---
_id: '7650'
abstract:
- lang: eng
  text: We consider a dilute, homogeneous Bose gas at positive temperature. The system
    is investigated in the Gross–Pitaevskii limit, where the scattering length a is
    so small that the interaction energy is of the same order of magnitude as the
    spectral gap of the Laplacian, and for temperatures that are comparable to the
    critical temperature of the ideal gas. We show that the difference between the
    specific free energy of the interacting system and the one of the ideal gas is
    to leading order given by 4πa(2ϱ2−ϱ20). Here ϱ denotes the density of the system
    and ϱ0 is the expected condensate density of the ideal gas. Additionally, we show
    that the one-particle density matrix of any approximate minimizer of the Gibbs
    free energy functional is to leading order given by the one of the ideal gas.
    This in particular proves Bose–Einstein condensation with critical temperature
    given by the one of the ideal gas to leading order. One key ingredient of our
    proof is a novel use of the Gibbs variational principle that goes hand in hand
    with the c-number substitution.
acknowledgement: Open access funding provided by Institute of Science and Technology
  (IST Austria). It is a pleasure to thank Jakob Yngvason for helpful discussions.
  Financial support by the European Research Council (ERC) under the European Union’sHorizon
  2020 research and innovation programme (Grant Agreement No. 694227) is gratefully
  acknowledged. A. D. acknowledges funding from the European Union’s Horizon 2020
  research and innovation programme under the Marie Sklodowska-Curie Grant Agreement
  No. 836146.
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Andreas
  full_name: Deuchert, Andreas
  id: 4DA65CD0-F248-11E8-B48F-1D18A9856A87
  last_name: Deuchert
  orcid: 0000-0003-3146-6746
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
citation:
  ama: Deuchert A, Seiringer R. Gross-Pitaevskii limit of a homogeneous Bose gas at
    positive temperature. <i>Archive for Rational Mechanics and Analysis</i>. 2020;236(6):1217-1271.
    doi:<a href="https://doi.org/10.1007/s00205-020-01489-4">10.1007/s00205-020-01489-4</a>
  apa: Deuchert, A., &#38; Seiringer, R. (2020). Gross-Pitaevskii limit of a homogeneous
    Bose gas at positive temperature. <i>Archive for Rational Mechanics and Analysis</i>.
    Springer Nature. <a href="https://doi.org/10.1007/s00205-020-01489-4">https://doi.org/10.1007/s00205-020-01489-4</a>
  chicago: Deuchert, Andreas, and Robert Seiringer. “Gross-Pitaevskii Limit of a Homogeneous
    Bose Gas at Positive Temperature.” <i>Archive for Rational Mechanics and Analysis</i>.
    Springer Nature, 2020. <a href="https://doi.org/10.1007/s00205-020-01489-4">https://doi.org/10.1007/s00205-020-01489-4</a>.
  ieee: A. Deuchert and R. Seiringer, “Gross-Pitaevskii limit of a homogeneous Bose
    gas at positive temperature,” <i>Archive for Rational Mechanics and Analysis</i>,
    vol. 236, no. 6. Springer Nature, pp. 1217–1271, 2020.
  ista: Deuchert A, Seiringer R. 2020. Gross-Pitaevskii limit of a homogeneous Bose
    gas at positive temperature. Archive for Rational Mechanics and Analysis. 236(6),
    1217–1271.
  mla: Deuchert, Andreas, and Robert Seiringer. “Gross-Pitaevskii Limit of a Homogeneous
    Bose Gas at Positive Temperature.” <i>Archive for Rational Mechanics and Analysis</i>,
    vol. 236, no. 6, Springer Nature, 2020, pp. 1217–71, doi:<a href="https://doi.org/10.1007/s00205-020-01489-4">10.1007/s00205-020-01489-4</a>.
  short: A. Deuchert, R. Seiringer, Archive for Rational Mechanics and Analysis 236
    (2020) 1217–1271.
corr_author: '1'
date_created: 2020-04-08T15:18:03Z
date_published: 2020-03-09T00:00:00Z
date_updated: 2025-04-14T07:27:00Z
day: '09'
ddc:
- '510'
department:
- _id: RoSe
doi: 10.1007/s00205-020-01489-4
ec_funded: 1
external_id:
  arxiv:
  - '1901.11363'
  isi:
  - '000519415000001'
file:
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  checksum: b645fb64bfe95bbc05b3eea374109a9c
  content_type: application/pdf
  creator: dernst
  date_created: 2020-11-20T13:17:42Z
  date_updated: 2020-11-20T13:17:42Z
  file_id: '8785'
  file_name: 2020_ArchRatMechanicsAnalysis_Deuchert.pdf
  file_size: 704633
  relation: main_file
  success: 1
file_date_updated: 2020-11-20T13:17:42Z
has_accepted_license: '1'
intvolume: '       236'
isi: 1
issue: '6'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 1217-1271
project:
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694227'
  name: Analysis of quantum many-body systems
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: Archive for Rational Mechanics and Analysis
publication_identifier:
  eissn:
  - 1432-0673
  issn:
  - 0003-9527
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Gross-Pitaevskii limit of a homogeneous Bose gas at positive temperature
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 236
year: '2020'
...
---
_id: '7656'
abstract:
- lang: eng
  text: 'We propose that correlations among neurons are generically strong enough
    to organize neural activity patterns into a discrete set of clusters, which can
    each be viewed as a population codeword. Our reasoning starts with the analysis
    of retinal ganglion cell data using maximum entropy models, showing that the population
    is robustly in a frustrated, marginally sub-critical, or glassy, state. This leads
    to an argument that neural populations in many other brain areas might share this
    structure. Next, we use latent variable models to show that this glassy state
    possesses well-defined clusters of neural activity. Clusters have three appealing
    properties: (i) clusters exhibit error correction, i.e., they are reproducibly
    elicited by the same stimulus despite variability at the level of constituent
    neurons; (ii) clusters encode qualitatively different visual features than their
    constituent neurons; and (iii) clusters can be learned by downstream neural circuits
    in an unsupervised fashion. We hypothesize that these properties give rise to
    a “learnable” neural code which the cortical hierarchy uses to extract increasingly
    complex features without supervision or reinforcement.'
article_number: '20'
article_processing_charge: No
article_type: original
author:
- first_name: Michael J.
  full_name: Berry, Michael J.
  last_name: Berry
- first_name: Gašper
  full_name: Tkačik, Gašper
  id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
  last_name: Tkačik
  orcid: 0000-0002-6699-1455
citation:
  ama: 'Berry MJ, Tkačik G. Clustering of neural activity: A design principle for
    population codes. <i>Frontiers in Computational Neuroscience</i>. 2020;14. doi:<a
    href="https://doi.org/10.3389/fncom.2020.00020">10.3389/fncom.2020.00020</a>'
  apa: 'Berry, M. J., &#38; Tkačik, G. (2020). Clustering of neural activity: A design
    principle for population codes. <i>Frontiers in Computational Neuroscience</i>.
    Frontiers. <a href="https://doi.org/10.3389/fncom.2020.00020">https://doi.org/10.3389/fncom.2020.00020</a>'
  chicago: 'Berry, Michael J., and Gašper Tkačik. “Clustering of Neural Activity:
    A Design Principle for Population Codes.” <i>Frontiers in Computational Neuroscience</i>.
    Frontiers, 2020. <a href="https://doi.org/10.3389/fncom.2020.00020">https://doi.org/10.3389/fncom.2020.00020</a>.'
  ieee: 'M. J. Berry and G. Tkačik, “Clustering of neural activity: A design principle
    for population codes,” <i>Frontiers in Computational Neuroscience</i>, vol. 14.
    Frontiers, 2020.'
  ista: 'Berry MJ, Tkačik G. 2020. Clustering of neural activity: A design principle
    for population codes. Frontiers in Computational Neuroscience. 14, 20.'
  mla: 'Berry, Michael J., and Gašper Tkačik. “Clustering of Neural Activity: A Design
    Principle for Population Codes.” <i>Frontiers in Computational Neuroscience</i>,
    vol. 14, 20, Frontiers, 2020, doi:<a href="https://doi.org/10.3389/fncom.2020.00020">10.3389/fncom.2020.00020</a>.'
  short: M.J. Berry, G. Tkačik, Frontiers in Computational Neuroscience 14 (2020).
date_created: 2020-04-12T22:00:40Z
date_published: 2020-03-13T00:00:00Z
date_updated: 2026-04-16T08:28:50Z
day: '13'
ddc:
- '570'
department:
- _id: GaTk
doi: 10.3389/fncom.2020.00020
external_id:
  isi:
  - '000525543200001'
  pmid:
  - '32231528'
file:
- access_level: open_access
  checksum: 2b1da23823eae9cedbb42d701945b61e
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-14T12:20:39Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7659'
  file_name: 2020_Frontiers_Berry.pdf
  file_size: 4082937
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '        14'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: Frontiers in Computational Neuroscience
publication_identifier:
  eissn:
  - 1662-5188
publication_status: published
publisher: Frontiers
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Clustering of neural activity: A design principle for population codes'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 14
year: '2020'
...
---
_id: '7663'
abstract:
- lang: eng
  text: Wood, as the most abundant carbon dioxide storing bioresource, is currently
    driven beyond its traditional use through creative innovations and nanotechnology.
    For many properties the micro- and nanostructure plays a crucial role and one
    key challenge is control and detection of chemical and physical processes in the
    confined microstructure and nanopores of the wooden cell wall. In this study,
    correlative Raman and atomic force microscopy show high potential for tracking
    in situ molecular rearrangement of wood polymers during compression. More water
    molecules (interpreted as wider cellulose microfibril distances) and disentangling
    of hemicellulose chains are detected in the opened cell wall regions, whereas
    an increase of lignin is revealed in the compressed areas. These results support
    a new more “loose” cell wall model based on flexible lignin nanodomains and advance
    our knowledge of the molecular reorganization during deformation of wood for optimized
    processing and utilization.
article_processing_charge: No
article_type: original
author:
- first_name: Martin
  full_name: Felhofer, Martin
  last_name: Felhofer
- first_name: Peter
  full_name: Bock, Peter
  last_name: Bock
- first_name: Adya
  full_name: Singh, Adya
  last_name: Singh
- first_name: Batirtze
  full_name: Prats Mateu, Batirtze
  id: 299FE892-F248-11E8-B48F-1D18A9856A87
  last_name: Prats Mateu
- first_name: Ronald
  full_name: Zirbs, Ronald
  last_name: Zirbs
- first_name: Notburga
  full_name: Gierlinger, Notburga
  last_name: Gierlinger
citation:
  ama: Felhofer M, Bock P, Singh A, Prats Mateu B, Zirbs R, Gierlinger N. Wood deformation
    leads to rearrangement of molecules at the nanoscale. <i>Nano Letters</i>. 2020;20(4):2647-2653.
    doi:<a href="https://doi.org/10.1021/acs.nanolett.0c00205">10.1021/acs.nanolett.0c00205</a>
  apa: Felhofer, M., Bock, P., Singh, A., Prats Mateu, B., Zirbs, R., &#38; Gierlinger,
    N. (2020). Wood deformation leads to rearrangement of molecules at the nanoscale.
    <i>Nano Letters</i>. American Chemical Society. <a href="https://doi.org/10.1021/acs.nanolett.0c00205">https://doi.org/10.1021/acs.nanolett.0c00205</a>
  chicago: Felhofer, Martin, Peter Bock, Adya Singh, Batirtze Prats Mateu, Ronald
    Zirbs, and Notburga Gierlinger. “Wood Deformation Leads to Rearrangement of Molecules
    at the Nanoscale.” <i>Nano Letters</i>. American Chemical Society, 2020. <a href="https://doi.org/10.1021/acs.nanolett.0c00205">https://doi.org/10.1021/acs.nanolett.0c00205</a>.
  ieee: M. Felhofer, P. Bock, A. Singh, B. Prats Mateu, R. Zirbs, and N. Gierlinger,
    “Wood deformation leads to rearrangement of molecules at the nanoscale,” <i>Nano
    Letters</i>, vol. 20, no. 4. American Chemical Society, pp. 2647–2653, 2020.
  ista: Felhofer M, Bock P, Singh A, Prats Mateu B, Zirbs R, Gierlinger N. 2020. Wood
    deformation leads to rearrangement of molecules at the nanoscale. Nano Letters.
    20(4), 2647–2653.
  mla: Felhofer, Martin, et al. “Wood Deformation Leads to Rearrangement of Molecules
    at the Nanoscale.” <i>Nano Letters</i>, vol. 20, no. 4, American Chemical Society,
    2020, pp. 2647–53, doi:<a href="https://doi.org/10.1021/acs.nanolett.0c00205">10.1021/acs.nanolett.0c00205</a>.
  short: M. Felhofer, P. Bock, A. Singh, B. Prats Mateu, R. Zirbs, N. Gierlinger,
    Nano Letters 20 (2020) 2647–2653.
date_created: 2020-04-19T22:00:54Z
date_published: 2020-04-08T00:00:00Z
date_updated: 2026-04-02T14:26:44Z
day: '08'
ddc:
- '530'
department:
- _id: MaLo
doi: 10.1021/acs.nanolett.0c00205
external_id:
  isi:
  - '000526413400055'
  pmid:
  - '32196350'
file:
- access_level: open_access
  checksum: fe46146a9c4c620592a1932a8599069e
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-20T10:43:36Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7667'
  file_name: 2020_NanoLetters_Felhofer.pdf
  file_size: 7108014
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '        20'
isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 2647-2653
pmid: 1
publication: Nano Letters
publication_identifier:
  eissn:
  - 1530-6992
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Wood deformation leads to rearrangement of molecules at the nanoscale
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 20
year: '2020'
...
---
_id: '7664'
abstract:
- lang: eng
  text: Metabotropic γ-aminobutyric acid (GABAB) receptors contribute to the control
    of network activity and information processing in hippocampal circuits by regulating
    neuronal excitability and synaptic transmission. The dysfunction in the dentate
    gyrus (DG) has been implicated in Alzheimer´s disease (AD). Given the involvement
    of GABAB receptors in AD, to determine their subcellular localisation and possible
    alteration in granule cells of the DG in a mouse model of AD at 12 months of age,
    we used high-resolution immunoelectron microscopic analysis. Immunohistochemistry
    at the light microscopic level showed that the regional and cellular expression
    pattern of GABAB1 was similar in an AD model mouse expressing mutated human amyloid
    precursor protein and presenilin1 (APP/PS1) and in age-matched wild type mice.
    High-resolution immunoelectron microscopy revealed a distance-dependent gradient
    of immunolabelling for GABAB receptors, increasing from proximal to distal dendrites
    in both wild type and APP/PS1 mice. However, the overall density of GABAB receptors
    at the neuronal surface of these postsynaptic compartments of granule cells was
    significantly reduced in APP/PS1 mice. Parallel to this reduction in surface receptors,
    we found a significant increase in GABAB1 at cytoplasmic sites. GABAB receptors
    were also detected at presynaptic sites in the molecular layer of the DG. We also
    found a decrease in plasma membrane GABAB receptors in axon terminals contacting
    dendritic spines of granule cells, which was more pronounced in the outer than
    in the inner molecular layer. Altogether, our data showing post- and presynaptic
    reduction in surface GABAB receptors in the DG suggest the alteration of the GABAB-mediated
    modulation of excitability and synaptic transmission in granule cells, which may
    contribute to the cognitive dysfunctions in the APP/PS1 model of AD
article_number: '2459'
article_processing_charge: No
article_type: original
author:
- first_name: Alejandro
  full_name: Martín-Belmonte, Alejandro
  last_name: Martín-Belmonte
- first_name: Carolina
  full_name: Aguado, Carolina
  last_name: Aguado
- first_name: Rocío
  full_name: Alfaro-Ruíz, Rocío
  last_name: Alfaro-Ruíz
- first_name: Ana Esther
  full_name: Moreno-Martínez, Ana Esther
  last_name: Moreno-Martínez
- first_name: Luis
  full_name: De La Ossa, Luis
  last_name: De La Ossa
- first_name: José
  full_name: Martínez-Hernández, José
  last_name: Martínez-Hernández
- first_name: Alain
  full_name: Buisson, Alain
  last_name: Buisson
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Yugo
  full_name: Fukazawa, Yugo
  last_name: Fukazawa
- first_name: Rafael
  full_name: Luján, Rafael
  last_name: Luján
citation:
  ama: Martín-Belmonte A, Aguado C, Alfaro-Ruíz R, et al. Density of GABAB receptors
    is reduced in granule cells of the hippocampus in a mouse model of Alzheimer’s
    disease. <i>International journal of molecular sciences</i>. 2020;21(7). doi:<a
    href="https://doi.org/10.3390/ijms21072459">10.3390/ijms21072459</a>
  apa: Martín-Belmonte, A., Aguado, C., Alfaro-Ruíz, R., Moreno-Martínez, A. E., De
    La Ossa, L., Martínez-Hernández, J., … Luján, R. (2020). Density of GABAB receptors
    is reduced in granule cells of the hippocampus in a mouse model of Alzheimer’s
    disease. <i>International Journal of Molecular Sciences</i>. MDPI. <a href="https://doi.org/10.3390/ijms21072459">https://doi.org/10.3390/ijms21072459</a>
  chicago: Martín-Belmonte, Alejandro, Carolina Aguado, Rocío Alfaro-Ruíz, Ana Esther
    Moreno-Martínez, Luis De La Ossa, José Martínez-Hernández, Alain Buisson, Ryuichi
    Shigemoto, Yugo Fukazawa, and Rafael Luján. “Density of GABAB Receptors Is Reduced
    in Granule Cells of the Hippocampus in a Mouse Model of Alzheimer’s Disease.”
    <i>International Journal of Molecular Sciences</i>. MDPI, 2020. <a href="https://doi.org/10.3390/ijms21072459">https://doi.org/10.3390/ijms21072459</a>.
  ieee: A. Martín-Belmonte <i>et al.</i>, “Density of GABAB receptors is reduced in
    granule cells of the hippocampus in a mouse model of Alzheimer’s disease,” <i>International
    journal of molecular sciences</i>, vol. 21, no. 7. MDPI, 2020.
  ista: Martín-Belmonte A, Aguado C, Alfaro-Ruíz R, Moreno-Martínez AE, De La Ossa
    L, Martínez-Hernández J, Buisson A, Shigemoto R, Fukazawa Y, Luján R. 2020. Density
    of GABAB receptors is reduced in granule cells of the hippocampus in a mouse model
    of Alzheimer’s disease. International journal of molecular sciences. 21(7), 2459.
  mla: Martín-Belmonte, Alejandro, et al. “Density of GABAB Receptors Is Reduced in
    Granule Cells of the Hippocampus in a Mouse Model of Alzheimer’s Disease.” <i>International
    Journal of Molecular Sciences</i>, vol. 21, no. 7, 2459, MDPI, 2020, doi:<a href="https://doi.org/10.3390/ijms21072459">10.3390/ijms21072459</a>.
  short: A. Martín-Belmonte, C. Aguado, R. Alfaro-Ruíz, A.E. Moreno-Martínez, L. De
    La Ossa, J. Martínez-Hernández, A. Buisson, R. Shigemoto, Y. Fukazawa, R. Luján,
    International Journal of Molecular Sciences 21 (2020).
date_created: 2020-04-19T22:00:55Z
date_published: 2020-04-02T00:00:00Z
date_updated: 2026-04-02T14:27:06Z
day: '02'
ddc:
- '570'
department:
- _id: RySh
doi: 10.3390/ijms21072459
external_id:
  isi:
  - '000535574200201'
  pmid:
  - '32252271'
file:
- access_level: open_access
  checksum: b9d2f1657d8c4a74b01a62b474d009b0
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-20T11:43:18Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7669'
  file_name: 2020_JournMolecSciences_Martin_Belmonte.pdf
  file_size: 2941197
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '        21'
isi: 1
issue: '7'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
publication: International journal of molecular sciences
publication_identifier:
  eissn:
  - 1422-0067
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: Density of GABAB receptors is reduced in granule cells of the hippocampus in
  a mouse model of Alzheimer's disease
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 21
year: '2020'
...
---
_id: '7665'
abstract:
- lang: eng
  text: Acute brain slice preparation is a powerful experimental model for investigating
    the characteristics of synaptic function in the brain. Although brain tissue is
    usually cut at ice-cold temperature (CT) to facilitate slicing and avoid neuronal
    damage, exposure to CT causes molecular and architectural changes of synapses.
    To address these issues, we investigated ultrastructural and electrophysiological
    features of synapses in mouse acute cerebellar slices prepared at ice-cold and
    physiological temperature (PT). In the slices prepared at CT, we found significant
    spine loss and reconstruction, synaptic vesicle rearrangement and decrease in
    synaptic proteins, all of which were not detected in slices prepared at PT. Consistent
    with these structural findings, slices prepared at PT showed higher release probability.
    Furthermore, preparation at PT allows electrophysiological recording immediately
    after slicing resulting in higher detectability of long-term depression (LTD)
    after motor learning compared with that at CT. These results indicate substantial
    advantages of the slice preparation at PT for investigating synaptic functions
    in different physiological conditions.
article_number: '63'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Kohgaku
  full_name: Eguchi, Kohgaku
  id: 2B7846DC-F248-11E8-B48F-1D18A9856A87
  last_name: Eguchi
  orcid: 0000-0002-6170-2546
- first_name: Philipp
  full_name: Velicky, Philipp
  id: 39BDC62C-F248-11E8-B48F-1D18A9856A87
  last_name: Velicky
  orcid: 0000-0002-2340-7431
- first_name: Elena
  full_name: Hollergschwandtner, Elena
  id: 3C054040-F248-11E8-B48F-1D18A9856A87
  last_name: Hollergschwandtner
- first_name: Makoto
  full_name: Itakura, Makoto
  last_name: Itakura
- first_name: Yugo
  full_name: Fukazawa, Yugo
  last_name: Fukazawa
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
citation:
  ama: Eguchi K, Velicky P, Saeckl E, et al. Advantages of acute brain slices prepared
    at physiological temperature in the characterization of synaptic functions. <i>Frontiers
    in Cellular Neuroscience</i>. 2020;14. doi:<a href="https://doi.org/10.3389/fncel.2020.00063">10.3389/fncel.2020.00063</a>
  apa: Eguchi, K., Velicky, P., Saeckl, E., Itakura, M., Fukazawa, Y., Danzl, J. G.,
    &#38; Shigemoto, R. (2020). Advantages of acute brain slices prepared at physiological
    temperature in the characterization of synaptic functions. <i>Frontiers in Cellular
    Neuroscience</i>. Frontiers Media. <a href="https://doi.org/10.3389/fncel.2020.00063">https://doi.org/10.3389/fncel.2020.00063</a>
  chicago: Eguchi, Kohgaku, Philipp Velicky, Elena Saeckl, Makoto Itakura, Yugo Fukazawa,
    Johann G Danzl, and Ryuichi Shigemoto. “Advantages of Acute Brain Slices Prepared
    at Physiological Temperature in the Characterization of Synaptic Functions.” <i>Frontiers
    in Cellular Neuroscience</i>. Frontiers Media, 2020. <a href="https://doi.org/10.3389/fncel.2020.00063">https://doi.org/10.3389/fncel.2020.00063</a>.
  ieee: K. Eguchi <i>et al.</i>, “Advantages of acute brain slices prepared at physiological
    temperature in the characterization of synaptic functions,” <i>Frontiers in Cellular
    Neuroscience</i>, vol. 14. Frontiers Media, 2020.
  ista: Eguchi K, Velicky P, Saeckl E, Itakura M, Fukazawa Y, Danzl JG, Shigemoto
    R. 2020. Advantages of acute brain slices prepared at physiological temperature
    in the characterization of synaptic functions. Frontiers in Cellular Neuroscience.
    14, 63.
  mla: Eguchi, Kohgaku, et al. “Advantages of Acute Brain Slices Prepared at Physiological
    Temperature in the Characterization of Synaptic Functions.” <i>Frontiers in Cellular
    Neuroscience</i>, vol. 14, 63, Frontiers Media, 2020, doi:<a href="https://doi.org/10.3389/fncel.2020.00063">10.3389/fncel.2020.00063</a>.
  short: K. Eguchi, P. Velicky, E. Saeckl, M. Itakura, Y. Fukazawa, J.G. Danzl, R.
    Shigemoto, Frontiers in Cellular Neuroscience 14 (2020).
corr_author: '1'
date_created: 2020-04-19T22:00:55Z
date_published: 2020-03-19T00:00:00Z
date_updated: 2025-06-12T07:16:39Z
day: '19'
ddc:
- '570'
department:
- _id: JoDa
- _id: RySh
doi: 10.3389/fncel.2020.00063
ec_funded: 1
external_id:
  isi:
  - '000525582200001'
  pmid:
  - '32265664'
file:
- access_level: open_access
  checksum: 1c145123c6f8dc3e2e4bd5a66a1ad60e
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-20T10:59:49Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7668'
  file_name: 2020_FrontiersCellularNeurosc_Eguchi.pdf
  file_size: 9227283
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '        14'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 2659CC84-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '793482'
  name: 'Ultrastructural analysis of phosphoinositides in nerve terminals: distribution,
    dynamics and physiological roles in synaptic transmission'
- _id: 25CA28EA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694539'
  name: 'In situ analysis of single channel subunit composition in neurons: physiological
    implication in synaptic plasticity and behaviour'
- _id: 265CB4D0-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03600
  name: Optical control of synaptic function via adhesion molecules
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: Frontiers in Cellular Neuroscience
publication_identifier:
  issn:
  - 1662-5102
publication_status: published
publisher: Frontiers Media
quality_controlled: '1'
scopus_import: '1'
status: public
title: Advantages of acute brain slices prepared at physiological temperature in the
  characterization of synaptic functions
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2020'
...
---
_id: '7666'
abstract:
- lang: eng
  text: Generalizing the decomposition of a connected planar graph into a tree and
    a dual tree, we prove a combinatorial analog of the classic Helmholtz–Hodge decomposition
    of a smooth vector field. Specifically, we show that for every polyhedral complex,
    K, and every dimension, p, there is a partition of the set of p-cells into a maximal
    p-tree, a maximal p-cotree, and a collection of p-cells whose cardinality is the
    p-th reduced Betti number of K. Given an ordering of the p-cells, this tri-partition
    is unique, and it can be computed by a matrix reduction algorithm that also constructs
    canonical bases of cycle and boundary groups.
acknowledgement: This project has received funding from the European Research Council
  under the European Union’s Horizon 2020 research and innovation programme (Grant
  Agreement No. 78818 Alpha). It is also partially supported by the DFG Collaborative
  Research Center TRR 109, ‘Discretization in Geometry and Dynamics’, through Grant
  No. I02979-N35 of the Austrian Science Fund (FWF).
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Katharina
  full_name: Ölsböck, Katharina
  id: 4D4AA390-F248-11E8-B48F-1D18A9856A87
  last_name: Ölsböck
  orcid: 0000-0002-4672-8297
citation:
  ama: Edelsbrunner H, Ölsböck K. Tri-partitions and bases of an ordered complex.
    <i>Discrete and Computational Geometry</i>. 2020;64:759-775. doi:<a href="https://doi.org/10.1007/s00454-020-00188-x">10.1007/s00454-020-00188-x</a>
  apa: Edelsbrunner, H., &#38; Ölsböck, K. (2020). Tri-partitions and bases of an
    ordered complex. <i>Discrete and Computational Geometry</i>. Springer Nature.
    <a href="https://doi.org/10.1007/s00454-020-00188-x">https://doi.org/10.1007/s00454-020-00188-x</a>
  chicago: Edelsbrunner, Herbert, and Katharina Ölsböck. “Tri-Partitions and Bases
    of an Ordered Complex.” <i>Discrete and Computational Geometry</i>. Springer Nature,
    2020. <a href="https://doi.org/10.1007/s00454-020-00188-x">https://doi.org/10.1007/s00454-020-00188-x</a>.
  ieee: H. Edelsbrunner and K. Ölsböck, “Tri-partitions and bases of an ordered complex,”
    <i>Discrete and Computational Geometry</i>, vol. 64. Springer Nature, pp. 759–775,
    2020.
  ista: Edelsbrunner H, Ölsböck K. 2020. Tri-partitions and bases of an ordered complex.
    Discrete and Computational Geometry. 64, 759–775.
  mla: Edelsbrunner, Herbert, and Katharina Ölsböck. “Tri-Partitions and Bases of
    an Ordered Complex.” <i>Discrete and Computational Geometry</i>, vol. 64, Springer
    Nature, 2020, pp. 759–75, doi:<a href="https://doi.org/10.1007/s00454-020-00188-x">10.1007/s00454-020-00188-x</a>.
  short: H. Edelsbrunner, K. Ölsböck, Discrete and Computational Geometry 64 (2020)
    759–775.
corr_author: '1'
date_created: 2020-04-19T22:00:56Z
date_published: 2020-03-20T00:00:00Z
date_updated: 2025-04-14T07:48:36Z
day: '20'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.1007/s00454-020-00188-x
ec_funded: 1
external_id:
  isi:
  - '000520918800001'
file:
- access_level: open_access
  checksum: f8cc96e497f00c38340b5dafe0cb91d7
  content_type: application/pdf
  creator: dernst
  date_created: 2020-11-20T13:22:21Z
  date_updated: 2020-11-20T13:22:21Z
  file_id: '8786'
  file_name: 2020_DiscreteCompGeo_Edelsbrunner.pdf
  file_size: 701673
  relation: main_file
  success: 1
file_date_updated: 2020-11-20T13:22:21Z
has_accepted_license: '1'
intvolume: '        64'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 759-775
project:
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
publication: Discrete and Computational Geometry
publication_identifier:
  eissn:
  - '14320444'
  issn:
  - '01795376'
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Tri-partitions and bases of an ordered complex
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 64
year: '2020'
...
---
_id: '7672'
abstract:
- lang: eng
  text: Large overpotentials upon discharge and charge of Li-O2 cells have motivated
    extensive research into heterogeneous solid electrocatalysts or non-carbon electrodes
    with the aim to improve rate capability, round-trip efficiency and cycle life.
    These features are equally governed by parasitic reactions, which are now recognized
    to be caused by the highly reactive singlet oxygen (1O2). However, the link between
    the presence of electrocatalysts and 1O2 formation in metal-O2 cells is unknown.
    Here, we show that, compared to pristine carbon black electrodes, a representative
    selection of electrocatalysts or non-carbon electrodes (noble metal, transition
    metal compounds) may both slightly reduce or severely increase the 1O2 formation.
    The individual reaction steps, where the surfaces impact the 1O2 yield are deciphered,
    showing that 1O2 yield from superoxide disproportionation as well as the decomposition
    of trace H2O2 are sensitive to catalysts. Transition metal compounds in general
    are prone to increase 1O2.
acknowledgement: S.A.F. thanks the International Society of Electrochemistry for awarding
  the Tajima Prize 2019 “in recognition of outstanding re- searches on Li-Air batteries
  by the use of a range of in-situ elec- trochemical methods to achieve comprehensive
  understanding of the reactions taking place at the oxygen electrode”. This article
  is dedicated to the special issue of Electrochmica Acta associated with the awarding
  conference. S.A.F. is indebted to and the Austrian Federal Ministry of Science,
  Research and Economy and the Austrian Research Promotion Agency (grant No. 845364
  ) and the European Research Council (ERC) under the European Union’s Horizon 2020
  research and innovation programme (grant agreement No 636069). The authors thank
  J. Schlegl for manufacturing instrumentation, M. Winkler of Acib GmbH and G. Strohmeier
  for help with HPLC measurements, S. Eder for cyclic voltammetry measurements, and
  C. Slugovc for discussions and continuous support. We thank S. Borisov for access
  and advice with fluorescence measurements. We thank EL-Cell GmbH, Hamburg, Germany
  for providing the PAT-Cell-Press electrochemical cell.
article_number: '137175'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Aleksej
  full_name: Samojlov, Aleksej
  last_name: Samojlov
- first_name: David
  full_name: Schuster, David
  last_name: Schuster
- first_name: Jürgen
  full_name: Kahr, Jürgen
  last_name: Kahr
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
citation:
  ama: Samojlov A, Schuster D, Kahr J, Freunberger SA. Surface and catalyst driven
    singlet oxygen formation in Li-O2 cells. <i>Electrochimica Acta</i>. 2020;362(12).
    doi:<a href="https://doi.org/10.1016/j.electacta.2020.137175">10.1016/j.electacta.2020.137175</a>
  apa: Samojlov, A., Schuster, D., Kahr, J., &#38; Freunberger, S. A. (2020). Surface
    and catalyst driven singlet oxygen formation in Li-O2 cells. <i>Electrochimica
    Acta</i>. Elsevier. <a href="https://doi.org/10.1016/j.electacta.2020.137175">https://doi.org/10.1016/j.electacta.2020.137175</a>
  chicago: Samojlov, Aleksej, David Schuster, Jürgen Kahr, and Stefan Alexander Freunberger.
    “Surface and Catalyst Driven Singlet Oxygen Formation in Li-O2 Cells.” <i>Electrochimica
    Acta</i>. Elsevier, 2020. <a href="https://doi.org/10.1016/j.electacta.2020.137175">https://doi.org/10.1016/j.electacta.2020.137175</a>.
  ieee: A. Samojlov, D. Schuster, J. Kahr, and S. A. Freunberger, “Surface and catalyst
    driven singlet oxygen formation in Li-O2 cells,” <i>Electrochimica Acta</i>, vol.
    362, no. 12. Elsevier, 2020.
  ista: Samojlov A, Schuster D, Kahr J, Freunberger SA. 2020. Surface and catalyst
    driven singlet oxygen formation in Li-O2 cells. Electrochimica Acta. 362(12),
    137175.
  mla: Samojlov, Aleksej, et al. “Surface and Catalyst Driven Singlet Oxygen Formation
    in Li-O2 Cells.” <i>Electrochimica Acta</i>, vol. 362, no. 12, 137175, Elsevier,
    2020, doi:<a href="https://doi.org/10.1016/j.electacta.2020.137175">10.1016/j.electacta.2020.137175</a>.
  short: A. Samojlov, D. Schuster, J. Kahr, S.A. Freunberger, Electrochimica Acta
    362 (2020).
corr_author: '1'
date_created: 2020-04-20T19:29:31Z
date_published: 2020-12-01T00:00:00Z
date_updated: 2024-10-09T20:59:27Z
day: '01'
ddc:
- '540'
department:
- _id: StFr
doi: 10.1016/j.electacta.2020.137175
external_id:
  isi:
  - '000582869700060'
file:
- access_level: open_access
  checksum: 1ab1aa2024d431e2a089ea336bc08298
  content_type: application/pdf
  creator: dernst
  date_created: 2020-10-01T13:20:45Z
  date_updated: 2020-10-01T13:20:45Z
  file_id: '8593'
  file_name: 2020_ElectrochimicaActa_Samojlov.pdf
  file_size: 1404030
  relation: main_file
  success: 1
file_date_updated: 2020-10-01T13:20:45Z
has_accepted_license: '1'
intvolume: '       362'
isi: 1
issue: '12'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
publication: Electrochimica Acta
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Surface and catalyst driven singlet oxygen formation in Li-O2 cells
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 362
year: '2020'
...
---
_id: '7683'
abstract:
- lang: eng
  text: For any free oriented Borel–Moore homology theory A, we construct an associative
    product on the A-theory of the stack of Higgs torsion sheaves over a projective
    curve C. We show that the resulting algebra AHa0C admits a natural shuffle presentation,
    and prove it is faithful when A is replaced with usual Borel–Moore homology groups.
    We also introduce moduli spaces of stable triples, heavily inspired by Nakajima
    quiver varieties, whose A-theory admits an AHa0C-action. These triples can be
    interpreted as certain sheaves on PC(ωC⊕OC). In particular, we obtain an action
    of AHa0C on the cohomology of Hilbert schemes of points on T∗C.
article_number: '30'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Sasha
  full_name: Minets, Sasha
  id: 3E7C5304-F248-11E8-B48F-1D18A9856A87
  last_name: Minets
  orcid: 0000-0003-3883-1806
citation:
  ama: Minets S. Cohomological Hall algebras for Higgs torsion sheaves, moduli of
    triples and sheaves on surfaces. <i>Selecta Mathematica, New Series</i>. 2020;26(2).
    doi:<a href="https://doi.org/10.1007/s00029-020-00553-x">10.1007/s00029-020-00553-x</a>
  apa: Minets, S. (2020). Cohomological Hall algebras for Higgs torsion sheaves, moduli
    of triples and sheaves on surfaces. <i>Selecta Mathematica, New Series</i>. Springer
    Nature. <a href="https://doi.org/10.1007/s00029-020-00553-x">https://doi.org/10.1007/s00029-020-00553-x</a>
  chicago: Minets, Sasha. “Cohomological Hall Algebras for Higgs Torsion Sheaves,
    Moduli of Triples and Sheaves on Surfaces.” <i>Selecta Mathematica, New Series</i>.
    Springer Nature, 2020. <a href="https://doi.org/10.1007/s00029-020-00553-x">https://doi.org/10.1007/s00029-020-00553-x</a>.
  ieee: S. Minets, “Cohomological Hall algebras for Higgs torsion sheaves, moduli
    of triples and sheaves on surfaces,” <i>Selecta Mathematica, New Series</i>, vol.
    26, no. 2. Springer Nature, 2020.
  ista: Minets S. 2020. Cohomological Hall algebras for Higgs torsion sheaves, moduli
    of triples and sheaves on surfaces. Selecta Mathematica, New Series. 26(2), 30.
  mla: Minets, Sasha. “Cohomological Hall Algebras for Higgs Torsion Sheaves, Moduli
    of Triples and Sheaves on Surfaces.” <i>Selecta Mathematica, New Series</i>, vol.
    26, no. 2, 30, Springer Nature, 2020, doi:<a href="https://doi.org/10.1007/s00029-020-00553-x">10.1007/s00029-020-00553-x</a>.
  short: S. Minets, Selecta Mathematica, New Series 26 (2020).
corr_author: '1'
date_created: 2020-04-26T22:00:44Z
date_published: 2020-04-15T00:00:00Z
date_updated: 2025-05-20T10:38:32Z
day: '15'
ddc:
- '510'
department:
- _id: TaHa
doi: 10.1007/s00029-020-00553-x
external_id:
  arxiv:
  - '1801.01429'
  isi:
  - '000526036400001'
file:
- access_level: open_access
  checksum: 2368c4662629b4759295eb365323b2ad
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-28T10:57:58Z
  date_updated: 2020-07-14T12:48:02Z
  file_id: '7690'
  file_name: 2020_SelectaMathematica_Minets.pdf
  file_size: 792469
  relation: main_file
file_date_updated: 2020-07-14T12:48:02Z
has_accepted_license: '1'
intvolume: '        26'
isi: 1
issue: '2'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
project:
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: Selecta Mathematica, New Series
publication_identifier:
  eissn:
  - 1420-9020
  issn:
  - 1022-1824
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Cohomological Hall algebras for Higgs torsion sheaves, moduli of triples and
  sheaves on surfaces
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 9947682f-b9fa-11ee-9c4a-b3ffaafe6614
volume: 26
year: '2020'
...
---
_id: '7684'
article_processing_charge: No
article_type: original
author:
- first_name: Igor
  full_name: Gridchyn, Igor
  id: 4B60654C-F248-11E8-B48F-1D18A9856A87
  last_name: Gridchyn
  orcid: 0000-0002-1807-1929
- first_name: Philipp
  full_name: Schönenberger, Philipp
  id: 3B9D816C-F248-11E8-B48F-1D18A9856A87
  last_name: Schönenberger
- first_name: Joseph
  full_name: O'Neill, Joseph
  id: 426376DC-F248-11E8-B48F-1D18A9856A87
  last_name: O'Neill
- first_name: Jozsef L
  full_name: Csicsvari, Jozsef L
  id: 3FA14672-F248-11E8-B48F-1D18A9856A87
  last_name: Csicsvari
  orcid: 0000-0002-5193-4036
citation:
  ama: Gridchyn I, Schönenberger P, O’Neill J, Csicsvari JL. Assembly-specific disruption
    of hippocampal replay leads to selective memory deficit. <i>Neuron</i>. 2020;106(2):291-300.e6.
    doi:<a href="https://doi.org/10.1016/j.neuron.2020.01.021">10.1016/j.neuron.2020.01.021</a>
  apa: Gridchyn, I., Schönenberger, P., O’Neill, J., &#38; Csicsvari, J. L. (2020).
    Assembly-specific disruption of hippocampal replay leads to selective memory deficit.
    <i>Neuron</i>. Elsevier. <a href="https://doi.org/10.1016/j.neuron.2020.01.021">https://doi.org/10.1016/j.neuron.2020.01.021</a>
  chicago: Gridchyn, Igor, Philipp Schönenberger, Joseph O’Neill, and Jozsef L Csicsvari.
    “Assembly-Specific Disruption of Hippocampal Replay Leads to Selective Memory
    Deficit.” <i>Neuron</i>. Elsevier, 2020. <a href="https://doi.org/10.1016/j.neuron.2020.01.021">https://doi.org/10.1016/j.neuron.2020.01.021</a>.
  ieee: I. Gridchyn, P. Schönenberger, J. O’Neill, and J. L. Csicsvari, “Assembly-specific
    disruption of hippocampal replay leads to selective memory deficit,” <i>Neuron</i>,
    vol. 106, no. 2. Elsevier, p. 291–300.e6, 2020.
  ista: Gridchyn I, Schönenberger P, O’Neill J, Csicsvari JL. 2020. Assembly-specific
    disruption of hippocampal replay leads to selective memory deficit. Neuron. 106(2),
    291–300.e6.
  mla: Gridchyn, Igor, et al. “Assembly-Specific Disruption of Hippocampal Replay
    Leads to Selective Memory Deficit.” <i>Neuron</i>, vol. 106, no. 2, Elsevier,
    2020, p. 291–300.e6, doi:<a href="https://doi.org/10.1016/j.neuron.2020.01.021">10.1016/j.neuron.2020.01.021</a>.
  short: I. Gridchyn, P. Schönenberger, J. O’Neill, J.L. Csicsvari, Neuron 106 (2020)
    291–300.e6.
date_created: 2020-04-26T22:00:45Z
date_published: 2020-04-22T00:00:00Z
date_updated: 2026-06-18T19:26:54Z
day: '22'
ddc:
- '570'
department:
- _id: JoCs
doi: 10.1016/j.neuron.2020.01.021
ec_funded: 1
external_id:
  isi:
  - '000528268200013'
  pmid:
  - '32070475'
intvolume: '       106'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.neuron.2020.01.021
month: '04'
oa: 1
oa_version: Published Version
page: 291-300.e6
pmid: 1
project:
- _id: 257A4776-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '281511'
  name: Memory-related information processing in neuronal circuits of the hippocampus
    and entorhinal cortex
publication: Neuron
publication_identifier:
  eissn:
  - 1097-4199
  issn:
  - 0896-6273
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/librarian-of-memory/
scopus_import: '1'
status: public
title: Assembly-specific disruption of hippocampal replay leads to selective memory
  deficit
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 106
year: '2020'
...
---
_id: '7686'
abstract:
- lang: eng
  text: 'The agricultural green revolution spectacularly enhanced crop yield and lodging
    resistance with modified DELLA-mediated gibberellin signaling. However, this was
    achieved at the expense of reduced nitrogen-use efficiency (NUE). Recently, Wu
    et al. revealed novel gibberellin signaling that provides a blueprint for improving
    tillering and NUE in Green Revolution varieties (GRVs). '
article_processing_charge: No
article_type: original
author:
- first_name: Huidan
  full_name: Xue, Huidan
  last_name: Xue
- first_name: Yuzhou
  full_name: Zhang, Yuzhou
  id: 3B6137F2-F248-11E8-B48F-1D18A9856A87
  last_name: Zhang
  orcid: 0000-0003-2627-6956
- first_name: Guanghui
  full_name: Xiao, Guanghui
  last_name: Xiao
citation:
  ama: 'Xue H, Zhang Y, Xiao G. Neo-gibberellin signaling: Guiding the next generation
    of the green revolution. <i>Trends in Plant Science</i>. 2020;25(6):520-522. doi:<a
    href="https://doi.org/10.1016/j.tplants.2020.04.001">10.1016/j.tplants.2020.04.001</a>'
  apa: 'Xue, H., Zhang, Y., &#38; Xiao, G. (2020). Neo-gibberellin signaling: Guiding
    the next generation of the green revolution. <i>Trends in Plant Science</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.tplants.2020.04.001">https://doi.org/10.1016/j.tplants.2020.04.001</a>'
  chicago: 'Xue, Huidan, Yuzhou Zhang, and Guanghui Xiao. “Neo-Gibberellin Signaling:
    Guiding the next Generation of the Green Revolution.” <i>Trends in Plant Science</i>.
    Elsevier, 2020. <a href="https://doi.org/10.1016/j.tplants.2020.04.001">https://doi.org/10.1016/j.tplants.2020.04.001</a>.'
  ieee: 'H. Xue, Y. Zhang, and G. Xiao, “Neo-gibberellin signaling: Guiding the next
    generation of the green revolution,” <i>Trends in Plant Science</i>, vol. 25,
    no. 6. Elsevier, pp. 520–522, 2020.'
  ista: 'Xue H, Zhang Y, Xiao G. 2020. Neo-gibberellin signaling: Guiding the next
    generation of the green revolution. Trends in Plant Science. 25(6), 520–522.'
  mla: 'Xue, Huidan, et al. “Neo-Gibberellin Signaling: Guiding the next Generation
    of the Green Revolution.” <i>Trends in Plant Science</i>, vol. 25, no. 6, Elsevier,
    2020, pp. 520–22, doi:<a href="https://doi.org/10.1016/j.tplants.2020.04.001">10.1016/j.tplants.2020.04.001</a>.'
  short: H. Xue, Y. Zhang, G. Xiao, Trends in Plant Science 25 (2020) 520–522.
date_created: 2020-04-26T22:00:46Z
date_published: 2020-06-01T00:00:00Z
date_updated: 2025-06-25T10:59:39Z
day: '01'
department:
- _id: JiFr
doi: 10.1016/j.tplants.2020.04.001
external_id:
  isi:
  - '000533518400003'
  pmid:
  - '32407691'
intvolume: '        25'
isi: 1
issue: '6'
language:
- iso: eng
month: '06'
oa_version: None
page: 520-522
pmid: 1
publication: Trends in Plant Science
publication_identifier:
  issn:
  - 1360-1385
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Neo-gibberellin signaling: Guiding the next generation of the green revolution'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 25
year: '2020'
...
---
_id: '7687'
abstract:
- lang: eng
  text: A working group, which was established within the Network of Repository Managers  (RepManNet),  has  dealt  with  common  certifications  for  repositories.  In
    addition,  current  requirements  of  the  research  funding  agencies  FWF  and  EU  were
    also taken into account. The Core Trust Seal was examined in more detail. For
    this purpose,  a  questionnaire  was  sent  to  those  organizations  that  are  already  certified
    with CTS in Austria. The answers were summarized and evaluated anonymously. It
    is recommended to go for a repository certification. Moreover, the development
    of a DINI certificate in Austria is strongly suggested.
- lang: ger
  text: ' Eine Arbeitsgruppe, die im Rahmen des Netzwerks für RepositorienmanagerInnen
    (RepManNet) entstanden ist, hat sich mit gängigen Zertifizierungen für Repositorien
    beschäftigt. Weiters wurden aktuelle Vorgaben der Forschungsförderer FWF und EU
    herangezogen. Das Core Trust Seal wurde genauer betrachtet. Hierfür  wurden jenen  Organisationen,  die  in  Österreich  bereits  mit  CTS  zertifiziert
    sind, ein Fragebogen übermittelt. Die Antworten wurden anonymisiert zusammengefasst
    und ausgewertet. Plädiert wird für eine Zertifizierung von Repositorien und die
    Entwicklung einer DINI-Zertifizierung in Österreich.'
article_processing_charge: No
article_type: original
author:
- first_name: Doris
  full_name: Ernst, Doris
  id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
  last_name: Ernst
  orcid: 0000-0002-2354-0195
- first_name: Gertraud
  full_name: Novotny, Gertraud
  last_name: Novotny
- first_name: Eva Maria
  full_name: Schönher, Eva Maria
  last_name: Schönher
citation:
  ama: Ernst D, Novotny G, Schönher EM. (Core Trust) Seal your repository! <i>Mitteilungen
    der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare</i>. 2020;73(1):46-59.
    doi:<a href="https://doi.org/10.31263/voebm.v73i1.3491">10.31263/voebm.v73i1.3491</a>
  apa: Ernst, D., Novotny, G., &#38; Schönher, E. M. (2020). (Core Trust) Seal your
    repository! <i>Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen
    und Bibliothekare</i>. Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare.
    <a href="https://doi.org/10.31263/voebm.v73i1.3491">https://doi.org/10.31263/voebm.v73i1.3491</a>
  chicago: Ernst, Doris, Gertraud Novotny, and Eva Maria Schönher. “(Core Trust) Seal
    your repository!” <i>Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen
    und Bibliothekare</i>. Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare,
    2020. <a href="https://doi.org/10.31263/voebm.v73i1.3491">https://doi.org/10.31263/voebm.v73i1.3491</a>.
  ieee: D. Ernst, G. Novotny, and E. M. Schönher, “(Core Trust) Seal your repository!,”
    <i>Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare</i>,
    vol. 73, no. 1. Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare,
    pp. 46–59, 2020.
  ista: Ernst D, Novotny G, Schönher EM. 2020. (Core Trust) Seal your repository!
    Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare.
    73(1), 46–59.
  mla: Ernst, Doris, et al. “(Core Trust) Seal your repository!” <i>Mitteilungen der
    Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare</i>, vol. 73,
    no. 1, Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare, 2020,
    pp. 46–59, doi:<a href="https://doi.org/10.31263/voebm.v73i1.3491">10.31263/voebm.v73i1.3491</a>.
  short: D. Ernst, G. Novotny, E.M. Schönher, Mitteilungen der Vereinigung Österreichischer
    Bibliothekarinnen und Bibliothekare 73 (2020) 46–59.
corr_author: '1'
date_created: 2020-04-28T08:37:38Z
date_published: 2020-04-28T00:00:00Z
date_updated: 2026-03-16T13:47:31Z
day: '28'
ddc:
- '020'
department:
- _id: E-Lib
doi: 10.31263/voebm.v73i1.3491
external_id:
  oaworkid:
  - W3021112752
file:
- access_level: open_access
  checksum: fee784f15a489deb7def6ccf8c5bf8c3
  content_type: application/pdf
  creator: dernst
  date_created: 2020-06-17T10:50:13Z
  date_updated: 2024-03-12T10:12:33Z
  file_id: '7970'
  file_name: 2020_VOEB_Ernst.pdf
  file_size: 579291
  relation: main_file
file_date_updated: 2024-03-12T10:12:33Z
has_accepted_license: '1'
intvolume: '        73'
issue: '1'
language:
- iso: ger
month: '04'
oa: 1
oa_version: Published Version
oaworkid: 1
page: 46-59
popular_science: '1'
publication: Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare
publication_identifier:
  issn:
  - 1022-2588
publication_status: published
publisher: Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare
scopus_import: '1'
status: public
title: (Core Trust) Seal your repository!
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 73
year: '2020'
...
---
_id: '7689'
abstract:
- lang: eng
  text: "These are the supplementary research data to the publication \"Zero field
    splitting of heavy-hole states in quantum dots\". All matrix files have the same
    format. Within each column the bias voltage is changed. Each column corresponds
    to either a different gate voltage or magnetic field. The voltage values are given
    in mV, the current values in pA. Find a specific description in the included Readme
    file.\r\n"
article_processing_charge: No
author:
- first_name: Georgios
  full_name: Katsaros, Georgios
  id: 38DB5788-F248-11E8-B48F-1D18A9856A87
  last_name: Katsaros
  orcid: 0000-0001-8342-202X
citation:
  ama: Katsaros G. Supplementary data for “Zero field splitting of heavy-hole states
    in quantum dots.” 2020. doi:<a href="https://doi.org/10.15479/AT:ISTA:7689">10.15479/AT:ISTA:7689</a>
  apa: Katsaros, G. (2020). Supplementary data for “Zero field splitting of heavy-hole
    states in quantum dots.” Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:7689">https://doi.org/10.15479/AT:ISTA:7689</a>
  chicago: Katsaros, Georgios. “Supplementary Data for ‘Zero Field Splitting of Heavy-Hole
    States in Quantum Dots.’” Institute of Science and Technology Austria, 2020. <a
    href="https://doi.org/10.15479/AT:ISTA:7689">https://doi.org/10.15479/AT:ISTA:7689</a>.
  ieee: G. Katsaros, “Supplementary data for ‘Zero field splitting of heavy-hole states
    in quantum dots.’” Institute of Science and Technology Austria, 2020.
  ista: Katsaros G. 2020. Supplementary data for ‘Zero field splitting of heavy-hole
    states in quantum dots’, Institute of Science and Technology Austria, <a href="https://doi.org/10.15479/AT:ISTA:7689">10.15479/AT:ISTA:7689</a>.
  mla: Katsaros, Georgios. <i>Supplementary Data for “Zero Field Splitting of Heavy-Hole
    States in Quantum Dots.”</i> Institute of Science and Technology Austria, 2020,
    doi:<a href="https://doi.org/10.15479/AT:ISTA:7689">10.15479/AT:ISTA:7689</a>.
  short: G. Katsaros, (2020).
contributor:
- contributor_type: contact_person
  first_name: Georgios
  id: 38DB5788-F248-11E8-B48F-1D18A9856A87
  last_name: Katsaros
corr_author: '1'
date_created: 2020-05-01T15:14:46Z
date_published: 2020-05-01T00:00:00Z
date_updated: 2025-04-15T08:39:16Z
day: '01'
ddc:
- '530'
department:
- _id: GeKa
doi: 10.15479/AT:ISTA:7689
ec_funded: 1
file:
- access_level: open_access
  checksum: d23c0cb9e2d19e14e2f902b88b97c05d
  content_type: application/x-zip-compressed
  creator: gkatsaro
  date_created: 2020-05-01T15:13:28Z
  date_updated: 2020-07-14T12:48:02Z
  file_id: '7786'
  file_name: DOI_ZeroFieldSplitting.zip
  file_size: 5514403
  relation: main_file
file_date_updated: 2020-07-14T12:48:02Z
has_accepted_license: '1'
month: '05'
oa: 1
oa_version: Published Version
project:
- _id: 237E5020-32DE-11EA-91FC-C7463DDC885E
  call_identifier: H2020
  grant_number: '862046'
  name: TOPOLOGICALLY PROTECTED AND SCALABLE QUANTUM BITS
- _id: 237B3DA4-32DE-11EA-91FC-C7463DDC885E
  call_identifier: FWF
  grant_number: P32235
  name: Towards scalable hut wire quantum devices
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '8203'
    relation: used_in_publication
    status: public
status: public
title: Supplementary data for "Zero field splitting of heavy-hole states in quantum
  dots"
tmp:
  image: /images/cc_0.png
  legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
  name: Creative Commons Public Domain Dedication (CC0 1.0)
  short: CC0 (1.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '7695'
abstract:
- lang: eng
  text: The TPLATE complex (TPC) is a key endocytic adaptor protein complex in plants.
    TPC in Arabidopsis (Arabidopsis thaliana) contains six evolutionarily conserved
    subunits and two plant-specific subunits, AtEH1/Pan1 and AtEH2/Pan1, although
    cytoplasmic proteins are not associated with the hexameric subcomplex in the cytoplasm.
    To investigate the dynamic assembly of the octameric TPC at the plasma membrane
    (PM), we performed state-of-the-art dual-color live cell imaging at physiological
    and lowered temperatures. Lowering the temperature slowed down endocytosis, thereby
    enhancing the temporal resolution of the differential recruitment of endocytic
    components. Under both normal and lowered temperature conditions, the core TPC
    subunit TPLATE and the AtEH/Pan1 proteins exhibited simultaneous recruitment at
    the PM. These results, together with co-localization analysis of different TPC
    subunits, allow us to conclude that TPC in plant cells is not recruited to the
    PM sequentially but as an octameric complex.
article_processing_charge: No
article_type: original
author:
- first_name: J
  full_name: Wang, J
  last_name: Wang
- first_name: E
  full_name: Mylle, E
  last_name: Mylle
- first_name: Alexander J
  full_name: Johnson, Alexander J
  id: 46A62C3A-F248-11E8-B48F-1D18A9856A87
  last_name: Johnson
  orcid: 0000-0002-2739-8843
- first_name: N
  full_name: Besbrugge, N
  last_name: Besbrugge
- first_name: G
  full_name: De Jaeger, G
  last_name: De Jaeger
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: R
  full_name: Pleskot, R
  last_name: Pleskot
- first_name: D
  full_name: van Damme, D
  last_name: van Damme
citation:
  ama: Wang J, Mylle E, Johnson AJ, et al. High temporal resolution reveals simultaneous
    plasma membrane recruitment of TPLATE complex subunits. <i>Plant Physiology</i>.
    2020;183(3):986-997. doi:<a href="https://doi.org/10.1104/pp.20.00178">10.1104/pp.20.00178</a>
  apa: Wang, J., Mylle, E., Johnson, A. J., Besbrugge, N., De Jaeger, G., Friml, J.,
    … van Damme, D. (2020). High temporal resolution reveals simultaneous plasma membrane
    recruitment of TPLATE complex subunits. <i>Plant Physiology</i>. American Society
    of Plant Biologists. <a href="https://doi.org/10.1104/pp.20.00178">https://doi.org/10.1104/pp.20.00178</a>
  chicago: Wang, J, E Mylle, Alexander J Johnson, N Besbrugge, G De Jaeger, Jiří Friml,
    R Pleskot, and D van Damme. “High Temporal Resolution Reveals Simultaneous Plasma
    Membrane Recruitment of TPLATE Complex Subunits.” <i>Plant Physiology</i>. American
    Society of Plant Biologists, 2020. <a href="https://doi.org/10.1104/pp.20.00178">https://doi.org/10.1104/pp.20.00178</a>.
  ieee: J. Wang <i>et al.</i>, “High temporal resolution reveals simultaneous plasma
    membrane recruitment of TPLATE complex subunits,” <i>Plant Physiology</i>, vol.
    183, no. 3. American Society of Plant Biologists, pp. 986–997, 2020.
  ista: Wang J, Mylle E, Johnson AJ, Besbrugge N, De Jaeger G, Friml J, Pleskot R,
    van Damme D. 2020. High temporal resolution reveals simultaneous plasma membrane
    recruitment of TPLATE complex subunits. Plant Physiology. 183(3), 986–997.
  mla: Wang, J., et al. “High Temporal Resolution Reveals Simultaneous Plasma Membrane
    Recruitment of TPLATE Complex Subunits.” <i>Plant Physiology</i>, vol. 183, no.
    3, American Society of Plant Biologists, 2020, pp. 986–97, doi:<a href="https://doi.org/10.1104/pp.20.00178">10.1104/pp.20.00178</a>.
  short: J. Wang, E. Mylle, A.J. Johnson, N. Besbrugge, G. De Jaeger, J. Friml, R.
    Pleskot, D. van Damme, Plant Physiology 183 (2020) 986–997.
date_created: 2020-04-29T15:23:00Z
date_published: 2020-07-01T00:00:00Z
date_updated: 2025-04-15T07:32:09Z
day: '01'
department:
- _id: JiFr
doi: 10.1104/pp.20.00178
external_id:
  isi:
  - '000550682000018'
  pmid:
  - '32321842'
intvolume: '       183'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1101/2020.02.13.948109
month: '07'
oa: 1
oa_version: Preprint
page: 986-997
pmid: 1
project:
- _id: 26538374-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03630
  name: Molecular mechanisms of endocytic cargo recognition in plants
publication: Plant Physiology
publication_identifier:
  eissn:
  - 1532-2548
  issn:
  - 0032-0889
publication_status: published
publisher: American Society of Plant Biologists
quality_controlled: '1'
scopus_import: '1'
status: public
title: High temporal resolution reveals simultaneous plasma membrane recruitment of
  TPLATE complex subunits
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 183
year: '2020'
...
---
_id: '7697'
abstract:
- lang: eng
  text: "* Morphogenesis and adaptive tropic growth in plants depend on gradients
    of the phytohormone auxin, mediated by the membrane‐based PIN‐FORMED (PIN) auxin
    transporters. PINs localize to a particular side of the plasma membrane (PM) or
    to the endoplasmic reticulum (ER) to directionally transport auxin and maintain
    intercellular and intracellular auxin homeostasis, respectively. However, the
    molecular cues that confer their diverse cellular localizations remain largely
    unknown.\r\n* In this study, we systematically swapped the domains between ER‐
    and PM‐localized PIN proteins, as well as between apical and basal PM‐localized
    PINs from Arabidopsis thaliana , to shed light on why PIN family members with
    similar topological structures reside at different membrane compartments within
    cells.\r\n* Our results show that not only do the N‐ and C‐terminal transmembrane
    domains (TMDs) and central hydrophilic loop contribute to their differential subcellular
    localizations and cellular polarity, but that the pairwise‐matched N‐ and C‐terminal
    TMDs resulting from intramolecular domain–domain coevolution are also crucial
    for their divergent patterns of localization.\r\n* These findings illustrate the
    complexity of the evolutionary path of PIN proteins in acquiring their plethora
    of developmental functions and adaptive growth in plants."
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Yuzhou
  full_name: Zhang, Yuzhou
  id: 3B6137F2-F248-11E8-B48F-1D18A9856A87
  last_name: Zhang
  orcid: 0000-0003-2627-6956
- first_name: Corinna
  full_name: Hartinger, Corinna
  id: AEFB2266-8ABF-11EA-AA39-812C3623CBE4
  last_name: Hartinger
  orcid: 0000-0003-1618-2737
- first_name: Xiaojuan
  full_name: Wang, Xiaojuan
  last_name: Wang
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Zhang Y, Hartinger C, Wang X, Friml J. Directional auxin fluxes in plants by
    intramolecular domain‐domain co‐evolution of PIN auxin transporters. <i>New Phytologist</i>.
    2020;227(5):1406-1416. doi:<a href="https://doi.org/10.1111/nph.16629">10.1111/nph.16629</a>
  apa: Zhang, Y., Hartinger, C., Wang, X., &#38; Friml, J. (2020). Directional auxin
    fluxes in plants by intramolecular domain‐domain co‐evolution of PIN auxin transporters.
    <i>New Phytologist</i>. Wiley. <a href="https://doi.org/10.1111/nph.16629">https://doi.org/10.1111/nph.16629</a>
  chicago: Zhang, Yuzhou, Corinna Hartinger, Xiaojuan Wang, and Jiří Friml. “Directional
    Auxin Fluxes in Plants by Intramolecular Domain‐domain Co‐evolution of PIN Auxin
    Transporters.” <i>New Phytologist</i>. Wiley, 2020. <a href="https://doi.org/10.1111/nph.16629">https://doi.org/10.1111/nph.16629</a>.
  ieee: Y. Zhang, C. Hartinger, X. Wang, and J. Friml, “Directional auxin fluxes in
    plants by intramolecular domain‐domain co‐evolution of PIN auxin transporters,”
    <i>New Phytologist</i>, vol. 227, no. 5. Wiley, pp. 1406–1416, 2020.
  ista: Zhang Y, Hartinger C, Wang X, Friml J. 2020. Directional auxin fluxes in plants
    by intramolecular domain‐domain co‐evolution of PIN auxin transporters. New Phytologist.
    227(5), 1406–1416.
  mla: Zhang, Yuzhou, et al. “Directional Auxin Fluxes in Plants by Intramolecular
    Domain‐domain Co‐evolution of PIN Auxin Transporters.” <i>New Phytologist</i>,
    vol. 227, no. 5, Wiley, 2020, pp. 1406–16, doi:<a href="https://doi.org/10.1111/nph.16629">10.1111/nph.16629</a>.
  short: Y. Zhang, C. Hartinger, X. Wang, J. Friml, New Phytologist 227 (2020) 1406–1416.
corr_author: '1'
date_created: 2020-04-30T08:43:29Z
date_published: 2020-09-01T00:00:00Z
date_updated: 2025-04-14T07:45:03Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1111/nph.16629
ec_funded: 1
external_id:
  isi:
  - '000534092400001'
  pmid:
  - '32350870'
file:
- access_level: open_access
  checksum: 8e8150dbbba8cb65b72f81d1f0864b8b
  content_type: application/pdf
  creator: dernst
  date_created: 2020-11-24T12:19:38Z
  date_updated: 2020-11-24T12:19:38Z
  file_id: '8799'
  file_name: 2020_09_NewPhytologist_Zhang.pdf
  file_size: 3643395
  relation: main_file
  success: 1
file_date_updated: 2020-11-24T12:19:38Z
has_accepted_license: '1'
intvolume: '       227'
isi: 1
issue: '5'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 1406-1416
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 26538374-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03630
  name: Molecular mechanisms of endocytic cargo recognition in plants
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: New Phytologist
publication_identifier:
  eissn:
  - 1469-8137
  issn:
  - 0028-646X
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Directional auxin fluxes in plants by intramolecular domain‐domain co‐evolution
  of PIN auxin transporters
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 227
year: '2020'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '7707'
abstract:
- lang: eng
  text: The growing sample size of genome-wide association studies has facilitated
    the discovery of gene-environment interactions (GxE). Here we propose a maximum
    likelihood method to estimate the contribution of GxE to continuous traits taking
    into account all interacting environmental variables, without the need to measure
    any. Extensive simulations demonstrate that our method provides unbiased interaction
    estimates and excellent coverage. We also offer strategies to distinguish specific
    GxE from general scale effects. Applying our method to 32 traits in the UK Biobank
    reveals that while the genetic risk score (GRS) of 376 variants explains 5.2%
    of body mass index (BMI) variance, GRSxE explains an additional 1.9%. Nevertheless,
    this interaction holds for any variable with identical correlation to BMI as the
    GRS, hence may not be GRS-specific. Still, we observe that the global contribution
    of specific GRSxE to complex traits is substantial for nine obesity-related measures
    (including leg impedance and trunk fat-free mass).
article_number: '1385'
article_processing_charge: No
article_type: original
author:
- first_name: Jonathan
  full_name: Sulc, Jonathan
  last_name: Sulc
- first_name: Ninon
  full_name: Mounier, Ninon
  last_name: Mounier
- first_name: Felix
  full_name: Günther, Felix
  last_name: Günther
- first_name: Thomas
  full_name: Winkler, Thomas
  last_name: Winkler
- first_name: Andrew R.
  full_name: Wood, Andrew R.
  last_name: Wood
- first_name: Timothy M.
  full_name: Frayling, Timothy M.
  last_name: Frayling
- first_name: Iris M.
  full_name: Heid, Iris M.
  last_name: Heid
- first_name: Matthew Richard
  full_name: Robinson, Matthew Richard
  id: E5D42276-F5DA-11E9-8E24-6303E6697425
  last_name: Robinson
  orcid: 0000-0001-8982-8813
- first_name: Zoltán
  full_name: Kutalik, Zoltán
  last_name: Kutalik
citation:
  ama: Sulc J, Mounier N, Günther F, et al. Quantification of the overall contribution
    of gene-environment interaction for obesity-related traits. <i>Nature Communications</i>.
    2020;11. doi:<a href="https://doi.org/10.1038/s41467-020-15107-0">10.1038/s41467-020-15107-0</a>
  apa: Sulc, J., Mounier, N., Günther, F., Winkler, T., Wood, A. R., Frayling, T.
    M., … Kutalik, Z. (2020). Quantification of the overall contribution of gene-environment
    interaction for obesity-related traits. <i>Nature Communications</i>. Springer
    Nature. <a href="https://doi.org/10.1038/s41467-020-15107-0">https://doi.org/10.1038/s41467-020-15107-0</a>
  chicago: Sulc, Jonathan, Ninon Mounier, Felix Günther, Thomas Winkler, Andrew R.
    Wood, Timothy M. Frayling, Iris M. Heid, Matthew Richard Robinson, and Zoltán
    Kutalik. “Quantification of the Overall Contribution of Gene-Environment Interaction
    for Obesity-Related Traits.” <i>Nature Communications</i>. Springer Nature, 2020.
    <a href="https://doi.org/10.1038/s41467-020-15107-0">https://doi.org/10.1038/s41467-020-15107-0</a>.
  ieee: J. Sulc <i>et al.</i>, “Quantification of the overall contribution of gene-environment
    interaction for obesity-related traits,” <i>Nature Communications</i>, vol. 11.
    Springer Nature, 2020.
  ista: Sulc J, Mounier N, Günther F, Winkler T, Wood AR, Frayling TM, Heid IM, Robinson
    MR, Kutalik Z. 2020. Quantification of the overall contribution of gene-environment
    interaction for obesity-related traits. Nature Communications. 11, 1385.
  mla: Sulc, Jonathan, et al. “Quantification of the Overall Contribution of Gene-Environment
    Interaction for Obesity-Related Traits.” <i>Nature Communications</i>, vol. 11,
    1385, Springer Nature, 2020, doi:<a href="https://doi.org/10.1038/s41467-020-15107-0">10.1038/s41467-020-15107-0</a>.
  short: J. Sulc, N. Mounier, F. Günther, T. Winkler, A.R. Wood, T.M. Frayling, I.M.
    Heid, M.R. Robinson, Z. Kutalik, Nature Communications 11 (2020).
date_created: 2020-04-30T10:39:33Z
date_published: 2020-03-20T00:00:00Z
date_updated: 2024-10-15T12:43:32Z
day: '20'
doi: 10.1038/s41467-020-15107-0
extern: '1'
intvolume: '        11'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1038/s41467-020-15107-0
month: '03'
oa: 1
oa_version: Published Version
publication: Nature Communications
publication_identifier:
  issn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Quantification of the overall contribution of gene-environment interaction
  for obesity-related traits
type: journal_article
user_id: 0043cee0-e5fc-11ee-9736-f83bc23afbf0
volume: 11
year: '2020'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '7708'
abstract:
- lang: eng
  text: We conducted DNA methylation association analyses using Illumina 450K data
    from whole blood for an Australian amyotrophic lateral sclerosis (ALS) case–control
    cohort (782 cases and 613 controls). Analyses used mixed linear models as implemented
    in the OSCA software. We found a significantly higher proportion of neutrophils
    in cases compared to controls which replicated in an independent cohort from the
    Netherlands (1159 cases and 637 controls). The OSCA MOMENT linear mixed model
    has been shown in simulations to best account for confounders. When combined in
    a methylation profile score, the 25 most-associated probes identified by MOMENT
    significantly classified case–control status in the Netherlands sample (area under
    the curve, AUC = 0.65, CI95% = [0.62–0.68], p = 8.3 × 10−22). The maximum AUC
    achieved was 0.69 (CI95% = [0.66–0.71], p = 4.3 × 10−34) when cell-type proportion
    was included in the predictor.
article_number: '10'
article_processing_charge: No
article_type: original
author:
- first_name: Marta F.
  full_name: Nabais, Marta F.
  last_name: Nabais
- first_name: Tian
  full_name: Lin, Tian
  last_name: Lin
- first_name: Beben
  full_name: Benyamin, Beben
  last_name: Benyamin
- first_name: Kelly L.
  full_name: Williams, Kelly L.
  last_name: Williams
- first_name: Fleur C.
  full_name: Garton, Fleur C.
  last_name: Garton
- first_name: Anna A. E.
  full_name: Vinkhuyzen, Anna A. E.
  last_name: Vinkhuyzen
- first_name: Futao
  full_name: Zhang, Futao
  last_name: Zhang
- first_name: Costanza L.
  full_name: Vallerga, Costanza L.
  last_name: Vallerga
- first_name: Restuadi
  full_name: Restuadi, Restuadi
  last_name: Restuadi
- first_name: Anna
  full_name: Freydenzon, Anna
  last_name: Freydenzon
- first_name: Ramona A. J.
  full_name: Zwamborn, Ramona A. J.
  last_name: Zwamborn
- first_name: Paul J.
  full_name: Hop, Paul J.
  last_name: Hop
- first_name: Matthew Richard
  full_name: Robinson, Matthew Richard
  id: E5D42276-F5DA-11E9-8E24-6303E6697425
  last_name: Robinson
  orcid: 0000-0001-8982-8813
- first_name: Jacob
  full_name: Gratten, Jacob
  last_name: Gratten
- first_name: Peter M.
  full_name: Visscher, Peter M.
  last_name: Visscher
- first_name: Eilis
  full_name: Hannon, Eilis
  last_name: Hannon
- first_name: Jonathan
  full_name: Mill, Jonathan
  last_name: Mill
- first_name: Matthew A.
  full_name: Brown, Matthew A.
  last_name: Brown
- first_name: Nigel G.
  full_name: Laing, Nigel G.
  last_name: Laing
- first_name: Karen A.
  full_name: Mather, Karen A.
  last_name: Mather
- first_name: Perminder S.
  full_name: Sachdev, Perminder S.
  last_name: Sachdev
- first_name: Shyuan T.
  full_name: Ngo, Shyuan T.
  last_name: Ngo
- first_name: Frederik J.
  full_name: Steyn, Frederik J.
  last_name: Steyn
- first_name: Leanne
  full_name: Wallace, Leanne
  last_name: Wallace
- first_name: Anjali K.
  full_name: Henders, Anjali K.
  last_name: Henders
- first_name: Merrilee
  full_name: Needham, Merrilee
  last_name: Needham
- first_name: Jan H.
  full_name: Veldink, Jan H.
  last_name: Veldink
- first_name: Susan
  full_name: Mathers, Susan
  last_name: Mathers
- first_name: Garth
  full_name: Nicholson, Garth
  last_name: Nicholson
- first_name: Dominic B.
  full_name: Rowe, Dominic B.
  last_name: Rowe
- first_name: Robert D.
  full_name: Henderson, Robert D.
  last_name: Henderson
- first_name: Pamela A.
  full_name: McCombe, Pamela A.
  last_name: McCombe
- first_name: Roger
  full_name: Pamphlett, Roger
  last_name: Pamphlett
- first_name: Jian
  full_name: Yang, Jian
  last_name: Yang
- first_name: Ian P.
  full_name: Blair, Ian P.
  last_name: Blair
- first_name: Allan F.
  full_name: McRae, Allan F.
  last_name: McRae
- first_name: Naomi R.
  full_name: Wray, Naomi R.
  last_name: Wray
citation:
  ama: Nabais MF, Lin T, Benyamin B, et al. Significant out-of-sample classification
    from methylation profile scoring for amyotrophic lateral sclerosis. <i>npj Genomic
    Medicine</i>. 2020;5. doi:<a href="https://doi.org/10.1038/s41525-020-0118-3">10.1038/s41525-020-0118-3</a>
  apa: Nabais, M. F., Lin, T., Benyamin, B., Williams, K. L., Garton, F. C., Vinkhuyzen,
    A. A. E., … Wray, N. R. (2020). Significant out-of-sample classification from
    methylation profile scoring for amyotrophic lateral sclerosis. <i>Npj Genomic
    Medicine</i>. Springer Nature. <a href="https://doi.org/10.1038/s41525-020-0118-3">https://doi.org/10.1038/s41525-020-0118-3</a>
  chicago: Nabais, Marta F., Tian Lin, Beben Benyamin, Kelly L. Williams, Fleur C.
    Garton, Anna A. E. Vinkhuyzen, Futao Zhang, et al. “Significant Out-of-Sample
    Classification from Methylation Profile Scoring for Amyotrophic Lateral Sclerosis.”
    <i>Npj Genomic Medicine</i>. Springer Nature, 2020. <a href="https://doi.org/10.1038/s41525-020-0118-3">https://doi.org/10.1038/s41525-020-0118-3</a>.
  ieee: M. F. Nabais <i>et al.</i>, “Significant out-of-sample classification from
    methylation profile scoring for amyotrophic lateral sclerosis,” <i>npj Genomic
    Medicine</i>, vol. 5. Springer Nature, 2020.
  ista: Nabais MF, Lin T, Benyamin B, Williams KL, Garton FC, Vinkhuyzen AAE, Zhang
    F, Vallerga CL, Restuadi R, Freydenzon A, Zwamborn RAJ, Hop PJ, Robinson MR, Gratten
    J, Visscher PM, Hannon E, Mill J, Brown MA, Laing NG, Mather KA, Sachdev PS, Ngo
    ST, Steyn FJ, Wallace L, Henders AK, Needham M, Veldink JH, Mathers S, Nicholson
    G, Rowe DB, Henderson RD, McCombe PA, Pamphlett R, Yang J, Blair IP, McRae AF,
    Wray NR. 2020. Significant out-of-sample classification from methylation profile
    scoring for amyotrophic lateral sclerosis. npj Genomic Medicine. 5, 10.
  mla: Nabais, Marta F., et al. “Significant Out-of-Sample Classification from Methylation
    Profile Scoring for Amyotrophic Lateral Sclerosis.” <i>Npj Genomic Medicine</i>,
    vol. 5, 10, Springer Nature, 2020, doi:<a href="https://doi.org/10.1038/s41525-020-0118-3">10.1038/s41525-020-0118-3</a>.
  short: M.F. Nabais, T. Lin, B. Benyamin, K.L. Williams, F.C. Garton, A.A.E. Vinkhuyzen,
    F. Zhang, C.L. Vallerga, R. Restuadi, A. Freydenzon, R.A.J. Zwamborn, P.J. Hop,
    M.R. Robinson, J. Gratten, P.M. Visscher, E. Hannon, J. Mill, M.A. Brown, N.G.
    Laing, K.A. Mather, P.S. Sachdev, S.T. Ngo, F.J. Steyn, L. Wallace, A.K. Henders,
    M. Needham, J.H. Veldink, S. Mathers, G. Nicholson, D.B. Rowe, R.D. Henderson,
    P.A. McCombe, R. Pamphlett, J. Yang, I.P. Blair, A.F. McRae, N.R. Wray, Npj Genomic
    Medicine 5 (2020).
date_created: 2020-04-30T10:39:54Z
date_published: 2020-02-27T00:00:00Z
date_updated: 2024-10-15T12:41:56Z
day: '27'
doi: 10.1038/s41525-020-0118-3
extern: '1'
intvolume: '         5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1038/s41525-020-0118-3
month: '02'
oa: 1
oa_version: Published Version
publication: npj Genomic Medicine
publication_identifier:
  issn:
  - 2056-7944
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Significant out-of-sample classification from methylation profile scoring for
  amyotrophic lateral sclerosis
type: journal_article
user_id: 0043cee0-e5fc-11ee-9736-f83bc23afbf0
volume: 5
year: '2020'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '7778'
abstract:
- lang: eng
  text: Recent advances in synthetic posttranslational protein circuits are substantially
    impacting the landscape of cellular engineering and offer several advantages compared
    to traditional gene circuits. However, engineering dynamic phenomena such as oscillations
    in protein-level circuits remains an outstanding challenge. Few examples of biological
    posttranslational oscillators are known, necessitating theoretical progress to
    determine realizable oscillators. We construct mathematical models for two posttranslational
    oscillators, using few components that interact only through reversible binding
    and phosphorylation/dephosphorylation reactions. Our designed oscillators rely
    on the self-assembly of two protein species into multimeric functional enzymes
    that respectively inhibit and enhance this self-assembly. We limit our analysis
    to within experimental constraints, finding (i) significant portions of the restricted
    parameter space yielding oscillations and (ii) that oscillation periods can be
    tuned by several orders of magnitude using recent advances in computational protein
    design. Our work paves the way for the rational design and realization of protein-based
    dynamic systems.
article_number: eabc1939
article_processing_charge: No
article_type: original
author:
- first_name: Ofer
  full_name: Kimchi, Ofer
  last_name: Kimchi
- first_name: Carl Peter
  full_name: Goodrich, Carl Peter
  id: EB352CD2-F68A-11E9-89C5-A432E6697425
  last_name: Goodrich
  orcid: 0000-0002-1307-5074
- first_name: Alexis
  full_name: Courbet, Alexis
  last_name: Courbet
- first_name: Agnese I.
  full_name: Curatolo, Agnese I.
  last_name: Curatolo
- first_name: Nicholas B.
  full_name: Woodall, Nicholas B.
  last_name: Woodall
- first_name: David
  full_name: Baker, David
  last_name: Baker
- first_name: Michael P.
  full_name: Brenner, Michael P.
  last_name: Brenner
citation:
  ama: Kimchi O, Goodrich CP, Courbet A, et al. Self-assembly-based posttranslational
    protein oscillators. <i>Science Advances</i>. 2020;6(51). doi:<a href="https://doi.org/10.1126/sciadv.abc1939">10.1126/sciadv.abc1939</a>
  apa: Kimchi, O., Goodrich, C. P., Courbet, A., Curatolo, A. I., Woodall, N. B.,
    Baker, D., &#38; Brenner, M. P. (2020). Self-assembly-based posttranslational
    protein oscillators. <i>Science Advances</i>. <a href="https://doi.org/10.1126/sciadv.abc1939">https://doi.org/10.1126/sciadv.abc1939</a>
  chicago: Kimchi, Ofer, Carl Peter Goodrich, Alexis Courbet, Agnese I. Curatolo,
    Nicholas B. Woodall, David Baker, and Michael P. Brenner. “Self-Assembly-Based
    Posttranslational Protein Oscillators.” <i>Science Advances</i>, 2020. <a href="https://doi.org/10.1126/sciadv.abc1939">https://doi.org/10.1126/sciadv.abc1939</a>.
  ieee: O. Kimchi <i>et al.</i>, “Self-assembly-based posttranslational protein oscillators,”
    <i>Science Advances</i>, vol. 6, no. 51. 2020.
  ista: Kimchi O, Goodrich CP, Courbet A, Curatolo AI, Woodall NB, Baker D, Brenner
    MP. 2020. Self-assembly-based posttranslational protein oscillators. Science Advances.
    6(51), eabc1939.
  mla: Kimchi, Ofer, et al. “Self-Assembly-Based Posttranslational Protein Oscillators.”
    <i>Science Advances</i>, vol. 6, no. 51, eabc1939, 2020, doi:<a href="https://doi.org/10.1126/sciadv.abc1939">10.1126/sciadv.abc1939</a>.
  short: O. Kimchi, C.P. Goodrich, A. Courbet, A.I. Curatolo, N.B. Woodall, D. Baker,
    M.P. Brenner, Science Advances 6 (2020).
date_created: 2020-04-30T12:07:55Z
date_published: 2020-12-16T00:00:00Z
date_updated: 2024-10-15T12:55:13Z
day: '16'
ddc:
- '570'
doi: 10.1126/sciadv.abc1939
extern: '1'
file:
- access_level: open_access
  checksum: eb6d950b6a68ddc4a2fb31ec80a2a1bd
  content_type: application/pdf
  creator: dernst
  date_created: 2021-04-12T08:33:23Z
  date_updated: 2021-04-12T08:33:23Z
  file_id: '9320'
  file_name: 2020_ScienceAdv_Kimchi.pdf
  file_size: 1259758
  relation: main_file
  success: 1
file_date_updated: 2021-04-12T08:33:23Z
has_accepted_license: '1'
intvolume: '         6'
issue: '51'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
publication: Science Advances
publication_status: published
quality_controlled: '1'
status: public
title: Self-assembly-based posttranslational protein oscillators
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 0043cee0-e5fc-11ee-9736-f83bc23afbf0
volume: 6
year: '2020'
...
---
_id: '7788'
abstract:
- lang: eng
  text: Mutations in NDUFS4, which encodes an accessory subunit of mitochondrial oxidative
    phosphorylation (OXPHOS) complex I (CI), induce Leigh syndrome (LS). LS is a poorly
    understood pediatric disorder featuring brain-specific anomalies and early death.
    To study the LS pathomechanism, we here compared OXPHOS proteomes between various
    Ndufs4−/− mouse tissues. Ndufs4−/− animals displayed significantly lower CI subunit
    levels in brain/diaphragm relative to other tissues (liver/heart/kidney/skeletal
    muscle), whereas other OXPHOS subunit levels were not reduced. Absence of NDUFS4
    induced near complete absence of the NDUFA12 accessory subunit, a 50% reduction
    in other CI subunit levels, and an increase in specific CI assembly factors. Among
    the latter, NDUFAF2 was most highly increased. Regarding NDUFS4, NDUFA12 and NDUFAF2,
    identical results were obtained in Ndufs4−/− mouse embryonic fibroblasts (MEFs)
    and NDUFS4-mutated LS patient cells. Ndufs4−/− MEFs contained active CI in situ
    but blue-native-PAGE highlighted that NDUFAF2 attached to an inactive CI subcomplex
    (CI-830) and inactive assemblies of higher MW. In NDUFA12-mutated LS patient cells,
    NDUFA12 absence did not reduce NDUFS4 levels but triggered NDUFAF2 association
    to active CI. BN-PAGE revealed no such association in LS patient fibroblasts with
    mutations in other CI subunit-encoding genes where NDUFAF2 was attached to CI-830
    (NDUFS1, NDUFV1 mutation) or not detected (NDUFS7 mutation). Supported by enzymological
    and CI in silico structural analysis, we conclude that absence of NDUFS4 induces
    near complete absence of NDUFA12 but not vice versa, and that NDUFAF2 stabilizes
    active CI in Ndufs4−/− mice and LS patient cells, perhaps in concert with mitochondrial
    inner membrane lipids.
article_number: '148213'
article_processing_charge: No
article_type: original
author:
- first_name: Merel J.W.
  full_name: Adjobo-Hermans, Merel J.W.
  last_name: Adjobo-Hermans
- first_name: Ria
  full_name: De Haas, Ria
  last_name: De Haas
- first_name: Peter H.G.M.
  full_name: Willems, Peter H.G.M.
  last_name: Willems
- first_name: Aleksandra
  full_name: Wojtala, Aleksandra
  last_name: Wojtala
- first_name: Sjenet E.
  full_name: Van Emst-De Vries, Sjenet E.
  last_name: Van Emst-De Vries
- first_name: Jori A.
  full_name: Wagenaars, Jori A.
  last_name: Wagenaars
- first_name: Mariel
  full_name: Van Den Brand, Mariel
  last_name: Van Den Brand
- first_name: Richard J.
  full_name: Rodenburg, Richard J.
  last_name: Rodenburg
- first_name: Jan A.M.
  full_name: Smeitink, Jan A.M.
  last_name: Smeitink
- first_name: Leo G.
  full_name: Nijtmans, Leo G.
  last_name: Nijtmans
- first_name: Leonid A
  full_name: Sazanov, Leonid A
  id: 338D39FE-F248-11E8-B48F-1D18A9856A87
  last_name: Sazanov
  orcid: 0000-0002-0977-7989
- first_name: Mariusz R.
  full_name: Wieckowski, Mariusz R.
  last_name: Wieckowski
- first_name: Werner J.H.
  full_name: Koopman, Werner J.H.
  last_name: Koopman
citation:
  ama: 'Adjobo-Hermans MJW, De Haas R, Willems PHGM, et al. NDUFS4 deletion triggers
    loss of NDUFA12 in Ndufs4−/− mice and Leigh syndrome patients: A stabilizing role
    for NDUFAF2. <i>Biochimica et Biophysica Acta - Bioenergetics</i>. 2020;1861(8).
    doi:<a href="https://doi.org/10.1016/j.bbabio.2020.148213">10.1016/j.bbabio.2020.148213</a>'
  apa: 'Adjobo-Hermans, M. J. W., De Haas, R., Willems, P. H. G. M., Wojtala, A.,
    Van Emst-De Vries, S. E., Wagenaars, J. A., … Koopman, W. J. H. (2020). NDUFS4
    deletion triggers loss of NDUFA12 in Ndufs4−/− mice and Leigh syndrome patients:
    A stabilizing role for NDUFAF2. <i>Biochimica et Biophysica Acta - Bioenergetics</i>.
    Elsevier. <a href="https://doi.org/10.1016/j.bbabio.2020.148213">https://doi.org/10.1016/j.bbabio.2020.148213</a>'
  chicago: 'Adjobo-Hermans, Merel J.W., Ria De Haas, Peter H.G.M. Willems, Aleksandra
    Wojtala, Sjenet E. Van Emst-De Vries, Jori A. Wagenaars, Mariel Van Den Brand,
    et al. “NDUFS4 Deletion Triggers Loss of NDUFA12 in Ndufs4−/− Mice and Leigh Syndrome
    Patients: A Stabilizing Role for NDUFAF2.” <i>Biochimica et Biophysica Acta -
    Bioenergetics</i>. Elsevier, 2020. <a href="https://doi.org/10.1016/j.bbabio.2020.148213">https://doi.org/10.1016/j.bbabio.2020.148213</a>.'
  ieee: 'M. J. W. Adjobo-Hermans <i>et al.</i>, “NDUFS4 deletion triggers loss of
    NDUFA12 in Ndufs4−/− mice and Leigh syndrome patients: A stabilizing role for
    NDUFAF2,” <i>Biochimica et Biophysica Acta - Bioenergetics</i>, vol. 1861, no.
    8. Elsevier, 2020.'
  ista: 'Adjobo-Hermans MJW, De Haas R, Willems PHGM, Wojtala A, Van Emst-De Vries
    SE, Wagenaars JA, Van Den Brand M, Rodenburg RJ, Smeitink JAM, Nijtmans LG, Sazanov
    LA, Wieckowski MR, Koopman WJH. 2020. NDUFS4 deletion triggers loss of NDUFA12
    in Ndufs4−/− mice and Leigh syndrome patients: A stabilizing role for NDUFAF2.
    Biochimica et Biophysica Acta - Bioenergetics. 1861(8), 148213.'
  mla: 'Adjobo-Hermans, Merel J. W., et al. “NDUFS4 Deletion Triggers Loss of NDUFA12
    in Ndufs4−/− Mice and Leigh Syndrome Patients: A Stabilizing Role for NDUFAF2.”
    <i>Biochimica et Biophysica Acta - Bioenergetics</i>, vol. 1861, no. 8, 148213,
    Elsevier, 2020, doi:<a href="https://doi.org/10.1016/j.bbabio.2020.148213">10.1016/j.bbabio.2020.148213</a>.'
  short: M.J.W. Adjobo-Hermans, R. De Haas, P.H.G.M. Willems, A. Wojtala, S.E. Van
    Emst-De Vries, J.A. Wagenaars, M. Van Den Brand, R.J. Rodenburg, J.A.M. Smeitink,
    L.G. Nijtmans, L.A. Sazanov, M.R. Wieckowski, W.J.H. Koopman, Biochimica et Biophysica
    Acta - Bioenergetics 1861 (2020).
date_created: 2020-05-03T22:00:47Z
date_published: 2020-08-01T00:00:00Z
date_updated: 2025-07-10T11:54:47Z
day: '01'
ddc:
- '570'
department:
- _id: LeSa
doi: 10.1016/j.bbabio.2020.148213
external_id:
  isi:
  - '000540842000012'
  pmid:
  - '32335026'
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month: '08'
oa: 1
oa_version: Published Version
pmid: 1
publication: Biochimica et Biophysica Acta - Bioenergetics
publication_identifier:
  eissn:
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  issn:
  - 0005-2728
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'NDUFS4 deletion triggers loss of NDUFA12 in Ndufs4−/− mice and Leigh syndrome
  patients: A stabilizing role for NDUFAF2'
tmp:
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type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1861
year: '2020'
...
---
_id: '7789'
abstract:
- lang: eng
  text: During embryonic and postnatal development, organs and tissues grow steadily
    to achieve their final size at the end of puberty. However, little is known about
    the cellular dynamics that mediate postnatal growth. By combining in vivo clonal
    lineage tracing, proliferation kinetics, single-cell transcriptomics, andin vitro
    micro-pattern experiments, we resolved the cellular dynamics taking place during
    postnatal skin epidermis expansion. Our data revealed that harmonious growth is
    engineered by a single population of developmental progenitors presenting a fixed
    fate imbalance of self-renewing divisions with an ever-decreasing proliferation
    rate. Single-cell RNA sequencing revealed that epidermal developmental progenitors
    form a more uniform population compared with adult stem and progenitor cells.
    Finally, we found that the spatial pattern of cell division orientation is dictated
    locally by the underlying collagen fiber orientation. Our results uncover a simple
    design principle of organ growth where progenitors and differentiated cells expand
    in harmony with their surrounding tissues.
article_processing_charge: No
article_type: original
author:
- first_name: Sophie
  full_name: Dekoninck, Sophie
  last_name: Dekoninck
- first_name: Edouard B
  full_name: Hannezo, Edouard B
  id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
  last_name: Hannezo
  orcid: 0000-0001-6005-1561
- first_name: Alejandro
  full_name: Sifrim, Alejandro
  last_name: Sifrim
- first_name: Yekaterina A.
  full_name: Miroshnikova, Yekaterina A.
  last_name: Miroshnikova
- first_name: Mariaceleste
  full_name: Aragona, Mariaceleste
  last_name: Aragona
- first_name: Milan
  full_name: Malfait, Milan
  last_name: Malfait
- first_name: Souhir
  full_name: Gargouri, Souhir
  last_name: Gargouri
- first_name: Charlotte
  full_name: De Neunheuser, Charlotte
  last_name: De Neunheuser
- first_name: Christine
  full_name: Dubois, Christine
  last_name: Dubois
- first_name: Thierry
  full_name: Voet, Thierry
  last_name: Voet
- first_name: Sara A.
  full_name: Wickström, Sara A.
  last_name: Wickström
- first_name: Benjamin D.
  full_name: Simons, Benjamin D.
  last_name: Simons
- first_name: Cédric
  full_name: Blanpain, Cédric
  last_name: Blanpain
citation:
  ama: Dekoninck S, Hannezo EB, Sifrim A, et al. Defining the design principles of
    skin epidermis postnatal growth. <i>Cell</i>. 2020;181(3):604-620.e22. doi:<a
    href="https://doi.org/10.1016/j.cell.2020.03.015">10.1016/j.cell.2020.03.015</a>
  apa: Dekoninck, S., Hannezo, E. B., Sifrim, A., Miroshnikova, Y. A., Aragona, M.,
    Malfait, M., … Blanpain, C. (2020). Defining the design principles of skin epidermis
    postnatal growth. <i>Cell</i>. Elsevier. <a href="https://doi.org/10.1016/j.cell.2020.03.015">https://doi.org/10.1016/j.cell.2020.03.015</a>
  chicago: Dekoninck, Sophie, Edouard B Hannezo, Alejandro Sifrim, Yekaterina A. Miroshnikova,
    Mariaceleste Aragona, Milan Malfait, Souhir Gargouri, et al. “Defining the Design
    Principles of Skin Epidermis Postnatal Growth.” <i>Cell</i>. Elsevier, 2020. <a
    href="https://doi.org/10.1016/j.cell.2020.03.015">https://doi.org/10.1016/j.cell.2020.03.015</a>.
  ieee: S. Dekoninck <i>et al.</i>, “Defining the design principles of skin epidermis
    postnatal growth,” <i>Cell</i>, vol. 181, no. 3. Elsevier, p. 604–620.e22, 2020.
  ista: Dekoninck S, Hannezo EB, Sifrim A, Miroshnikova YA, Aragona M, Malfait M,
    Gargouri S, De Neunheuser C, Dubois C, Voet T, Wickström SA, Simons BD, Blanpain
    C. 2020. Defining the design principles of skin epidermis postnatal growth. Cell.
    181(3), 604–620.e22.
  mla: Dekoninck, Sophie, et al. “Defining the Design Principles of Skin Epidermis
    Postnatal Growth.” <i>Cell</i>, vol. 181, no. 3, Elsevier, 2020, p. 604–620.e22,
    doi:<a href="https://doi.org/10.1016/j.cell.2020.03.015">10.1016/j.cell.2020.03.015</a>.
  short: S. Dekoninck, E.B. Hannezo, A. Sifrim, Y.A. Miroshnikova, M. Aragona, M.
    Malfait, S. Gargouri, C. De Neunheuser, C. Dubois, T. Voet, S.A. Wickström, B.D.
    Simons, C. Blanpain, Cell 181 (2020) 604–620.e22.
date_created: 2020-05-03T22:00:48Z
date_published: 2020-04-30T00:00:00Z
date_updated: 2025-07-10T11:54:47Z
day: '30'
ddc:
- '570'
department:
- _id: EdHa
doi: 10.1016/j.cell.2020.03.015
external_id:
  isi:
  - '000530708400016'
  pmid:
  - '32259486'
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file_date_updated: 2020-07-14T12:48:03Z
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intvolume: '       181'
isi: 1
issue: '3'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 604-620.e22
pmid: 1
publication: Cell
publication_identifier:
  eissn:
  - 1097-4172
  issn:
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publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Defining the design principles of skin epidermis postnatal growth
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  short: CC BY-NC-ND (4.0)
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volume: 181
year: '2020'
...
---
_id: '7790'
abstract:
- lang: eng
  text: "We prove a lower bound for the free energy (per unit volume) of the two-dimensional
    Bose gas in the thermodynamic limit. We show that the free energy at density \U0001D70C
    and inverse temperature \U0001D6FD differs from the one of the noninteracting
    system by the correction term \U0001D70B\U0001D70C\U0001D70C\U0001D6FD\U0001D6FD
    . Here, is the scattering length of the interaction potential, and \U0001D6FD
    is the inverse Berezinskii–Kosterlitz–Thouless critical temperature for superfluidity.
    The result is valid in the dilute limit \U0001D70C and if \U0001D6FD\U0001D70C
    ."
article_number: e20
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Andreas
  full_name: Deuchert, Andreas
  id: 4DA65CD0-F248-11E8-B48F-1D18A9856A87
  last_name: Deuchert
  orcid: 0000-0003-3146-6746
- first_name: Simon
  full_name: Mayer, Simon
  id: 30C4630A-F248-11E8-B48F-1D18A9856A87
  last_name: Mayer
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
citation:
  ama: Deuchert A, Mayer S, Seiringer R. The free energy of the two-dimensional dilute
    Bose gas. I. Lower bound. <i>Forum of Mathematics, Sigma</i>. 2020;8. doi:<a href="https://doi.org/10.1017/fms.2020.17">10.1017/fms.2020.17</a>
  apa: Deuchert, A., Mayer, S., &#38; Seiringer, R. (2020). The free energy of the
    two-dimensional dilute Bose gas. I. Lower bound. <i>Forum of Mathematics, Sigma</i>.
    Cambridge University Press. <a href="https://doi.org/10.1017/fms.2020.17">https://doi.org/10.1017/fms.2020.17</a>
  chicago: Deuchert, Andreas, Simon Mayer, and Robert Seiringer. “The Free Energy
    of the Two-Dimensional Dilute Bose Gas. I. Lower Bound.” <i>Forum of Mathematics,
    Sigma</i>. Cambridge University Press, 2020. <a href="https://doi.org/10.1017/fms.2020.17">https://doi.org/10.1017/fms.2020.17</a>.
  ieee: A. Deuchert, S. Mayer, and R. Seiringer, “The free energy of the two-dimensional
    dilute Bose gas. I. Lower bound,” <i>Forum of Mathematics, Sigma</i>, vol. 8.
    Cambridge University Press, 2020.
  ista: Deuchert A, Mayer S, Seiringer R. 2020. The free energy of the two-dimensional
    dilute Bose gas. I. Lower bound. Forum of Mathematics, Sigma. 8, e20.
  mla: Deuchert, Andreas, et al. “The Free Energy of the Two-Dimensional Dilute Bose
    Gas. I. Lower Bound.” <i>Forum of Mathematics, Sigma</i>, vol. 8, e20, Cambridge
    University Press, 2020, doi:<a href="https://doi.org/10.1017/fms.2020.17">10.1017/fms.2020.17</a>.
  short: A. Deuchert, S. Mayer, R. Seiringer, Forum of Mathematics, Sigma 8 (2020).
corr_author: '1'
date_created: 2020-05-03T22:00:48Z
date_published: 2020-03-14T00:00:00Z
date_updated: 2026-04-03T09:30:21Z
day: '14'
ddc:
- '510'
department:
- _id: RoSe
doi: 10.1017/fms.2020.17
ec_funded: 1
external_id:
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  - '1910.03372'
  isi:
  - '000527342000001'
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month: '03'
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oa_version: Published Version
project:
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  call_identifier: H2020
  grant_number: '694227'
  name: Analysis of quantum many-body systems
publication: Forum of Mathematics, Sigma
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publisher: Cambridge University Press
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title: The free energy of the two-dimensional dilute Bose gas. I. Lower bound
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user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
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...
