---
_id: '8971'
abstract:
- lang: eng
  text: The actin-related protein (Arp)2/3 complex nucleates branched actin filament
    networks pivotal for cell migration, endocytosis and pathogen infection. Its activation
    is tightly regulated and involves complex structural rearrangements and actin
    filament binding, which are yet to be understood. Here, we report a 9.0 Å resolution
    structure of the actin filament Arp2/3 complex branch junction in cells using
    cryo-electron tomography and subtomogram averaging. This allows us to generate
    an accurate model of the active Arp2/3 complex in the branch junction and its
    interaction with actin filaments. Notably, our model reveals a previously undescribed
    set of interactions of the Arp2/3 complex with the mother filament, significantly
    different to the previous branch junction model. Our structure also indicates
    a central role for the ArpC3 subunit in stabilizing the active conformation.
acknowledged_ssus:
- _id: ScienComp
- _id: LifeSc
- _id: Bio
- _id: EM-Fac
acknowledgement: "This research was supported by the Scientific Service Units (SSUs)
  of IST Austria through resources provided by Scientific Computing (SciComp), the
  Life Science Facility (LSF), the BioImaging Facility (BIF), and the Electron Microscopy
  Facility (EMF). We also thank Dimitry Tegunov (MPI for Biophysical Chemistry) for
  helpful discussions\r\nabout the M software, and Michael Sixt (IST Austria) and
  Klemens Rottner (Technical University Braunschweig, HZI Braunschweig) for critical
  reading of the manuscript. We also thank Gregory Voth (University of Chicago) for
  providing us the MD-derived branch junction model for comparison. The authors acknowledge
  support from IST Austria and from the Austrian Science Fund (FWF): M02495 to G.D.
  and Austrian Science Fund (FWF): P33367 to F.K.M.S. "
article_number: '6437'
article_processing_charge: No
article_type: original
author:
- first_name: Florian
  full_name: Fäßler, Florian
  id: 404F5528-F248-11E8-B48F-1D18A9856A87
  last_name: Fäßler
  orcid: 0000-0001-7149-769X
- first_name: Georgi A
  full_name: Dimchev, Georgi A
  id: 38C393BE-F248-11E8-B48F-1D18A9856A87
  last_name: Dimchev
  orcid: 0000-0001-8370-6161
- first_name: Victor-Valentin
  full_name: Hodirnau, Victor-Valentin
  id: 3661B498-F248-11E8-B48F-1D18A9856A87
  last_name: Hodirnau
  orcid: 0000-0003-3904-947X
- first_name: William
  full_name: Wan, William
  last_name: Wan
- first_name: Florian KM
  full_name: Schur, Florian KM
  id: 48AD8942-F248-11E8-B48F-1D18A9856A87
  last_name: Schur
  orcid: 0000-0003-4790-8078
citation:
  ama: Fäßler F, Dimchev GA, Hodirnau V-V, Wan W, Schur FK. Cryo-electron tomography
    structure of Arp2/3 complex in cells reveals new insights into the branch junction.
    <i>Nature Communications</i>. 2020;11. doi:<a href="https://doi.org/10.1038/s41467-020-20286-x">10.1038/s41467-020-20286-x</a>
  apa: Fäßler, F., Dimchev, G. A., Hodirnau, V.-V., Wan, W., &#38; Schur, F. K. (2020).
    Cryo-electron tomography structure of Arp2/3 complex in cells reveals new insights
    into the branch junction. <i>Nature Communications</i>. Springer Nature. <a href="https://doi.org/10.1038/s41467-020-20286-x">https://doi.org/10.1038/s41467-020-20286-x</a>
  chicago: Fäßler, Florian, Georgi A Dimchev, Victor-Valentin Hodirnau, William Wan,
    and Florian KM Schur. “Cryo-Electron Tomography Structure of Arp2/3 Complex in
    Cells Reveals New Insights into the Branch Junction.” <i>Nature Communications</i>.
    Springer Nature, 2020. <a href="https://doi.org/10.1038/s41467-020-20286-x">https://doi.org/10.1038/s41467-020-20286-x</a>.
  ieee: F. Fäßler, G. A. Dimchev, V.-V. Hodirnau, W. Wan, and F. K. Schur, “Cryo-electron
    tomography structure of Arp2/3 complex in cells reveals new insights into the
    branch junction,” <i>Nature Communications</i>, vol. 11. Springer Nature, 2020.
  ista: Fäßler F, Dimchev GA, Hodirnau V-V, Wan W, Schur FK. 2020. Cryo-electron tomography
    structure of Arp2/3 complex in cells reveals new insights into the branch junction.
    Nature Communications. 11, 6437.
  mla: Fäßler, Florian, et al. “Cryo-Electron Tomography Structure of Arp2/3 Complex
    in Cells Reveals New Insights into the Branch Junction.” <i>Nature Communications</i>,
    vol. 11, 6437, Springer Nature, 2020, doi:<a href="https://doi.org/10.1038/s41467-020-20286-x">10.1038/s41467-020-20286-x</a>.
  short: F. Fäßler, G.A. Dimchev, V.-V. Hodirnau, W. Wan, F.K. Schur, Nature Communications
    11 (2020).
corr_author: '1'
date_created: 2020-12-23T08:25:45Z
date_published: 2020-12-22T00:00:00Z
date_updated: 2025-04-15T07:52:12Z
day: '22'
ddc:
- '570'
department:
- _id: FlSc
- _id: EM-Fac
doi: 10.1038/s41467-020-20286-x
external_id:
  isi:
  - '000603078000003'
file:
- access_level: open_access
  checksum: 55d43ea0061cc4027ba45e966e1db8cc
  content_type: application/pdf
  creator: dernst
  date_created: 2020-12-28T08:16:10Z
  date_updated: 2020-12-28T08:16:10Z
  file_id: '8975'
  file_name: 2020_NatureComm_Faessler.pdf
  file_size: 3958727
  relation: main_file
  success: 1
file_date_updated: 2020-12-28T08:16:10Z
has_accepted_license: '1'
intvolume: '        11'
isi: 1
keyword:
- General Biochemistry
- Genetics and Molecular Biology
- General Physics and Astronomy
- General Chemistry
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
project:
- _id: 9B954C5C-BA93-11EA-9121-9846C619BF3A
  grant_number: P33367
  name: Structure and isoform diversity of the Arp2/3 complex
- _id: 2674F658-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: M02495
  name: Protein structure and function in filopodia across scales
publication: Nature Communications
publication_identifier:
  issn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/cutting-edge-technology-reveals-structures-within-cells/
scopus_import: '1'
status: public
title: Cryo-electron tomography structure of Arp2/3 complex in cells reveals new insights
  into the branch junction
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 11
year: '2020'
...
---
_id: '8978'
abstract:
- lang: eng
  text: "Mosaic analysis with double markers (MADM) technology enables concomitant
    fluorescent cell labeling and induction of uniparental chromosome disomy (UPD)
    with single-cell resolution. In UPD, imprinted genes are either overexpressed
    2-fold or are not expressed. Here, the MADM platform is utilized to probe imprinting
    phenotypes at the transcriptional level. This protocol highlights major steps
    for the generation and isolation of projection neurons and astrocytes with MADM-induced
    UPD from mouse cerebral cortex for downstream single-cell and low-input sample
    RNA-sequencing experiments.\r\n\r\nFor complete details on the use and execution
    of this protocol, please refer to Laukoter et al. (2020b)."
acknowledged_ssus:
- _id: Bio
- _id: PreCl
acknowledgement: This research was supported by the Scientific Service Units (SSU)
  at IST Austria through resources provided by the Bioimaging (BIF) and Preclinical
  Facilities (PCF). N.A received support from the FWF Firnberg-Programm (T 1031).
  This work was also supported by IST Austria institutional funds; FWF SFB F78 to
  S.H.; NÖ Forschung und Bildung n[f+b] life science call grant (C13-002) to S.H.;
  the People Programme (Marie Curie Actions) of the European Union’s Seventh Framework
  Programme (FP7/2007-2013) under REA grant agreement no. 618444 to S.H.; and the
  European Research Council (ERC) under the European Union’s Horizon 2020 research
  and innovation programme (grant agreement no. 725780 LinPro) to S.H.
article_number: '100215'
article_processing_charge: No
article_type: original
author:
- first_name: Susanne
  full_name: Laukoter, Susanne
  id: 2D6B7A9A-F248-11E8-B48F-1D18A9856A87
  last_name: Laukoter
  orcid: 0000-0002-7903-3010
- first_name: Nicole
  full_name: Amberg, Nicole
  id: 4CD6AAC6-F248-11E8-B48F-1D18A9856A87
  last_name: Amberg
  orcid: 0000-0002-3183-8207
- first_name: Florian
  full_name: Pauler, Florian
  id: 48EA0138-F248-11E8-B48F-1D18A9856A87
  last_name: Pauler
  orcid: 0000-0002-7462-0048
- first_name: Simon
  full_name: Hippenmeyer, Simon
  id: 37B36620-F248-11E8-B48F-1D18A9856A87
  last_name: Hippenmeyer
  orcid: 0000-0003-2279-1061
citation:
  ama: Laukoter S, Amberg N, Pauler F, Hippenmeyer S. Generation and isolation of
    single cells from mouse brain with mosaic analysis with double markers-induced
    uniparental chromosome disomy. <i>STAR Protocols</i>. 2020;1(3). doi:<a href="https://doi.org/10.1016/j.xpro.2020.100215">10.1016/j.xpro.2020.100215</a>
  apa: Laukoter, S., Amberg, N., Pauler, F., &#38; Hippenmeyer, S. (2020). Generation
    and isolation of single cells from mouse brain with mosaic analysis with double
    markers-induced uniparental chromosome disomy. <i>STAR Protocols</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.xpro.2020.100215">https://doi.org/10.1016/j.xpro.2020.100215</a>
  chicago: Laukoter, Susanne, Nicole Amberg, Florian Pauler, and Simon Hippenmeyer.
    “Generation and Isolation of Single Cells from Mouse Brain with Mosaic Analysis
    with Double Markers-Induced Uniparental Chromosome Disomy.” <i>STAR Protocols</i>.
    Elsevier, 2020. <a href="https://doi.org/10.1016/j.xpro.2020.100215">https://doi.org/10.1016/j.xpro.2020.100215</a>.
  ieee: S. Laukoter, N. Amberg, F. Pauler, and S. Hippenmeyer, “Generation and isolation
    of single cells from mouse brain with mosaic analysis with double markers-induced
    uniparental chromosome disomy,” <i>STAR Protocols</i>, vol. 1, no. 3. Elsevier,
    2020.
  ista: Laukoter S, Amberg N, Pauler F, Hippenmeyer S. 2020. Generation and isolation
    of single cells from mouse brain with mosaic analysis with double markers-induced
    uniparental chromosome disomy. STAR Protocols. 1(3), 100215.
  mla: Laukoter, Susanne, et al. “Generation and Isolation of Single Cells from Mouse
    Brain with Mosaic Analysis with Double Markers-Induced Uniparental Chromosome
    Disomy.” <i>STAR Protocols</i>, vol. 1, no. 3, 100215, Elsevier, 2020, doi:<a
    href="https://doi.org/10.1016/j.xpro.2020.100215">10.1016/j.xpro.2020.100215</a>.
  short: S. Laukoter, N. Amberg, F. Pauler, S. Hippenmeyer, STAR Protocols 1 (2020).
corr_author: '1'
date_created: 2020-12-30T10:17:07Z
date_published: 2020-12-18T00:00:00Z
date_updated: 2025-04-15T08:23:06Z
day: '18'
ddc:
- '570'
department:
- _id: SiHi
doi: 10.1016/j.xpro.2020.100215
ec_funded: 1
external_id:
  pmid:
  - '33377108'
file:
- access_level: open_access
  checksum: f1e9a433e9cb0f41f7b6df6b76db1f6e
  content_type: application/pdf
  creator: dernst
  date_created: 2021-01-07T15:57:27Z
  date_updated: 2021-01-07T15:57:27Z
  file_id: '8996'
  file_name: 2020_STARProtocols_Laukoter.pdf
  file_size: 4031449
  relation: main_file
  success: 1
file_date_updated: 2021-01-07T15:57:27Z
has_accepted_license: '1'
intvolume: '         1'
issue: '3'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 268F8446-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: T01031
  name: Role of Eed in neural stem cell lineage progression
- _id: 059F6AB4-7A3F-11EA-A408-12923DDC885E
  grant_number: F7805
  name: Stem Cell Modulation in Neural Development and Regeneration/ P05-Molecular
    Mechanisms of Neural Stem Cell Lineage Progression
- _id: 25D92700-B435-11E9-9278-68D0E5697425
  grant_number: LS13-002
  name: Mapping Cell-Type Specificity of the Genomic Imprintome in the Brain
- _id: 25D61E48-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '618444'
  name: Molecular Mechanisms of Cerebral Cortex Development
- _id: 260018B0-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '725780'
  name: Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development
publication: STAR Protocols
publication_identifier:
  issn:
  - 2666-1667
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Generation and isolation of single cells from mouse brain with mosaic analysis
  with double markers-induced uniparental chromosome disomy
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1
year: '2020'
...
---
_id: '8987'
abstract:
- lang: eng
  text: "Currently several projects aim at designing and implementing protocols for
    privacy preserving automated contact tracing to help fight the current pandemic.
    Those proposal are quite similar, and in their most basic form basically propose
    an app for mobile phones which broadcasts frequently changing pseudorandom identifiers
    via (low energy) Bluetooth, and at the same time, the app stores IDs broadcast
    by phones in its proximity. Only if a user is tested positive, they upload either
    the beacons they did broadcast (which is the case in decentralized proposals as
    DP-3T, east and west coast PACT or Covid watch) or received (as in Popp-PT or
    ROBERT) during the last two weeks or so.\r\n\r\nVaudenay [eprint 2020/399] observes
    that this basic scheme (he considers the DP-3T proposal) succumbs to relay and
    even replay attacks, and proposes more complex interactive schemes which prevent
    those attacks without giving up too many privacy aspects. Unfortunately interaction
    is problematic for this application for efficiency and security reasons. The countermeasures
    that have been suggested so far are either not practical or give up on key privacy
    aspects. We propose a simple non-interactive variant of the basic protocol that\r\n(security)
    Provably prevents replay and (if location data is available) relay attacks.\r\n(privacy)
    The data of all parties (even jointly) reveals no information on the location
    or time where encounters happened.\r\n(efficiency) The broadcasted message can
    fit into 128 bits and uses only basic crypto (commitments and secret key authentication).\r\n\r\nTowards
    this end we introduce the concept of “delayed authentication”, which basically
    is a message authentication code where verification can be done in two steps,
    where the first doesn’t require the key, and the second doesn’t require the message."
article_processing_charge: No
author:
- first_name: Krzysztof Z
  full_name: Pietrzak, Krzysztof Z
  id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
  last_name: Pietrzak
  orcid: 0000-0002-9139-1654
citation:
  ama: 'Pietrzak KZ. Delayed authentication: Preventing replay and relay attacks in
    private contact tracing. In: <i>Progress in Cryptology</i>. Vol 12578. LNCS. Springer
    Nature; 2020:3-15. doi:<a href="https://doi.org/10.1007/978-3-030-65277-7_1">10.1007/978-3-030-65277-7_1</a>'
  apa: 'Pietrzak, K. Z. (2020). Delayed authentication: Preventing replay and relay
    attacks in private contact tracing. In <i>Progress in Cryptology</i> (Vol. 12578,
    pp. 3–15). Bangalore, India: Springer Nature. <a href="https://doi.org/10.1007/978-3-030-65277-7_1">https://doi.org/10.1007/978-3-030-65277-7_1</a>'
  chicago: 'Pietrzak, Krzysztof Z. “Delayed Authentication: Preventing Replay and
    Relay Attacks in Private Contact Tracing.” In <i>Progress in Cryptology</i>, 12578:3–15.
    LNCS. Springer Nature, 2020. <a href="https://doi.org/10.1007/978-3-030-65277-7_1">https://doi.org/10.1007/978-3-030-65277-7_1</a>.'
  ieee: 'K. Z. Pietrzak, “Delayed authentication: Preventing replay and relay attacks
    in private contact tracing,” in <i>Progress in Cryptology</i>, Bangalore, India,
    2020, vol. 12578, pp. 3–15.'
  ista: 'Pietrzak KZ. 2020. Delayed authentication: Preventing replay and relay attacks
    in private contact tracing. Progress in Cryptology. INDOCRYPT: International Conference
    on Cryptology in IndiaLNCS vol. 12578, 3–15.'
  mla: 'Pietrzak, Krzysztof Z. “Delayed Authentication: Preventing Replay and Relay
    Attacks in Private Contact Tracing.” <i>Progress in Cryptology</i>, vol. 12578,
    Springer Nature, 2020, pp. 3–15, doi:<a href="https://doi.org/10.1007/978-3-030-65277-7_1">10.1007/978-3-030-65277-7_1</a>.'
  short: K.Z. Pietrzak, in:, Progress in Cryptology, Springer Nature, 2020, pp. 3–15.
conference:
  end_date: 2020-12-16
  location: Bangalore, India
  name: 'INDOCRYPT: International Conference on Cryptology in India'
  start_date: 2020-12-13
date_created: 2021-01-03T23:01:23Z
date_published: 2020-12-08T00:00:00Z
date_updated: 2026-04-16T09:33:26Z
day: '08'
department:
- _id: KrPi
doi: 10.1007/978-3-030-65277-7_1
ec_funded: 1
external_id:
  isi:
  - '000927592800001'
intvolume: '     12578'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://eprint.iacr.org/2020/418
month: '12'
oa: 1
oa_version: Preprint
page: 3-15
project:
- _id: 258AA5B2-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '682815'
  name: Teaching Old Crypto New Tricks
publication: Progress in Cryptology
publication_identifier:
  eissn:
  - 1611-3349
  isbn:
  - '9783030652760'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
series_title: LNCS
status: public
title: 'Delayed authentication: Preventing replay and relay attacks in private contact
  tracing'
type: conference
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 12578
year: '2020'
...
---
_id: '9000'
abstract:
- lang: eng
  text: 'In prokaryotes, thermodynamic models of gene regulation provide a highly
    quantitative mapping from promoter sequences to gene-expression levels that is
    compatible with in vivo and in vitro biophysical measurements. Such concordance
    has not been achieved for models of enhancer function in eukaryotes. In equilibrium
    models, it is difficult to reconcile the reported short transcription factor (TF)
    residence times on the DNA with the high specificity of regulation. In nonequilibrium
    models, progress is difficult due to an explosion in the number of parameters.
    Here, we navigate this complexity by looking for minimal nonequilibrium enhancer
    models that yield desired regulatory phenotypes: low TF residence time, high specificity,
    and tunable cooperativity. We find that a single extra parameter, interpretable
    as the “linking rate,” by which bound TFs interact with Mediator components, enables
    our models to escape equilibrium bounds and access optimal regulatory phenotypes,
    while remaining consistent with the reported phenomenology and simple enough to
    be inferred from upcoming experiments. We further find that high specificity in
    nonequilibrium models is in a trade-off with gene-expression noise, predicting
    bursty dynamics—an experimentally observed hallmark of eukaryotic transcription.
    By drastically reducing the vast parameter space of nonequilibrium enhancer models
    to a much smaller subspace that optimally realizes biological function, we deliver
    a rich class of models that could be tractably inferred from data in the near
    future.'
acknowledgement: G.T. was supported by Human Frontiers Science Program Grant RGP0034/2018.
  R.G. was supported by the Austrian Academy of Sciences DOC Fellowship. R.G. thanks
  S. Avvakumov for helpful discussions.
article_processing_charge: No
article_type: original
author:
- first_name: Rok
  full_name: Grah, Rok
  id: 483E70DE-F248-11E8-B48F-1D18A9856A87
  last_name: Grah
  orcid: 0000-0003-2539-3560
- first_name: Benjamin
  full_name: Zoller, Benjamin
  last_name: Zoller
- first_name: Gašper
  full_name: Tkačik, Gašper
  id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
  last_name: Tkačik
  orcid: 0000-0002-6699-1455
citation:
  ama: Grah R, Zoller B, Tkačik G. Nonequilibrium models of optimal enhancer function.
    <i>Proceedings of the National Academy of Sciences of the United States of America</i>.
    2020;117(50):31614-31622. doi:<a href="https://doi.org/10.1073/pnas.2006731117">10.1073/pnas.2006731117</a>
  apa: Grah, R., Zoller, B., &#38; Tkačik, G. (2020). Nonequilibrium models of optimal
    enhancer function. <i>Proceedings of the National Academy of Sciences of the United
    States of America</i>. National Academy of Sciences. <a href="https://doi.org/10.1073/pnas.2006731117">https://doi.org/10.1073/pnas.2006731117</a>
  chicago: Grah, Rok, Benjamin Zoller, and Gašper Tkačik. “Nonequilibrium Models of
    Optimal Enhancer Function.” <i>Proceedings of the National Academy of Sciences
    of the United States of America</i>. National Academy of Sciences, 2020. <a href="https://doi.org/10.1073/pnas.2006731117">https://doi.org/10.1073/pnas.2006731117</a>.
  ieee: R. Grah, B. Zoller, and G. Tkačik, “Nonequilibrium models of optimal enhancer
    function,” <i>Proceedings of the National Academy of Sciences of the United States
    of America</i>, vol. 117, no. 50. National Academy of Sciences, pp. 31614–31622,
    2020.
  ista: Grah R, Zoller B, Tkačik G. 2020. Nonequilibrium models of optimal enhancer
    function. Proceedings of the National Academy of Sciences of the United States
    of America. 117(50), 31614–31622.
  mla: Grah, Rok, et al. “Nonequilibrium Models of Optimal Enhancer Function.” <i>Proceedings
    of the National Academy of Sciences of the United States of America</i>, vol.
    117, no. 50, National Academy of Sciences, 2020, pp. 31614–22, doi:<a href="https://doi.org/10.1073/pnas.2006731117">10.1073/pnas.2006731117</a>.
  short: R. Grah, B. Zoller, G. Tkačik, Proceedings of the National Academy of Sciences
    of the United States of America 117 (2020) 31614–31622.
corr_author: '1'
date_created: 2021-01-10T23:01:17Z
date_published: 2020-12-15T00:00:00Z
date_updated: 2025-05-14T10:57:50Z
day: '15'
ddc:
- '570'
department:
- _id: GaTk
doi: 10.1073/pnas.2006731117
external_id:
  isi:
  - '000600608300015'
  pmid:
  - '33268497'
file:
- access_level: open_access
  checksum: 69039cd402a571983aa6cb4815ffa863
  content_type: application/pdf
  creator: dernst
  date_created: 2021-01-11T08:37:31Z
  date_updated: 2021-01-11T08:37:31Z
  file_id: '9004'
  file_name: 2020_PNAS_Grah.pdf
  file_size: 1199247
  relation: main_file
  success: 1
file_date_updated: 2021-01-11T08:37:31Z
has_accepted_license: '1'
intvolume: '       117'
isi: 1
issue: '50'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: 31614-31622
pmid: 1
project:
- _id: 2665AAFE-B435-11E9-9278-68D0E5697425
  grant_number: RGP0034/2018
  name: Can evolution minimize spurious signaling crosstalk to reach optimal performance?
- _id: 267C84F4-B435-11E9-9278-68D0E5697425
  name: Biophysically realistic genotype-phenotype maps for regulatory networks
publication: Proceedings of the National Academy of Sciences of the United States
  of America
publication_identifier:
  eissn:
  - 1091-6490
  issn:
  - 0027-8424
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/new-compact-model-for-gene-regulation-in-higher-organisms/
scopus_import: '1'
status: public
title: Nonequilibrium models of optimal enhancer function
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 117
year: '2020'
...
---
_id: '9001'
abstract:
- lang: eng
  text: Quantum illumination is a sensing technique that employs entangled signal-idler
    beams to improve the detection efficiency of low-reflectivity objects in environments
    with large thermal noise. The advantage over classical strategies is evident at
    low signal brightness, a feature which could make the protocol an ideal prototype
    for non-invasive scanning or low-power short-range radar. Here we experimentally
    investigate the concept of quantum illumination at microwave frequencies, by generating
    entangled fields using a Josephson parametric converter which are then amplified
    to illuminate a room-temperature object at a distance of 1 meter. Starting from
    experimental data, we simulate the case of perfect idler photon number detection,
    which results in a quantum advantage compared to the relative classical benchmark.
    Our results highlight the opportunities and challenges on the way towards a first
    room-temperature application of microwave quantum circuits.
acknowledgement: "This work was supported by the Institute of Science and Technology
  Austria (IST Austria), the European Research Council under grant agreement number
  758053 (ERC StG QUNNECT) and the EU’s Horizon 2020 research and innovation programme
  under grant agreement number 862644 (FET Open QUARTET). S.B. acknowledges support
  from the Marie Skłodowska Curie\r\nfellowship number 707438 (MSC-IF SUPEREOM), DV
  acknowledge support from EU’s Horizon 2020 research and innovation programme under
  grant agreement number 732894 (FET Proactive HOT) and the Project QuaSeRT funded
  by the QuantERA ERANET Cofund in Quantum Technologies, and J.M.F from the Austrian
  Science Fund (FWF) through BeyondC (F71), a NOMIS foundation research grant, and
  the EU’s Horizon 2020 research and\r\ninnovation programme under grant agreement
  number 732894 (FET Proactive\r\nHOT)."
article_number: '9266397'
article_processing_charge: No
arxiv: 1
author:
- first_name: Shabir
  full_name: Barzanjeh, Shabir
  id: 2D25E1F6-F248-11E8-B48F-1D18A9856A87
  last_name: Barzanjeh
  orcid: 0000-0003-0415-1423
- first_name: Stefano
  full_name: Pirandola, Stefano
  last_name: Pirandola
- first_name: David
  full_name: Vitali, David
  last_name: Vitali
- first_name: Johannes M
  full_name: Fink, Johannes M
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
citation:
  ama: 'Barzanjeh S, Pirandola S, Vitali D, Fink JM. Microwave quantum illumination
    with a digital phase-conjugated receiver. In: <i>IEEE National Radar Conference
    - Proceedings</i>. Vol 2020. IEEE; 2020. doi:<a href="https://doi.org/10.1109/RadarConf2043947.2020.9266397">10.1109/RadarConf2043947.2020.9266397</a>'
  apa: 'Barzanjeh, S., Pirandola, S., Vitali, D., &#38; Fink, J. M. (2020). Microwave
    quantum illumination with a digital phase-conjugated receiver. In <i>IEEE National
    Radar Conference - Proceedings</i> (Vol. 2020). Florence, Italy: IEEE. <a href="https://doi.org/10.1109/RadarConf2043947.2020.9266397">https://doi.org/10.1109/RadarConf2043947.2020.9266397</a>'
  chicago: Barzanjeh, Shabir, Stefano Pirandola, David Vitali, and Johannes M Fink.
    “Microwave Quantum Illumination with a Digital Phase-Conjugated Receiver.” In
    <i>IEEE National Radar Conference - Proceedings</i>, Vol. 2020. IEEE, 2020. <a
    href="https://doi.org/10.1109/RadarConf2043947.2020.9266397">https://doi.org/10.1109/RadarConf2043947.2020.9266397</a>.
  ieee: S. Barzanjeh, S. Pirandola, D. Vitali, and J. M. Fink, “Microwave quantum
    illumination with a digital phase-conjugated receiver,” in <i>IEEE National Radar
    Conference - Proceedings</i>, Florence, Italy, 2020, vol. 2020, no. 9.
  ista: 'Barzanjeh S, Pirandola S, Vitali D, Fink JM. 2020. Microwave quantum illumination
    with a digital phase-conjugated receiver. IEEE National Radar Conference - Proceedings.
    RadarConf: National Conference on Radar vol. 2020, 9266397.'
  mla: Barzanjeh, Shabir, et al. “Microwave Quantum Illumination with a Digital Phase-Conjugated
    Receiver.” <i>IEEE National Radar Conference - Proceedings</i>, vol. 2020, no.
    9, 9266397, IEEE, 2020, doi:<a href="https://doi.org/10.1109/RadarConf2043947.2020.9266397">10.1109/RadarConf2043947.2020.9266397</a>.
  short: S. Barzanjeh, S. Pirandola, D. Vitali, J.M. Fink, in:, IEEE National Radar
    Conference - Proceedings, IEEE, 2020.
conference:
  end_date: 2020-09-25
  location: Florence, Italy
  name: 'RadarConf: National Conference on Radar'
  start_date: 2020-09-21
date_created: 2021-01-10T23:01:17Z
date_published: 2020-09-21T00:00:00Z
date_updated: 2026-04-15T06:42:36Z
day: '21'
department:
- _id: JoFi
doi: 10.1109/RadarConf2043947.2020.9266397
ec_funded: 1
external_id:
  arxiv:
  - '1908.03058'
  isi:
  - '000612224900089'
intvolume: '      2020'
isi: 1
issue: '9'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1908.03058
month: '09'
oa: 1
oa_version: Preprint
project:
- _id: 26336814-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '758053'
  name: A Fiber Optic Transceiver for Superconducting Qubits
- _id: 237CBA6C-32DE-11EA-91FC-C7463DDC885E
  call_identifier: H2020
  grant_number: '862644'
  name: Quantum readout techniques and technologies
- _id: 258047B6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '707438'
  name: 'Microwave-to-Optical Quantum Link: Quantum Teleportation and Quantum Illumination
    with cavity Optomechanics'
- _id: 257EB838-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '732894'
  name: Hybrid Optomechanical Technologies
publication: IEEE National Radar Conference - Proceedings
publication_identifier:
  isbn:
  - '9781728189420'
  issn:
  - 1097-5659
publication_status: published
publisher: IEEE
quality_controlled: '1'
related_material:
  record:
  - id: '7910'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: Microwave quantum illumination with a digital phase-conjugated receiver
type: conference
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 2020
year: '2020'
...
---
_id: '9011'
abstract:
- lang: eng
  text: "Distributed ledgers provide high availability and integrity, making them
    a key enabler for practical and secure computation of distributed workloads among
    mutually distrustful parties. Many practical applications also require strong
    confidentiality, however. This work enhances permissioned and permissionless blockchains
    with the ability to manage confidential data without forfeiting availability or
    decentralization. The proposed Calypso architecture addresses two orthogonal challenges
    confronting modern distributed ledgers: (a) enabling the auditable management
    of secrets and (b) protecting distributed computations against arbitrage attacks
    when their results depend on the ordering and secrecy of inputs.\r\n\r\nCalypso
    introduces on-chain secrets, a novel abstraction that enforces atomic deposition
    of an auditable trace whenever users access confidential data. Calypso provides
    user-controlled consent management that ensures revocation atomicity and accountable
    anonymity. To enable permissionless deployment, we introduce an incentive scheme
    and provide users with the option to select their preferred trustees. We evaluated
    our Calypso prototype with a confidential document-sharing application and a decentralized
    lottery. Our benchmarks show that transaction-processing latency increases linearly
    in terms of security (number of trustees) and is in the range of 0.2 to 8 seconds
    for 16 to 128 trustees."
acknowledgement: 'We thank Nicolas Gailly, Vincent Graf, Jean-Pierre Hubaux, Wouter
  Lueks, Massimo Marelli, Carmela Troncoso, Juan-Ramón Troncoso Pastoriza, Frédéric
  Pont, and Sandra Siby for their valuable feedback. This project was supported in
  part by the ETH domain under PHRT grant #2017−201, and by the AXA Research Fund,
  Byzgen, DFINITY, and the Swiss Data Science Center (SDSC).'
article_processing_charge: No
article_type: original
author:
- first_name: Eleftherios
  full_name: Kokoris Kogias, Eleftherios
  id: f5983044-d7ef-11ea-ac6d-fd1430a26d30
  last_name: Kokoris Kogias
  orcid: 0000-0002-8827-3382
- first_name: Enis Ceyhun
  full_name: Alp, Enis Ceyhun
  last_name: Alp
- first_name: Linus
  full_name: Gasser, Linus
  last_name: Gasser
- first_name: Philipp
  full_name: Jovanovic, Philipp
  last_name: Jovanovic
- first_name: Ewa
  full_name: Syta, Ewa
  last_name: Syta
- first_name: Bryan
  full_name: Ford, Bryan
  last_name: Ford
citation:
  ama: 'Kokoris Kogias E, Alp EC, Gasser L, Jovanovic P, Syta E, Ford B. CALYPSO:
    Private data management for decentralized ledgers. <i>Proceedings of the VLDB
    Endowment</i>. 2020;14(4):586-599. doi:<a href="https://doi.org/10.14778/3436905.3436917">10.14778/3436905.3436917</a>'
  apa: 'Kokoris Kogias, E., Alp, E. C., Gasser, L., Jovanovic, P., Syta, E., &#38;
    Ford, B. (2020). CALYPSO: Private data management for decentralized ledgers. <i>Proceedings
    of the VLDB Endowment</i>. Association for Computing Machinery. <a href="https://doi.org/10.14778/3436905.3436917">https://doi.org/10.14778/3436905.3436917</a>'
  chicago: 'Kokoris Kogias, Eleftherios, Enis Ceyhun Alp, Linus Gasser, Philipp Jovanovic,
    Ewa Syta, and Bryan Ford. “CALYPSO: Private Data Management for Decentralized
    Ledgers.” <i>Proceedings of the VLDB Endowment</i>. Association for Computing
    Machinery, 2020. <a href="https://doi.org/10.14778/3436905.3436917">https://doi.org/10.14778/3436905.3436917</a>.'
  ieee: 'E. Kokoris Kogias, E. C. Alp, L. Gasser, P. Jovanovic, E. Syta, and B. Ford,
    “CALYPSO: Private data management for decentralized ledgers,” <i>Proceedings of
    the VLDB Endowment</i>, vol. 14, no. 4. Association for Computing Machinery, pp.
    586–599, 2020.'
  ista: 'Kokoris Kogias E, Alp EC, Gasser L, Jovanovic P, Syta E, Ford B. 2020. CALYPSO:
    Private data management for decentralized ledgers. Proceedings of the VLDB Endowment.
    14(4), 586–599.'
  mla: 'Kokoris Kogias, Eleftherios, et al. “CALYPSO: Private Data Management for
    Decentralized Ledgers.” <i>Proceedings of the VLDB Endowment</i>, vol. 14, no.
    4, Association for Computing Machinery, 2020, pp. 586–99, doi:<a href="https://doi.org/10.14778/3436905.3436917">10.14778/3436905.3436917</a>.'
  short: E. Kokoris Kogias, E.C. Alp, L. Gasser, P. Jovanovic, E. Syta, B. Ford, Proceedings
    of the VLDB Endowment 14 (2020) 586–599.
corr_author: '1'
date_created: 2021-01-17T23:01:13Z
date_published: 2020-12-01T00:00:00Z
date_updated: 2026-06-18T19:40:17Z
day: '01'
ddc:
- '000'
department:
- _id: ElKo
doi: 10.14778/3436905.3436917
external_id:
  isi:
  - '000658495400012'
intvolume: '        14'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://dl.acm.org/doi/10.14778/3436905.3436917
month: '12'
oa: 1
oa_version: Published Version
page: 586-599
publication: Proceedings of the VLDB Endowment
publication_identifier:
  eissn:
  - 2150-8097
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'CALYPSO: Private data management for decentralized ledgers'
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2020'
...
---
_id: '9039'
abstract:
- lang: eng
  text: We give a short and self-contained proof for rates of convergence of the Allen--Cahn
    equation towards mean curvature flow, assuming that a classical (smooth) solution
    to the latter exists and starting from well-prepared initial data. Our approach
    is based on a relative entropy technique. In particular, it does not require a
    stability analysis for the linearized Allen--Cahn operator. As our analysis also
    does not rely on the comparison principle, we expect it to be applicable to more
    complex equations and systems.
acknowledgement: "This work was supported by the European Union's Horizon 2020 Research
  and Innovation\r\nProgramme under Marie Sklodowska-Curie grant agreement 665385
  and by the Deutsche\r\nForschungsgemeinschaft (DFG, German Research Foundation)
  under Germany's Excellence Strategy, EXC-2047/1--390685813."
article_processing_charge: No
article_type: original
author:
- first_name: Julian L
  full_name: Fischer, Julian L
  id: 2C12A0B0-F248-11E8-B48F-1D18A9856A87
  last_name: Fischer
  orcid: 0000-0002-0479-558X
- first_name: Tim
  full_name: Laux, Tim
  last_name: Laux
- first_name: Theresa M.
  full_name: Simon, Theresa M.
  last_name: Simon
citation:
  ama: 'Fischer JL, Laux T, Simon TM. Convergence rates of the Allen-Cahn equation
    to mean curvature flow: A short proof based on relative entropies. <i>SIAM Journal
    on Mathematical Analysis</i>. 2020;52(6):6222-6233. doi:<a href="https://doi.org/10.1137/20M1322182">10.1137/20M1322182</a>'
  apa: 'Fischer, J. L., Laux, T., &#38; Simon, T. M. (2020). Convergence rates of
    the Allen-Cahn equation to mean curvature flow: A short proof based on relative
    entropies. <i>SIAM Journal on Mathematical Analysis</i>. Society for Industrial
    and Applied Mathematics. <a href="https://doi.org/10.1137/20M1322182">https://doi.org/10.1137/20M1322182</a>'
  chicago: 'Fischer, Julian L, Tim Laux, and Theresa M. Simon. “Convergence Rates
    of the Allen-Cahn Equation to Mean Curvature Flow: A Short Proof Based on Relative
    Entropies.” <i>SIAM Journal on Mathematical Analysis</i>. Society for Industrial
    and Applied Mathematics, 2020. <a href="https://doi.org/10.1137/20M1322182">https://doi.org/10.1137/20M1322182</a>.'
  ieee: 'J. L. Fischer, T. Laux, and T. M. Simon, “Convergence rates of the Allen-Cahn
    equation to mean curvature flow: A short proof based on relative entropies,” <i>SIAM
    Journal on Mathematical Analysis</i>, vol. 52, no. 6. Society for Industrial and
    Applied Mathematics, pp. 6222–6233, 2020.'
  ista: 'Fischer JL, Laux T, Simon TM. 2020. Convergence rates of the Allen-Cahn equation
    to mean curvature flow: A short proof based on relative entropies. SIAM Journal
    on Mathematical Analysis. 52(6), 6222–6233.'
  mla: 'Fischer, Julian L., et al. “Convergence Rates of the Allen-Cahn Equation to
    Mean Curvature Flow: A Short Proof Based on Relative Entropies.” <i>SIAM Journal
    on Mathematical Analysis</i>, vol. 52, no. 6, Society for Industrial and Applied
    Mathematics, 2020, pp. 6222–33, doi:<a href="https://doi.org/10.1137/20M1322182">10.1137/20M1322182</a>.'
  short: J.L. Fischer, T. Laux, T.M. Simon, SIAM Journal on Mathematical Analysis
    52 (2020) 6222–6233.
corr_author: '1'
date_created: 2021-01-24T23:01:09Z
date_published: 2020-12-15T00:00:00Z
date_updated: 2025-07-10T12:01:32Z
day: '15'
ddc:
- '510'
department:
- _id: JuFi
doi: 10.1137/20M1322182
ec_funded: 1
external_id:
  isi:
  - '000600695200027'
file:
- access_level: open_access
  checksum: 21aa1cf4c30a86a00cae15a984819b5d
  content_type: application/pdf
  creator: dernst
  date_created: 2021-01-25T07:48:39Z
  date_updated: 2021-01-25T07:48:39Z
  file_id: '9041'
  file_name: 2020_SIAM_Fischer.pdf
  file_size: 310655
  relation: main_file
  success: 1
file_date_updated: 2021-01-25T07:48:39Z
has_accepted_license: '1'
intvolume: '        52'
isi: 1
issue: '6'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: 6222-6233
project:
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
publication: SIAM Journal on Mathematical Analysis
publication_identifier:
  eissn:
  - 1095-7154
  issn:
  - 0036-1410
publication_status: published
publisher: Society for Industrial and Applied Mathematics
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Convergence rates of the Allen-Cahn equation to mean curvature flow: A short
  proof based on relative entropies'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 52
year: '2020'
...
---
_id: '9040'
abstract:
- lang: eng
  text: Machine learning and formal methods have complimentary benefits and drawbacks.
    In this work, we address the controller-design problem with a combination of techniques
    from both fields. The use of black-box neural networks in deep reinforcement learning
    (deep RL) poses a challenge for such a combination. Instead of reasoning formally
    about the output of deep RL, which we call the wizard, we extract from it a decision-tree
    based model, which we refer to as the magic book. Using the extracted model as
    an intermediary, we are able to handle problems that are infeasible for either
    deep RL or formal methods by themselves. First, we suggest, for the first time,
    a synthesis procedure that is based on a magic book. We synthesize a stand-alone
    correct-by-design controller that enjoys the favorable performance of RL. Second,
    we incorporate a magic book in a bounded model checking (BMC) procedure. BMC allows
    us to find numerous traces of the plant under the control of the wizard, which
    a user can use to increase the trustworthiness of the wizard and direct further
    training.
acknowledgement: This research was supported in part by the Austrian Science Fund
  (FWF) under grant Z211-N23 (Wittgenstein Award).
article_processing_charge: No
author:
- first_name: Par Alizadeh
  full_name: Alamdari, Par Alizadeh
  last_name: Alamdari
- first_name: Guy
  full_name: Avni, Guy
  id: 463C8BC2-F248-11E8-B48F-1D18A9856A87
  last_name: Avni
  orcid: 0000-0001-5588-8287
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
- first_name: Anna
  full_name: Lukina, Anna
  id: CBA4D1A8-0FE8-11E9-BDE6-07BFE5697425
  last_name: Lukina
citation:
  ama: 'Alamdari PA, Avni G, Henzinger TA, Lukina A. Formal methods with a touch of
    magic. In: <i>Proceedings of the 20th Conference on Formal Methods in Computer-Aided
    Design</i>. TU Wien Academic Press; 2020:138-147. doi:<a href="https://doi.org/10.34727/2020/isbn.978-3-85448-042-6_21">10.34727/2020/isbn.978-3-85448-042-6_21</a>'
  apa: 'Alamdari, P. A., Avni, G., Henzinger, T. A., &#38; Lukina, A. (2020). Formal
    methods with a touch of magic. In <i>Proceedings of the 20th Conference on Formal
    Methods in Computer-Aided Design</i> (pp. 138–147). Online Conference: TU Wien
    Academic Press. <a href="https://doi.org/10.34727/2020/isbn.978-3-85448-042-6_21">https://doi.org/10.34727/2020/isbn.978-3-85448-042-6_21</a>'
  chicago: Alamdari, Par Alizadeh, Guy Avni, Thomas A Henzinger, and Anna Lukina.
    “Formal Methods with a Touch of Magic.” In <i>Proceedings of the 20th Conference
    on Formal Methods in Computer-Aided Design</i>, 138–47. TU Wien Academic Press,
    2020. <a href="https://doi.org/10.34727/2020/isbn.978-3-85448-042-6_21">https://doi.org/10.34727/2020/isbn.978-3-85448-042-6_21</a>.
  ieee: P. A. Alamdari, G. Avni, T. A. Henzinger, and A. Lukina, “Formal methods with
    a touch of magic,” in <i>Proceedings of the 20th Conference on Formal Methods
    in Computer-Aided Design</i>, Online Conference, 2020, pp. 138–147.
  ista: 'Alamdari PA, Avni G, Henzinger TA, Lukina A. 2020. Formal methods with a
    touch of magic. Proceedings of the 20th Conference on Formal Methods in Computer-Aided
    Design. FMCAD: Formal Methods in Computer-Aided Design, 138–147.'
  mla: Alamdari, Par Alizadeh, et al. “Formal Methods with a Touch of Magic.” <i>Proceedings
    of the 20th Conference on Formal Methods in Computer-Aided Design</i>, TU Wien
    Academic Press, 2020, pp. 138–47, doi:<a href="https://doi.org/10.34727/2020/isbn.978-3-85448-042-6_21">10.34727/2020/isbn.978-3-85448-042-6_21</a>.
  short: P.A. Alamdari, G. Avni, T.A. Henzinger, A. Lukina, in:, Proceedings of the
    20th Conference on Formal Methods in Computer-Aided Design, TU Wien Academic Press,
    2020, pp. 138–147.
conference:
  end_date: 2020-09-24
  location: Online Conference
  name: 'FMCAD: Formal Methods in Computer-Aided Design'
  start_date: 2020-09-21
date_created: 2021-01-24T23:01:10Z
date_published: 2020-09-21T00:00:00Z
date_updated: 2025-07-10T12:01:32Z
day: '21'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.34727/2020/isbn.978-3-85448-042-6_21
file:
- access_level: open_access
  checksum: d616d549a0ade78606b16f8a9540820f
  content_type: application/pdf
  creator: dernst
  date_created: 2021-02-09T09:39:02Z
  date_updated: 2021-02-09T09:39:02Z
  file_id: '9109'
  file_name: 2020_FMCAD_Alamdari.pdf
  file_size: 990999
  relation: main_file
  success: 1
file_date_updated: 2021-02-09T09:39:02Z
has_accepted_license: '1'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 138-147
project:
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z211
  name: Formal methods for the design and analysis of complex systems
publication: Proceedings of the 20th Conference on Formal Methods in Computer-Aided
  Design
publication_identifier:
  eissn:
  - 2708-7824
  isbn:
  - '9783854480426'
publication_status: published
publisher: TU Wien Academic Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Formal methods with a touch of magic
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '9054'
abstract:
- lang: eng
  text: 'The fundamental and practical importance of particle stabilization has motivated
    various characterization methods for studying polymer brushes on particle surfaces.
    In this work, we show how one can perform sensitive measurements of neutral polymer
    coating on colloidal particles using a commercial zetameter and salt solutions.
    By systematically varying the Debye length, we study the mobility of the polymer-coated
    particles in an applied electric field and show that the electrophoretic mobility
    of polymer-coated particles normalized by the mobility of non-coated particles
    is entirely controlled by the polymer brush and independent of the native surface
    charge, here controlled with pH, or the surface–ion interaction. Our result is
    rationalized with a simple hydrodynamic model, allowing for the estimation of
    characteristics of the polymer coating: the brush length L, and the Brinkman length
    ξ, determined by its resistance to flows. We demonstrate that the Debye layer
    provides a convenient and faithful probe to the characterization of polymer coatings
    on particles. Because the method simply relies on a conventional zetameter, it
    is widely accessible and offers a practical tool to rapidly probe neutral polymer
    brushes, an asset in the development and utilization of polymer-coated colloidal
    particles.'
article_processing_charge: No
article_type: original
author:
- first_name: Mena
  full_name: Youssef, Mena
  last_name: Youssef
- first_name: Alexandre
  full_name: Morin, Alexandre
  last_name: Morin
- first_name: Antoine
  full_name: Aubret, Antoine
  last_name: Aubret
- first_name: Stefano
  full_name: Sacanna, Stefano
  last_name: Sacanna
- first_name: Jérémie A
  full_name: Palacci, Jérémie A
  id: 8fb92548-2b22-11eb-b7c1-a3f0d08d7c7d
  last_name: Palacci
  orcid: 0000-0002-7253-9465
citation:
  ama: Youssef M, Morin A, Aubret A, Sacanna S, Palacci JA. Rapid characterization
    of neutral polymer brush with a conventional zetameter and a variable pinch of
    salt. <i>Soft Matter</i>. 2020;16(17):4274-4282. doi:<a href="https://doi.org/10.1039/c9sm01850f">10.1039/c9sm01850f</a>
  apa: Youssef, M., Morin, A., Aubret, A., Sacanna, S., &#38; Palacci, J. A. (2020).
    Rapid characterization of neutral polymer brush with a conventional zetameter
    and a variable pinch of salt. <i>Soft Matter</i>. Royal Society of Chemistry .
    <a href="https://doi.org/10.1039/c9sm01850f">https://doi.org/10.1039/c9sm01850f</a>
  chicago: Youssef, Mena, Alexandre Morin, Antoine Aubret, Stefano Sacanna, and Jérémie
    A Palacci. “Rapid Characterization of Neutral Polymer Brush with a Conventional
    Zetameter and a Variable Pinch of Salt.” <i>Soft Matter</i>. Royal Society of
    Chemistry , 2020. <a href="https://doi.org/10.1039/c9sm01850f">https://doi.org/10.1039/c9sm01850f</a>.
  ieee: M. Youssef, A. Morin, A. Aubret, S. Sacanna, and J. A. Palacci, “Rapid characterization
    of neutral polymer brush with a conventional zetameter and a variable pinch of
    salt,” <i>Soft Matter</i>, vol. 16, no. 17. Royal Society of Chemistry , pp. 4274–4282,
    2020.
  ista: Youssef M, Morin A, Aubret A, Sacanna S, Palacci JA. 2020. Rapid characterization
    of neutral polymer brush with a conventional zetameter and a variable pinch of
    salt. Soft Matter. 16(17), 4274–4282.
  mla: Youssef, Mena, et al. “Rapid Characterization of Neutral Polymer Brush with
    a Conventional Zetameter and a Variable Pinch of Salt.” <i>Soft Matter</i>, vol.
    16, no. 17, Royal Society of Chemistry , 2020, pp. 4274–82, doi:<a href="https://doi.org/10.1039/c9sm01850f">10.1039/c9sm01850f</a>.
  short: M. Youssef, A. Morin, A. Aubret, S. Sacanna, J.A. Palacci, Soft Matter 16
    (2020) 4274–4282.
date_created: 2021-02-01T13:45:11Z
date_published: 2020-05-07T00:00:00Z
date_updated: 2023-02-23T13:47:45Z
day: '07'
doi: 10.1039/c9sm01850f
extern: '1'
external_id:
  pmid:
  - '32307507'
intvolume: '        16'
issue: '17'
keyword:
- General Chemistry
- Condensed Matter Physics
language:
- iso: eng
month: '05'
oa_version: None
page: 4274-4282
pmid: 1
publication: Soft Matter
publication_identifier:
  eissn:
  - 1744-6848
  issn:
  - 1744-683X
publication_status: published
publisher: 'Royal Society of Chemistry '
quality_controlled: '1'
scopus_import: '1'
status: public
title: Rapid characterization of neutral polymer brush with a conventional zetameter
  and a variable pinch of salt
type: journal_article
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 16
year: '2020'
...
---
_id: '9059'
abstract:
- lang: eng
  text: 'From rock salt to nanoparticle superlattices, complex structure can emerge
    from simple building blocks that attract each other through Coulombic forces1-4.
    On the micrometre scale, however, colloids in water defy the intuitively simple
    idea of forming crystals from oppositely charged partners, instead forming non-equilibrium
    structures such as clusters and gels5-7. Although various systems have been engineered
    to grow binary crystals8-11, native surface charge in aqueous conditions has not
    been used to assemble crystalline materials. Here we form ionic colloidal crystals
    in water through an approach that we refer to as polymer-attenuated Coulombic
    self-assembly. The key to crystallization is the use of a neutral polymer to keep
    particles separated by well defined distances, allowing us to tune the attractive
    overlap of electrical double layers, directing particles to disperse, crystallize
    or become permanently fixed on demand. The nucleation and growth of macroscopic
    single crystals is demonstrated by using the Debye screening length to fine-tune
    assembly. Using a variety of colloidal particles and commercial polymers, ionic
    colloidal crystals isostructural to caesium chloride, sodium chloride, aluminium
    diboride and K4C60 are selected according to particle size ratios. Once fixed
    by simply diluting out solution salts, crystals are pulled out of the water for
    further manipulation, demonstrating an accurate translation from solution-phase
    assembly to dried solid structures. In contrast to other assembly approaches,
    in which particles must be carefully engineered to encode binding information12-18,
    polymer-attenuated Coulombic self-assembly enables conventional colloids to be
    used as model colloidal ions, primed for crystallization. '
article_processing_charge: No
article_type: original
author:
- first_name: Theodore
  full_name: Hueckel, Theodore
  last_name: Hueckel
- first_name: Glen M.
  full_name: Hocky, Glen M.
  last_name: Hocky
- first_name: Jérémie A
  full_name: Palacci, Jérémie A
  id: 8fb92548-2b22-11eb-b7c1-a3f0d08d7c7d
  last_name: Palacci
  orcid: 0000-0002-7253-9465
- first_name: Stefano
  full_name: Sacanna, Stefano
  last_name: Sacanna
citation:
  ama: Hueckel T, Hocky GM, Palacci JA, Sacanna S. Ionic solids from common colloids.
    <i>Nature</i>. 2020;580(7804):487-490. doi:<a href="https://doi.org/10.1038/s41586-020-2205-0">10.1038/s41586-020-2205-0</a>
  apa: Hueckel, T., Hocky, G. M., Palacci, J. A., &#38; Sacanna, S. (2020). Ionic
    solids from common colloids. <i>Nature</i>. Springer Nature. <a href="https://doi.org/10.1038/s41586-020-2205-0">https://doi.org/10.1038/s41586-020-2205-0</a>
  chicago: Hueckel, Theodore, Glen M. Hocky, Jérémie A Palacci, and Stefano Sacanna.
    “Ionic Solids from Common Colloids.” <i>Nature</i>. Springer Nature, 2020. <a
    href="https://doi.org/10.1038/s41586-020-2205-0">https://doi.org/10.1038/s41586-020-2205-0</a>.
  ieee: T. Hueckel, G. M. Hocky, J. A. Palacci, and S. Sacanna, “Ionic solids from
    common colloids,” <i>Nature</i>, vol. 580, no. 7804. Springer Nature, pp. 487–490,
    2020.
  ista: Hueckel T, Hocky GM, Palacci JA, Sacanna S. 2020. Ionic solids from common
    colloids. Nature. 580(7804), 487–490.
  mla: Hueckel, Theodore, et al. “Ionic Solids from Common Colloids.” <i>Nature</i>,
    vol. 580, no. 7804, Springer Nature, 2020, pp. 487–90, doi:<a href="https://doi.org/10.1038/s41586-020-2205-0">10.1038/s41586-020-2205-0</a>.
  short: T. Hueckel, G.M. Hocky, J.A. Palacci, S. Sacanna, Nature 580 (2020) 487–490.
date_created: 2021-02-02T13:30:50Z
date_published: 2020-04-23T00:00:00Z
date_updated: 2023-02-23T13:47:55Z
day: '23'
doi: 10.1038/s41586-020-2205-0
extern: '1'
external_id:
  pmid:
  - '32322078'
intvolume: '       580'
issue: '7804'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '04'
oa_version: None
page: 487-490
pmid: 1
publication: Nature
publication_identifier:
  eissn:
  - 1476-4687
  issn:
  - 0028-0836
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Ionic solids from common colloids
type: journal_article
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 580
year: '2020'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '9067'
abstract:
- lang: eng
  text: Gadolinium silicide (Gd5Si4) nanoparticles are an interesting class of materials
    due to their high magnetization, low Curie temperature, low toxicity in biological
    environments and their multifunctional properties. We report the magnetic and
    magnetothermal properties of gadolinium silicide (Gd5Si4) nanoparticles prepared
    by surfactant-assisted ball milling of arc melted bulk ingots of the compound.
    Using different milling times and speeds, a wide range of crystallite sizes (13–43
    nm) could be produced and a reduction in Curie temperature (TC) from 340 K to
    317 K was achieved, making these nanoparticles suitable for self-controlled magnetic
    hyperthermia applications. The magnetothermal effect was measured in applied AC
    magnetic fields of amplitude 164–239 Oe and frequencies 163–519 kHz. All particles
    showed magnetic heating with a strong dependence of the specific absorption rate
    (SAR) on the average crystallite size. The highest SAR of 3.7 W g−1 was measured
    for 43 nm sized nanoparticles of Gd5Si4. The high SAR and low TC, (within the
    therapeutic range for magnetothermal therapy) makes the Gd5Si4 behave like self-regulating
    heat switches that would be suitable for self-controlled magnetic hyperthermia
    applications after biocompatibility and cytotoxicity tests.
article_processing_charge: No
article_type: original
author:
- first_name: Muhammad
  full_name: Nauman, Muhammad
  id: 32c21954-2022-11eb-9d5f-af9f93c24e71
  last_name: Nauman
  orcid: 0000-0002-2111-4846
- first_name: Muhammad Hisham
  full_name: Alnasir, Muhammad Hisham
  last_name: Alnasir
- first_name: Muhammad Asif
  full_name: Hamayun, Muhammad Asif
  last_name: Hamayun
- first_name: YiXu
  full_name: Wang, YiXu
  last_name: Wang
- first_name: Michael
  full_name: Shatruk, Michael
  last_name: Shatruk
- first_name: Sadia
  full_name: Manzoor, Sadia
  last_name: Manzoor
citation:
  ama: Nauman M, Alnasir MH, Hamayun MA, Wang Y, Shatruk M, Manzoor S. Size-dependent
    magnetic and magnetothermal properties of gadolinium silicide nanoparticles. <i>RSC
    Advances</i>. 2020;10(47):28383-28389. doi:<a href="https://doi.org/10.1039/d0ra05394e">10.1039/d0ra05394e</a>
  apa: Nauman, M., Alnasir, M. H., Hamayun, M. A., Wang, Y., Shatruk, M., &#38; Manzoor,
    S. (2020). Size-dependent magnetic and magnetothermal properties of gadolinium
    silicide nanoparticles. <i>RSC Advances</i>. Royal Society of Chemistry. <a href="https://doi.org/10.1039/d0ra05394e">https://doi.org/10.1039/d0ra05394e</a>
  chicago: Nauman, Muhammad, Muhammad Hisham Alnasir, Muhammad Asif Hamayun, YiXu
    Wang, Michael Shatruk, and Sadia Manzoor. “Size-Dependent Magnetic and Magnetothermal
    Properties of Gadolinium Silicide Nanoparticles.” <i>RSC Advances</i>. Royal Society
    of Chemistry, 2020. <a href="https://doi.org/10.1039/d0ra05394e">https://doi.org/10.1039/d0ra05394e</a>.
  ieee: M. Nauman, M. H. Alnasir, M. A. Hamayun, Y. Wang, M. Shatruk, and S. Manzoor,
    “Size-dependent magnetic and magnetothermal properties of gadolinium silicide
    nanoparticles,” <i>RSC Advances</i>, vol. 10, no. 47. Royal Society of Chemistry,
    pp. 28383–28389, 2020.
  ista: Nauman M, Alnasir MH, Hamayun MA, Wang Y, Shatruk M, Manzoor S. 2020. Size-dependent
    magnetic and magnetothermal properties of gadolinium silicide nanoparticles. RSC
    Advances. 10(47), 28383–28389.
  mla: Nauman, Muhammad, et al. “Size-Dependent Magnetic and Magnetothermal Properties
    of Gadolinium Silicide Nanoparticles.” <i>RSC Advances</i>, vol. 10, no. 47, Royal
    Society of Chemistry, 2020, pp. 28383–89, doi:<a href="https://doi.org/10.1039/d0ra05394e">10.1039/d0ra05394e</a>.
  short: M. Nauman, M.H. Alnasir, M.A. Hamayun, Y. Wang, M. Shatruk, S. Manzoor, RSC
    Advances 10 (2020) 28383–28389.
date_created: 2021-02-02T15:51:23Z
date_published: 2020-07-29T00:00:00Z
date_updated: 2024-10-15T13:44:01Z
day: '29'
doi: 10.1039/d0ra05394e
extern: '1'
intvolume: '        10'
issue: '47'
keyword:
- General Chemistry
- General Chemical Engineering
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1039/d0ra05394e
month: '07'
oa: 1
oa_version: Published Version
page: 28383-28389
publication: RSC Advances
publication_identifier:
  issn:
  - 2046-2069
publication_status: published
publisher: Royal Society of Chemistry
quality_controlled: '1'
status: public
title: Size-dependent magnetic and magnetothermal properties of gadolinium silicide
  nanoparticles
type: journal_article
user_id: 0043cee0-e5fc-11ee-9736-f83bc23afbf0
volume: 10
year: '2020'
...
---
_id: '9069'
abstract:
- lang: eng
  text: In the quest for alternate and efficient electrode materials, ternary metal
    electrocatalysts (TMEs), part of the perovskite family, were synthesized and tested
    for methanol electro-oxidation in alkaline media. La0.5Ca0.5MO3 (M = Ni, Co, or
    Mn) was synthesized via sol-gel method. X-ray diffraction analysis revealed that
    the perovskite crystal structure possesses characteristic sharp and crystalline
    peaks for all synthesized ternary electrocatalysts. The average particle size
    calculated using Debye–Scherrer equation was in the order of La0.5Ca0.5NiO3 (LCNO)
    > La0.5Ca0.5CoO3 (LCCO)> La0.5Ca0.5MnO3 (LCMO). The elemental composition of as
    prepared sample, LCCO was investigated via x-ray fluorescence spectroscopy. The
    qualitative and quantitative analysis revealed the presence of La, Ca and Co in
    parent crystal structure with percentage compositions of 9.0, 3.12 and 87.82%
    respectively. The particle size distribution was homogenous, as determined by
    scanning electron and transmission electron microscopes. The electrocatalytic
    activity of the synthesized ternary electrocatalysts was studied electrochemically
    by cyclic voltammetry. The calculated diffusion coefficient values showed that
    electrode surface of LCNO and LCCO have limited efficiency for diffusion related
    phenomenon. The heterogeneous rate constants inferred better electrode kinetics
    of LCCO and LCNO which exhibited good electrocatalytic behavior; sharp anodic
    peaks were observed in the potential range of +0.3 to 0.6 V and +0.6 to 0.8 V,
    respectively. Methanol electro-oxidation was found minimal in case of LCMO sample.
    We have observed that Co substitution at B-site of perovskite electrode materials
    attains better electrochemical properties, thus in relation with reported literature.
article_number: 1250g6
article_processing_charge: No
article_type: original
author:
- first_name: Tayyaba
  full_name: Hussain, Tayyaba
  last_name: Hussain
- first_name: Muhammad
  full_name: Nauman, Muhammad
  id: 32c21954-2022-11eb-9d5f-af9f93c24e71
  last_name: Nauman
  orcid: 0000-0002-2111-4846
- first_name: Sana
  full_name: Sabahat, Sana
  last_name: Sabahat
- first_name: Saira
  full_name: Arif, Saira
  last_name: Arif
citation:
  ama: Hussain T, Nauman M, Sabahat S, Arif S. Synthesis of ternary electrocatalysts
    for exploration of methanol electro-oxidation in alkaline media. <i>Materials
    Research Express</i>. 2020;6(12). doi:<a href="https://doi.org/10.1088/2053-1591/ab6886">10.1088/2053-1591/ab6886</a>
  apa: Hussain, T., Nauman, M., Sabahat, S., &#38; Arif, S. (2020). Synthesis of ternary
    electrocatalysts for exploration of methanol electro-oxidation in alkaline media.
    <i>Materials Research Express</i>. IOP Publishing. <a href="https://doi.org/10.1088/2053-1591/ab6886">https://doi.org/10.1088/2053-1591/ab6886</a>
  chicago: Hussain, Tayyaba, Muhammad Nauman, Sana Sabahat, and Saira Arif. “Synthesis
    of Ternary Electrocatalysts for Exploration of Methanol Electro-Oxidation in Alkaline
    Media.” <i>Materials Research Express</i>. IOP Publishing, 2020. <a href="https://doi.org/10.1088/2053-1591/ab6886">https://doi.org/10.1088/2053-1591/ab6886</a>.
  ieee: T. Hussain, M. Nauman, S. Sabahat, and S. Arif, “Synthesis of ternary electrocatalysts
    for exploration of methanol electro-oxidation in alkaline media,” <i>Materials
    Research Express</i>, vol. 6, no. 12. IOP Publishing, 2020.
  ista: Hussain T, Nauman M, Sabahat S, Arif S. 2020. Synthesis of ternary electrocatalysts
    for exploration of methanol electro-oxidation in alkaline media. Materials Research
    Express. 6(12), 1250g6.
  mla: Hussain, Tayyaba, et al. “Synthesis of Ternary Electrocatalysts for Exploration
    of Methanol Electro-Oxidation in Alkaline Media.” <i>Materials Research Express</i>,
    vol. 6, no. 12, 1250g6, IOP Publishing, 2020, doi:<a href="https://doi.org/10.1088/2053-1591/ab6886">10.1088/2053-1591/ab6886</a>.
  short: T. Hussain, M. Nauman, S. Sabahat, S. Arif, Materials Research Express 6
    (2020).
date_created: 2021-02-02T15:53:57Z
date_published: 2020-01-15T00:00:00Z
date_updated: 2021-02-04T07:21:35Z
day: '15'
doi: 10.1088/2053-1591/ab6886
extern: '1'
intvolume: '         6'
issue: '12'
keyword:
- Electronic
- Optical and Magnetic Materials
- Surfaces
- Coatings and Films
- Polymers and Plastics
- Metals and Alloys
- Biomaterials
language:
- iso: eng
month: '01'
oa_version: None
publication: Materials Research Express
publication_identifier:
  issn:
  - 2053-1591
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
status: public
title: Synthesis of ternary electrocatalysts for exploration of methanol electro-oxidation
  in alkaline media
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6
year: '2020'
...
---
_id: '9096'
article_processing_charge: No
author:
- first_name: Paul
  full_name: Schmid-Hempel, Paul
  last_name: Schmid-Hempel
- first_name: Sylvia M
  full_name: Cremer, Sylvia M
  id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
  last_name: Cremer
  orcid: 0000-0002-2193-3868
citation:
  ama: 'Schmid-Hempel P, Cremer S. Parasites and Pathogens. In: Starr C, ed. <i>Encyclopedia
    of Social Insects</i>. Cham: Springer Nature; 2020. doi:<a href="https://doi.org/10.1007/978-3-319-90306-4_94-1">10.1007/978-3-319-90306-4_94-1</a>'
  apa: 'Schmid-Hempel, P., &#38; Cremer, S. (2020). Parasites and Pathogens. In C.
    Starr (Ed.), <i>Encyclopedia of Social Insects</i>. Cham: Springer Nature. <a
    href="https://doi.org/10.1007/978-3-319-90306-4_94-1">https://doi.org/10.1007/978-3-319-90306-4_94-1</a>'
  chicago: 'Schmid-Hempel, Paul, and Sylvia Cremer. “Parasites and Pathogens.” In
    <i>Encyclopedia of Social Insects</i>, edited by C Starr. Cham: Springer Nature,
    2020. <a href="https://doi.org/10.1007/978-3-319-90306-4_94-1">https://doi.org/10.1007/978-3-319-90306-4_94-1</a>.'
  ieee: 'P. Schmid-Hempel and S. Cremer, “Parasites and Pathogens,” in <i>Encyclopedia
    of Social Insects</i>, C. Starr, Ed. Cham: Springer Nature, 2020.'
  ista: 'Schmid-Hempel P, Cremer S. 2020.Parasites and Pathogens. In: Encyclopedia
    of Social Insects. .'
  mla: Schmid-Hempel, Paul, and Sylvia Cremer. “Parasites and Pathogens.” <i>Encyclopedia
    of Social Insects</i>, edited by C Starr, Springer Nature, 2020, doi:<a href="https://doi.org/10.1007/978-3-319-90306-4_94-1">10.1007/978-3-319-90306-4_94-1</a>.
  short: P. Schmid-Hempel, S. Cremer, in:, C. Starr (Ed.), Encyclopedia of Social
    Insects, Springer Nature, Cham, 2020.
date_created: 2021-02-05T12:15:18Z
date_published: 2020-02-22T00:00:00Z
date_updated: 2021-02-05T12:19:21Z
day: '22'
department:
- _id: SyCr
doi: 10.1007/978-3-319-90306-4_94-1
editor:
- first_name: C
  full_name: Starr, C
  last_name: Starr
language:
- iso: eng
month: '02'
oa_version: None
place: Cham
publication: Encyclopedia of Social Insects
publication_identifier:
  isbn:
  - '9783319903064'
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Parasites and Pathogens
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '9103'
abstract:
- lang: eng
  text: 'We introduce LRT-NG, a set of techniques and an associated toolset that computes
    a reachtube (an over-approximation of the set of reachable states over a given
    time horizon) of a nonlinear dynamical system. LRT-NG significantly advances the
    state-of-the-art Langrangian Reachability and its associated tool LRT. From a
    theoretical perspective, LRT-NG is superior to LRT in three ways. First, it uses
    for the first time an analytically computed metric for the propagated ball which
    is proven to minimize the ball’s volume. We emphasize that the metric computation
    is the centerpiece of all bloating-based techniques. Secondly, it computes the
    next reachset as the intersection of two balls: one based on the Cartesian metric
    and the other on the new metric. While the two metrics were previously considered
    opposing approaches, their joint use considerably tightens the reachtubes. Thirdly,
    it avoids the "wrapping effect" associated with the validated integration of the
    center of the reachset, by optimally absorbing the interval approximation in the
    radius of the next ball. From a tool-development perspective, LRT-NG is superior
    to LRT in two ways. First, it is a standalone tool that no longer relies on CAPD.
    This required the implementation of the Lohner method and a Runge-Kutta time-propagation
    method. Secondly, it has an improved interface, allowing the input model and initial
    conditions to be provided as external input files. Our experiments on a comprehensive
    set of benchmarks, including two Neural ODEs, demonstrates LRT-NG’s superior performance
    compared to LRT, CAPD, and Flow*.'
acknowledgement: "The authors would like to thank Ramin Hasani and Guillaume Berger
  for intellectual discussions about the research which lead to the generation of
  new ideas. ML was supported in part by the Austrian Science Fund (FWF) under grant
  Z211-N23 (Wittgenstein Award). Smolka’s research was supported by NSF grants CPS-1446832
  and CCF-1918225. Gruenbacher is funded by FWF project W1255-N23. JC was partially
  supported by NAWA Polish Returns grant\r\nPPN/PPO/2018/1/00029.\r\n"
article_processing_charge: No
arxiv: 1
author:
- first_name: Sophie
  full_name: Gruenbacher, Sophie
  last_name: Gruenbacher
- first_name: Jacek
  full_name: Cyranka, Jacek
  last_name: Cyranka
- first_name: Mathias
  full_name: Lechner, Mathias
  id: 3DC22916-F248-11E8-B48F-1D18A9856A87
  last_name: Lechner
- first_name: Md Ariful
  full_name: Islam, Md Ariful
  last_name: Islam
- first_name: Scott A.
  full_name: Smolka, Scott A.
  last_name: Smolka
- first_name: Radu
  full_name: Grosu, Radu
  last_name: Grosu
citation:
  ama: 'Gruenbacher S, Cyranka J, Lechner M, Islam MA, Smolka SA, Grosu R. Lagrangian
    reachtubes: The next generation. In: <i>Proceedings of the 59th IEEE Conference
    on Decision and Control</i>. Vol 2020. IEEE; 2020:1556-1563. doi:<a href="https://doi.org/10.1109/CDC42340.2020.9304042">10.1109/CDC42340.2020.9304042</a>'
  apa: 'Gruenbacher, S., Cyranka, J., Lechner, M., Islam, M. A., Smolka, S. A., &#38;
    Grosu, R. (2020). Lagrangian reachtubes: The next generation. In <i>Proceedings
    of the 59th IEEE Conference on Decision and Control</i> (Vol. 2020, pp. 1556–1563).
    Jeju Islang, Korea (South): IEEE. <a href="https://doi.org/10.1109/CDC42340.2020.9304042">https://doi.org/10.1109/CDC42340.2020.9304042</a>'
  chicago: 'Gruenbacher, Sophie, Jacek Cyranka, Mathias Lechner, Md Ariful Islam,
    Scott A. Smolka, and Radu Grosu. “Lagrangian Reachtubes: The next Generation.”
    In <i>Proceedings of the 59th IEEE Conference on Decision and Control</i>, 2020:1556–63.
    IEEE, 2020. <a href="https://doi.org/10.1109/CDC42340.2020.9304042">https://doi.org/10.1109/CDC42340.2020.9304042</a>.'
  ieee: 'S. Gruenbacher, J. Cyranka, M. Lechner, M. A. Islam, S. A. Smolka, and R.
    Grosu, “Lagrangian reachtubes: The next generation,” in <i>Proceedings of the
    59th IEEE Conference on Decision and Control</i>, Jeju Islang, Korea (South),
    2020, vol. 2020, pp. 1556–1563.'
  ista: 'Gruenbacher S, Cyranka J, Lechner M, Islam MA, Smolka SA, Grosu R. 2020.
    Lagrangian reachtubes: The next generation. Proceedings of the 59th IEEE Conference
    on Decision and Control. CDC: Conference on Decision and Control vol. 2020, 1556–1563.'
  mla: 'Gruenbacher, Sophie, et al. “Lagrangian Reachtubes: The next Generation.”
    <i>Proceedings of the 59th IEEE Conference on Decision and Control</i>, vol. 2020,
    IEEE, 2020, pp. 1556–63, doi:<a href="https://doi.org/10.1109/CDC42340.2020.9304042">10.1109/CDC42340.2020.9304042</a>.'
  short: S. Gruenbacher, J. Cyranka, M. Lechner, M.A. Islam, S.A. Smolka, R. Grosu,
    in:, Proceedings of the 59th IEEE Conference on Decision and Control, IEEE, 2020,
    pp. 1556–1563.
conference:
  end_date: 2020-12-18
  location: Jeju Islang, Korea (South)
  name: 'CDC: Conference on Decision and Control'
  start_date: 2020-12-14
date_created: 2021-02-07T23:01:14Z
date_published: 2020-12-14T00:00:00Z
date_updated: 2026-04-16T09:34:59Z
day: '14'
department:
- _id: ToHe
doi: 10.1109/CDC42340.2020.9304042
external_id:
  arxiv:
  - '2012.07458'
intvolume: '      2020'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2012.07458
month: '12'
oa: 1
oa_version: Preprint
page: 1556-1563
project:
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z211
  name: Formal methods for the design and analysis of complex systems
publication: Proceedings of the 59th IEEE Conference on Decision and Control
publication_identifier:
  isbn:
  - '9781728174471'
  issn:
  - 0743-1546
publication_status: published
publisher: IEEE
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Lagrangian reachtubes: The next generation'
type: conference
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 2020
year: '2020'
...
---
_id: '9104'
abstract:
- lang: eng
  text: We consider the free additive convolution of two probability measures μ and
    ν on the real line and show that μ ⊞ v is supported on a single interval if μ
    and ν each has single interval support. Moreover, the density of μ ⊞ ν is proven
    to vanish as a square root near the edges of its support if both μ and ν have
    power law behavior with exponents between −1 and 1 near their edges. In particular,
    these results show the ubiquity of the conditions in our recent work on optimal
    local law at the spectral edges for addition of random matrices [5].
acknowledgement: "Supported in part by Hong Kong RGC Grant ECS 26301517.\r\nSupported
  in part by ERC Advanced Grant RANMAT No. 338804.\r\nSupported in part by the Knut
  and Alice Wallenberg Foundation and the Swedish Research Council Grant VR-2017-05195."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Zhigang
  full_name: Bao, Zhigang
  id: 442E6A6C-F248-11E8-B48F-1D18A9856A87
  last_name: Bao
  orcid: 0000-0003-3036-1475
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
  last_name: Erdös
  orcid: 0000-0001-5366-9603
- first_name: Kevin
  full_name: Schnelli, Kevin
  id: 434AD0AE-F248-11E8-B48F-1D18A9856A87
  last_name: Schnelli
  orcid: 0000-0003-0954-3231
citation:
  ama: Bao Z, Erdös L, Schnelli K. On the support of the free additive convolution.
    <i>Journal d’Analyse Mathematique</i>. 2020;142:323-348. doi:<a href="https://doi.org/10.1007/s11854-020-0135-2">10.1007/s11854-020-0135-2</a>
  apa: Bao, Z., Erdös, L., &#38; Schnelli, K. (2020). On the support of the free additive
    convolution. <i>Journal d’Analyse Mathematique</i>. Springer Nature. <a href="https://doi.org/10.1007/s11854-020-0135-2">https://doi.org/10.1007/s11854-020-0135-2</a>
  chicago: Bao, Zhigang, László Erdös, and Kevin Schnelli. “On the Support of the
    Free Additive Convolution.” <i>Journal d’Analyse Mathematique</i>. Springer Nature,
    2020. <a href="https://doi.org/10.1007/s11854-020-0135-2">https://doi.org/10.1007/s11854-020-0135-2</a>.
  ieee: Z. Bao, L. Erdös, and K. Schnelli, “On the support of the free additive convolution,”
    <i>Journal d’Analyse Mathematique</i>, vol. 142. Springer Nature, pp. 323–348,
    2020.
  ista: Bao Z, Erdös L, Schnelli K. 2020. On the support of the free additive convolution.
    Journal d’Analyse Mathematique. 142, 323–348.
  mla: Bao, Zhigang, et al. “On the Support of the Free Additive Convolution.” <i>Journal
    d’Analyse Mathematique</i>, vol. 142, Springer Nature, 2020, pp. 323–48, doi:<a
    href="https://doi.org/10.1007/s11854-020-0135-2">10.1007/s11854-020-0135-2</a>.
  short: Z. Bao, L. Erdös, K. Schnelli, Journal d’Analyse Mathematique 142 (2020)
    323–348.
date_created: 2021-02-07T23:01:15Z
date_published: 2020-11-01T00:00:00Z
date_updated: 2025-07-10T12:01:37Z
day: '01'
department:
- _id: LaEr
doi: 10.1007/s11854-020-0135-2
ec_funded: 1
external_id:
  arxiv:
  - '1804.11199'
  isi:
  - '000611879400008'
intvolume: '       142'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1804.11199
month: '11'
oa: 1
oa_version: Preprint
page: 323-348
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '338804'
  name: Random matrices, universality and disordered quantum systems
publication: Journal d'Analyse Mathematique
publication_identifier:
  eissn:
  - 1565-8538
  issn:
  - 0021-7670
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: On the support of the free additive convolution
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 142
year: '2020'
...
---
_id: '9123'
abstract:
- lang: eng
  text: 'Inversions are chromosomal rearrangements where the order of genes is reversed.
    Inversions originate by mutation and can be under positive, negative or balancing
    selection. Selective effects result from potential disruptive effects on meiosis,
    gene disruption at inversion breakpoints and, importantly, the effects of inversions
    as modifiers of recombination rate: Recombination is strongly reduced in individuals
    heterozygous for an inversion, allowing for alleles at different loci to be inherited
    as a ‘block’. This may lead to a selective advantage whenever it is favourable
    to keep certain combinations of alleles associated, for example under local adaptation
    with gene flow. Inversions can cover a considerable part of a chromosome and contain
    numerous loci under different selection pressures, so that the resulting overall
    effects may be complex. Empirical data from various systems show that inversions
    may have a prominent role in local adaptation, speciation, parallel evolution,
    the maintenance of polymorphism and sex chromosome evolution.'
article_processing_charge: No
author:
- first_name: Anja M
  full_name: Westram, Anja M
  id: 3C147470-F248-11E8-B48F-1D18A9856A87
  last_name: Westram
  orcid: 0000-0003-1050-4969
- first_name: Rui
  full_name: Faria, Rui
  last_name: Faria
- first_name: Roger
  full_name: Butlin, Roger
  last_name: Butlin
- first_name: Kerstin
  full_name: Johannesson, Kerstin
  last_name: Johannesson
citation:
  ama: 'Westram AM, Faria R, Butlin R, Johannesson K. Inversions and Evolution. In:
    <i>ELS</i>. Wiley; 2020. doi:<a href="https://doi.org/10.1002/9780470015902.a0029007">10.1002/9780470015902.a0029007</a>'
  apa: Westram, A. M., Faria, R., Butlin, R., &#38; Johannesson, K. (2020). Inversions
    and Evolution. In <i>eLS</i>. Wiley. <a href="https://doi.org/10.1002/9780470015902.a0029007">https://doi.org/10.1002/9780470015902.a0029007</a>
  chicago: Westram, Anja M, Rui Faria, Roger Butlin, and Kerstin Johannesson. “Inversions
    and Evolution.” In <i>ELS</i>. Wiley, 2020. <a href="https://doi.org/10.1002/9780470015902.a0029007">https://doi.org/10.1002/9780470015902.a0029007</a>.
  ieee: A. M. Westram, R. Faria, R. Butlin, and K. Johannesson, “Inversions and Evolution,”
    in <i>eLS</i>, Wiley, 2020.
  ista: 'Westram AM, Faria R, Butlin R, Johannesson K. 2020.Inversions and Evolution.
    In: eLS. .'
  mla: Westram, Anja M., et al. “Inversions and Evolution.” <i>ELS</i>, Wiley, 2020,
    doi:<a href="https://doi.org/10.1002/9780470015902.a0029007">10.1002/9780470015902.a0029007</a>.
  short: A.M. Westram, R. Faria, R. Butlin, K. Johannesson, in:, ELS, Wiley, 2020.
date_created: 2021-02-15T12:39:04Z
date_published: 2020-05-16T00:00:00Z
date_updated: 2026-04-16T10:25:26Z
day: '16'
department:
- _id: NiBa
doi: 10.1002/9780470015902.a0029007
language:
- iso: eng
month: '05'
oa_version: None
publication: eLS
publication_identifier:
  eissn:
  - '9780470015902'
  isbn:
  - '9780470016176'
publication_status: published
publisher: Wiley
quality_controlled: '1'
status: public
title: Inversions and Evolution
type: book_chapter
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2020'
...
---
_id: '9124'
abstract:
- lang: eng
  text: The couplings among clouds, convection, and circulation in trade-wind regimes
    remain a fundamental puzzle that limits our ability to constrain future climate
    change. Radiative heating plays an important role in these couplings. Here we
    calculate the clear-sky radiative profiles from 2001 in-situ soundings (978 dropsondes
    and 1023 radiosondes) collected during the EUREC4A field campaign, which took
    place south and east of Barbados in January–February 2020. We describe the method
    used to calculate these radiative profiles and present preliminary results sampling
    variability at multiple scales, from the variability across all soundings to groupings
    by diurnal cycle and mesoscale organization state, as well as individual soundings
    associated with elevated moisture layers. This clear-sky radiative profiles data
    set can provide important missing detail to what can be learned from calculations
    based on passive remote sensing and help in investigating the role of radiation
    in dynamic and thermodynamic variability in trade-wind regimes. All data are archived
    and freely available for public access on AERIS (Albright et al. (2020), https://doi.org/10.25326/78).
article_processing_charge: No
author:
- first_name: Anna Lea
  full_name: Albright, Anna Lea
  last_name: Albright
- first_name: Benjamin
  full_name: Fildier, Benjamin
  last_name: Fildier
- first_name: Ludovic
  full_name: Touzé-Peiffer, Ludovic
  last_name: Touzé-Peiffer
- first_name: Robert
  full_name: Pincus, Robert
  last_name: Pincus
- first_name: Jessica
  full_name: Vial, Jessica
  last_name: Vial
- first_name: Caroline J
  full_name: Muller, Caroline J
  id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
  last_name: Muller
  orcid: 0000-0001-5836-5350
citation:
  ama: Albright AL, Fildier B, Touzé-Peiffer L, Pincus R, Vial J, Muller CJ. Atmospheric
    radiative profiles during EUREC4A. <i>Earth System Science Data</i>. doi:<a href="https://doi.org/10.5194/essd-2020-269">10.5194/essd-2020-269</a>
  apa: Albright, A. L., Fildier, B., Touzé-Peiffer, L., Pincus, R., Vial, J., &#38;
    Muller, C. J. (n.d.). Atmospheric radiative profiles during EUREC4A. <i>Earth
    System Science Data</i>. Copernicus Publications. <a href="https://doi.org/10.5194/essd-2020-269">https://doi.org/10.5194/essd-2020-269</a>
  chicago: Albright, Anna Lea, Benjamin Fildier, Ludovic Touzé-Peiffer, Robert Pincus,
    Jessica Vial, and Caroline J Muller. “Atmospheric Radiative Profiles during EUREC4A.”
    <i>Earth System Science Data</i>. Copernicus Publications, n.d. <a href="https://doi.org/10.5194/essd-2020-269">https://doi.org/10.5194/essd-2020-269</a>.
  ieee: A. L. Albright, B. Fildier, L. Touzé-Peiffer, R. Pincus, J. Vial, and C. J.
    Muller, “Atmospheric radiative profiles during EUREC4A,” <i>Earth System Science
    Data</i>. Copernicus Publications.
  ista: Albright AL, Fildier B, Touzé-Peiffer L, Pincus R, Vial J, Muller CJ. Atmospheric
    radiative profiles during EUREC4A. Earth System Science Data, <a href="https://doi.org/10.5194/essd-2020-269">10.5194/essd-2020-269</a>.
  mla: Albright, Anna Lea, et al. “Atmospheric Radiative Profiles during EUREC4A.”
    <i>Earth System Science Data</i>, Copernicus Publications, doi:<a href="https://doi.org/10.5194/essd-2020-269">10.5194/essd-2020-269</a>.
  short: A.L. Albright, B. Fildier, L. Touzé-Peiffer, R. Pincus, J. Vial, C.J. Muller,
    Earth System Science Data (n.d.).
date_created: 2021-02-15T14:05:54Z
date_published: 2020-09-24T00:00:00Z
date_updated: 2022-01-24T12:27:08Z
day: '24'
doi: 10.5194/essd-2020-269
extern: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5194/essd-2020-269
month: '09'
oa: 1
oa_version: Preprint
publication: Earth System Science Data
publication_status: submitted
publisher: Copernicus Publications
status: public
title: Atmospheric radiative profiles during EUREC4A
type: preprint
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2020'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '9125'
abstract:
- lang: eng
  text: This study investigates the feedbacks between an interactive sea surface temperature
    (SST) and the self‐aggregation of deep convective clouds, using a cloud‐resolving
    model in nonrotating radiative‐convective equilibrium. The ocean is modeled as
    one layer slab with a temporally fixed mean but spatially varying temperature.
    We find that the interactive SST decelerates the aggregation and that the deceleration
    is larger with a shallower slab, consistent with earlier studies. The surface
    temperature anomaly in dry regions is positive at first, thus opposing the diverging
    shallow circulation known to favor self‐aggregation, consistent with the slower
    aggregation. But surprisingly, the driest columns then have a negative SST anomaly,
    thus strengthening the diverging shallow circulation and favoring aggregation.
    This diverging circulation out of dry regions is found to be well correlated with
    the aggregation speed. It can be linked to a positive surface pressure anomaly
    (PSFC), itself the consequence of SST anomalies and boundary layer radiative cooling.
    The latter cools and dries the boundary layer, thus increasing PSFC anomalies
    through virtual effects and hydrostasy. Sensitivity experiments confirm the key
    role played by boundary layer radiative cooling in determining PSFC anomalies
    in dry regions, and thus the shallow diverging circulation and the aggregation
    speed.
article_number: e2020MS002164
article_processing_charge: No
article_type: original
author:
- first_name: S.
  full_name: Shamekh, S.
  last_name: Shamekh
- first_name: Caroline J
  full_name: Muller, Caroline J
  id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
  last_name: Muller
  orcid: 0000-0001-5836-5350
- first_name: J.‐P.
  full_name: Duvel, J.‐P.
  last_name: Duvel
- first_name: F.
  full_name: D'Andrea, F.
  last_name: D'Andrea
citation:
  ama: Shamekh S, Muller CJ, Duvel J ‐P., D’Andrea F. Self‐aggregation of convective
    clouds with interactive sea surface temperature. <i>Journal of Advances in Modeling
    Earth Systems</i>. 2020;12(11). doi:<a href="https://doi.org/10.1029/2020ms002164">10.1029/2020ms002164</a>
  apa: Shamekh, S., Muller, C. J., Duvel, J. ‐P., &#38; D’Andrea, F. (2020). Self‐aggregation
    of convective clouds with interactive sea surface temperature. <i>Journal of Advances
    in Modeling Earth Systems</i>. American Geophysical Union. <a href="https://doi.org/10.1029/2020ms002164">https://doi.org/10.1029/2020ms002164</a>
  chicago: Shamekh, S., Caroline J Muller, J.‐P. Duvel, and F. D’Andrea. “Self‐aggregation
    of Convective Clouds with Interactive Sea Surface Temperature.” <i>Journal of
    Advances in Modeling Earth Systems</i>. American Geophysical Union, 2020. <a href="https://doi.org/10.1029/2020ms002164">https://doi.org/10.1029/2020ms002164</a>.
  ieee: S. Shamekh, C. J. Muller, J. ‐P. Duvel, and F. D’Andrea, “Self‐aggregation
    of convective clouds with interactive sea surface temperature,” <i>Journal of
    Advances in Modeling Earth Systems</i>, vol. 12, no. 11. American Geophysical
    Union, 2020.
  ista: Shamekh S, Muller CJ, Duvel J ‐P., D’Andrea F. 2020. Self‐aggregation of convective
    clouds with interactive sea surface temperature. Journal of Advances in Modeling
    Earth Systems. 12(11), e2020MS002164.
  mla: Shamekh, S., et al. “Self‐aggregation of Convective Clouds with Interactive
    Sea Surface Temperature.” <i>Journal of Advances in Modeling Earth Systems</i>,
    vol. 12, no. 11, e2020MS002164, American Geophysical Union, 2020, doi:<a href="https://doi.org/10.1029/2020ms002164">10.1029/2020ms002164</a>.
  short: S. Shamekh, C.J. Muller, J. ‐P. Duvel, F. D’Andrea, Journal of Advances in
    Modeling Earth Systems 12 (2020).
date_created: 2021-02-15T14:06:23Z
date_published: 2020-11-01T00:00:00Z
date_updated: 2024-10-15T13:46:02Z
day: '01'
doi: 10.1029/2020ms002164
extern: '1'
intvolume: '        12'
issue: '11'
keyword:
- Global and Planetary Change
- General Earth and Planetary Sciences
- Environmental Chemistry
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1029/2020MS002164
month: '11'
oa: 1
oa_version: Published Version
publication: Journal of Advances in Modeling Earth Systems
publication_identifier:
  issn:
  - 1942-2466
  - 1942-2466
publication_status: published
publisher: American Geophysical Union
quality_controlled: '1'
status: public
title: Self‐aggregation of convective clouds with interactive sea surface temperature
type: journal_article
user_id: 0043cee0-e5fc-11ee-9736-f83bc23afbf0
volume: 12
year: '2020'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '9126'
abstract:
- lang: eng
  text: The goal of this study is to understand the mechanisms controlling the isotopic
    composition of the water vapor near the surface of tropical oceans, at the scale
    of about a hundred kilometers and a month. In the tropics, it has long been observed
    that the isotopic compositions of rain and vapor near the surface are more depleted
    when the precipitation rate is high. This is called the “amount effect.” Previous
    studies, based on observations or models with parameterized convection, have highlighted
    the roles of deep convective and mesoscale downdrafts and rain evaporation. But
    the relative importance of these processes has never been quantified. We hypothesize
    that it can be quantified using an analytical model constrained by large‐eddy
    simulations. Results from large‐eddy simulations confirm that the classical amount
    effect can be simulated only if precipitation rate changes result from changes
    in the large‐scale circulation. We find that the main process depleting the water
    vapor compared to the equilibrium with the ocean is the fact that updrafts stem
    from areas where the water vapor is more enriched. The main process responsible
    for the amount effect is the fact that when the large‐scale ascent increases,
    isotopic vertical gradients are steeper, so that updrafts and downdrafts deplete
    the subcloud layer more efficiently.
article_number: e2020MS002106
article_processing_charge: No
article_type: original
author:
- first_name: Camille
  full_name: Risi, Camille
  last_name: Risi
- first_name: Caroline J
  full_name: Muller, Caroline J
  id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
  last_name: Muller
  orcid: 0000-0001-5836-5350
- first_name: Peter
  full_name: Blossey, Peter
  last_name: Blossey
citation:
  ama: Risi C, Muller CJ, Blossey P. What controls the water vapor isotopic composition
    near the surface of tropical oceans? Results from an analytical model constrained
    by large‐eddy simulations. <i>Journal of Advances in Modeling Earth Systems</i>.
    2020;12(8). doi:<a href="https://doi.org/10.1029/2020ms002106">10.1029/2020ms002106</a>
  apa: Risi, C., Muller, C. J., &#38; Blossey, P. (2020). What controls the water
    vapor isotopic composition near the surface of tropical oceans? Results from an
    analytical model constrained by large‐eddy simulations. <i>Journal of Advances
    in Modeling Earth Systems</i>. American Geophysical Union. <a href="https://doi.org/10.1029/2020ms002106">https://doi.org/10.1029/2020ms002106</a>
  chicago: Risi, Camille, Caroline J Muller, and Peter Blossey. “What Controls the
    Water Vapor Isotopic Composition near the Surface of Tropical Oceans? Results
    from an Analytical Model Constrained by Large‐eddy Simulations.” <i>Journal of
    Advances in Modeling Earth Systems</i>. American Geophysical Union, 2020. <a href="https://doi.org/10.1029/2020ms002106">https://doi.org/10.1029/2020ms002106</a>.
  ieee: C. Risi, C. J. Muller, and P. Blossey, “What controls the water vapor isotopic
    composition near the surface of tropical oceans? Results from an analytical model
    constrained by large‐eddy simulations,” <i>Journal of Advances in Modeling Earth
    Systems</i>, vol. 12, no. 8. American Geophysical Union, 2020.
  ista: Risi C, Muller CJ, Blossey P. 2020. What controls the water vapor isotopic
    composition near the surface of tropical oceans? Results from an analytical model
    constrained by large‐eddy simulations. Journal of Advances in Modeling Earth Systems.
    12(8), e2020MS002106.
  mla: Risi, Camille, et al. “What Controls the Water Vapor Isotopic Composition near
    the Surface of Tropical Oceans? Results from an Analytical Model Constrained by
    Large‐eddy Simulations.” <i>Journal of Advances in Modeling Earth Systems</i>,
    vol. 12, no. 8, e2020MS002106, American Geophysical Union, 2020, doi:<a href="https://doi.org/10.1029/2020ms002106">10.1029/2020ms002106</a>.
  short: C. Risi, C.J. Muller, P. Blossey, Journal of Advances in Modeling Earth Systems
    12 (2020).
date_created: 2021-02-15T14:06:38Z
date_published: 2020-08-01T00:00:00Z
date_updated: 2024-10-15T13:47:23Z
day: '01'
doi: 10.1029/2020ms002106
extern: '1'
intvolume: '        12'
issue: '8'
keyword:
- Global and Planetary Change
- General Earth and Planetary Sciences
- Environmental Chemistry
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1029/2020MS002106
month: '08'
oa: 1
oa_version: Published Version
publication: Journal of Advances in Modeling Earth Systems
publication_identifier:
  issn:
  - 1942-2466
  - 1942-2466
publication_status: published
publisher: American Geophysical Union
quality_controlled: '1'
status: public
title: What controls the water vapor isotopic composition near the surface of tropical
  oceans? Results from an analytical model constrained by large‐eddy simulations
type: journal_article
user_id: 0043cee0-e5fc-11ee-9736-f83bc23afbf0
volume: 12
year: '2020'
...
---
_id: '9127'
abstract:
- lang: eng
  text: Nearly all regions in the world are projected to become dryer in a warming
    climate. Here, we investigate the Mediterranean region, often referred to as a
    climate change “hot spot”. From regional climate simulations, it is shown that
    although enhanced warming and drying over land is projected, the spatial pattern
    displays high variability. Indeed, drying is largely caused by enhanced warming
    over land. However, in Northern Europe, soil moisture alleviates warming induced
    drying by up to 50% due to humidity uptake from land. In already arid regions,
    the Mediterranean Sea is generally the only humidity source, and drying is only
    due to land warming. However, over Sahara and the Iberian Peninsula, enhanced
    warming over land is insufficient to explain the extreme drying. These regions
    are also isolated from humidity advection by heat lows, which are cyclonic circulation
    anomalies associated with surface heating over land. The cyclonic circulation
    scales with the temperature gradient between land and ocean which increases with
    climate change, reinforcing the cyclonic circulation over Sahara and the Iberian
    Peninsula, both diverting the zonal advection of humidity to the south of the
    Iberian Peninsula. The dynamics are therefore key in the warming and drying of
    the Mediterranean region, with extreme aridification over the Sahara and Iberian
    Peninsula. In these regions, the risk for human health due to the thermal load
    which accounts for air temperature and humidity is therefore projected to increase
    significantly with climate change at a level of extreme danger.
article_number: '78'
article_processing_charge: No
article_type: original
author:
- first_name: Philippe
  full_name: Drobinski, Philippe
  last_name: Drobinski
- first_name: Nicolas
  full_name: Da Silva, Nicolas
  last_name: Da Silva
- first_name: Sophie
  full_name: Bastin, Sophie
  last_name: Bastin
- first_name: Sylvain
  full_name: Mailler, Sylvain
  last_name: Mailler
- first_name: Caroline J
  full_name: Muller, Caroline J
  id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
  last_name: Muller
  orcid: 0000-0001-5836-5350
- first_name: Bodo
  full_name: Ahrens, Bodo
  last_name: Ahrens
- first_name: Ole B.
  full_name: Christensen, Ole B.
  last_name: Christensen
- first_name: Piero
  full_name: Lionello, Piero
  last_name: Lionello
citation:
  ama: Drobinski P, Da Silva N, Bastin S, et al. How warmer and drier will the Mediterranean
    region be at the end of the twenty-first century? <i>Regional Environmental Change</i>.
    2020;20(9). doi:<a href="https://doi.org/10.1007/s10113-020-01659-w">10.1007/s10113-020-01659-w</a>
  apa: Drobinski, P., Da Silva, N., Bastin, S., Mailler, S., Muller, C. J., Ahrens,
    B., … Lionello, P. (2020). How warmer and drier will the Mediterranean region
    be at the end of the twenty-first century? <i>Regional Environmental Change</i>.
    Springer Nature. <a href="https://doi.org/10.1007/s10113-020-01659-w">https://doi.org/10.1007/s10113-020-01659-w</a>
  chicago: Drobinski, Philippe, Nicolas Da Silva, Sophie Bastin, Sylvain Mailler,
    Caroline J Muller, Bodo Ahrens, Ole B. Christensen, and Piero Lionello. “How Warmer
    and Drier Will the Mediterranean Region Be at the End of the Twenty-First Century?”
    <i>Regional Environmental Change</i>. Springer Nature, 2020. <a href="https://doi.org/10.1007/s10113-020-01659-w">https://doi.org/10.1007/s10113-020-01659-w</a>.
  ieee: P. Drobinski <i>et al.</i>, “How warmer and drier will the Mediterranean region
    be at the end of the twenty-first century?,” <i>Regional Environmental Change</i>,
    vol. 20, no. 9. Springer Nature, 2020.
  ista: Drobinski P, Da Silva N, Bastin S, Mailler S, Muller CJ, Ahrens B, Christensen
    OB, Lionello P. 2020. How warmer and drier will the Mediterranean region be at
    the end of the twenty-first century? Regional Environmental Change. 20(9), 78.
  mla: Drobinski, Philippe, et al. “How Warmer and Drier Will the Mediterranean Region
    Be at the End of the Twenty-First Century?” <i>Regional Environmental Change</i>,
    vol. 20, no. 9, 78, Springer Nature, 2020, doi:<a href="https://doi.org/10.1007/s10113-020-01659-w">10.1007/s10113-020-01659-w</a>.
  short: P. Drobinski, N. Da Silva, S. Bastin, S. Mailler, C.J. Muller, B. Ahrens,
    O.B. Christensen, P. Lionello, Regional Environmental Change 20 (2020).
date_created: 2021-02-15T14:06:58Z
date_published: 2020-09-11T00:00:00Z
date_updated: 2022-01-24T12:28:49Z
day: '11'
doi: 10.1007/s10113-020-01659-w
extern: '1'
intvolume: '        20'
issue: '9'
keyword:
- Global and Planetary Change
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://hal-insu.archives-ouvertes.fr/insu-02881534
month: '09'
oa: 1
oa_version: Submitted Version
publication: Regional Environmental Change
publication_identifier:
  issn:
  - 1436-3798
  - 1436-378X
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: How warmer and drier will the Mediterranean region be at the end of the twenty-first
  century?
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 20
year: '2020'
...
