/1538-4357/ae80cd</a>.'
  short: P. Rinaldi, G.H. Rieke, Z. Wu, C.J.E. Gilbert, F. Pacucci, L. Barchiesi,
    S. Alberts, S. Carniani, A.J. Bunker, R. Bhatawdekar, F. D’Eugenio, Z. Ji, B.D.
    Johnson, K. Hainline, V. Kokorev, N. Kumari, E. Iani, J. Lyu, R. Maiolino, E.
    Parlanti, B.E. Robertson, Y. Sun, C. Vignali, C.C. Williams, C.N.A. Willmer, Y.
    Zhu, The Astrophysical Journal 1006 (2026).
das_tickbox: '1'
dataavailabilitystatement: "Facilities: CXO - Chandra X-ray Observatory satellite,
  HST - Hubble Space Telescope satellite, JWST - James Webb Space Telescope.\r\n\r\nSoftware:
  Astropy (Astropy Collaboration et al. 2022), Bagpipes (A. C. Carnall et al. 2019),
  MSAEXP (G. Brammer 2023)NumPy (C. R. Harris et al. 2020), pandas (T. p. d team 2024)Photutils
  (L. Bradley et al. 2016), TOPCAT (M. Taylor 2022), CIAO (A. Fruscione et al. 2006),
  XSpec (K. Arnaud et al. 1999), STPSF (M. D. Perrin et al. 2014)."
date_created: 2026-09-17T11:05:32Z
date_published: 2026-07-29T00:00:00Z
date_updated: 2026-09-22T06:14:37Z
day: '29'
ddc:
- '520'
department:
- _id: JoMa
doi: 10.3847/1538-4357/ae80cd
external_id:
  arxiv:
  - '2507.17738'
file:
- access_level: open_access
  checksum: ef77723c7b0fa7f82085eba8caec0cf3
  content_type: application/pdf
  creator: dernst
  date_created: 2026-09-22T06:13:50Z
  date_updated: 2026-09-22T06:13:50Z
  file_id: '22979'
  file_name: 2026_AstrophysicalJour_Rinaldi.pdf
  file_size: 6154775
  relation: main_file
  success: 1
file_date_updated: 2026-09-22T06:13:50Z
fulldoi: https://doi.org/10.3847/1538-4357/ae80cd
has_accepted_license: '1'
intvolume: '      1006'
issue: '2'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
publication: The Astrophysical Journal
publication_identifier:
  eissn:
  - 1538-4357
  issn:
  - 0004-637X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: yes
title: 'Beyond the dot: An LRD-like nucleus at the heart of an IR-bright galaxy and
  its implications for high-redshift LRDs'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1006
year: '2026'
...
---
OA_place: publisher
OA_type: gold
_id: '22921'
abstract:
- lang: eng
  text: 'Runtime monitoring of quantitative signals faces a fundamental trade-off
    between volatility and over-aggregation: instantaneous observations are noisy,
    while long-run averages obscure local structure. Localisation measures such as
    discounted averages offer a principled middle ground, yet remain poorly understood
    in runtime verification. This paper studies discounted sums from a monitoring
    perspective, in both deterministic and stochastic settings. We formalize the discounted
    monitoring problem and show that exact, sound monitoring of discounted sums cannot
    be achieved with finite memory. To overcome this impossibility, we introduce ε-approximately
    sound monitoring, deriving explicit bounds on memory and observation requirements.
    We then extend the framework to stochastic processes via expected discounted sums,
    defining pointwise and uniform (ε,δ)-soundness notions, establishing statistical
    optimality, and proving impossibility beyond a precision threshold. We also formalize
    the resource complexity of deterministic discounted monitoring via affine register
    machines and prove a tight worst-case lower bound. Finally, we present a specification
    language for arithmetic expressions over multiple discounted sums with synchronous
    and asynchronous semantics, and evaluate our approach on practical scenarios including
    algorithmic fairness.'
acknowledgement: "This work has been supported by the European Research Council under
  Grant No.: ERC2020-AdG 101020093 and ERC-2021-AdG 101055412.\r\nFilip Cano: ERC-2020-AdG
  101020093\r\nThomas A. Henzinger: ERC-2020-AdG 101020093\r\nKonstantin Kueffner:
  ERC-2020-AdG 101020093\r\nN. Ege Saraç: ERC-2021-AdG 101055412"
alternative_title:
- LIPIcs
article_number: 22:1-22:19
article_processing_charge: Yes
arxiv: 1
author:
- first_name: Filip
  full_name: Cano Cordoba, Filip
  id: 708cad98-e86a-11ef-8098-bdae2d7c6af1
  last_name: Cano Cordoba
  orcid: 0000-0002-0783-904X
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
- first_name: Konstantin
  full_name: Kueffner, Konstantin
  id: 8121a2d0-dc85-11ea-9058-af578f3b4515
  last_name: Kueffner
  orcid: 0000-0001-8974-2542
- first_name: Naci E
  full_name: Sarac, Naci E
  id: 8C6B42F8-C8E6-11E9-A03A-F2DCE5697425
  last_name: Sarac
citation:
  ama: 'Cano Cordoba F, Henzinger TA, Kueffner K, Sarac NE. Monitoring discounted
    sum properties. In: <i>37th International Conference on Concurrency Theory</i>.
    Vol 391. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2026. doi:<a href="https://doi.org/10.4230/LIPIcs.CONCUR.2026.22">10.4230/LIPIcs.CONCUR.2026.22</a>'
  apa: 'Cano Cordoba, F., Henzinger, T. A., Kueffner, K., &#38; Sarac, N. E. (2026).
    Monitoring discounted sum properties. In <i>37th International Conference on Concurrency
    Theory</i> (Vol. 391). Liverpool, United Kingdom: Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik. <a href="https://doi.org/10.4230/LIPIcs.CONCUR.2026.22">https://doi.org/10.4230/LIPIcs.CONCUR.2026.22</a>'
  chicago: Cano Cordoba, Filip, Thomas A Henzinger, Konstantin Kueffner, and Naci
    E Sarac. “Monitoring Discounted Sum Properties.” In <i>37th International Conference
    on Concurrency Theory</i>, Vol. 391. Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
    2026. <a href="https://doi.org/10.4230/LIPIcs.CONCUR.2026.22">https://doi.org/10.4230/LIPIcs.CONCUR.2026.22</a>.
  ieee: F. Cano Cordoba, T. A. Henzinger, K. Kueffner, and N. E. Sarac, “Monitoring
    discounted sum properties,” in <i>37th International Conference on Concurrency
    Theory</i>, Liverpool, United Kingdom, 2026, vol. 391.
  ista: 'Cano Cordoba F, Henzinger TA, Kueffner K, Sarac NE. 2026. Monitoring discounted
    sum properties. 37th International Conference on Concurrency Theory. CONCUR: Conference
    on Concurrency Theory, LIPIcs, vol. 391, 22:1-22:19.'
  mla: Cano Cordoba, Filip, et al. “Monitoring Discounted Sum Properties.” <i>37th
    International Conference on Concurrency Theory</i>, vol. 391, 22:1-22:19, Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik, 2026, doi:<a href="https://doi.org/10.4230/LIPIcs.CONCUR.2026.22">10.4230/LIPIcs.CONCUR.2026.22</a>.
  short: F. Cano Cordoba, T.A. Henzinger, K. Kueffner, N.E. Sarac, in:, 37th International
    Conference on Concurrency Theory, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
    2026.
conference:
  end_date: 2026-09-04
  location: Liverpool, United Kingdom
  name: 'CONCUR: Conference on Concurrency Theory'
  start_date: 2026-09-01
corr_author: '1'
das_tickbox: '1'
dataavailabilitystatement: "Software (Source Code): https://github.com/filipcano/monitoringdiscounted-sum-properties
  [10]\r\narchived at swh:1:dir:cb99396415f279c985cd05206b44320227f64245\r\n"
date_created: 2026-09-13T22:01:54Z
date_published: 2026-08-24T00:00:00Z
date_updated: 2026-09-22T06:02:06Z
day: '24'
ddc:
- '000'
department:
- _id: ToHe
- _id: GradSch
doi: 10.4230/LIPIcs.CONCUR.2026.22
ec_funded: 1
external_id:
  arxiv:
  - '2606.25979'
file:
- access_level: open_access
  checksum: f7b2e22428344fd7972c54f099df6aba
  content_type: application/pdf
  creator: dernst
  date_created: 2026-09-22T05:59:03Z
  date_updated: 2026-09-22T05:59:03Z
  file_id: '22978'
  file_name: 2026_LIPIcsCONCUR_Cano.pdf
  file_size: 997156
  relation: main_file
  success: 1
file_date_updated: 2026-09-22T05:59:03Z
fulldoi: https://doi.org/10.4230/LIPIcs.CONCUR.2026.22
has_accepted_license: '1'
intvolume: '       391'
keyword:
- Runtime Verification
- Probabilistic Systems
- Quantitative Verification
- Approximate Monitoring
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
publication: 37th International Conference on Concurrency Theory
publication_identifier:
  isbn:
  - '9783959774475'
  issn:
  - 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: no
title: Monitoring discounted sum properties
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 391
year: '2026'
...
---
OA_place: publisher
OA_type: gold
_id: '22922'
abstract:
- lang: eng
  text: In this note, we recall the history and our motivation behind the development
    of Strategy Logic and we discuss some of the work that ensued from its introduction.
acknowledgement: " Krishnendu Chatterjee: Supported in part by the Austrian Science
  Fund (FWF) COE\r\ngrant 10.55776/COE12 and the ERC CoG 863818 (ForM-SMArt).\r\nThomas
  A. Henzinger: Supported in part by the ERC AdG 101020093 (VAMOS) and the FWF\r\nSFB
  grant F8502 (SPyCoDe).\r\nNir Piterman: Supported in part by the Swedish research
  council (VR) project no. 2025-05419 and\r\nthe Wallenberg AI, Autonomous Systems
  and Software Program (WASP) funded by the Knut and\r\nAlice Wallenberg Foundation.\r\nAcknowledgements
  We thank the jury that our paper introducing Strategy Logic at the Conference\r\non
  Concurrency Theory (CONCUR) 2007 [10] was chosen for a CONCUR Test-of-Time Award
  at\r\nCONCUR 2026."
alternative_title:
- LIPIcs
article_number: 6:1-6:7
article_processing_charge: Yes
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
- first_name: Nir
  full_name: Piterman, Nir
  last_name: Piterman
citation:
  ama: 'Chatterjee K, Henzinger TA, Piterman N. A look back at strategy logic. In:
    <i>37th International Conference on Concurrency Theory</i>. Vol 391. Schloss Dagstuhl
    - Leibniz-Zentrum für Informatik; 2026. doi:<a href="https://doi.org/10.4230/LIPIcs.CONCUR.2026.6">10.4230/LIPIcs.CONCUR.2026.6</a>'
  apa: 'Chatterjee, K., Henzinger, T. A., &#38; Piterman, N. (2026). A look back at
    strategy logic. In <i>37th International Conference on Concurrency Theory</i>
    (Vol. 391). Liverpool, United Kingdom: Schloss Dagstuhl - Leibniz-Zentrum für
    Informatik. <a href="https://doi.org/10.4230/LIPIcs.CONCUR.2026.6">https://doi.org/10.4230/LIPIcs.CONCUR.2026.6</a>'
  chicago: Chatterjee, Krishnendu, Thomas A Henzinger, and Nir Piterman. “A Look Back
    at Strategy Logic.” In <i>37th International Conference on Concurrency Theory</i>,
    Vol. 391. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2026. <a href="https://doi.org/10.4230/LIPIcs.CONCUR.2026.6">https://doi.org/10.4230/LIPIcs.CONCUR.2026.6</a>.
  ieee: K. Chatterjee, T. A. Henzinger, and N. Piterman, “A look back at strategy
    logic,” in <i>37th International Conference on Concurrency Theory</i>, Liverpool,
    United Kingdom, 2026, vol. 391.
  ista: 'Chatterjee K, Henzinger TA, Piterman N. 2026. A look back at strategy logic.
    37th International Conference on Concurrency Theory. CONCUR: Conference on Concurrency
    Theory, LIPIcs, vol. 391, 6:1-6:7.'
  mla: Chatterjee, Krishnendu, et al. “A Look Back at Strategy Logic.” <i>37th International
    Conference on Concurrency Theory</i>, vol. 391, 6:1-6:7, Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, 2026, doi:<a href="https://doi.org/10.4230/LIPIcs.CONCUR.2026.6">10.4230/LIPIcs.CONCUR.2026.6</a>.
  short: K. Chatterjee, T.A. Henzinger, N. Piterman, in:, 37th International Conference
    on Concurrency Theory, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2026.
conference:
  end_date: 2026-09-04
  location: Liverpool, United Kingdom
  name: 'CONCUR: Conference on Concurrency Theory'
  start_date: 2026-09-01
corr_author: '1'
das_tickbox: '0'
date_created: 2026-09-13T22:01:54Z
date_published: 2026-08-24T00:00:00Z
date_updated: 2026-09-22T05:54:30Z
day: '24'
ddc:
- '000'
department:
- _id: KrCh
- _id: ToHe
doi: 10.4230/LIPIcs.CONCUR.2026.6
ec_funded: 1
file:
- access_level: open_access
  checksum: f3995df175701f56a702bdb012e4f710
  content_type: application/pdf
  creator: dernst
  date_created: 2026-09-22T05:53:16Z
  date_updated: 2026-09-22T05:53:16Z
  file_id: '22977'
  file_name: 2026_LIPIcsCONCUR_Chatterjee.pdf
  file_size: 517651
  relation: main_file
  success: 1
file_date_updated: 2026-09-22T05:53:16Z
fulldoi: https://doi.org/10.4230/LIPIcs.CONCUR.2026.6
has_accepted_license: '1'
intvolume: '       391'
keyword:
- Strategy Logic
- Games
- Automata
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: 4029cfc7-b034-11f1-9e55-88ab2ff3b6ee
  grant_number: COE12
  name: Bilateral Artificial Intelligence (Chatterjee)
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
  call_identifier: H2020
  grant_number: '863818'
  name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
- _id: 34a1b658-11ca-11ed-8bc3-c75229f0241e
  grant_number: F8502
  name: Interface Theory for Security and Privacy
publication: 37th International Conference on Concurrency Theory
publication_identifier:
  isbn:
  - '9783959774475'
  issn:
  - 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: no
title: A look back at strategy logic
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 391
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '22951'
abstract:
- lang: eng
  text: Anesthesia recovery is critical for resuming normal physiological and neuronal
    functions; however, the mechanisms involved remain elusive. Here, we identify
    a female-selective corticosterone-mediated microglia-neuron interaction during
    ketamine anesthesia recovery, absent in males. This microglia-neuron interaction
    induces plastic and functional neuronal changes, as evidenced by increased mEPSC
    frequency, which was occluded upon microglia depletion. We showed that this process
    is driven through up-regulation of the stress-responsive co-chaperone Fkbp5 mRNA
    and its protein, Fkbp51, in female microglia. Fkbp5/Fkbp51 is a key intermediary
    in a corticosteroid-induced stress response, and its involvement points toward
    a critical interface between endocrine signaling and microglia. To counteract
    the observed ketamine anesthesia-mediated increase in blood corticosterone during
    recovery, we removed the primary source of corticosterone by adrenalectomy. Close
    microglia-neuron interaction was reduced and increased again following corticosterone
    injection. Our findings identify a sex-specific microglia-mediated mechanism of
    neuronal plasticity during anesthesia recovery, driven by corticosterone, thereby
    enhancing our understanding of sex differences in brain function.
acknowledged_ssus:
- _id: Bio
- _id: M-Shop
- _id: PreCl
- _id: LifeSc
acknowledgement: "We thank the scientific service units at ISTA, especially the imaging
  optic facility (IOF), the machine shop (Miba), specifically T. Asenov, the preclinical
  facility (PCF), specifically M. Schunn and S. Haslinger, C. Jansen for bioinformatic
  support, and the laboratory support facility (LSF). We also thank M. Benevento for
  supporting the design and partial performance of electrophysiology and fluorescence
  in situ hybridization experiments and for extensive discussions about the manuscript
  draft, R. Schulz and G. Colombo for advice on morphological reconstruction, M. Schmidt
  for valuable discussions about Fkbp5, and all Siegert team members for constant
  feedback on the project and manuscript. Grammarly was used to assist with grammatical
  revisions. We specifically acknowledge the following experimental contributions:
  R.J.A.C. (Multiome quality control), P.K. (electrophysiology), B.T., C.T.J.V., K.J.
  (multiome), J.Y. (KXA estimates), M.A. and T.N. (morphOMICs).\r\nA.V., M.A., T.N.,
  R.J.A.C., J.Y., P.K., and S.S. were supported by the Institute of Science and Technology
  Austria. C.T.J.V., K.J., and B.T. were supported by the Allen Institute."
article_number: eadz6517
article_processing_charge: Yes
article_type: original
author:
- first_name: Alessandro
  full_name: Venturino, Alessandro
  id: 41CB84B2-F248-11E8-B48F-1D18A9856A87
  last_name: Venturino
  orcid: 0000-0003-2356-9403
- first_name: Amin
  full_name: Alam, Amin
  id: 65a3f615-b651-11f1-9c4b-da4396a4174a
  last_name: Alam
- first_name: Thomas
  full_name: Negrello, Thomas
  id: 37d68bf2-b651-11f1-b680-ec86ff9a70f3
  last_name: Negrello
- first_name: Kelly
  full_name: Jin, Kelly
  last_name: Jin
- first_name: Cindy T. J.
  full_name: van Velthoven, Cindy T. J.
  last_name: van Velthoven
- first_name: Ryan J
  full_name: Cubero, Ryan J
  id: 850B2E12-9CD4-11E9-837F-E719E6697425
  last_name: Cubero
  orcid: 0000-0003-0002-1867
- first_name: Jake
  full_name: Yeung, Jake
  id: 123012b2-db30-11eb-b4d8-a35840c0551b
  last_name: Yeung
  orcid: 0000-0003-1732-1559
- first_name: Peter
  full_name: Koppensteiner, Peter
  id: 3B8B25A8-F248-11E8-B48F-1D18A9856A87
  last_name: Koppensteiner
  orcid: 0000-0002-3509-1948
- first_name: Bosiljka
  full_name: Tasic, Bosiljka
  last_name: Tasic
- first_name: Sandra
  full_name: Siegert, Sandra
  id: 36ACD32E-F248-11E8-B48F-1D18A9856A87
  last_name: Siegert
  orcid: 0000-0001-8635-0877
citation:
  ama: Venturino A, Alam A, Negrello T, et al. Corticosterone-linked microglial activity
    underpins sexually dimorphic neuroplasticity after ketamine anesthesia. <i>Science
    Advances</i>. 2026;12(31). doi:<a href="https://doi.org/10.1126/sciadv.adz6517">10.1126/sciadv.adz6517</a>
  apa: Venturino, A., Alam, A., Negrello, T., Jin, K., van Velthoven, C. T. J., Cubero,
    R. J., … Siegert, S. (2026). Corticosterone-linked microglial activity underpins
    sexually dimorphic neuroplasticity after ketamine anesthesia. <i>Science Advances</i>.
    AAAS. <a href="https://doi.org/10.1126/sciadv.adz6517">https://doi.org/10.1126/sciadv.adz6517</a>
  chicago: Venturino, Alessandro, Amin Alam, Thomas Negrello, Kelly Jin, Cindy T.
    J. van Velthoven, Ryan J Cubero, Jake Yeung, Peter Koppensteiner, Bosiljka Tasic,
    and Sandra Siegert. “Corticosterone-Linked Microglial Activity Underpins Sexually
    Dimorphic Neuroplasticity after Ketamine Anesthesia.” <i>Science Advances</i>.
    AAAS, 2026. <a href="https://doi.org/10.1126/sciadv.adz6517">https://doi.org/10.1126/sciadv.adz6517</a>.
  ieee: A. Venturino <i>et al.</i>, “Corticosterone-linked microglial activity underpins
    sexually dimorphic neuroplasticity after ketamine anesthesia,” <i>Science Advances</i>,
    vol. 12, no. 31. AAAS, 2026.
  ista: Venturino A, Alam A, Negrello T, Jin K, van Velthoven CTJ, Cubero RJ, Yeung
    J, Koppensteiner P, Tasic B, Siegert S. 2026. Corticosterone-linked microglial
    activity underpins sexually dimorphic neuroplasticity after ketamine anesthesia.
    Science Advances. 12(31), eadz6517.
  mla: Venturino, Alessandro, et al. “Corticosterone-Linked Microglial Activity Underpins
    Sexually Dimorphic Neuroplasticity after Ketamine Anesthesia.” <i>Science Advances</i>,
    vol. 12, no. 31, eadz6517, AAAS, 2026, doi:<a href="https://doi.org/10.1126/sciadv.adz6517">10.1126/sciadv.adz6517</a>.
  short: A. Venturino, A. Alam, T. Negrello, K. Jin, C.T.J. van Velthoven, R.J. Cubero,
    J. Yeung, P. Koppensteiner, B. Tasic, S. Siegert, Science Advances 12 (2026).
corr_author: '1'
das_tickbox: '1'
dataavailabilitystatement: 'All data and code needed to evaluate and reproduce the
  results in the paper are present in the paper and/or the Supplementary Materials.
  This study did not generate new materials. Transcriptional data can be accessed
  at the NCBI GEO accession GSE298669. The code for the morphological analysis is
  available under DOI: https://doi.org/10.5281/zenodo.19057068. The codes for the
  single-nucleus analysis are accessible under DOI: 10.5281/zenodo.19019013 and DOI:
  10.5281/zenodo.19071467.'
date_created: 2026-09-17T11:05:39Z
date_published: 2026-07-01T00:00:00Z
date_updated: 2026-09-22T06:56:26Z
day: '01'
ddc:
- '570'
department:
- _id: SaSi
- _id: ScienComp
- _id: PreCl
doi: 10.1126/sciadv.adz6517
external_id:
  pmid:
  - '42536755 '
file:
- access_level: open_access
  checksum: 715a1f35a0805be85ef90556205a2cbc
  content_type: application/pdf
  creator: dernst
  date_created: 2026-09-22T06:50:16Z
  date_updated: 2026-09-22T06:50:16Z
  file_id: '22980'
  file_name: 2026_ScienceAdv_Venturino.pdf
  file_size: 4556377
  relation: main_file
  success: 1
file_date_updated: 2026-09-22T06:50:16Z
fulldoi: https://doi.org/10.1126/sciadv.adz6517
has_accepted_license: '1'
intvolume: '        12'
issue: '31'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
publication: Science Advances
publication_identifier:
  eissn:
  - 2375-2548
publication_status: published
publisher: AAAS
quality_controlled: '1'
researchdata_availability: yes
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Corticosterone-linked microglial activity underpins sexually dimorphic neuroplasticity
  after ketamine anesthesia
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '22952'
abstract:
- lang: eng
  text: Mechanosensitive ion transport plays a central role in enabling living systems
    to perceive and adapt to their environment through the deformation of soft, embedded
    ion channels. In this work, we demonstrate that ion transport within a two-dimensional
    graphite nanoslit can be rationally engineered to achieve a bipolar, pressure-sensitive
    response without any structural deformation. The mechanosensitivity arises from
    the selective charging of one channel inlet, which acts as a reversible source
    of mobile charge carriers. These excess ions can then be advected in or out of
    the channel by the pressure-driven water flow, thereby modulating the ionic conductance.
    This mechanism is captured through a comprehensive electrohydrodynamic model that
    analytically accounts for coupled diffusion, convection, surface transport, diffusio-osmosis,
    and interfacial slippage, both inside and outside the nanoslit. The theoretical
    framework quantitatively reproduces the experimental data, showing that a simple
    surface charge pattern can give rise to complex, pressure-dependent conductance.
    These findings reveal how rich nonlinear couplings at the nanoscale can be harnessed
    to design adaptive, bioinspired nanofluidic systems, exemplified here by ionic
    pressure sensors.
acknowledgement: 'We acknowledge support from eRc project n-AQUA, grant agreement
  101071937. B.c. acknowledges support from the nOMiS Foundation. M.L. acknowledges
  support from theAlexander von humboldt foundation. Q.Y. acknowledges support from
  the Royal SocietyUniversity Research Fellowship URF\R1\221096 and UK Research and
  innovation Grant (eP/X017575/1). '
article_number: eaed4451
article_processing_charge: Yes
article_type: original
author:
- first_name: Mathieu
  full_name: Lizée, Mathieu
  last_name: Lizée
- first_name: Zhijia
  full_name: Zhang, Zhijia
  last_name: Zhang
- first_name: Baptiste
  full_name: Coquinot, Baptiste
  id: f8417bd4-f599-11ee-a482-b927e3ed1e8e
  last_name: Coquinot
  orcid: 0000-0001-5524-596X
- first_name: Qian
  full_name: Yang, Qian
  last_name: Yang
- first_name: Lydéric
  full_name: Bocquet, Lydéric
  last_name: Bocquet
citation:
  ama: Lizée M, Zhang Z, Coquinot B, Yang Q, Bocquet L. Architecting mechanosensitive
    nanofluidic transport in graphite nanoslits. <i>Science Advances</i>. 2026;12(31).
    doi:<a href="https://doi.org/10.1126/sciadv.aed4451">10.1126/sciadv.aed4451</a>
  apa: Lizée, M., Zhang, Z., Coquinot, B., Yang, Q., &#38; Bocquet, L. (2026). Architecting
    mechanosensitive nanofluidic transport in graphite nanoslits. <i>Science Advances</i>.
    AAAS. <a href="https://doi.org/10.1126/sciadv.aed4451">https://doi.org/10.1126/sciadv.aed4451</a>
  chicago: Lizée, Mathieu, Zhijia Zhang, Baptiste Coquinot, Qian Yang, and Lydéric
    Bocquet. “Architecting Mechanosensitive Nanofluidic Transport in Graphite Nanoslits.”
    <i>Science Advances</i>. AAAS, 2026. <a href="https://doi.org/10.1126/sciadv.aed4451">https://doi.org/10.1126/sciadv.aed4451</a>.
  ieee: M. Lizée, Z. Zhang, B. Coquinot, Q. Yang, and L. Bocquet, “Architecting mechanosensitive
    nanofluidic transport in graphite nanoslits,” <i>Science Advances</i>, vol. 12,
    no. 31. AAAS, 2026.
  ista: Lizée M, Zhang Z, Coquinot B, Yang Q, Bocquet L. 2026. Architecting mechanosensitive
    nanofluidic transport in graphite nanoslits. Science Advances. 12(31), eaed4451.
  mla: Lizée, Mathieu, et al. “Architecting Mechanosensitive Nanofluidic Transport
    in Graphite Nanoslits.” <i>Science Advances</i>, vol. 12, no. 31, eaed4451, AAAS,
    2026, doi:<a href="https://doi.org/10.1126/sciadv.aed4451">10.1126/sciadv.aed4451</a>.
  short: M. Lizée, Z. Zhang, B. Coquinot, Q. Yang, L. Bocquet, Science Advances 12
    (2026).
das_tickbox: '1'
dataavailabilitystatement: All data needed to evaluate the conclusions in the paper
  are present in the paper and/or the Supplementary Materials. no new materials have
  been created for this work
date_created: 2026-09-17T11:05:47Z
date_published: 2026-07-01T00:00:00Z
date_updated: 2026-09-24T12:00:31Z
day: '01'
ddc:
- '530'
department:
- _id: MiLe
doi: 10.1126/sciadv.aed4451
external_id:
  pmid:
  - '42525771'
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fulldoi: https://doi.org/10.1126/sciadv.aed4451
has_accepted_license: '1'
intvolume: '        12'
issue: '31'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
publication: Science Advances
publication_identifier:
  eissn:
  - 2375-2548
publication_status: published
publisher: AAAS
quality_controlled: '1'
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status: public
supplementarymaterial: yes
title: Architecting mechanosensitive nanofluidic transport in graphite nanoslits
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  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
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_id: '22954'
abstract:
- lang: eng
  text: The aim of the present paper is to propose and study a dissipative variant
    of symplectic billiards within planar strictly convex domains. The associated
    billiard map is dissipative, thus it admits a compact invariant set, the so-called
    Birkhoff attractor. Its complexity depends on the rate of dissipation as well
    as on the geometry of the billiard table. We prove that (a) for strong dissipation,
    the Birkhoff attractor is a normally contracted graph over the zero section; (b)
    for mild dissipation, the Birkhoff attractor within a centrally symmetric domain
    is an indecomposable continuum whose restricted dynamics has positive topological
    entropy. We compare these results with those for dissipative Birkhoff billiards,
    studied in [15].
acknowledgement: Open access funding provided by Università degli Studi di Padova
  within the CRUI-CARE Agreement. A.F. is partially supported by the ANR project CoSyDy
  (ANR-CE40-0014), the ANR project GALS (ANR-23-CE40-0001) and PEPS project “Jeuns
  chercheurs et jeunes chercheuses” 2025. L.B. and O.B. have been partially supported
  by the PRIN project 2022FPZEES “Stability in Hamiltonian Dynamics and Beyond”.
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Luca
  full_name: Baracco, Luca
  last_name: Baracco
- first_name: Olga
  full_name: Bernardi, Olga
  last_name: Bernardi
- first_name: Anna
  full_name: Florio, Anna
  last_name: Florio
- first_name: Alessandra
  full_name: Nardi, Alessandra
  id: 3e9c89df-ff0c-11f0-9fd7-c11e36d36769
  last_name: Nardi
citation:
  ama: Baracco L, Bernardi O, Florio A, Nardi A. Birkhoff attractors for dissipative
    symplectic billiards. <i>Journal of Dynamics and Differential Equations</i>. 2026.
    doi:<a href="https://doi.org/10.1007/s10884-026-10528-9">10.1007/s10884-026-10528-9</a>
  apa: Baracco, L., Bernardi, O., Florio, A., &#38; Nardi, A. (2026). Birkhoff attractors
    for dissipative symplectic billiards. <i>Journal of Dynamics and Differential
    Equations</i>. Springer. <a href="https://doi.org/10.1007/s10884-026-10528-9">https://doi.org/10.1007/s10884-026-10528-9</a>
  chicago: Baracco, Luca, Olga Bernardi, Anna Florio, and Alessandra Nardi. “Birkhoff
    Attractors for Dissipative Symplectic Billiards.” <i>Journal of Dynamics and Differential
    Equations</i>. Springer, 2026. <a href="https://doi.org/10.1007/s10884-026-10528-9">https://doi.org/10.1007/s10884-026-10528-9</a>.
  ieee: L. Baracco, O. Bernardi, A. Florio, and A. Nardi, “Birkhoff attractors for
    dissipative symplectic billiards,” <i>Journal of Dynamics and Differential Equations</i>.
    Springer, 2026.
  ista: Baracco L, Bernardi O, Florio A, Nardi A. 2026. Birkhoff attractors for dissipative
    symplectic billiards. Journal of Dynamics and Differential Equations.
  mla: Baracco, Luca, et al. “Birkhoff Attractors for Dissipative Symplectic Billiards.”
    <i>Journal of Dynamics and Differential Equations</i>, Springer, 2026, doi:<a
    href="https://doi.org/10.1007/s10884-026-10528-9">10.1007/s10884-026-10528-9</a>.
  short: L. Baracco, O. Bernardi, A. Florio, A. Nardi, Journal of Dynamics and Differential
    Equations (2026).
das_tickbox: '0'
date_created: 2026-09-17T11:05:59Z
date_published: 2026-07-27T00:00:00Z
date_updated: 2026-09-24T12:26:26Z
day: '27'
ddc:
- '500'
department:
- _id: VaKa
doi: 10.1007/s10884-026-10528-9
external_id:
  arxiv:
  - '2509.13086'
fulldoi: https://doi.org/10.1007/s10884-026-10528-9
has_accepted_license: '1'
keyword:
- Dissipative symplectic billiard
- Birkhoff attractor
- Conformally symplectic twist map
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1007/s10884-026-10528-9
month: '07'
oa: 1
oa_version: Published Version
publication: Journal of Dynamics and Differential Equations
publication_identifier:
  eissn:
  - 1572-9222
  issn:
  - 1040-7294
publication_status: epub_ahead
publisher: Springer
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: no
title: Birkhoff attractors for dissipative symplectic billiards
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2026'
...
---
OA_place: repository
OA_type: green
_id: '22953'
abstract:
- lang: eng
  text: We prove that any finitely smooth, axially symmetric, strictly convex domain
    with everywhere positive curvature and sufficiently close to an ellipse is area
    spectrally rigid. This means that any area-isospectral family of domains in this
    class is necessarily equi-affine. We use techniques, adapted to symplectic billiards,
    inspired by the paper of J. De Simoi, V. Kaloshin and Q. Wei [5].
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Luca
  full_name: Baracco, Luca
  last_name: Baracco
- first_name: Olga
  full_name: Bernardi, Olga
  last_name: Bernardi
- first_name: Alessandra
  full_name: Nardi, Alessandra
  id: 3e9c89df-ff0c-11f0-9fd7-c11e36d36769
  last_name: Nardi
citation:
  ama: Baracco L, Bernardi O, Nardi A. Area spectral rigidity for axially symmetric
    symplectic billiard tables. <i>Journal of Modern Dynamics</i>. 2026;22:469-488.
    doi:<a href="https://doi.org/10.3934/jmd.2026012">10.3934/jmd.2026012</a>
  apa: Baracco, L., Bernardi, O., &#38; Nardi, A. (2026). Area spectral rigidity for
    axially symmetric symplectic billiard tables. <i>Journal of Modern Dynamics</i>.
    American Institute of Mathematical Sciences. <a href="https://doi.org/10.3934/jmd.2026012">https://doi.org/10.3934/jmd.2026012</a>
  chicago: Baracco, Luca, Olga Bernardi, and Alessandra Nardi. “Area Spectral Rigidity
    for Axially Symmetric Symplectic Billiard Tables.” <i>Journal of Modern Dynamics</i>.
    American Institute of Mathematical Sciences, 2026. <a href="https://doi.org/10.3934/jmd.2026012">https://doi.org/10.3934/jmd.2026012</a>.
  ieee: L. Baracco, O. Bernardi, and A. Nardi, “Area spectral rigidity for axially
    symmetric symplectic billiard tables,” <i>Journal of Modern Dynamics</i>, vol.
    22. American Institute of Mathematical Sciences, pp. 469–488, 2026.
  ista: Baracco L, Bernardi O, Nardi A. 2026. Area spectral rigidity for axially symmetric
    symplectic billiard tables. Journal of Modern Dynamics. 22, 469–488.
  mla: Baracco, Luca, et al. “Area Spectral Rigidity for Axially Symmetric Symplectic
    Billiard Tables.” <i>Journal of Modern Dynamics</i>, vol. 22, American Institute
    of Mathematical Sciences, 2026, pp. 469–88, doi:<a href="https://doi.org/10.3934/jmd.2026012">10.3934/jmd.2026012</a>.
  short: L. Baracco, O. Bernardi, A. Nardi, Journal of Modern Dynamics 22 (2026) 469–488.
corr_author: '1'
das_tickbox: '0'
date_created: 2026-09-17T11:05:53Z
date_published: 2026-07-24T00:00:00Z
date_updated: 2026-09-24T12:12:44Z
day: '24'
department:
- _id: VaKa
doi: 10.3934/jmd.2026012
external_id:
  arxiv:
  - '2410.12644'
fulldoi: https://doi.org/10.3934/jmd.2026012
intvolume: '        22'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2410.12644
mathsc:
- 37D50
- 53C24
- 58J53
month: '07'
oa: 1
oa_version: Preprint
page: 469-488
publication: Journal of Modern Dynamics
publication_identifier:
  eissn:
  - 1930-532X
  issn:
  - 1930-5311
publication_status: published
publisher: American Institute of Mathematical Sciences
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: no
title: Area spectral rigidity for axially symmetric symplectic billiard tables
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 22
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
_id: '22956'
abstract:
- lang: eng
  text: Tissue regeneration requires de novo patterning, which has been proposed to
    be facilitated by cellular heterogeneity. Yet how such heterogeneities are integrated
    with the mechanochemical state of the tissue and stabilized at the chromatin level
    into stable, spatially organized fates remains poorly understood. Using in vivo
    mouse intestinal regeneration models and organoids, we identify a critical density
    regime that produces a permissive window for heterogeneity in the mechanosensor
    Yes-associated protein 1 (YAP1). We show that YAP1 heterogeneity is coupled to
    lineage-biased chromatin accessibility and is decoded through FOXA1, which integrates
    the permissive chromatin state to Delta-Notch supracellular feedback and lineage
    commitment. This circuit generates fate bistability and preserves a memory of
    transient YAP1 activity, thereby maintaining spatial patterning as tissues return
    to homeostasis after injury. Together, our findings establish a multiscale framework
    in which tissue-scale mechanics tune single-cell competence and, through FOXA1-mediated
    bistability, convert transient heterogeneity into stable and self-organized tissue
    architecture.
acknowledgement: We thank the Liberali group, M. Verbeek, and C. Soneson for fruitful
  discussions; E. Tagliavini for IT support; J. Lüthi for Fractal support; H. Köhler
  for FACS sorting; T.O. Buchholz for help on cell segmentation; B. Treutlein and
  A. Xavier da Silveira dos Santos for help with library preparation of single-cell
  ATAC-seq; M. Garioni for help with mouse salivary organoids; M. Kahnwald for help
  with human intestinal organoids; M. Lütolf, M. Nikolaev, and O. Mitrofanova for
  providing material and initial training for microwell experiments; J. Tchorz and
  V. Orsini for intestinal tissue sections of the YAP1 activator experiment in homeostasis;
  R. Kageyama for DLL1-Venus-T2A-mCherry mice; J.-F. Spetz for technical assistance;
  C. Lambert and N. Accart for help with sample preparation; Claudia Flandoli for
  graphic design of schemes; and Zuzana Nascakova for the graphical abstract. We thank
  the Foundation Hubrecht Organoid Technology (now Foundation Hubrecht Organoid Biobank,
  https://www.hubrechtorganoidbiobank.org/) for the duodenal organoid line used in
  this study (HUB-04-A2-001). We thank C.P. Heisenberg, M. Lütolf, C. Tsiairis, J.
  Zaugg, G. D’Angelo, L. Giorgetti, S. Arber, and the Liberali group for reading the
  manuscript. C.S. was supported by the European Molecular Biology Organization (Postdoctoral
  Fellowship ALTF 660-2020) and the Human Frontier Science Program (HFSP) LT000746/2021-L.
  D.B.B. was supported by the NOMIS Foundation as a NOMIS fellow, an EMBO Postdoctoral
  Fellowship (ALTF 343-2022), and the Austrian Academy of Sciences through an APART-MINT
  Fellowship. B.S. was supported by the Francis Crick Institute, which receives its
  core funding from Cancer Research UK, the UK Medical Research Council, and the Wellcome
  Trust (FC001159). This work received funding from ERC to E.H. (grant number 851288)
  and to P.L. (grant number 758617) and from SNSF (310030_208162 and SNSF ERC TMCG-3_223263).
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Cornelia
  full_name: Schwayer, Cornelia
  id: 3436488C-F248-11E8-B48F-1D18A9856A87
  last_name: Schwayer
  orcid: 0000-0001-5130-2226
- first_name: Silvia
  full_name: Barbiero, Silvia
  last_name: Barbiero
- first_name: David
  full_name: Brückner, David
  id: e1e86031-6537-11eb-953a-f7ab92be508d
  last_name: Brückner
  orcid: 0000-0001-7205-2975
- first_name: Koen C.
  full_name: Oost, Koen C.
  last_name: Oost
- first_name: Clara
  full_name: Baader, Clara
  last_name: Baader
- first_name: Nicole A.
  full_name: Repina, Nicole A.
  last_name: Repina
- first_name: Jinse
  full_name: Kim, Jinse
  last_name: Kim
- first_name: Oscar E.
  full_name: Diaz, Oscar E.
  last_name: Diaz
- first_name: Isa
  full_name: Uccelli, Isa
  last_name: Uccelli
- first_name: Laura
  full_name: Capolupo, Laura
  last_name: Capolupo
- first_name: Ludivine Challet
  full_name: Meylan, Ludivine Challet
  last_name: Meylan
- first_name: Veronique
  full_name: Kalck, Veronique
  last_name: Kalck
- first_name: Franziska
  full_name: Moos, Franziska
  last_name: Moos
- first_name: Simon
  full_name: Suppinger, Simon
  last_name: Suppinger
- first_name: Qiutan
  full_name: Yang, Qiutan
  last_name: Yang
- first_name: Jakob
  full_name: Schnabl, Jakob
  last_name: Schnabl
- first_name: Umut
  full_name: Kilik, Umut
  last_name: Kilik
- first_name: Matthieu
  full_name: Bourdon, Matthieu
  last_name: Bourdon
- first_name: J. Gray
  full_name: Camp, J. Gray
  last_name: Camp
- first_name: Brigitta
  full_name: Stockinger, Brigitta
  last_name: Stockinger
- first_name: Alessandra
  full_name: Ferrari, Alessandra
  last_name: Ferrari
- first_name: Marc
  full_name: Bühler, Marc
  last_name: Bühler
- first_name: Michael B.
  full_name: Stadler, Michael B.
  last_name: Stadler
- first_name: Edouard B
  full_name: Hannezo, Edouard B
  id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
  last_name: Hannezo
  orcid: 0000-0001-6005-1561
- first_name: Prisca
  full_name: Liberali, Prisca
  last_name: Liberali
citation:
  ama: Schwayer C, Barbiero S, Brückner D, et al. Multiscale integration of tissue
    and chromatin context converts cell heterogeneity into stable intestinal patterning.
    <i>Cell</i>. 2026;189(17):5266-5282.e17. doi:<a href="https://doi.org/10.1016/j.cell.2026.06.009">10.1016/j.cell.2026.06.009</a>
  apa: Schwayer, C., Barbiero, S., Brückner, D., Oost, K. C., Baader, C., Repina,
    N. A., … Liberali, P. (2026). Multiscale integration of tissue and chromatin context
    converts cell heterogeneity into stable intestinal patterning. <i>Cell</i>. Cell
    Press. <a href="https://doi.org/10.1016/j.cell.2026.06.009">https://doi.org/10.1016/j.cell.2026.06.009</a>
  chicago: Schwayer, Cornelia, Silvia Barbiero, David Brückner, Koen C. Oost, Clara
    Baader, Nicole A. Repina, Jinse Kim, et al. “Multiscale Integration of Tissue
    and Chromatin Context Converts Cell Heterogeneity into Stable Intestinal Patterning.”
    <i>Cell</i>. Cell Press, 2026. <a href="https://doi.org/10.1016/j.cell.2026.06.009">https://doi.org/10.1016/j.cell.2026.06.009</a>.
  ieee: C. Schwayer <i>et al.</i>, “Multiscale integration of tissue and chromatin
    context converts cell heterogeneity into stable intestinal patterning,” <i>Cell</i>,
    vol. 189, no. 17. Cell Press, p. 5266–5282.e17, 2026.
  ista: Schwayer C, Barbiero S, Brückner D, Oost KC, Baader C, Repina NA, Kim J, Diaz
    OE, Uccelli I, Capolupo L, Meylan LC, Kalck V, Moos F, Suppinger S, Yang Q, Schnabl
    J, Kilik U, Bourdon M, Camp JG, Stockinger B, Ferrari A, Bühler M, Stadler MB,
    Hannezo EB, Liberali P. 2026. Multiscale integration of tissue and chromatin context
    converts cell heterogeneity into stable intestinal patterning. Cell. 189(17),
    5266–5282.e17.
  mla: Schwayer, Cornelia, et al. “Multiscale Integration of Tissue and Chromatin
    Context Converts Cell Heterogeneity into Stable Intestinal Patterning.” <i>Cell</i>,
    vol. 189, no. 17, Cell Press, 2026, p. 5266–5282.e17, doi:<a href="https://doi.org/10.1016/j.cell.2026.06.009">10.1016/j.cell.2026.06.009</a>.
  short: C. Schwayer, S. Barbiero, D. Brückner, K.C. Oost, C. Baader, N.A. Repina,
    J. Kim, O.E. Diaz, I. Uccelli, L. Capolupo, L.C. Meylan, V. Kalck, F. Moos, S.
    Suppinger, Q. Yang, J. Schnabl, U. Kilik, M. Bourdon, J.G. Camp, B. Stockinger,
    A. Ferrari, M. Bühler, M.B. Stadler, E.B. Hannezo, P. Liberali, Cell 189 (2026)
    5266–5282.e17.
corr_author: '1'
das_tickbox: '1'
dataavailabilitystatement: "All sequencing data have been deposited at the Gene Expression
  Omnibus (GEO) under accession number GEO: GSE283662.\r\nAnalysis of imaging and
  sequencing data was developed in the Liberali lab and is available at https://github.com/LiberaliLab/symmetry-breaking-2026.
  Detailed information on the packages used is provided in the STAR Methods section.\r\nAny
  additional information required to reanalyze the data reported in this paper is
  available from the lead contact upon request."
date_created: 2026-09-17T11:06:12Z
date_published: 2026-08-20T00:00:00Z
date_updated: 2026-10-01T08:42:00Z
day: '20'
ddc:
- '570'
doi: 10.1016/j.cell.2026.06.009
ec_funded: 1
external_id:
  pmid:
  - '42379166'
file:
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  checksum: 3ff0f4f8be0e79940ba11b18af318ae3
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  creator: dernst
  date_created: 2026-10-01T08:34:11Z
  date_updated: 2026-10-01T08:34:11Z
  file_id: '23014'
  file_name: 2026_Cell_Schwayer.pdf
  file_size: 15536364
  relation: main_file
  success: 1
file_date_updated: 2026-10-01T08:34:11Z
fulldoi: https://doi.org/10.1016/j.cell.2026.06.009
has_accepted_license: '1'
intvolume: '       189'
issue: '17'
keyword:
- tissue patterning
- heterogeneity
- mechanics
- intestinal regeneration
- epigenetic competence
- multiscale integration
- modeling
- organoids
- image-based phenotyping
- Yap1
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: 5266-5282.e17
pmid: 1
project:
- _id: 34e2a5b5-11ca-11ed-8bc3-b2265616ef0b
  grant_number: ALTF 343-2022
  name: A mechano-chemical theory for stem cell fate decisions in organoid development
- _id: 05943252-7A3F-11EA-A408-12923DDC885E
  call_identifier: H2020
  grant_number: '851288'
  name: Design Principles of Branching Morphogenesis
publication: Cell
publication_identifier:
  eissn:
  - 1097-4172
  issn:
  - 0092-8674
publication_status: published
publisher: Cell Press
quality_controlled: '1'
researchdata_availability: yes
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Multiscale integration of tissue and chromatin context converts cell heterogeneity
  into stable intestinal patterning
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 189
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '22957'
abstract:
- lang: eng
  text: Linguistic inequality remains a silent barrier in contemporary science, particularly
    in rapidly evolving and interdisciplinary fields such as bioinformatics. This
    article examines how the Spanish-speaking community has responded to this gap
    through the creation of the Simposio de Estudiantes Hispanohablantes de Bioinformática
    y Biología Computacional (SEH2Bioinfo), a collective initiative that transforms
    language into a tool for inclusion and collaboration. Drawing on a historical
    review of the use of Spanish in scientific communication and an analysis of the
    two editions of SEH2Bioinfo (2022 and 2025), complemented by surveys of more than
    1500 participants, we explore the effects of language on confidence, participation,
    and academic visibility. The findings show that Spanish can serve as a space for
    training and mentorship without compromising rigor, while simultaneously strengthening
    international networks and promoting open science. The growth of SEH2Bioinfo,
    its collaborative approach, and its intercontinental reach establish the symposium
    as a model for linguistic equity in scientific practice. Its experience demonstrates
    that expanding linguistic diversity in bioinformatics is not only possible but
    essential to building a global scientific community that is fairer, more connected,
    and representative.
acknowledgement: "We acknowledge the sponsors who made the SEH2Bioinfo possible, the
  organizers from the various Spanish-speaking RSGs, and\r\nthe collaborators who
  contributed to dissemination, logistics,\r\nand other essential tasks for its execution.
  G.J.O.-O. thanks the\r\nFONDECYT Postdoctoral Project No. 3250793 for financial
  support. G.J.O.-O. also expresses gratitude to Valentina Luza: “May\r\nher passion
  for science communication keep inspiring new generations, myself included, to infinity
  and beyond!” R.G.P.\r\nthanks the Argentinian public university education system
  as an\r\nelement of social ascendance and democratization of professional opportunities."
article_number: vbag182
article_processing_charge: Yes
article_type: original
author:
- first_name: Carla L
  full_name: Padilla Franzotti, Carla L
  last_name: Padilla Franzotti
- first_name: Gabriel J
  full_name: Olguín-Orellana, Gabriel J
  last_name: Olguín-Orellana
- first_name: Nicolas
  full_name: Palopoli, Nicolas
  last_name: Palopoli
- first_name: Sebastián
  full_name: Urquiza-Zurich, Sebastián
  last_name: Urquiza-Zurich
- first_name: Adrian
  full_name: Garcia-Moreno, Adrian
  last_name: Garcia-Moreno
- first_name: Sara
  full_name: Monzón, Sara
  last_name: Monzón
- first_name: Mónica
  full_name: Cabrera-Pasadas, Mónica
  last_name: Cabrera-Pasadas
- first_name: Irene
  full_name: Soler Sáez, Irene
  last_name: Soler Sáez
- first_name: Carla
  full_name: Perpiñá-Clérigues, Carla
  last_name: Perpiñá-Clérigues
- first_name: Rafael J
  full_name: Puche Quiñonez, Rafael J
  last_name: Puche Quiñonez
- first_name: Jennifer
  full_name: Vélez Segura, Jennifer
  last_name: Vélez Segura
- first_name: Jose Abel
  full_name: Lovaco-Flores, Jose Abel
  last_name: Lovaco-Flores
- first_name: Cleidy M
  full_name: Osorio Mogollón, Cleidy M
  last_name: Osorio Mogollón
- first_name: Eva M
  full_name: Esquinas-Román, Eva M
  last_name: Esquinas-Román
- first_name: Maria C
  full_name: Miserendino, Maria C
  id: 273e0cbd-72f0-11ef-b75a-f9f932e292fa
  last_name: Miserendino
- first_name: Pradeep
  full_name: Eranti, Pradeep
  last_name: Eranti
- first_name: Ana
  full_name: Castillo-Orozco, Ana
  last_name: Castillo-Orozco
- first_name: Yesid
  full_name: Cuesta-Astroz, Yesid
  last_name: Cuesta-Astroz
- first_name: R Gonzalo
  full_name: Parra, R Gonzalo
  last_name: Parra
citation:
  ama: 'Padilla Franzotti CL, Olguín-Orellana GJ, Palopoli N, et al. Bioinformatics
    in Español: Expanding open, diverse, and collaborative science through SEH2Bioinfo.
    <i>Bioinformatics Advances</i>. 2026;6(1). doi:<a href="https://doi.org/10.1093/bioadv/vbag182">10.1093/bioadv/vbag182</a>'
  apa: 'Padilla Franzotti, C. L., Olguín-Orellana, G. J., Palopoli, N., Urquiza-Zurich,
    S., Garcia-Moreno, A., Monzón, S., … Parra, R. G. (2026). Bioinformatics in Español:
    Expanding open, diverse, and collaborative science through SEH2Bioinfo. <i>Bioinformatics
    Advances</i>. Oxford University Press. <a href="https://doi.org/10.1093/bioadv/vbag182">https://doi.org/10.1093/bioadv/vbag182</a>'
  chicago: 'Padilla Franzotti, Carla L, Gabriel J Olguín-Orellana, Nicolas Palopoli,
    Sebastián Urquiza-Zurich, Adrian Garcia-Moreno, Sara Monzón, Mónica Cabrera-Pasadas,
    et al. “Bioinformatics in Español: Expanding Open, Diverse, and Collaborative
    Science through SEH2Bioinfo.” <i>Bioinformatics Advances</i>. Oxford University
    Press, 2026. <a href="https://doi.org/10.1093/bioadv/vbag182">https://doi.org/10.1093/bioadv/vbag182</a>.'
  ieee: 'C. L. Padilla Franzotti <i>et al.</i>, “Bioinformatics in Español: Expanding
    open, diverse, and collaborative science through SEH2Bioinfo,” <i>Bioinformatics
    Advances</i>, vol. 6, no. 1. Oxford University Press, 2026.'
  ista: 'Padilla Franzotti CL, Olguín-Orellana GJ, Palopoli N, Urquiza-Zurich S, Garcia-Moreno
    A, Monzón S, Cabrera-Pasadas M, Soler Sáez I, Perpiñá-Clérigues C, Puche Quiñonez
    RJ, Vélez Segura J, Lovaco-Flores JA, Osorio Mogollón CM, Esquinas-Román EM, Miserendino
    MC, Eranti P, Castillo-Orozco A, Cuesta-Astroz Y, Parra RG. 2026. Bioinformatics
    in Español: Expanding open, diverse, and collaborative science through SEH2Bioinfo.
    Bioinformatics Advances. 6(1), vbag182.'
  mla: 'Padilla Franzotti, Carla L., et al. “Bioinformatics in Español: Expanding
    Open, Diverse, and Collaborative Science through SEH2Bioinfo.” <i>Bioinformatics
    Advances</i>, vol. 6, no. 1, vbag182, Oxford University Press, 2026, doi:<a href="https://doi.org/10.1093/bioadv/vbag182">10.1093/bioadv/vbag182</a>.'
  short: C.L. Padilla Franzotti, G.J. Olguín-Orellana, N. Palopoli, S. Urquiza-Zurich,
    A. Garcia-Moreno, S. Monzón, M. Cabrera-Pasadas, I. Soler Sáez, C. Perpiñá-Clérigues,
    R.J. Puche Quiñonez, J. Vélez Segura, J.A. Lovaco-Flores, C.M. Osorio Mogollón,
    E.M. Esquinas-Román, M.C. Miserendino, P. Eranti, A. Castillo-Orozco, Y. Cuesta-Astroz,
    R.G. Parra, Bioinformatics Advances 6 (2026).
das_tickbox: '1'
dataavailabilitystatement: "The data underlying this article, including the abstract
  books for\r\nthe first and second editions of the SEH2Bioinfo symposia, are\r\navailable
  in Zenodo at https://doi.org/10.5281/zenodo.6603621\r\nand https://doi.org/10.5281/zenodo.1,54,46,570,
  respectively."
date_created: 2026-09-17T11:06:17Z
date_published: 2026-08-06T00:00:00Z
date_updated: 2026-10-01T08:59:32Z
day: '06'
ddc:
- '570'
department:
- _id: PaSc
- _id: GradSch
doi: 10.1093/bioadv/vbag182
external_id:
  pmid:
  - '42577783'
file:
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  relation: main_file
  success: 1
file_date_updated: 2026-10-01T08:55:00Z
fulldoi: https://doi.org/10.1093/bioadv/vbag182
has_accepted_license: '1'
intvolume: '         6'
issue: '1'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
pmid: 1
publication: Bioinformatics Advances
publication_identifier:
  eissn:
  - 2635-0041
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1093/bioadv/vbag271
researchdata_availability: yes
scopus_import: '1'
status: public
supplementarymaterial: no
title: 'Bioinformatics in Español: Expanding open, diverse, and collaborative science
  through SEH2Bioinfo'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '22958'
abstract:
- lang: eng
  text: "We propose a sensing scheme for detecting weak forces that achieves sensitivity
    scaling proportional to the number of individual sensors without relying on entanglement
    or other non-classical resources. Our scheme utilizes coherent averaging across
    a chain of \r\n optomechanical cavities, unidirectionally coupled via a laser
    beam. As the beam passes through the cavities, it accumulates phase shifts induced
    by a common external force acting on the mechanical elements. Remarkably, this
    fully classical approach achieves the sensitivity scaling typically associated
    with quantum-enhanced protocols, providing a robust and experimentally feasible
    route to precision sensing. Potential applications range from high-sensitivity
    gravitational field measurements at the Large Hadron Collider to probing dark
    matter interactions and detecting gravitational waves. This work opens a new pathway
    for leveraging coherent light-matter interactions for force sensing."
acknowledgement: 'We thank Germain Tobar, Navdeep Arya, Magdalena Zych, Teodor Strömberg
  and Onur Hosten for useful discussions. M M M acknowledges support from the Walter
  Benjamin Programme (Project Number 510053905) and from the Austrian Science Fund
  (FWF) [10.55776/COE1]. DB acknowledges funding by the EU EIC Pathfinder project
  QuCoM (101046973). D R acknowledges funding by the Federal Ministry of Education
  and Research of Germany in the project ‘Open6GHub’ (Grant Number: 16KISK016), financial
  support from EPSRC (Engineering & Physical Sciences Research Council, United Kingdom)
  Grant Number EP/X009467/1, and support by the Deutsche Forschungsgemeinschaft (DFG,
  German Research Foundation) under Germany’s Excellence Strategy—EXC-2123 QuantumFrontiers
  - 390837967.'
article_number: '084505'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Marta M
  full_name: Marchese, Marta M
  id: fdac3bd4-d1c1-11ef-aaa4-fad05dc21577
  last_name: Marchese
- first_name: Daniel
  full_name: Braun, Daniel
  last_name: Braun
- first_name: Stefan
  full_name: Nimmrichter, Stefan
  last_name: Nimmrichter
- first_name: Dennis
  full_name: Rätzel, Dennis
  last_name: Rätzel
citation:
  ama: Marchese MM, Braun D, Nimmrichter S, Rätzel D. Cascaded optomechanical sensing
    for small signals. <i>New Journal of Physics</i>. 2026;28(8). doi:<a href="https://doi.org/10.1088/1367-2630/ae8b16">10.1088/1367-2630/ae8b16</a>
  apa: Marchese, M. M., Braun, D., Nimmrichter, S., &#38; Rätzel, D. (2026). Cascaded
    optomechanical sensing for small signals. <i>New Journal of Physics</i>. IOP Publishing.
    <a href="https://doi.org/10.1088/1367-2630/ae8b16">https://doi.org/10.1088/1367-2630/ae8b16</a>
  chicago: Marchese, Marta M, Daniel Braun, Stefan Nimmrichter, and Dennis Rätzel.
    “Cascaded Optomechanical Sensing for Small Signals.” <i>New Journal of Physics</i>.
    IOP Publishing, 2026. <a href="https://doi.org/10.1088/1367-2630/ae8b16">https://doi.org/10.1088/1367-2630/ae8b16</a>.
  ieee: M. M. Marchese, D. Braun, S. Nimmrichter, and D. Rätzel, “Cascaded optomechanical
    sensing for small signals,” <i>New Journal of Physics</i>, vol. 28, no. 8. IOP
    Publishing, 2026.
  ista: Marchese MM, Braun D, Nimmrichter S, Rätzel D. 2026. Cascaded optomechanical
    sensing for small signals. New Journal of Physics. 28(8), 084505.
  mla: Marchese, Marta M., et al. “Cascaded Optomechanical Sensing for Small Signals.”
    <i>New Journal of Physics</i>, vol. 28, no. 8, 084505, IOP Publishing, 2026, doi:<a
    href="https://doi.org/10.1088/1367-2630/ae8b16">10.1088/1367-2630/ae8b16</a>.
  short: M.M. Marchese, D. Braun, S. Nimmrichter, D. Rätzel, New Journal of Physics
    28 (2026).
corr_author: '1'
das_tickbox: '1'
dataavailabilitystatement: All data that support the findings of this study are included
  within the article (and any supplementary files).
date_created: 2026-09-17T11:06:23Z
date_published: 2026-08-13T00:00:00Z
date_updated: 2026-10-01T09:19:39Z
day: '13'
ddc:
- '530'
department:
- _id: OnHo
doi: 10.1088/1367-2630/ae8b16
external_id:
  arxiv:
  - '2602.08981'
file:
- access_level: open_access
  checksum: b932d9f4bac1a2f6777e41d884b7b703
  content_type: application/pdf
  creator: dernst
  date_created: 2026-10-01T09:17:19Z
  date_updated: 2026-10-01T09:17:19Z
  file_id: '23018'
  file_name: 2026_NewJourPhysics_Marchese.pdf
  file_size: 799610
  relation: main_file
  success: 1
file_date_updated: 2026-10-01T09:17:19Z
fulldoi: https://doi.org/10.1088/1367-2630/ae8b16
has_accepted_license: '1'
intvolume: '        28'
issue: '8'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: 3b79db15-b029-11f1-a721-dbd41d892ec2
  grant_number: COE01
  name: Quantum Science Austria (Hosten)
publication: New Journal of Physics
publication_identifier:
  eissn:
  - 1367-2630
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Cascaded optomechanical sensing for small signals
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 28
year: '2026'
...
