---
_id: '7488'
abstract:
- lang: eng
  text: Characteristic or classic phenotype of Cornelia de Lange syndrome (CdLS) is
    associated with a recognisable facial pattern. However, the heterogeneity in causal
    genes and the presence of overlapping syndromes have made it increasingly difficult
    to diagnose only by clinical features. DeepGestalt technology, and its app Face2Gene,
    is having a growing impact on the diagnosis and management of genetic diseases
    by analysing the features of affected individuals. Here, we performed a phenotypic
    study on a cohort of 49 individuals harbouring causative variants in known CdLS
    genes in order to evaluate Face2Gene utility and sensitivity in the clinical diagnosis
    of CdLS. Based on the profile images of patients, a diagnosis of CdLS was within
    the top five predicted syndromes for 97.9% of our cases and even listed as first
    prediction for 83.7%. The age of patients did not seem to affect the prediction
    accuracy, whereas our results indicate a correlation between the clinical score
    and affected genes. Furthermore, each gene presents a different pattern recognition
    that may be used to develop new neural networks with the goal of separating different
    genetic subtypes in CdLS. Overall, we conclude that computer-assisted image analysis
    based on deep learning could support the clinical diagnosis of CdLS.
article_number: '1042'
article_processing_charge: No
article_type: original
author:
- first_name: Ana
  full_name: Latorre-Pellicer, Ana
  last_name: Latorre-Pellicer
- first_name: Ángela
  full_name: Ascaso, Ángela
  last_name: Ascaso
- first_name: Laura
  full_name: Trujillano, Laura
  last_name: Trujillano
- first_name: Marta
  full_name: Gil-Salvador, Marta
  last_name: Gil-Salvador
- first_name: Maria
  full_name: Arnedo, Maria
  last_name: Arnedo
- first_name: Cristina
  full_name: Lucia-Campos, Cristina
  last_name: Lucia-Campos
- first_name: Rebeca
  full_name: Antoñanzas-Pérez, Rebeca
  last_name: Antoñanzas-Pérez
- first_name: Iñigo
  full_name: Marcos-Alcalde, Iñigo
  last_name: Marcos-Alcalde
- first_name: Ilaria
  full_name: Parenti, Ilaria
  id: D93538B0-5B71-11E9-AC62-02EBE5697425
  last_name: Parenti
- first_name: Gloria
  full_name: Bueno-Lozano, Gloria
  last_name: Bueno-Lozano
- first_name: Antonio
  full_name: Musio, Antonio
  last_name: Musio
- first_name: Beatriz
  full_name: Puisac, Beatriz
  last_name: Puisac
- first_name: Frank J.
  full_name: Kaiser, Frank J.
  last_name: Kaiser
- first_name: Feliciano J.
  full_name: Ramos, Feliciano J.
  last_name: Ramos
- first_name: Paulino
  full_name: Gómez-Puertas, Paulino
  last_name: Gómez-Puertas
- first_name: Juan
  full_name: Pié, Juan
  last_name: Pié
citation:
  ama: Latorre-Pellicer A, Ascaso Á, Trujillano L, et al. Evaluating Face2Gene as
    a tool to identify Cornelia de Lange syndrome by facial phenotypes. <i>International
    Journal of Molecular Sciences</i>. 2020;21(3). doi:<a href="https://doi.org/10.3390/ijms21031042">10.3390/ijms21031042</a>
  apa: Latorre-Pellicer, A., Ascaso, Á., Trujillano, L., Gil-Salvador, M., Arnedo,
    M., Lucia-Campos, C., … Pié, J. (2020). Evaluating Face2Gene as a tool to identify
    Cornelia de Lange syndrome by facial phenotypes. <i>International Journal of Molecular
    Sciences</i>. MDPI. <a href="https://doi.org/10.3390/ijms21031042">https://doi.org/10.3390/ijms21031042</a>
  chicago: Latorre-Pellicer, Ana, Ángela Ascaso, Laura Trujillano, Marta Gil-Salvador,
    Maria Arnedo, Cristina Lucia-Campos, Rebeca Antoñanzas-Pérez, et al. “Evaluating
    Face2Gene as a Tool to Identify Cornelia de Lange Syndrome by Facial Phenotypes.”
    <i>International Journal of Molecular Sciences</i>. MDPI, 2020. <a href="https://doi.org/10.3390/ijms21031042">https://doi.org/10.3390/ijms21031042</a>.
  ieee: A. Latorre-Pellicer <i>et al.</i>, “Evaluating Face2Gene as a tool to identify
    Cornelia de Lange syndrome by facial phenotypes,” <i>International Journal of
    Molecular Sciences</i>, vol. 21, no. 3. MDPI, 2020.
  ista: Latorre-Pellicer A, Ascaso Á, Trujillano L, Gil-Salvador M, Arnedo M, Lucia-Campos
    C, Antoñanzas-Pérez R, Marcos-Alcalde I, Parenti I, Bueno-Lozano G, Musio A, Puisac
    B, Kaiser FJ, Ramos FJ, Gómez-Puertas P, Pié J. 2020. Evaluating Face2Gene as
    a tool to identify Cornelia de Lange syndrome by facial phenotypes. International
    Journal of Molecular Sciences. 21(3), 1042.
  mla: Latorre-Pellicer, Ana, et al. “Evaluating Face2Gene as a Tool to Identify Cornelia
    de Lange Syndrome by Facial Phenotypes.” <i>International Journal of Molecular
    Sciences</i>, vol. 21, no. 3, 1042, MDPI, 2020, doi:<a href="https://doi.org/10.3390/ijms21031042">10.3390/ijms21031042</a>.
  short: A. Latorre-Pellicer, Á. Ascaso, L. Trujillano, M. Gil-Salvador, M. Arnedo,
    C. Lucia-Campos, R. Antoñanzas-Pérez, I. Marcos-Alcalde, I. Parenti, G. Bueno-Lozano,
    A. Musio, B. Puisac, F.J. Kaiser, F.J. Ramos, P. Gómez-Puertas, J. Pié, International
    Journal of Molecular Sciences 21 (2020).
corr_author: '1'
date_created: 2020-02-16T23:00:49Z
date_published: 2020-02-04T00:00:00Z
date_updated: 2025-07-10T11:54:41Z
day: '04'
ddc:
- '570'
department:
- _id: GaNo
doi: 10.3390/ijms21031042
external_id:
  isi:
  - '000522551606028'
file:
- access_level: open_access
  checksum: 0e6658c4fe329d55d4d9bef01c5b15d0
  content_type: application/pdf
  creator: dernst
  date_created: 2020-02-18T07:49:22Z
  date_updated: 2020-07-14T12:47:59Z
  file_id: '7496'
  file_name: 2020_IntMolecSciences_Latorre.pdf
  file_size: 4271234
  relation: main_file
file_date_updated: 2020-07-14T12:47:59Z
has_accepted_license: '1'
intvolume: '        21'
isi: 1
issue: '3'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '02'
oa: 1
oa_version: Published Version
publication: International Journal of Molecular Sciences
publication_identifier:
  eissn:
  - 1422-0067
  issn:
  - 1661-6596
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: Evaluating Face2Gene as a tool to identify Cornelia de Lange syndrome by facial
  phenotypes
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 21
year: '2020'
...
---
_id: '7489'
abstract:
- lang: eng
  text: 'In the present work, we consider the evolution of two fluids separated by
    a sharp interface in the presence of surface tension—like, for example, the evolution
    of oil bubbles in water. Our main result is a weak–strong uniqueness principle
    for the corresponding free boundary problem for the incompressible Navier–Stokes
    equation: as long as a strong solution exists, any varifold solution must coincide
    with it. In particular, in the absence of physical singularities, the concept
    of varifold solutions—whose global in time existence has been shown by Abels (Interfaces
    Free Bound 9(1):31–65, 2007) for general initial data—does not introduce a mechanism
    for non-uniqueness. The key ingredient of our approach is the construction of
    a relative entropy functional capable of controlling the interface error. If the
    viscosities of the two fluids do not coincide, even for classical (strong) solutions
    the gradient of the velocity field becomes discontinuous at the interface, introducing
    the need for a careful additional adaption of the relative entropy.'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Julian L
  full_name: Fischer, Julian L
  id: 2C12A0B0-F248-11E8-B48F-1D18A9856A87
  last_name: Fischer
  orcid: 0000-0002-0479-558X
- first_name: Sebastian
  full_name: Hensel, Sebastian
  id: 4D23B7DA-F248-11E8-B48F-1D18A9856A87
  last_name: Hensel
  orcid: 0000-0001-7252-8072
citation:
  ama: Fischer JL, Hensel S. Weak–strong uniqueness for the Navier–Stokes equation
    for two fluids with surface tension. <i>Archive for Rational Mechanics and Analysis</i>.
    2020;236:967-1087. doi:<a href="https://doi.org/10.1007/s00205-019-01486-2">10.1007/s00205-019-01486-2</a>
  apa: Fischer, J. L., &#38; Hensel, S. (2020). Weak–strong uniqueness for the Navier–Stokes
    equation for two fluids with surface tension. <i>Archive for Rational Mechanics
    and Analysis</i>. Springer Nature. <a href="https://doi.org/10.1007/s00205-019-01486-2">https://doi.org/10.1007/s00205-019-01486-2</a>
  chicago: Fischer, Julian L, and Sebastian Hensel. “Weak–Strong Uniqueness for the
    Navier–Stokes Equation for Two Fluids with Surface Tension.” <i>Archive for Rational
    Mechanics and Analysis</i>. Springer Nature, 2020. <a href="https://doi.org/10.1007/s00205-019-01486-2">https://doi.org/10.1007/s00205-019-01486-2</a>.
  ieee: J. L. Fischer and S. Hensel, “Weak–strong uniqueness for the Navier–Stokes
    equation for two fluids with surface tension,” <i>Archive for Rational Mechanics
    and Analysis</i>, vol. 236. Springer Nature, pp. 967–1087, 2020.
  ista: Fischer JL, Hensel S. 2020. Weak–strong uniqueness for the Navier–Stokes equation
    for two fluids with surface tension. Archive for Rational Mechanics and Analysis.
    236, 967–1087.
  mla: Fischer, Julian L., and Sebastian Hensel. “Weak–Strong Uniqueness for the Navier–Stokes
    Equation for Two Fluids with Surface Tension.” <i>Archive for Rational Mechanics
    and Analysis</i>, vol. 236, Springer Nature, 2020, pp. 967–1087, doi:<a href="https://doi.org/10.1007/s00205-019-01486-2">10.1007/s00205-019-01486-2</a>.
  short: J.L. Fischer, S. Hensel, Archive for Rational Mechanics and Analysis 236
    (2020) 967–1087.
corr_author: '1'
date_created: 2020-02-16T23:00:50Z
date_published: 2020-05-01T00:00:00Z
date_updated: 2026-04-08T07:01:01Z
day: '01'
ddc:
- '530'
- '532'
department:
- _id: JuFi
doi: 10.1007/s00205-019-01486-2
ec_funded: 1
external_id:
  isi:
  - '000511060200001'
file:
- access_level: open_access
  checksum: f107e21b58f5930876f47144be37cf6c
  content_type: application/pdf
  creator: dernst
  date_created: 2020-11-20T09:14:22Z
  date_updated: 2020-11-20T09:14:22Z
  file_id: '8779'
  file_name: 2020_ArchRatMechAn_Fischer.pdf
  file_size: 1897571
  relation: main_file
  success: 1
file_date_updated: 2020-11-20T09:14:22Z
has_accepted_license: '1'
intvolume: '       236'
isi: 1
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: 967-1087
project:
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: Archive for Rational Mechanics and Analysis
publication_identifier:
  eissn:
  - 1432-0673
  issn:
  - 0003-9527
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  record:
  - id: '10007'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Weak–strong uniqueness for the Navier–Stokes equation for two fluids with surface
  tension
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 236
year: '2020'
...
---
_id: '7490'
abstract:
- lang: eng
  text: In plants, clathrin mediated endocytosis (CME) represents the major route
    for cargo internalisation from the cell surface. It has been assumed to operate
    in an evolutionary conserved manner as in yeast and animals. Here we report characterisation
    of ultrastructure, dynamics and mechanisms of plant CME as allowed by our advancement
    in electron microscopy and quantitative live imaging techniques. Arabidopsis CME
    appears to follow the constant curvature model and the bona fide CME population
    generates vesicles of a predominantly hexagonal-basket type; larger and with faster
    kinetics than in other models. Contrary to the existing paradigm, actin is dispensable
    for CME events at the plasma membrane but plays a unique role in collecting endocytic
    vesicles, sorting of internalised cargos and directional endosome movement that
    itself actively promote CME events. Internalized vesicles display a strongly delayed
    and sequential uncoating. These unique features highlight the independent evolution
    of the plant CME mechanism during the autonomous rise of multicellularity in eukaryotes.
acknowledged_ssus:
- _id: LifeSc
- _id: Bio
- _id: EM-Fac
article_number: e52067
article_processing_charge: No
article_type: original
author:
- first_name: Madhumitha
  full_name: Narasimhan, Madhumitha
  id: 44BF24D0-F248-11E8-B48F-1D18A9856A87
  last_name: Narasimhan
  orcid: 0000-0002-8600-0671
- first_name: Alexander J
  full_name: Johnson, Alexander J
  id: 46A62C3A-F248-11E8-B48F-1D18A9856A87
  last_name: Johnson
  orcid: 0000-0002-2739-8843
- first_name: Roshan
  full_name: Prizak, Roshan
  id: 4456104E-F248-11E8-B48F-1D18A9856A87
  last_name: Prizak
- first_name: Walter
  full_name: Kaufmann, Walter
  id: 3F99E422-F248-11E8-B48F-1D18A9856A87
  last_name: Kaufmann
  orcid: 0000-0001-9735-5315
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: Barbara E
  full_name: Casillas Perez, Barbara E
  id: 351ED2AA-F248-11E8-B48F-1D18A9856A87
  last_name: Casillas Perez
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Narasimhan M, Johnson AJ, Prizak R, et al. Evolutionarily unique mechanistic
    framework of clathrin-mediated endocytosis in plants. <i>eLife</i>. 2020;9. doi:<a
    href="https://doi.org/10.7554/eLife.52067">10.7554/eLife.52067</a>
  apa: Narasimhan, M., Johnson, A. J., Prizak, R., Kaufmann, W., Tan, S., Casillas
    Perez, B. E., &#38; Friml, J. (2020). Evolutionarily unique mechanistic framework
    of clathrin-mediated endocytosis in plants. <i>ELife</i>. eLife Sciences Publications.
    <a href="https://doi.org/10.7554/eLife.52067">https://doi.org/10.7554/eLife.52067</a>
  chicago: Narasimhan, Madhumitha, Alexander J Johnson, Roshan Prizak, Walter Kaufmann,
    Shutang Tan, Barbara E Casillas Perez, and Jiří Friml. “Evolutionarily Unique
    Mechanistic Framework of Clathrin-Mediated Endocytosis in Plants.” <i>ELife</i>.
    eLife Sciences Publications, 2020. <a href="https://doi.org/10.7554/eLife.52067">https://doi.org/10.7554/eLife.52067</a>.
  ieee: M. Narasimhan <i>et al.</i>, “Evolutionarily unique mechanistic framework
    of clathrin-mediated endocytosis in plants,” <i>eLife</i>, vol. 9. eLife Sciences
    Publications, 2020.
  ista: Narasimhan M, Johnson AJ, Prizak R, Kaufmann W, Tan S, Casillas Perez BE,
    Friml J. 2020. Evolutionarily unique mechanistic framework of clathrin-mediated
    endocytosis in plants. eLife. 9, e52067.
  mla: Narasimhan, Madhumitha, et al. “Evolutionarily Unique Mechanistic Framework
    of Clathrin-Mediated Endocytosis in Plants.” <i>ELife</i>, vol. 9, e52067, eLife
    Sciences Publications, 2020, doi:<a href="https://doi.org/10.7554/eLife.52067">10.7554/eLife.52067</a>.
  short: M. Narasimhan, A.J. Johnson, R. Prizak, W. Kaufmann, S. Tan, B.E. Casillas
    Perez, J. Friml, ELife 9 (2020).
date_created: 2020-02-16T23:00:50Z
date_published: 2020-01-23T00:00:00Z
date_updated: 2025-04-14T07:45:03Z
day: '23'
ddc:
- '570'
- '580'
department:
- _id: JiFr
- _id: GaTk
- _id: EM-Fac
- _id: SyCr
doi: 10.7554/eLife.52067
ec_funded: 1
external_id:
  isi:
  - '000514104100001'
  pmid:
  - '31971511'
file:
- access_level: open_access
  checksum: 2052daa4be5019534f3a42f200a09f32
  content_type: application/pdf
  creator: dernst
  date_created: 2020-02-18T07:21:16Z
  date_updated: 2020-07-14T12:47:59Z
  file_id: '7494'
  file_name: 2020_eLife_Narasimhan.pdf
  file_size: 7247468
  relation: main_file
file_date_updated: 2020-07-14T12:47:59Z
has_accepted_license: '1'
intvolume: '         9'
isi: 1
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 26538374-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03630
  name: Molecular mechanisms of endocytic cargo recognition in plants
publication: eLife
publication_identifier:
  eissn:
  - 2050-084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
scopus_import: '1'
status: public
title: Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis
  in plants
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 9
year: '2020'
...
---
_id: '7497'
abstract:
- lang: eng
  text: Endophytic fungi can be beneficial to plant growth. However, the molecular
    mechanisms underlying colonization of Acremonium spp. remain unclear. In this
    study, a novel endophytic Acremonium strain was isolated from the buds of Panax
    notoginseng and named Acremonium sp. D212. The Acremonium sp. D212 could colonize
    the roots of P. notoginseng, enhance the resistance of P. notoginseng to root
    rot disease, and promote root growth and saponin biosynthesis in P. notoginseng.
    Acremonium sp. D212 could secrete indole‐3‐acetic acid (IAA) and jasmonic acid
    (JA), and inoculation with the fungus increased the endogenous levels of IAA and
    JA in P. notoginseng. Colonization of the Acremonium sp. D212 in the roots of
    the rice line Nipponbare was dependent on the concentration of methyl jasmonate
    (MeJA) (2 to 15 μM) and 1‐naphthalenacetic acid (NAA) (10 to 20 μM). Moreover,
    the roots of the JA signalling‐defective coi1‐18 mutant were colonized by Acremonium
    sp. D212 to a lesser degree than those of the wild‐type Nipponbare and miR393b‐overexpressing
    lines, and the colonization was rescued by MeJA but not by NAA. It suggests that
    the cross‐talk between JA signalling and the auxin biosynthetic pathway plays
    a crucial role in the colonization of Acremonium sp. D212 in host plants.
acknowledgement: We thank Professor Jianqiang Wu (Kunming Institute of Botany, Chinese
  Academy of Sciences) for providing generous support with the IAA and JA measurements.
  We thank Professor Guohua Xu (Nanjing Agricultural University) for generously providing
  the Nipponbare rice expressing DR5::GUS. We thank Professor Muyuan Zhu (Zhejiang
  University) for generously providing a rice line expressing 35S::miR393b. We thank
  Professor Yinong Yang (Pennsylvania State University) for generously providing the
  rice line coi1-18. This work was supported by grants from the National Natural Science
  Foundation of China (31660501, 31460453, 31860064 and 31470382), the Major Special
  Program for Scientific Research, Education Department of Yunnan Province (ZD2015005),
  the Project sponsored by SRF for ROCS, SEM ([2013] 1792), the Major Science and
  Technique Programs in Yunnan Province (2016ZF001), the Key Projects of the Applied
  Basic Research Plan of Yunnan Province (2017FA018), the National Key R&D Program
  of China (2018YFD0201100) and the China Agriculture Research System (CARS-21).
article_processing_charge: No
article_type: original
author:
- first_name: L
  full_name: Han, L
  last_name: Han
- first_name: X
  full_name: Zhou, X
  last_name: Zhou
- first_name: Y
  full_name: Zhao, Y
  last_name: Zhao
- first_name: S
  full_name: Zhu, S
  last_name: Zhu
- first_name: L
  full_name: Wu, L
  last_name: Wu
- first_name: Y
  full_name: He, Y
  last_name: He
- first_name: X
  full_name: Ping, X
  last_name: Ping
- first_name: X
  full_name: Lu, X
  last_name: Lu
- first_name: W
  full_name: Huang, W
  last_name: Huang
- first_name: J
  full_name: Qian, J
  last_name: Qian
- first_name: L
  full_name: Zhang, L
  last_name: Zhang
- first_name: X
  full_name: Jiang, X
  last_name: Jiang
- first_name: D
  full_name: Zhu, D
  last_name: Zhu
- first_name: C
  full_name: Luo, C
  last_name: Luo
- first_name: S
  full_name: Li, S
  last_name: Li
- first_name: Q
  full_name: Dong, Q
  last_name: Dong
- first_name: Q
  full_name: Fu, Q
  last_name: Fu
- first_name: K
  full_name: Deng, K
  last_name: Deng
- first_name: X
  full_name: Wang, X
  last_name: Wang
- first_name: L
  full_name: Wang, L
  last_name: Wang
- first_name: S
  full_name: Peng, S
  last_name: Peng
- first_name: J
  full_name: Wu, J
  last_name: Wu
- first_name: W
  full_name: Li, W
  last_name: Li
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Y
  full_name: Zhu, Y
  last_name: Zhu
- first_name: X
  full_name: He, X
  last_name: He
- first_name: Y
  full_name: Du, Y
  last_name: Du
citation:
  ama: Han L, Zhou X, Zhao Y, et al. Colonization of endophyte Acremonium sp. D212
    in Panax notoginseng and rice mediated by auxin and jasmonic acid. <i>Journal
    of Integrative Plant Biology</i>. 2020;62(9):1433-1451. doi:<a href="https://doi.org/10.1111/jipb.12905">10.1111/jipb.12905</a>
  apa: Han, L., Zhou, X., Zhao, Y., Zhu, S., Wu, L., He, Y., … Du, Y. (2020). Colonization
    of endophyte Acremonium sp. D212 in Panax notoginseng and rice mediated by auxin
    and jasmonic acid. <i>Journal of Integrative Plant Biology</i>. Wiley. <a href="https://doi.org/10.1111/jipb.12905">https://doi.org/10.1111/jipb.12905</a>
  chicago: Han, L, X Zhou, Y Zhao, S Zhu, L Wu, Y He, X Ping, et al. “Colonization
    of Endophyte Acremonium Sp. D212 in Panax Notoginseng and Rice Mediated by Auxin
    and Jasmonic Acid.” <i>Journal of Integrative Plant Biology</i>. Wiley, 2020.
    <a href="https://doi.org/10.1111/jipb.12905">https://doi.org/10.1111/jipb.12905</a>.
  ieee: L. Han <i>et al.</i>, “Colonization of endophyte Acremonium sp. D212 in Panax
    notoginseng and rice mediated by auxin and jasmonic acid,” <i>Journal of Integrative
    Plant Biology</i>, vol. 62, no. 9. Wiley, pp. 1433–1451, 2020.
  ista: Han L, Zhou X, Zhao Y, Zhu S, Wu L, He Y, Ping X, Lu X, Huang W, Qian J, Zhang
    L, Jiang X, Zhu D, Luo C, Li S, Dong Q, Fu Q, Deng K, Wang X, Wang L, Peng S,
    Wu J, Li W, Friml J, Zhu Y, He X, Du Y. 2020. Colonization of endophyte Acremonium
    sp. D212 in Panax notoginseng and rice mediated by auxin and jasmonic acid. Journal
    of Integrative Plant Biology. 62(9), 1433–1451.
  mla: Han, L., et al. “Colonization of Endophyte Acremonium Sp. D212 in Panax Notoginseng
    and Rice Mediated by Auxin and Jasmonic Acid.” <i>Journal of Integrative Plant
    Biology</i>, vol. 62, no. 9, Wiley, 2020, pp. 1433–51, doi:<a href="https://doi.org/10.1111/jipb.12905">10.1111/jipb.12905</a>.
  short: L. Han, X. Zhou, Y. Zhao, S. Zhu, L. Wu, Y. He, X. Ping, X. Lu, W. Huang,
    J. Qian, L. Zhang, X. Jiang, D. Zhu, C. Luo, S. Li, Q. Dong, Q. Fu, K. Deng, X.
    Wang, L. Wang, S. Peng, J. Wu, W. Li, J. Friml, Y. Zhu, X. He, Y. Du, Journal
    of Integrative Plant Biology 62 (2020) 1433–1451.
date_created: 2020-02-18T10:02:25Z
date_published: 2020-09-01T00:00:00Z
date_updated: 2026-06-18T19:22:29Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1111/jipb.12905
external_id:
  isi:
  - '000515803000001'
  pmid:
  - '31912615'
intvolume: '        62'
isi: 1
issue: '9'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1111/jipb.12905
month: '09'
oa: 1
oa_version: Published Version
page: 1433-1451
pmid: 1
publication: Journal of Integrative Plant Biology
publication_identifier:
  eissn:
  - 1744-7909
  issn:
  - 1672-9072
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Colonization of endophyte Acremonium sp. D212 in Panax notoginseng and rice
  mediated by auxin and jasmonic acid
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 62
year: '2020'
...
---
_id: '7505'
abstract:
- lang: eng
  text: Neural networks have demonstrated unmatched performance in a range of classification
    tasks. Despite numerous efforts of the research community, novelty detection remains
    one of the significant limitations of neural networks. The ability to identify
    previously unseen inputs as novel is crucial for our understanding of the decisions
    made by neural networks. At runtime, inputs not falling into any of the categories
    learned during training cannot be classified correctly by the neural network.
    Existing approaches treat the neural network as a black box and try to detect
    novel inputs based on the confidence of the output predictions. However, neural
    networks are not trained to reduce their confidence for novel inputs, which limits
    the effectiveness of these approaches. We propose a framework to monitor a neural
    network by observing the hidden layers. We employ a common abstraction from program
    analysis - boxes - to identify novel behaviors in the monitored layers, i.e.,
    inputs that cause behaviors outside the box. For each neuron, the boxes range
    over the values seen in training. The framework is efficient and flexible to achieve
    a desired trade-off between raising false warnings and detecting novel inputs.
    We illustrate the performance and the robustness to variability in the unknown
    classes on popular image-classification benchmarks.
acknowledgement: We thank Christoph Lampert and Nikolaus Mayer for fruitful discussions.
  This research was supported in part by the Austrian Science Fund (FWF) under grants
  S11402-N23 (RiSE/SHiNE) and Z211-N23 (Wittgenstein Award) and the European Union’s
  Horizon 2020 research and innovation programme under the Marie SkłodowskaCurie grant
  agreement No. 754411.
alternative_title:
- Frontiers in Artificial Intelligence and Applications
article_processing_charge: No
arxiv: 1
author:
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
- first_name: Anna
  full_name: Lukina, Anna
  id: CBA4D1A8-0FE8-11E9-BDE6-07BFE5697425
  last_name: Lukina
- first_name: Christian
  full_name: Schilling, Christian
  id: 3A2F4DCE-F248-11E8-B48F-1D18A9856A87
  last_name: Schilling
  orcid: 0000-0003-3658-1065
citation:
  ama: 'Henzinger TA, Lukina A, Schilling C. Outside the box: Abstraction-based monitoring
    of neural networks. In: <i>24th European Conference on Artificial Intelligence</i>.
    Vol 325. IOS Press; 2020:2433-2440. doi:<a href="https://doi.org/10.3233/FAIA200375">10.3233/FAIA200375</a>'
  apa: 'Henzinger, T. A., Lukina, A., &#38; Schilling, C. (2020). Outside the box:
    Abstraction-based monitoring of neural networks. In <i>24th European Conference
    on Artificial Intelligence</i> (Vol. 325, pp. 2433–2440). Santiago de Compostela,
    Spain: IOS Press. <a href="https://doi.org/10.3233/FAIA200375">https://doi.org/10.3233/FAIA200375</a>'
  chicago: 'Henzinger, Thomas A, Anna Lukina, and Christian Schilling. “Outside the
    Box: Abstraction-Based Monitoring of Neural Networks.” In <i>24th European Conference
    on Artificial Intelligence</i>, 325:2433–40. IOS Press, 2020. <a href="https://doi.org/10.3233/FAIA200375">https://doi.org/10.3233/FAIA200375</a>.'
  ieee: 'T. A. Henzinger, A. Lukina, and C. Schilling, “Outside the box: Abstraction-based
    monitoring of neural networks,” in <i>24th European Conference on Artificial Intelligence</i>,
    Santiago de Compostela, Spain, 2020, vol. 325, pp. 2433–2440.'
  ista: 'Henzinger TA, Lukina A, Schilling C. 2020. Outside the box: Abstraction-based
    monitoring of neural networks. 24th European Conference on Artificial Intelligence.
    ECAI: European Conference on Artificial Intelligence, Frontiers in Artificial
    Intelligence and Applications, vol. 325, 2433–2440.'
  mla: 'Henzinger, Thomas A., et al. “Outside the Box: Abstraction-Based Monitoring
    of Neural Networks.” <i>24th European Conference on Artificial Intelligence</i>,
    vol. 325, IOS Press, 2020, pp. 2433–40, doi:<a href="https://doi.org/10.3233/FAIA200375">10.3233/FAIA200375</a>.'
  short: T.A. Henzinger, A. Lukina, C. Schilling, in:, 24th European Conference on
    Artificial Intelligence, IOS Press, 2020, pp. 2433–2440.
conference:
  end_date: 2020-09-08
  location: Santiago de Compostela, Spain
  name: 'ECAI: European Conference on Artificial Intelligence'
  start_date: 2020-08-29
corr_author: '1'
date_created: 2020-02-21T16:44:03Z
date_published: 2020-02-24T00:00:00Z
date_updated: 2025-04-15T06:26:13Z
day: '24'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.3233/FAIA200375
ec_funded: 1
external_id:
  arxiv:
  - '1911.09032'
  isi:
  - '000650971303002'
file:
- access_level: open_access
  checksum: 80642fa0b6cd7da95dcd87d63789ad5e
  content_type: application/pdf
  creator: dernst
  date_created: 2020-09-21T07:12:32Z
  date_updated: 2020-09-21T07:12:32Z
  file_id: '8540'
  file_name: 2020_ECAI_Henzinger.pdf
  file_size: 1692214
  relation: main_file
  success: 1
file_date_updated: 2020-09-21T07:12:32Z
has_accepted_license: '1'
intvolume: '       325'
isi: 1
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc/4.0/
month: '02'
oa: 1
oa_version: Published Version
page: 2433-2440
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z211
  name: Formal methods for the design and analysis of complex systems
publication: 24th European Conference on Artificial Intelligence
publication_status: published
publisher: IOS Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Outside the box: Abstraction-based monitoring of neural networks'
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: conference
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 325
year: '2020'
...
---
_id: '7508'
abstract:
- lang: eng
  text: In this paper, we introduce a novel method for deriving higher order corrections
    to the mean-field description of the dynamics of interacting bosons. More precisely,
    we consider the dynamics of N d-dimensional bosons for large N. The bosons initially
    form a Bose–Einstein condensate and interact with each other via a pair potential
    of the form (N−1)−1Ndβv(Nβ·)forβ∈[0,14d). We derive a sequence of N-body functions
    which approximate the true many-body dynamics in L2(RdN)-norm to arbitrary precision
    in powers of N−1. The approximating functions are constructed as Duhamel expansions
    of finite order in terms of the first quantised analogue of a Bogoliubov time
    evolution.
acknowledgement: "Open access funding provided by Institute of Science and Technology
  (IST Austria).\r\nL.B. gratefully acknowledges the support by the German Research
  Foundation (DFG) within the Research Training Group 1838 “Spectral Theory and Dynamics
  of Quantum Systems”, and wishes to thank Stefan Teufel, Sören Petrat and Marcello
  Porta for helpful discussions. This project has received funding from the European
  Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie
  Grant Agreement No. 754411. N.P. gratefully acknowledges support from NSF grant
  DMS-1516228 and DMS-1840314. P.P.’s research was funded by DFG Grant no. PI 1114/3-1.
  Part of this work was done when N.P. and P.P. were visiting CCNU, Wuhan. N.P. and
  P.P. thank A.S. for his hospitality at CCNU."
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Lea
  full_name: Bossmann, Lea
  id: A2E3BCBE-5FCC-11E9-AA4B-76F3E5697425
  last_name: Bossmann
  orcid: 0000-0002-6854-1343
- first_name: Nataša
  full_name: Pavlović, Nataša
  last_name: Pavlović
- first_name: Peter
  full_name: Pickl, Peter
  last_name: Pickl
- first_name: Avy
  full_name: Soffer, Avy
  last_name: Soffer
citation:
  ama: Bossmann L, Pavlović N, Pickl P, Soffer A. Higher order corrections to the
    mean-field description of the dynamics of interacting bosons. <i>Journal of Statistical
    Physics</i>. 2020;178:1362-1396. doi:<a href="https://doi.org/10.1007/s10955-020-02500-8">10.1007/s10955-020-02500-8</a>
  apa: Bossmann, L., Pavlović, N., Pickl, P., &#38; Soffer, A. (2020). Higher order
    corrections to the mean-field description of the dynamics of interacting bosons.
    <i>Journal of Statistical Physics</i>. Springer Nature. <a href="https://doi.org/10.1007/s10955-020-02500-8">https://doi.org/10.1007/s10955-020-02500-8</a>
  chicago: Bossmann, Lea, Nataša Pavlović, Peter Pickl, and Avy Soffer. “Higher Order
    Corrections to the Mean-Field Description of the Dynamics of Interacting Bosons.”
    <i>Journal of Statistical Physics</i>. Springer Nature, 2020. <a href="https://doi.org/10.1007/s10955-020-02500-8">https://doi.org/10.1007/s10955-020-02500-8</a>.
  ieee: L. Bossmann, N. Pavlović, P. Pickl, and A. Soffer, “Higher order corrections
    to the mean-field description of the dynamics of interacting bosons,” <i>Journal
    of Statistical Physics</i>, vol. 178. Springer Nature, pp. 1362–1396, 2020.
  ista: Bossmann L, Pavlović N, Pickl P, Soffer A. 2020. Higher order corrections
    to the mean-field description of the dynamics of interacting bosons. Journal of
    Statistical Physics. 178, 1362–1396.
  mla: Bossmann, Lea, et al. “Higher Order Corrections to the Mean-Field Description
    of the Dynamics of Interacting Bosons.” <i>Journal of Statistical Physics</i>,
    vol. 178, Springer Nature, 2020, pp. 1362–96, doi:<a href="https://doi.org/10.1007/s10955-020-02500-8">10.1007/s10955-020-02500-8</a>.
  short: L. Bossmann, N. Pavlović, P. Pickl, A. Soffer, Journal of Statistical Physics
    178 (2020) 1362–1396.
corr_author: '1'
date_created: 2020-02-23T09:45:51Z
date_published: 2020-02-21T00:00:00Z
date_updated: 2025-04-14T07:44:03Z
day: '21'
ddc:
- '510'
department:
- _id: RoSe
doi: 10.1007/s10955-020-02500-8
ec_funded: 1
external_id:
  arxiv:
  - '1905.06164'
  isi:
  - '000516342200001'
file:
- access_level: open_access
  checksum: 643e230bf147e64d9cdb3f6cc573679d
  content_type: application/pdf
  creator: dernst
  date_created: 2020-11-20T09:26:46Z
  date_updated: 2020-11-20T09:26:46Z
  file_id: '8780'
  file_name: 2020_JournStatPhysics_Bossmann.pdf
  file_size: 576726
  relation: main_file
  success: 1
file_date_updated: 2020-11-20T09:26:46Z
has_accepted_license: '1'
intvolume: '       178'
isi: 1
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 1362-1396
project:
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: Journal of Statistical Physics
publication_identifier:
  eissn:
  - 1572-9613
  issn:
  - 0022-4715
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Higher order corrections to the mean-field description of the dynamics of interacting
  bosons
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 178
year: '2020'
...
---
_id: '7509'
abstract:
- lang: eng
  text: "In this paper we study the joint convexity/concavity of the trace functions
    Ψp,q,s(A,B)=Tr(Bq2K∗ApKBq2)s,  p,q,s∈R,\r\nwhere A and B are positive definite
    matrices and K is any fixed invertible matrix. We will give full range of (p,q,s)∈R3
    for Ψp,q,s to be jointly convex/concave for all K. As a consequence, we confirm
    a conjecture of Carlen, Frank and Lieb. In particular, we confirm a weaker conjecture
    of Audenaert and Datta and obtain the full range of (α,z) for α-z Rényi relative
    entropies to be monotone under completely positive trace preserving maps. We also
    give simpler proofs of many known results, including the concavity of Ψp,0,1/p
    for 0<p<1 which was first proved by Epstein using complex analysis. The key is
    to reduce the problem to the joint convexity/concavity of the trace functions
    Ψp,1−p,1(A,B)=TrK∗ApKB1−p,  −1≤p≤1, using a variational method. "
acknowledgement: The author would like to thank Quanhua Xu, Adam Skalski, Ke Li and
  Zhi Yin for their valuable comments. He also would like to thank the anonymous referees
  for pointing out some errors in an earlier version of this paper and for helpful
  comments and suggestions that make this paper better. The research was partially
  supported by the NCN (National Centre of Science) grant 2014/14/E/ST1/00525, the
  French project ISITE-BFC (contract ANR-15-IDEX-03), NSFC No. 11826012, and the European
  Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie
  grant agreement No. 754411.
article_number: '107053'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Haonan
  full_name: Zhang, Haonan
  id: D8F41E38-9E66-11E9-A9E2-65C2E5697425
  last_name: Zhang
citation:
  ama: Zhang H. From Wigner-Yanase-Dyson conjecture to Carlen-Frank-Lieb conjecture.
    <i>Advances in Mathematics</i>. 2020;365. doi:<a href="https://doi.org/10.1016/j.aim.2020.107053">10.1016/j.aim.2020.107053</a>
  apa: Zhang, H. (2020). From Wigner-Yanase-Dyson conjecture to Carlen-Frank-Lieb
    conjecture. <i>Advances in Mathematics</i>. Elsevier. <a href="https://doi.org/10.1016/j.aim.2020.107053">https://doi.org/10.1016/j.aim.2020.107053</a>
  chicago: Zhang, Haonan. “From Wigner-Yanase-Dyson Conjecture to Carlen-Frank-Lieb
    Conjecture.” <i>Advances in Mathematics</i>. Elsevier, 2020. <a href="https://doi.org/10.1016/j.aim.2020.107053">https://doi.org/10.1016/j.aim.2020.107053</a>.
  ieee: H. Zhang, “From Wigner-Yanase-Dyson conjecture to Carlen-Frank-Lieb conjecture,”
    <i>Advances in Mathematics</i>, vol. 365. Elsevier, 2020.
  ista: Zhang H. 2020. From Wigner-Yanase-Dyson conjecture to Carlen-Frank-Lieb conjecture.
    Advances in Mathematics. 365, 107053.
  mla: Zhang, Haonan. “From Wigner-Yanase-Dyson Conjecture to Carlen-Frank-Lieb Conjecture.”
    <i>Advances in Mathematics</i>, vol. 365, 107053, Elsevier, 2020, doi:<a href="https://doi.org/10.1016/j.aim.2020.107053">10.1016/j.aim.2020.107053</a>.
  short: H. Zhang, Advances in Mathematics 365 (2020).
date_created: 2020-02-23T21:43:50Z
date_published: 2020-05-13T00:00:00Z
date_updated: 2025-04-14T07:44:03Z
day: '13'
ddc:
- '515'
department:
- _id: JaMa
doi: 10.1016/j.aim.2020.107053
ec_funded: 1
external_id:
  arxiv:
  - '1811.01205'
  isi:
  - '000522798000001'
intvolume: '       365'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1811.01205
month: '05'
oa: 1
oa_version: Preprint
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: Advances in Mathematics
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: From Wigner-Yanase-Dyson conjecture to Carlen-Frank-Lieb conjecture
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 365
year: '2020'
...
---
_id: '7511'
abstract:
- lang: eng
  text: Cryo electron tomography with subsequent subtomogram averaging is a powerful
    technique to structurally analyze macromolecular complexes in their native context.
    Although close to atomic resolution in principle can be obtained, it is not clear
    how individual experimental parameters contribute to the attainable resolution.
    Here, we have used immature HIV-1 lattice as a benchmarking sample to optimize
    the attainable resolution for subtomogram averaging. We systematically tested
    various experimental parameters such as the order of projections, different angular
    increments and the use of the Volta phase plate. We find that although any of
    the prominently used acquisition schemes is sufficient to obtain subnanometer
    resolution, dose-symmetric acquisition provides considerably better outcome. We
    discuss our findings in order to provide guidance for data acquisition. Our data
    is publicly available and might be used to further develop processing routines.
article_number: '876'
article_processing_charge: No
article_type: original
author:
- first_name: Beata
  full_name: Turoňová, Beata
  last_name: Turoňová
- first_name: Wim J.H.
  full_name: Hagen, Wim J.H.
  last_name: Hagen
- first_name: Martin
  full_name: Obr, Martin
  id: 4741CA5A-F248-11E8-B48F-1D18A9856A87
  last_name: Obr
  orcid: 0000-0003-1756-6564
- first_name: Shyamal
  full_name: Mosalaganti, Shyamal
  last_name: Mosalaganti
- first_name: J. Wouter
  full_name: Beugelink, J. Wouter
  last_name: Beugelink
- first_name: Christian E.
  full_name: Zimmerli, Christian E.
  last_name: Zimmerli
- first_name: Hans Georg
  full_name: Kräusslich, Hans Georg
  last_name: Kräusslich
- first_name: Martin
  full_name: Beck, Martin
  last_name: Beck
citation:
  ama: Turoňová B, Hagen WJH, Obr M, et al. Benchmarking tomographic acquisition schemes
    for high-resolution structural biology. <i>Nature Communications</i>. 2020;11.
    doi:<a href="https://doi.org/10.1038/s41467-020-14535-2">10.1038/s41467-020-14535-2</a>
  apa: Turoňová, B., Hagen, W. J. H., Obr, M., Mosalaganti, S., Beugelink, J. W.,
    Zimmerli, C. E., … Beck, M. (2020). Benchmarking tomographic acquisition schemes
    for high-resolution structural biology. <i>Nature Communications</i>. Springer
    Nature. <a href="https://doi.org/10.1038/s41467-020-14535-2">https://doi.org/10.1038/s41467-020-14535-2</a>
  chicago: Turoňová, Beata, Wim J.H. Hagen, Martin Obr, Shyamal Mosalaganti, J. Wouter
    Beugelink, Christian E. Zimmerli, Hans Georg Kräusslich, and Martin Beck. “Benchmarking
    Tomographic Acquisition Schemes for High-Resolution Structural Biology.” <i>Nature
    Communications</i>. Springer Nature, 2020. <a href="https://doi.org/10.1038/s41467-020-14535-2">https://doi.org/10.1038/s41467-020-14535-2</a>.
  ieee: B. Turoňová <i>et al.</i>, “Benchmarking tomographic acquisition schemes for
    high-resolution structural biology,” <i>Nature Communications</i>, vol. 11. Springer
    Nature, 2020.
  ista: Turoňová B, Hagen WJH, Obr M, Mosalaganti S, Beugelink JW, Zimmerli CE, Kräusslich
    HG, Beck M. 2020. Benchmarking tomographic acquisition schemes for high-resolution
    structural biology. Nature Communications. 11, 876.
  mla: Turoňová, Beata, et al. “Benchmarking Tomographic Acquisition Schemes for High-Resolution
    Structural Biology.” <i>Nature Communications</i>, vol. 11, 876, Springer Nature,
    2020, doi:<a href="https://doi.org/10.1038/s41467-020-14535-2">10.1038/s41467-020-14535-2</a>.
  short: B. Turoňová, W.J.H. Hagen, M. Obr, S. Mosalaganti, J.W. Beugelink, C.E. Zimmerli,
    H.G. Kräusslich, M. Beck, Nature Communications 11 (2020).
date_created: 2020-02-23T23:00:35Z
date_published: 2020-02-13T00:00:00Z
date_updated: 2026-04-03T09:27:26Z
day: '13'
ddc:
- '570'
department:
- _id: FlSc
doi: 10.1038/s41467-020-14535-2
external_id:
  isi:
  - '000514928000017'
  pmid:
  - '32054835'
file:
- access_level: open_access
  checksum: 2c8d10475e1b0d397500760e28bdf561
  content_type: application/pdf
  creator: dernst
  date_created: 2020-02-24T14:00:54Z
  date_updated: 2020-07-14T12:47:59Z
  file_id: '7517'
  file_name: 2020_NatureComm_Turonova.pdf
  file_size: 2027529
  relation: main_file
file_date_updated: 2020-07-14T12:47:59Z
has_accepted_license: '1'
intvolume: '        11'
isi: 1
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
publication: Nature Communications
publication_identifier:
  eissn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Benchmarking tomographic acquisition schemes for high-resolution structural
  biology
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 11
year: '2020'
...
---
_id: '7512'
abstract:
- lang: eng
  text: We consider general self-adjoint polynomials in several independent random
    matrices whose entries are centered and have the same variance. We show that under
    certain conditions the local law holds up to the optimal scale, i.e., the eigenvalue
    density on scales just above the eigenvalue spacing follows the global density
    of states which is determined by free probability theory. We prove that these
    conditions hold for general homogeneous polynomials of degree two and for symmetrized
    products of independent matrices with i.i.d. entries, thus establishing the optimal
    bulk local law for these classes of ensembles. In particular, we generalize a
    similar result of Anderson for anticommutator. For more general polynomials our
    conditions are effectively checkable numerically.
acknowledgement: "The authors are grateful to Oskari Ajanki for his invaluable help
  at the initial stage of this project, to Serban Belinschi for useful discussions,
  to Alexander Tikhomirov for calling our attention to the model example in Section
  6.2 and to the anonymous referee for suggesting to simplify certain proofs. Erdös:
  Partially funded by ERC Advanced Grant RANMAT No. 338804\r\n"
article_number: '108507'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
  last_name: Erdös
  orcid: 0000-0001-5366-9603
- first_name: Torben H
  full_name: Krüger, Torben H
  id: 3020C786-F248-11E8-B48F-1D18A9856A87
  last_name: Krüger
  orcid: 0000-0002-4821-3297
- first_name: Yuriy
  full_name: Nemish, Yuriy
  id: 4D902E6A-F248-11E8-B48F-1D18A9856A87
  last_name: Nemish
  orcid: 0000-0002-7327-856X
citation:
  ama: Erdös L, Krüger TH, Nemish Y. Local laws for polynomials of Wigner matrices.
    <i>Journal of Functional Analysis</i>. 2020;278(12). doi:<a href="https://doi.org/10.1016/j.jfa.2020.108507">10.1016/j.jfa.2020.108507</a>
  apa: Erdös, L., Krüger, T. H., &#38; Nemish, Y. (2020). Local laws for polynomials
    of Wigner matrices. <i>Journal of Functional Analysis</i>. Elsevier. <a href="https://doi.org/10.1016/j.jfa.2020.108507">https://doi.org/10.1016/j.jfa.2020.108507</a>
  chicago: Erdös, László, Torben H Krüger, and Yuriy Nemish. “Local Laws for Polynomials
    of Wigner Matrices.” <i>Journal of Functional Analysis</i>. Elsevier, 2020. <a
    href="https://doi.org/10.1016/j.jfa.2020.108507">https://doi.org/10.1016/j.jfa.2020.108507</a>.
  ieee: L. Erdös, T. H. Krüger, and Y. Nemish, “Local laws for polynomials of Wigner
    matrices,” <i>Journal of Functional Analysis</i>, vol. 278, no. 12. Elsevier,
    2020.
  ista: Erdös L, Krüger TH, Nemish Y. 2020. Local laws for polynomials of Wigner matrices.
    Journal of Functional Analysis. 278(12), 108507.
  mla: Erdös, László, et al. “Local Laws for Polynomials of Wigner Matrices.” <i>Journal
    of Functional Analysis</i>, vol. 278, no. 12, 108507, Elsevier, 2020, doi:<a href="https://doi.org/10.1016/j.jfa.2020.108507">10.1016/j.jfa.2020.108507</a>.
  short: L. Erdös, T.H. Krüger, Y. Nemish, Journal of Functional Analysis 278 (2020).
date_created: 2020-02-23T23:00:36Z
date_published: 2020-07-01T00:00:00Z
date_updated: 2025-07-10T11:54:43Z
day: '01'
department:
- _id: LaEr
doi: 10.1016/j.jfa.2020.108507
ec_funded: 1
external_id:
  arxiv:
  - '1804.11340'
  isi:
  - '000522798900001'
intvolume: '       278'
isi: 1
issue: '12'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1804.11340
month: '07'
oa: 1
oa_version: Preprint
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '338804'
  name: Random matrices, universality and disordered quantum systems
publication: Journal of Functional Analysis
publication_identifier:
  eissn:
  - 1096-0783
  issn:
  - 0022-1236
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Local laws for polynomials of Wigner matrices
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 278
year: '2020'
...
---
OA_place: publisher
_id: '7514'
abstract:
- lang: eng
  text: "We study the interacting homogeneous Bose gas in two spatial dimensions in
    the thermodynamic limit at fixed density. We shall be concerned with some mathematical
    aspects of this complicated problem in many-body quantum mechanics. More specifically,
    we consider the dilute limit where the scattering length of the interaction potential,
    which is a measure for the effective range of the potential, is small compared
    to the average distance between the particles. We are interested in a setting
    with positive (i.e., non-zero) temperature. After giving a survey of the relevant
    literature in the field, we provide some facts and examples to set expectations
    for the two-dimensional system. The crucial difference to the three-dimensional
    system is that there is no Bose–Einstein condensate at positive temperature due
    to the Hohenberg–Mermin–Wagner theorem. However, it turns out that an asymptotic
    formula for the free energy holds similarly to the three-dimensional case.\r\nWe
    motivate this formula by considering a toy model with δ interaction potential.
    By restricting this model Hamiltonian to certain trial states with a quasi-condensate
    we obtain an upper bound for the free energy that still has the quasi-condensate
    fraction as a free parameter. When minimizing over the quasi-condensate fraction,
    we obtain the Berezinskii–Kosterlitz–Thouless critical temperature for superfluidity,
    which plays an important role in our rigorous contribution. The mathematically
    rigorous result that we prove concerns the specific free energy in the dilute
    limit. We give upper and lower bounds on the free energy in terms of the free
    energy of the non-interacting system and a correction term coming from the interaction.
    Both bounds match and thus we obtain the leading term of an asymptotic approximation
    in the dilute limit, provided the thermal wavelength of the particles is of the
    same order (or larger) than the average distance between the particles. The remarkable
    feature of this result is its generality: the correction term depends on the interaction
    potential only through its scattering length and it holds for all nonnegative
    interaction potentials with finite scattering length that are measurable. In particular,
    this allows to model an interaction of hard disks."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Simon
  full_name: Mayer, Simon
  id: 30C4630A-F248-11E8-B48F-1D18A9856A87
  last_name: Mayer
citation:
  ama: Mayer S. The free energy of a dilute two-dimensional Bose gas. 2020. doi:<a
    href="https://doi.org/10.15479/AT:ISTA:7514">10.15479/AT:ISTA:7514</a>
  apa: Mayer, S. (2020). <i>The free energy of a dilute two-dimensional Bose gas</i>.
    Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:7514">https://doi.org/10.15479/AT:ISTA:7514</a>
  chicago: Mayer, Simon. “The Free Energy of a Dilute Two-Dimensional Bose Gas.” Institute
    of Science and Technology Austria, 2020. <a href="https://doi.org/10.15479/AT:ISTA:7514">https://doi.org/10.15479/AT:ISTA:7514</a>.
  ieee: S. Mayer, “The free energy of a dilute two-dimensional Bose gas,” Institute
    of Science and Technology Austria, 2020.
  ista: Mayer S. 2020. The free energy of a dilute two-dimensional Bose gas. Institute
    of Science and Technology Austria.
  mla: Mayer, Simon. <i>The Free Energy of a Dilute Two-Dimensional Bose Gas</i>.
    Institute of Science and Technology Austria, 2020, doi:<a href="https://doi.org/10.15479/AT:ISTA:7514">10.15479/AT:ISTA:7514</a>.
  short: S. Mayer, The Free Energy of a Dilute Two-Dimensional Bose Gas, Institute
    of Science and Technology Austria, 2020.
corr_author: '1'
date_created: 2020-02-24T09:17:27Z
date_published: 2020-02-24T00:00:00Z
date_updated: 2026-04-08T07:25:40Z
day: '24'
ddc:
- '510'
degree_awarded: PhD
department:
- _id: RoSe
- _id: GradSch
doi: 10.15479/AT:ISTA:7514
ec_funded: 1
file:
- access_level: open_access
  checksum: b4de7579ddc1dbdd44ff3f17c48395f6
  content_type: application/pdf
  creator: dernst
  date_created: 2020-02-24T09:15:06Z
  date_updated: 2020-07-14T12:47:59Z
  file_id: '7515'
  file_name: thesis.pdf
  file_size: 1563429
  relation: main_file
- access_level: closed
  checksum: ad7425867b52d7d9e72296e87bc9cb67
  content_type: application/x-zip-compressed
  creator: dernst
  date_created: 2020-02-24T09:15:16Z
  date_updated: 2020-07-14T12:47:59Z
  file_id: '7516'
  file_name: thesis_source.zip
  file_size: 2028038
  relation: source_file
file_date_updated: 2020-07-14T12:47:59Z
has_accepted_license: '1'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: '148'
project:
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694227'
  name: Analysis of quantum many-body systems
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '7524'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
title: The free energy of a dilute two-dimensional Bose gas
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2020'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '7530'
abstract:
- lang: eng
  text: In developing technologies based on superconducting quantum circuits, the
    need to control and route heating is a significant challenge in the experimental
    realisation and operation of these devices. One of the more ubiquitous devices
    in the current quantum computing toolbox is the transmon-type superconducting
    quantum bit, embedded in a resonator-based architecture. In the study of heat
    transport in superconducting circuits, a versatile and sensitive thermometer is
    based on studying the tunnelling characteristics of superconducting probes weakly
    coupled to a normal-metal island. Here we show that by integrating superconducting
    quantum bit coupled to two superconducting resonators at different frequencies,
    each resonator terminated (and thermally populated) by such a mesoscopic thin
    film metal island, one can experimentally observe magnetic flux-tunable photonic
    heat rectification between 0 and 10%.
article_number: '40'
article_processing_charge: No
article_type: original
author:
- first_name: Jorden L
  full_name: Senior, Jorden L
  id: 5479D234-2D30-11EA-89CC-40953DDC885E
  last_name: Senior
  orcid: 0000-0002-0672-9295
- first_name: Azat
  full_name: Gubaydullin, Azat
  last_name: Gubaydullin
- first_name: Bayan
  full_name: Karimi, Bayan
  last_name: Karimi
- first_name: Joonas T.
  full_name: Peltonen, Joonas T.
  last_name: Peltonen
- first_name: Joachim
  full_name: Ankerhold, Joachim
  last_name: Ankerhold
- first_name: Jukka P.
  full_name: Pekola, Jukka P.
  last_name: Pekola
citation:
  ama: Senior JL, Gubaydullin A, Karimi B, Peltonen JT, Ankerhold J, Pekola JP. Heat
    rectification via a superconducting artificial atom. <i>Communications Physics</i>.
    2020;3(1). doi:<a href="https://doi.org/10.1038/s42005-020-0307-5">10.1038/s42005-020-0307-5</a>
  apa: Senior, J. L., Gubaydullin, A., Karimi, B., Peltonen, J. T., Ankerhold, J.,
    &#38; Pekola, J. P. (2020). Heat rectification via a superconducting artificial
    atom. <i>Communications Physics</i>. Springer Nature. <a href="https://doi.org/10.1038/s42005-020-0307-5">https://doi.org/10.1038/s42005-020-0307-5</a>
  chicago: Senior, Jorden L, Azat Gubaydullin, Bayan Karimi, Joonas T. Peltonen, Joachim
    Ankerhold, and Jukka P. Pekola. “Heat Rectification via a Superconducting Artificial
    Atom.” <i>Communications Physics</i>. Springer Nature, 2020. <a href="https://doi.org/10.1038/s42005-020-0307-5">https://doi.org/10.1038/s42005-020-0307-5</a>.
  ieee: J. L. Senior, A. Gubaydullin, B. Karimi, J. T. Peltonen, J. Ankerhold, and
    J. P. Pekola, “Heat rectification via a superconducting artificial atom,” <i>Communications
    Physics</i>, vol. 3, no. 1. Springer Nature, 2020.
  ista: Senior JL, Gubaydullin A, Karimi B, Peltonen JT, Ankerhold J, Pekola JP. 2020.
    Heat rectification via a superconducting artificial atom. Communications Physics.
    3(1), 40.
  mla: Senior, Jorden L., et al. “Heat Rectification via a Superconducting Artificial
    Atom.” <i>Communications Physics</i>, vol. 3, no. 1, 40, Springer Nature, 2020,
    doi:<a href="https://doi.org/10.1038/s42005-020-0307-5">10.1038/s42005-020-0307-5</a>.
  short: J.L. Senior, A. Gubaydullin, B. Karimi, J.T. Peltonen, J. Ankerhold, J.P.
    Pekola, Communications Physics 3 (2020).
date_created: 2020-02-26T13:51:14Z
date_published: 2020-02-25T00:00:00Z
date_updated: 2024-10-15T12:36:24Z
day: '25'
ddc:
- '536'
doi: 10.1038/s42005-020-0307-5
extern: '1'
file:
- access_level: open_access
  checksum: 59255f51d9f113c40e3047e9ac83d367
  content_type: application/pdf
  creator: dernst
  date_created: 2020-03-03T10:41:13Z
  date_updated: 2020-07-14T12:48:00Z
  file_id: '7559'
  file_name: s42005-020-0307-5.pdf
  file_size: 1590721
  relation: main_file
- access_level: open_access
  checksum: 8325ae7b3c869d9aa6ed84823da4000a
  content_type: application/pdf
  creator: dernst
  date_created: 2020-03-03T10:41:13Z
  date_updated: 2020-07-14T12:48:00Z
  file_id: '7560'
  file_name: 42005_2020_307_MOESM1_ESM.pdf
  file_size: 1007249
  relation: main_file
file_date_updated: 2020-07-14T12:48:00Z
has_accepted_license: '1'
intvolume: '         3'
issue: '1'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
publication: Communications Physics
publication_identifier:
  issn:
  - 2399-3650
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Heat rectification via a superconducting artificial atom
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 0043cee0-e5fc-11ee-9736-f83bc23afbf0
volume: 3
year: '2020'
...
---
_id: '7534'
abstract:
- lang: eng
  text: 'In the past two decades, our understanding of the transition to turbulence
    in shear flows with linearly stable laminar solutions has greatly improved. Regarding
    the susceptibility of the laminar flow, two concepts have been particularly useful:
    the edge states and the minimal seeds. In this nonlinear picture of the transition,
    the basin boundary of turbulence is set by the edge state''s stable manifold and
    this manifold comes closest in energy to the laminar equilibrium at the minimal
    seed. We begin this paper by presenting numerical experiments in which three-dimensional
    perturbations are too energetic to trigger turbulence in pipe flow but they do
    lead to turbulence when their amplitude is reduced. We show that this seemingly
    counterintuitive observation is in fact consistent with the fully nonlinear description
    of the transition mediated by the edge state. In order to understand the physical
    mechanisms behind this process, we measure the turbulent kinetic energy production
    and dissipation rates as a function of the radial coordinate. Our main observation
    is that the transition to turbulence relies on the energy amplification away from
    the wall, as opposed to the turbulence itself, whose energy is predominantly produced
    near the wall. This observation is further supported by the similar analyses on
    the minimal seeds and the edge states. Furthermore, we show that the time evolution
    of production-over-dissipation curves provides a clear distinction between the
    different initial amplification stages of the transition to turbulence from the
    minimal seed.'
article_number: '023903'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Nazmi B
  full_name: Budanur, Nazmi B
  id: 3EA1010E-F248-11E8-B48F-1D18A9856A87
  last_name: Budanur
  orcid: 0000-0003-0423-5010
- first_name: Elena
  full_name: Marensi, Elena
  last_name: Marensi
- first_name: Ashley P.
  full_name: Willis, Ashley P.
  last_name: Willis
- first_name: Björn
  full_name: Hof, Björn
  id: 3A374330-F248-11E8-B48F-1D18A9856A87
  last_name: Hof
  orcid: 0000-0003-2057-2754
citation:
  ama: Budanur NB, Marensi E, Willis AP, Hof B. Upper edge of chaos and the energetics
    of transition in pipe flow. <i>Physical Review Fluids</i>. 2020;5(2). doi:<a href="https://doi.org/10.1103/physrevfluids.5.023903">10.1103/physrevfluids.5.023903</a>
  apa: Budanur, N. B., Marensi, E., Willis, A. P., &#38; Hof, B. (2020). Upper edge
    of chaos and the energetics of transition in pipe flow. <i>Physical Review Fluids</i>.
    American Physical Society. <a href="https://doi.org/10.1103/physrevfluids.5.023903">https://doi.org/10.1103/physrevfluids.5.023903</a>
  chicago: Budanur, Nazmi B, Elena Marensi, Ashley P. Willis, and Björn Hof. “Upper
    Edge of Chaos and the Energetics of Transition in Pipe Flow.” <i>Physical Review
    Fluids</i>. American Physical Society, 2020. <a href="https://doi.org/10.1103/physrevfluids.5.023903">https://doi.org/10.1103/physrevfluids.5.023903</a>.
  ieee: N. B. Budanur, E. Marensi, A. P. Willis, and B. Hof, “Upper edge of chaos
    and the energetics of transition in pipe flow,” <i>Physical Review Fluids</i>,
    vol. 5, no. 2. American Physical Society, 2020.
  ista: Budanur NB, Marensi E, Willis AP, Hof B. 2020. Upper edge of chaos and the
    energetics of transition in pipe flow. Physical Review Fluids. 5(2), 023903.
  mla: Budanur, Nazmi B., et al. “Upper Edge of Chaos and the Energetics of Transition
    in Pipe Flow.” <i>Physical Review Fluids</i>, vol. 5, no. 2, 023903, American
    Physical Society, 2020, doi:<a href="https://doi.org/10.1103/physrevfluids.5.023903">10.1103/physrevfluids.5.023903</a>.
  short: N.B. Budanur, E. Marensi, A.P. Willis, B. Hof, Physical Review Fluids 5 (2020).
date_created: 2020-02-27T10:26:57Z
date_published: 2020-02-21T00:00:00Z
date_updated: 2023-08-18T06:44:46Z
day: '21'
department:
- _id: BjHo
doi: 10.1103/physrevfluids.5.023903
external_id:
  arxiv:
  - '1912.09270'
  isi:
  - '000515065100001'
intvolume: '         5'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1912.09270
month: '02'
oa: 1
oa_version: Preprint
publication: Physical Review Fluids
publication_identifier:
  issn:
  - 2469-990X
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Upper edge of chaos and the energetics of transition in pipe flow
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 5
year: '2020'
...
---
_id: '7540'
abstract:
- lang: eng
  text: ' In vitro propagation of the ornamentally interesting species Wikstroemia
    gemmata is limited by the recalcitrance to form adventitious roots. In this article,
    two strategies to improve the rooting capacity of in vitro microcuttings are presented.
    Firstly, the effect of exogenous auxin was evaluated in both light and dark cultivated
    stem segments and also the sucrose-content of the medium was varied in order to
    determine better rooting conditions. Secondly, different spectral lights were
    evaluated and the effect on shoot growth and root induction demonstrated that
    the exact spectral composition of light is important for successful in vitro growth
    and development of Wikstroemia gemmata. We show that exogenous auxin cannot compensate
    for the poor rooting under unfavorable light conditions. Adapting the culture
    conditions is therefore paramount for successful industrial propagation of Wikstroemia
    gemmata. '
article_processing_charge: No
article_type: original
author:
- first_name: Inge
  full_name: Verstraeten, Inge
  id: 362BF7FE-F248-11E8-B48F-1D18A9856A87
  last_name: Verstraeten
  orcid: 0000-0001-7241-2328
- first_name: H.
  full_name: Buyle, H.
  last_name: Buyle
- first_name: S.
  full_name: Werbrouck, S.
  last_name: Werbrouck
- first_name: M.C.
  full_name: Van Labeke, M.C.
  last_name: Van Labeke
- first_name: D.
  full_name: Geelen, D.
  last_name: Geelen
citation:
  ama: Verstraeten I, Buyle H, Werbrouck S, Van Labeke MC, Geelen D. In vitro shoot
    growth and adventitious rooting of Wikstroemia gemmata depends on light quality.
    <i>Israel Journal of Plant Sciences</i>. 2020;67(1-2):16-26. doi:<a href="https://doi.org/10.1163/22238980-20191110">10.1163/22238980-20191110</a>
  apa: Verstraeten, I., Buyle, H., Werbrouck, S., Van Labeke, M. C., &#38; Geelen,
    D. (2020). In vitro shoot growth and adventitious rooting of Wikstroemia gemmata
    depends on light quality. <i>Israel Journal of Plant Sciences</i>. Brill. <a href="https://doi.org/10.1163/22238980-20191110">https://doi.org/10.1163/22238980-20191110</a>
  chicago: Verstraeten, Inge, H. Buyle, S. Werbrouck, M.C. Van Labeke, and D. Geelen.
    “In Vitro Shoot Growth and Adventitious Rooting of Wikstroemia Gemmata Depends
    on Light Quality.” <i>Israel Journal of Plant Sciences</i>. Brill, 2020. <a href="https://doi.org/10.1163/22238980-20191110">https://doi.org/10.1163/22238980-20191110</a>.
  ieee: I. Verstraeten, H. Buyle, S. Werbrouck, M. C. Van Labeke, and D. Geelen, “In
    vitro shoot growth and adventitious rooting of Wikstroemia gemmata depends on
    light quality,” <i>Israel Journal of Plant Sciences</i>, vol. 67, no. 1–2. Brill,
    pp. 16–26, 2020.
  ista: Verstraeten I, Buyle H, Werbrouck S, Van Labeke MC, Geelen D. 2020. In vitro
    shoot growth and adventitious rooting of Wikstroemia gemmata depends on light
    quality. Israel Journal of Plant Sciences. 67(1–2), 16–26.
  mla: Verstraeten, Inge, et al. “In Vitro Shoot Growth and Adventitious Rooting of
    Wikstroemia Gemmata Depends on Light Quality.” <i>Israel Journal of Plant Sciences</i>,
    vol. 67, no. 1–2, Brill, 2020, pp. 16–26, doi:<a href="https://doi.org/10.1163/22238980-20191110">10.1163/22238980-20191110</a>.
  short: I. Verstraeten, H. Buyle, S. Werbrouck, M.C. Van Labeke, D. Geelen, Israel
    Journal of Plant Sciences 67 (2020) 16–26.
date_created: 2020-02-28T09:18:01Z
date_published: 2020-02-01T00:00:00Z
date_updated: 2023-08-18T06:45:15Z
day: '01'
department:
- _id: JiFr
doi: 10.1163/22238980-20191110
external_id:
  isi:
  - '000525343300004'
intvolume: '        67'
isi: 1
issue: 1-2
language:
- iso: eng
month: '02'
oa_version: None
page: 16-26
publication: Israel Journal of Plant Sciences
publication_identifier:
  eissn:
  - 2223-8980
  issn:
  - 0792-9978
publication_status: published
publisher: Brill
quality_controlled: '1'
scopus_import: '1'
status: public
title: In vitro shoot growth and adventitious rooting of Wikstroemia gemmata depends
  on light quality
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 67
year: '2020'
...
---
_id: '7541'
abstract:
- lang: eng
  text: Semiconductor nanowires have been playing a crucial role in the development
    of nanoscale devices for the realization of spin qubits, Majorana fermions, single
    photon emitters, nanoprocessors, etc. The monolithic growth of site‐controlled
    nanowires is a prerequisite toward the next generation of devices that will require
    addressability and scalability. Here, combining top‐down nanofabrication and bottom‐up
    self‐assembly, the growth of Ge wires on prepatterned Si (001) substrates with
    controllable position, distance, length, and structure is reported. This is achieved
    by a novel growth process that uses a SiGe strain‐relaxation template and can
    be potentially generalized to other material combinations. Transport measurements
    show an electrically tunable spin–orbit coupling, with a spin–orbit length similar
    to that of III–V materials. Also, charge sensing between quantum dots in closely
    spaced wires is observed, which underlines their potential for the realization
    of advanced quantum devices. The reported results open a path toward scalable
    qubit devices using nanowires on silicon.
acknowledged_ssus:
- _id: NanoFab
- _id: M-Shop
acknowledgement: 'This work was supported by the National Key R&D Program of China
  (Grant Nos. 2016YFA0301701 and 2016YFA0300600), the NSFC (Grant Nos. 11574356, 11434010,
  and 11404252), the Strategic Priority Research Program of CAS (Grant No. XDB30000000),
  the ERC Starting Grant No. 335497, the FWF P32235 project, and the European Union''s
  Horizon 2020 research and innovation program under Grant Agreement #862046. This
  research was supported by the Scientific Service Units of IST Austria through resources
  provided by the MIBA Machine Shop and the nanofabrication facility. F.L. thanks
  support from DOE (Grant No. DE‐FG02‐04ER46148). H.H. thanks the Startup Funding
  from Xi''an Jiaotong University.'
article_number: '1906523'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Fei
  full_name: Gao, Fei
  last_name: Gao
- first_name: Jian-Huan
  full_name: Wang, Jian-Huan
  last_name: Wang
- first_name: Hannes
  full_name: Watzinger, Hannes
  id: 35DF8E50-F248-11E8-B48F-1D18A9856A87
  last_name: Watzinger
- first_name: Hao
  full_name: Hu, Hao
  last_name: Hu
- first_name: Marko J.
  full_name: Rančić, Marko J.
  last_name: Rančić
- first_name: Jie-Yin
  full_name: Zhang, Jie-Yin
  last_name: Zhang
- first_name: Ting
  full_name: Wang, Ting
  last_name: Wang
- first_name: Yuan
  full_name: Yao, Yuan
  last_name: Yao
- first_name: Gui-Lei
  full_name: Wang, Gui-Lei
  last_name: Wang
- first_name: Josip
  full_name: Kukucka, Josip
  id: 3F5D8856-F248-11E8-B48F-1D18A9856A87
  last_name: Kukucka
- first_name: Lada
  full_name: Vukušić, Lada
  id: 31E9F056-F248-11E8-B48F-1D18A9856A87
  last_name: Vukušić
  orcid: 0000-0003-2424-8636
- first_name: Christoph
  full_name: Kloeffel, Christoph
  last_name: Kloeffel
- first_name: Daniel
  full_name: Loss, Daniel
  last_name: Loss
- first_name: Feng
  full_name: Liu, Feng
  last_name: Liu
- first_name: Georgios
  full_name: Katsaros, Georgios
  id: 38DB5788-F248-11E8-B48F-1D18A9856A87
  last_name: Katsaros
  orcid: 0000-0001-8342-202X
- first_name: Jian-Jun
  full_name: Zhang, Jian-Jun
  last_name: Zhang
citation:
  ama: Gao F, Wang J-H, Watzinger H, et al. Site-controlled uniform Ge/Si hut wires
    with electrically tunable spin-orbit coupling. <i>Advanced Materials</i>. 2020;32(16).
    doi:<a href="https://doi.org/10.1002/adma.201906523">10.1002/adma.201906523</a>
  apa: Gao, F., Wang, J.-H., Watzinger, H., Hu, H., Rančić, M. J., Zhang, J.-Y., …
    Zhang, J.-J. (2020). Site-controlled uniform Ge/Si hut wires with electrically
    tunable spin-orbit coupling. <i>Advanced Materials</i>. Wiley. <a href="https://doi.org/10.1002/adma.201906523">https://doi.org/10.1002/adma.201906523</a>
  chicago: Gao, Fei, Jian-Huan Wang, Hannes Watzinger, Hao Hu, Marko J. Rančić, Jie-Yin
    Zhang, Ting Wang, et al. “Site-Controlled Uniform Ge/Si Hut Wires with Electrically
    Tunable Spin-Orbit Coupling.” <i>Advanced Materials</i>. Wiley, 2020. <a href="https://doi.org/10.1002/adma.201906523">https://doi.org/10.1002/adma.201906523</a>.
  ieee: F. Gao <i>et al.</i>, “Site-controlled uniform Ge/Si hut wires with electrically
    tunable spin-orbit coupling,” <i>Advanced Materials</i>, vol. 32, no. 16. Wiley,
    2020.
  ista: Gao F, Wang J-H, Watzinger H, Hu H, Rančić MJ, Zhang J-Y, Wang T, Yao Y, Wang
    G-L, Kukucka J, Vukušić L, Kloeffel C, Loss D, Liu F, Katsaros G, Zhang J-J. 2020.
    Site-controlled uniform Ge/Si hut wires with electrically tunable spin-orbit coupling.
    Advanced Materials. 32(16), 1906523.
  mla: Gao, Fei, et al. “Site-Controlled Uniform Ge/Si Hut Wires with Electrically
    Tunable Spin-Orbit Coupling.” <i>Advanced Materials</i>, vol. 32, no. 16, 1906523,
    Wiley, 2020, doi:<a href="https://doi.org/10.1002/adma.201906523">10.1002/adma.201906523</a>.
  short: F. Gao, J.-H. Wang, H. Watzinger, H. Hu, M.J. Rančić, J.-Y. Zhang, T. Wang,
    Y. Yao, G.-L. Wang, J. Kukucka, L. Vukušić, C. Kloeffel, D. Loss, F. Liu, G. Katsaros,
    J.-J. Zhang, Advanced Materials 32 (2020).
corr_author: '1'
date_created: 2020-02-28T09:47:00Z
date_published: 2020-04-23T00:00:00Z
date_updated: 2026-06-18T17:54:46Z
day: '23'
ddc:
- '530'
department:
- _id: GeKa
doi: 10.1002/adma.201906523
ec_funded: 1
external_id:
  isi:
  - '000516660900001'
  pmid:
  - '32105375'
file:
- access_level: open_access
  checksum: c622737dc295972065782558337124a2
  content_type: application/pdf
  creator: dernst
  date_created: 2020-11-20T10:11:35Z
  date_updated: 2020-11-20T10:11:35Z
  file_id: '8782'
  file_name: 2020_AdvancedMaterials_Gao.pdf
  file_size: 5242880
  relation: main_file
  success: 1
file_date_updated: 2020-11-20T10:11:35Z
has_accepted_license: '1'
intvolume: '        32'
isi: 1
issue: '16'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 25517E86-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '335497'
  name: Towards Spin qubits and Majorana fermions in Germanium self assembled hut-wires
- _id: 237B3DA4-32DE-11EA-91FC-C7463DDC885E
  call_identifier: FWF
  grant_number: P32235
  name: Towards scalable hut wire quantum devices
- _id: 237E5020-32DE-11EA-91FC-C7463DDC885E
  call_identifier: H2020
  grant_number: '862046'
  name: TOPOLOGICALLY PROTECTED AND SCALABLE QUANTUM BITS
publication: Advanced Materials
publication_identifier:
  issn:
  - 0935-9648
publication_status: published
publisher: Wiley
quality_controlled: '1'
related_material:
  record:
  - id: '9222'
    relation: research_data
    status: public
  - id: '7996'
    relation: dissertation_contains
    status: public
  - id: '17444'
    relation: other
    status: public
scopus_import: '1'
status: public
title: Site-controlled uniform Ge/Si hut wires with electrically tunable spin-orbit
  coupling
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 32
year: '2020'
...
---
_id: '7545'
abstract:
- lang: eng
  text: Neuronal activity often leads to alterations in gene expression and cellular
    architecture. The nematode Caenorhabditis elegans, owing to its compact translucent
    nervous system, is a powerful system in which to study conserved aspects of the
    development and plasticity of neuronal morphology. Here we focus on one pair of
    sensory neurons, termed URX, which the worm uses to sense and avoid high levels
    of environmental oxygen. Previous studies have reported that the URX neuron pair
    has variable branched endings at its dendritic sensory tip. By controlling oxygen
    levels and analyzing mutants, we found that these microtubule-rich branched endings
    grow over time as a consequence of neuronal activity in adulthood. We also find
    that the growth of these branches correlates with an increase in cellular sensitivity
    to particular ranges of oxygen that is observable in the behavior of older worms.
    Given the strengths of C. elegans as a model organism, URX may serve as a potent
    system for uncovering genes and mechanisms involved in activity-dependent morphological
    changes in neurons and possible adaptive changes in the aging nervous system.
article_processing_charge: No
article_type: original
author:
- first_name: Jesse A.
  full_name: Cohn, Jesse A.
  last_name: Cohn
- first_name: Elizabeth R.
  full_name: Cebul, Elizabeth R.
  last_name: Cebul
- first_name: Giulio
  full_name: Valperga, Giulio
  last_name: Valperga
- first_name: Lotti
  full_name: Brose, Lotti
  last_name: Brose
- first_name: Mario
  full_name: de Bono, Mario
  id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
  last_name: de Bono
  orcid: 0000-0001-8347-0443
- first_name: Maxwell G.
  full_name: Heiman, Maxwell G.
  last_name: Heiman
- first_name: Jonathan T.
  full_name: Pierce, Jonathan T.
  last_name: Pierce
citation:
  ama: Cohn JA, Cebul ER, Valperga G, et al. Long-term activity drives dendritic branch
    elaboration of a C. elegans sensory neuron. <i>Developmental Biology</i>. 2020;461(1):66-74.
    doi:<a href="https://doi.org/10.1016/j.ydbio.2020.01.005">10.1016/j.ydbio.2020.01.005</a>
  apa: Cohn, J. A., Cebul, E. R., Valperga, G., Brose, L., de Bono, M., Heiman, M.
    G., &#38; Pierce, J. T. (2020). Long-term activity drives dendritic branch elaboration
    of a C. elegans sensory neuron. <i>Developmental Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.ydbio.2020.01.005">https://doi.org/10.1016/j.ydbio.2020.01.005</a>
  chicago: Cohn, Jesse A., Elizabeth R. Cebul, Giulio Valperga, Lotti Brose, Mario
    de Bono, Maxwell G. Heiman, and Jonathan T. Pierce. “Long-Term Activity Drives
    Dendritic Branch Elaboration of a C. Elegans Sensory Neuron.” <i>Developmental
    Biology</i>. Elsevier, 2020. <a href="https://doi.org/10.1016/j.ydbio.2020.01.005">https://doi.org/10.1016/j.ydbio.2020.01.005</a>.
  ieee: J. A. Cohn <i>et al.</i>, “Long-term activity drives dendritic branch elaboration
    of a C. elegans sensory neuron,” <i>Developmental Biology</i>, vol. 461, no. 1.
    Elsevier, pp. 66–74, 2020.
  ista: Cohn JA, Cebul ER, Valperga G, Brose L, de Bono M, Heiman MG, Pierce JT. 2020.
    Long-term activity drives dendritic branch elaboration of a C. elegans sensory
    neuron. Developmental Biology. 461(1), 66–74.
  mla: Cohn, Jesse A., et al. “Long-Term Activity Drives Dendritic Branch Elaboration
    of a C. Elegans Sensory Neuron.” <i>Developmental Biology</i>, vol. 461, no. 1,
    Elsevier, 2020, pp. 66–74, doi:<a href="https://doi.org/10.1016/j.ydbio.2020.01.005">10.1016/j.ydbio.2020.01.005</a>.
  short: J.A. Cohn, E.R. Cebul, G. Valperga, L. Brose, M. de Bono, M.G. Heiman, J.T.
    Pierce, Developmental Biology 461 (2020) 66–74.
date_created: 2020-02-28T10:38:32Z
date_published: 2020-05-01T00:00:00Z
date_updated: 2021-01-12T08:14:06Z
day: '01'
doi: 10.1016/j.ydbio.2020.01.005
extern: '1'
intvolume: '       461'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1101/685339
month: '05'
oa: 1
oa_version: Preprint
page: 66-74
publication: Developmental Biology
publication_identifier:
  issn:
  - 0012-1606
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Long-term activity drives dendritic branch elaboration of a C. elegans sensory
  neuron
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 461
year: '2020'
...
---
_id: '7546'
abstract:
- lang: eng
  text: The extent to which behavior is shaped by experience varies between individuals.
    Genetic differences contribute to this variation, but the neural mechanisms are
    not understood. Here, we dissect natural variation in the behavioral flexibility
    of two Caenorhabditis elegans wild strains. In one strain, a memory of exposure
    to 21% O2 suppresses CO2-evoked locomotory arousal; in the other, CO2 evokes arousal
    regardless of previous O2 experience. We map that variation to a polymorphic dendritic
    scaffold protein, ARCP-1, expressed in sensory neurons. ARCP-1 binds the Ca2+-dependent
    phosphodiesterase PDE-1 and co-localizes PDE-1 with molecular sensors for CO2
    at dendritic ends. Reducing ARCP-1 or PDE-1 activity promotes CO2 escape by altering
    neuropeptide expression in the BAG CO2 sensors. Variation in ARCP-1 alters behavioral
    plasticity in multiple paradigms. Our findings are reminiscent of genetic accommodation,
    an evolutionary process by which phenotypic flexibility in response to environmental
    variation is reset by genetic change.
article_processing_charge: No
article_type: original
author:
- first_name: Isabel
  full_name: Beets, Isabel
  last_name: Beets
- first_name: Gaotian
  full_name: Zhang, Gaotian
  last_name: Zhang
- first_name: Lorenz A.
  full_name: Fenk, Lorenz A.
  last_name: Fenk
- first_name: Changchun
  full_name: Chen, Changchun
  last_name: Chen
- first_name: Geoffrey M.
  full_name: Nelson, Geoffrey M.
  last_name: Nelson
- first_name: Marie-Anne
  full_name: Félix, Marie-Anne
  last_name: Félix
- first_name: Mario
  full_name: de Bono, Mario
  id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
  last_name: de Bono
  orcid: 0000-0001-8347-0443
citation:
  ama: Beets I, Zhang G, Fenk LA, et al. Natural variation in a dendritic scaffold
    protein remodels experience-dependent plasticity by altering neuropeptide expression.
    <i>Neuron</i>. 2020;105(1):106-121.e10. doi:<a href="https://doi.org/10.1016/j.neuron.2019.10.001">10.1016/j.neuron.2019.10.001</a>
  apa: Beets, I., Zhang, G., Fenk, L. A., Chen, C., Nelson, G. M., Félix, M.-A., &#38;
    de Bono, M. (2020). Natural variation in a dendritic scaffold protein remodels
    experience-dependent plasticity by altering neuropeptide expression. <i>Neuron</i>.
    Cell Press. <a href="https://doi.org/10.1016/j.neuron.2019.10.001">https://doi.org/10.1016/j.neuron.2019.10.001</a>
  chicago: Beets, Isabel, Gaotian Zhang, Lorenz A. Fenk, Changchun Chen, Geoffrey
    M. Nelson, Marie-Anne Félix, and Mario de Bono. “Natural Variation in a Dendritic
    Scaffold Protein Remodels Experience-Dependent Plasticity by Altering Neuropeptide
    Expression.” <i>Neuron</i>. Cell Press, 2020. <a href="https://doi.org/10.1016/j.neuron.2019.10.001">https://doi.org/10.1016/j.neuron.2019.10.001</a>.
  ieee: I. Beets <i>et al.</i>, “Natural variation in a dendritic scaffold protein
    remodels experience-dependent plasticity by altering neuropeptide expression,”
    <i>Neuron</i>, vol. 105, no. 1. Cell Press, p. 106–121.e10, 2020.
  ista: Beets I, Zhang G, Fenk LA, Chen C, Nelson GM, Félix M-A, de Bono M. 2020.
    Natural variation in a dendritic scaffold protein remodels experience-dependent
    plasticity by altering neuropeptide expression. Neuron. 105(1), 106–121.e10.
  mla: Beets, Isabel, et al. “Natural Variation in a Dendritic Scaffold Protein Remodels
    Experience-Dependent Plasticity by Altering Neuropeptide Expression.” <i>Neuron</i>,
    vol. 105, no. 1, Cell Press, 2020, p. 106–121.e10, doi:<a href="https://doi.org/10.1016/j.neuron.2019.10.001">10.1016/j.neuron.2019.10.001</a>.
  short: I. Beets, G. Zhang, L.A. Fenk, C. Chen, G.M. Nelson, M.-A. Félix, M. de Bono,
    Neuron 105 (2020) 106–121.e10.
corr_author: '1'
date_created: 2020-02-28T10:43:39Z
date_published: 2020-01-08T00:00:00Z
date_updated: 2024-10-09T20:59:20Z
day: '08'
ddc:
- '570'
department:
- _id: MaDe
doi: 10.1016/j.neuron.2019.10.001
external_id:
  isi:
  - '000507341300012'
  pmid:
  - '31757604'
file:
- access_level: open_access
  checksum: 799bfd297a008753a688b30d3958fa48
  content_type: application/pdf
  creator: dernst
  date_created: 2020-03-02T15:43:57Z
  date_updated: 2020-07-14T12:48:00Z
  file_id: '7558'
  file_name: 2020_Neuron_Beets.pdf
  file_size: 3294066
  relation: main_file
file_date_updated: 2020-07-14T12:48:00Z
has_accepted_license: '1'
intvolume: '       105'
isi: 1
issue: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 106-121.e10
pmid: 1
publication: Neuron
publication_identifier:
  issn:
  - 0896-6273
publication_status: published
publisher: Cell Press
quality_controlled: '1'
status: public
title: Natural variation in a dendritic scaffold protein remodels experience-dependent
  plasticity by altering neuropeptide expression
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 105
year: '2020'
...
---
_id: '7554'
abstract:
- lang: eng
  text: Slicing a Voronoi tessellation in ${R}^n$ with a $k$-plane gives a $k$-dimensional
    weighted Voronoi tessellation, also known as a power diagram or Laguerre tessellation.
    Mapping every simplex of the dual weighted Delaunay mosaic to the radius of the
    smallest empty circumscribed sphere whose center lies in the $k$-plane gives a
    generalized discrete Morse function. Assuming the Voronoi tessellation is generated
    by a Poisson point process in ${R}^n$, we study the expected number of simplices
    in the $k$-dimensional weighted Delaunay mosaic as well as the expected number
    of intervals of the Morse function, both as functions of a radius threshold. As
    a by-product, we obtain a new proof for the expected number of connected components
    (clumps) in a line section of a circular Boolean model in ${R}^n$.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Anton
  full_name: Nikitenko, Anton
  id: 3E4FF1BA-F248-11E8-B48F-1D18A9856A87
  last_name: Nikitenko
  orcid: 0000-0002-0659-3201
citation:
  ama: Edelsbrunner H, Nikitenko A. Weighted Poisson–Delaunay mosaics. <i>Theory of
    Probability and its Applications</i>. 2020;64(4):595-614. doi:<a href="https://doi.org/10.1137/S0040585X97T989726">10.1137/S0040585X97T989726</a>
  apa: Edelsbrunner, H., &#38; Nikitenko, A. (2020). Weighted Poisson–Delaunay mosaics.
    <i>Theory of Probability and Its Applications</i>. SIAM. <a href="https://doi.org/10.1137/S0040585X97T989726">https://doi.org/10.1137/S0040585X97T989726</a>
  chicago: Edelsbrunner, Herbert, and Anton Nikitenko. “Weighted Poisson–Delaunay
    Mosaics.” <i>Theory of Probability and Its Applications</i>. SIAM, 2020. <a href="https://doi.org/10.1137/S0040585X97T989726">https://doi.org/10.1137/S0040585X97T989726</a>.
  ieee: H. Edelsbrunner and A. Nikitenko, “Weighted Poisson–Delaunay mosaics,” <i>Theory
    of Probability and its Applications</i>, vol. 64, no. 4. SIAM, pp. 595–614, 2020.
  ista: Edelsbrunner H, Nikitenko A. 2020. Weighted Poisson–Delaunay mosaics. Theory
    of Probability and its Applications. 64(4), 595–614.
  mla: Edelsbrunner, Herbert, and Anton Nikitenko. “Weighted Poisson–Delaunay Mosaics.”
    <i>Theory of Probability and Its Applications</i>, vol. 64, no. 4, SIAM, 2020,
    pp. 595–614, doi:<a href="https://doi.org/10.1137/S0040585X97T989726">10.1137/S0040585X97T989726</a>.
  short: H. Edelsbrunner, A. Nikitenko, Theory of Probability and Its Applications
    64 (2020) 595–614.
date_created: 2020-03-01T23:00:39Z
date_published: 2020-02-13T00:00:00Z
date_updated: 2025-07-10T11:54:44Z
day: '13'
department:
- _id: HeEd
doi: 10.1137/S0040585X97T989726
ec_funded: 1
external_id:
  arxiv:
  - '1705.08735'
  isi:
  - '000551393100007'
intvolume: '        64'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1705.08735
month: '02'
oa: 1
oa_version: Preprint
page: 595-614
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
publication: Theory of Probability and its Applications
publication_identifier:
  eissn:
  - 1095-7219
  issn:
  - 0040-585X
publication_status: published
publisher: SIAM
quality_controlled: '1'
scopus_import: '1'
status: public
title: Weighted Poisson–Delaunay mosaics
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 64
year: '2020'
...
---
_id: '9878'
article_processing_charge: No
author:
- first_name: Chitrak
  full_name: Gupta, Chitrak
  last_name: Gupta
- first_name: Umesh
  full_name: Khaniya, Umesh
  last_name: Khaniya
- first_name: Chun Kit
  full_name: Chan, Chun Kit
  last_name: Chan
- first_name: Francois
  full_name: Dehez, Francois
  last_name: Dehez
- first_name: Mrinal
  full_name: Shekhar, Mrinal
  last_name: Shekhar
- first_name: M.R.
  full_name: Gunner, M.R.
  last_name: Gunner
- first_name: Leonid A
  full_name: Sazanov, Leonid A
  id: 338D39FE-F248-11E8-B48F-1D18A9856A87
  last_name: Sazanov
  orcid: 0000-0002-0977-7989
- first_name: Christophe
  full_name: Chipot, Christophe
  last_name: Chipot
- first_name: Abhishek
  full_name: Singharoy, Abhishek
  last_name: Singharoy
citation:
  ama: Gupta C, Khaniya U, Chan CK, et al. Movies. 2020. doi:<a href="https://doi.org/10.1021/jacs.9b13450.s002">10.1021/jacs.9b13450.s002</a>
  apa: Gupta, C., Khaniya, U., Chan, C. K., Dehez, F., Shekhar, M., Gunner, M. R.,
    … Singharoy, A. (2020). Movies. American Chemical Society. <a href="https://doi.org/10.1021/jacs.9b13450.s002">https://doi.org/10.1021/jacs.9b13450.s002</a>
  chicago: Gupta, Chitrak, Umesh Khaniya, Chun Kit Chan, Francois Dehez, Mrinal Shekhar,
    M.R. Gunner, Leonid A Sazanov, Christophe Chipot, and Abhishek Singharoy. “Movies.”
    American Chemical Society, 2020. <a href="https://doi.org/10.1021/jacs.9b13450.s002">https://doi.org/10.1021/jacs.9b13450.s002</a>.
  ieee: C. Gupta <i>et al.</i>, “Movies.” American Chemical Society, 2020.
  ista: Gupta C, Khaniya U, Chan CK, Dehez F, Shekhar M, Gunner MR, Sazanov LA, Chipot
    C, Singharoy A. 2020. Movies, American Chemical Society, <a href="https://doi.org/10.1021/jacs.9b13450.s002">10.1021/jacs.9b13450.s002</a>.
  mla: Gupta, Chitrak, et al. <i>Movies</i>. American Chemical Society, 2020, doi:<a
    href="https://doi.org/10.1021/jacs.9b13450.s002">10.1021/jacs.9b13450.s002</a>.
  short: C. Gupta, U. Khaniya, C.K. Chan, F. Dehez, M. Shekhar, M.R. Gunner, L.A.
    Sazanov, C. Chipot, A. Singharoy, (2020).
date_created: 2021-08-11T09:18:54Z
date_published: 2020-05-20T00:00:00Z
date_updated: 2025-07-10T11:55:01Z
day: '20'
department:
- _id: LeSa
doi: 10.1021/jacs.9b13450.s002
month: '05'
oa_version: Published Version
publisher: American Chemical Society
related_material:
  record:
  - id: '8040'
    relation: used_in_publication
    status: public
status: public
title: Movies
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2020'
...
---
_id: '17444'
abstract:
- lang: eng
  text: The first wafer-scale growth of site-controlled Ge/Si nanowires is reported
    by Georgios Katsaros, Jian-Jun Zhang, and co-workers in article number 1906523.
    They are highly uniform and their position, distance, length, and even square-
    or L-shaped structures can all be precisely controlled. The electrically tunable
    spin-orbit coupling demonstrated by transport measurements and the charge sensing
    between quantum dots in closely spaced wires open a path toward scalable qubit
    devices using nanowires on silicon.
article_number: '2070122'
article_processing_charge: No
author:
- first_name: Fei
  full_name: Gao, Fei
  last_name: Gao
- first_name: Jian‐Huan
  full_name: Wang, Jian‐Huan
  last_name: Wang
- first_name: Hannes
  full_name: Watzinger, Hannes
  id: 35DF8E50-F248-11E8-B48F-1D18A9856A87
  last_name: Watzinger
- first_name: Hao
  full_name: Hu, Hao
  last_name: Hu
- first_name: Marko J.
  full_name: Rančić, Marko J.
  last_name: Rančić
- first_name: Jie‐Yin
  full_name: Zhang, Jie‐Yin
  last_name: Zhang
- first_name: Ting
  full_name: Wang, Ting
  last_name: Wang
- first_name: Yuan
  full_name: Yao, Yuan
  last_name: Yao
- first_name: Gui‐Lei
  full_name: Wang, Gui‐Lei
  last_name: Wang
- first_name: Josip
  full_name: Kukucka, Josip
  id: 3F5D8856-F248-11E8-B48F-1D18A9856A87
  last_name: Kukucka
- first_name: Lada
  full_name: Vukušić, Lada
  id: 31E9F056-F248-11E8-B48F-1D18A9856A87
  last_name: Vukušić
  orcid: 0000-0003-2424-8636
- first_name: Christoph
  full_name: Kloeffel, Christoph
  last_name: Kloeffel
- first_name: Daniel
  full_name: Loss, Daniel
  last_name: Loss
- first_name: Feng
  full_name: Liu, Feng
  last_name: Liu
- first_name: Georgios
  full_name: Katsaros, Georgios
  id: 38DB5788-F248-11E8-B48F-1D18A9856A87
  last_name: Katsaros
  orcid: 0000-0001-8342-202X
- first_name: Jian‐Jun
  full_name: Zhang, Jian‐Jun
  last_name: Zhang
citation:
  ama: 'Gao F, Wang J, Watzinger H, et al. <i>Nanowires: Site‐controlled Uniform Ge/Si
    Hut Wires with Electrically Tunable Spin–Orbit Coupling (Adv. Mater. 16/2020)</i>.
    Vol 32. Wiley; 2020. doi:<a href="https://doi.org/10.1002/adma.202070122">10.1002/adma.202070122</a>'
  apa: 'Gao, F., Wang, J., Watzinger, H., Hu, H., Rančić, M. J., Zhang, J., … Zhang,
    J. (2020). <i>Nanowires: Site‐controlled uniform Ge/Si Hut wires with electrically
    tunable spin–orbit coupling (Adv. Mater. 16/2020)</i>. <i>Advanced Materials</i>
    (Vol. 32). Wiley. <a href="https://doi.org/10.1002/adma.202070122">https://doi.org/10.1002/adma.202070122</a>'
  chicago: 'Gao, Fei, Jian‐Huan Wang, Hannes Watzinger, Hao Hu, Marko J. Rančić, Jie‐Yin
    Zhang, Ting Wang, et al. <i>Nanowires: Site‐controlled Uniform Ge/Si Hut Wires
    with Electrically Tunable Spin–Orbit Coupling (Adv. Mater. 16/2020)</i>. <i>Advanced
    Materials</i>. Vol. 32. Wiley, 2020. <a href="https://doi.org/10.1002/adma.202070122">https://doi.org/10.1002/adma.202070122</a>.'
  ieee: 'F. Gao <i>et al.</i>, <i>Nanowires: Site‐controlled uniform Ge/Si Hut wires
    with electrically tunable spin–orbit coupling (Adv. Mater. 16/2020)</i>, vol.
    32, no. 16. Wiley, 2020.'
  ista: 'Gao F, Wang J, Watzinger H, Hu H, Rančić MJ, Zhang J, Wang T, Yao Y, Wang
    G, Kukucka J, Vukušić L, Kloeffel C, Loss D, Liu F, Katsaros G, Zhang J. 2020.
    Nanowires: Site‐controlled uniform Ge/Si Hut wires with electrically tunable spin–orbit
    coupling (Adv. Mater. 16/2020), Wiley,p.'
  mla: 'Gao, Fei, et al. “Nanowires: Site‐controlled Uniform Ge/Si Hut Wires with
    Electrically Tunable Spin–Orbit Coupling (Adv. Mater. 16/2020).” <i>Advanced Materials</i>,
    vol. 32, no. 16, 2070122, Wiley, 2020, doi:<a href="https://doi.org/10.1002/adma.202070122">10.1002/adma.202070122</a>.'
  short: 'F. Gao, J. Wang, H. Watzinger, H. Hu, M.J. Rančić, J. Zhang, T. Wang, Y.
    Yao, G. Wang, J. Kukucka, L. Vukušić, C. Kloeffel, D. Loss, F. Liu, G. Katsaros,
    J. Zhang, Nanowires: Site‐controlled Uniform Ge/Si Hut Wires with Electrically
    Tunable Spin–Orbit Coupling (Adv. Mater. 16/2020), Wiley, 2020.'
date_created: 2024-08-20T08:22:42Z
date_published: 2020-04-23T00:00:00Z
date_updated: 2026-06-18T17:54:47Z
day: '23'
ddc:
- '530'
department:
- _id: GeKa
doi: 10.1002/adma.202070122
intvolume: '        32'
issue: '16'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1002/adma.202070122
month: '04'
oa: 1
oa_version: Published Version
publication: Advanced Materials
publication_identifier:
  eissn:
  - 1521-4095
  issn:
  - 0935-9648
publication_status: published
publisher: Wiley
quality_controlled: '1'
related_material:
  record:
  - id: '7541'
    relation: other
    status: public
status: public
title: 'Nanowires: Site‐controlled uniform Ge/Si Hut wires with electrically tunable
  spin–orbit coupling (Adv. Mater. 16/2020)'
type: other_academic_publication
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 32
year: '2020'
...
---
_id: '17524'
abstract:
- lang: eng
  text: The variability of quasars across multiple wavelengths is a useful probe of
    physical conditions in active galactic nuclei. In particular, variable accretion
    rates, instabilities, and reverberation effects in the accretion disc of a supermassive
    black hole are expected to produce correlated flux variations in ultraviolet (UV)
    and optical bands. Recent work has further argued that binary quasars should exhibit
    strongly correlated UV and optical periodicities. Strong UV–optical correlations
    have indeed been established in small samples of (N ≲ 30) quasars with well-sampled
    light curves, and have extended the ‘bluer-when-brighter’ trend previously found
    within the optical bands. Here, we further test the nature of quasar variability
    by examining the observed-frame UV–optical correlations among bright quasars extracted
    from the Half Million Quasars (HMQ) catalogue. We identified a large sample of
    1315 quasars in HMQ with overlapping UV and optical light curves from the Galaxy
    Evolution Explorer and the Catalina Real-time Transient Survey, respectively.
    We find that strong correlations exist in this much larger sample, but we rule
    out, at ∼95 per cent confidence, the simple hypothesis that the intrinsic UV and
    optical variations of all quasars are fully correlated. Our results therefore
    imply the existence of physical mechanism(s) that can generate uncorrelated optical
    and UV flux variations.
article_processing_charge: No
article_type: original
author:
- first_name: Chengcheng
  full_name: Xin, Chengcheng
  last_name: Xin
- first_name: Maria
  full_name: Charisi, Maria
  last_name: Charisi
- first_name: Zoltán
  full_name: Haiman, Zoltán
  id: 7c006e8c-cc0d-11ee-8322-cb904ef76f36
  last_name: Haiman
- first_name: David
  full_name: Schiminovich, David
  last_name: Schiminovich
citation:
  ama: Xin C, Charisi M, Haiman Z, Schiminovich D. Correlation between optical and
    UV variability of a large sample of quasars. <i>Monthly Notices of the Royal Astronomical
    Society</i>. 2020;495(1):1403-1413. doi:<a href="https://doi.org/10.1093/mnras/staa1258">10.1093/mnras/staa1258</a>
  apa: Xin, C., Charisi, M., Haiman, Z., &#38; Schiminovich, D. (2020). Correlation
    between optical and UV variability of a large sample of quasars. <i>Monthly Notices
    of the Royal Astronomical Society</i>. Oxford University Press. <a href="https://doi.org/10.1093/mnras/staa1258">https://doi.org/10.1093/mnras/staa1258</a>
  chicago: Xin, Chengcheng, Maria Charisi, Zoltán Haiman, and David Schiminovich.
    “Correlation between Optical and UV Variability of a Large Sample of Quasars.”
    <i>Monthly Notices of the Royal Astronomical Society</i>. Oxford University Press,
    2020. <a href="https://doi.org/10.1093/mnras/staa1258">https://doi.org/10.1093/mnras/staa1258</a>.
  ieee: C. Xin, M. Charisi, Z. Haiman, and D. Schiminovich, “Correlation between optical
    and UV variability of a large sample of quasars,” <i>Monthly Notices of the Royal
    Astronomical Society</i>, vol. 495, no. 1. Oxford University Press, pp. 1403–1413,
    2020.
  ista: Xin C, Charisi M, Haiman Z, Schiminovich D. 2020. Correlation between optical
    and UV variability of a large sample of quasars. Monthly Notices of the Royal
    Astronomical Society. 495(1), 1403–1413.
  mla: Xin, Chengcheng, et al. “Correlation between Optical and UV Variability of
    a Large Sample of Quasars.” <i>Monthly Notices of the Royal Astronomical Society</i>,
    vol. 495, no. 1, Oxford University Press, 2020, pp. 1403–13, doi:<a href="https://doi.org/10.1093/mnras/staa1258">10.1093/mnras/staa1258</a>.
  short: C. Xin, M. Charisi, Z. Haiman, D. Schiminovich, Monthly Notices of the Royal
    Astronomical Society 495 (2020) 1403–1413.
date_created: 2024-09-05T09:27:32Z
date_published: 2020-05-07T00:00:00Z
date_updated: 2024-09-11T08:08:21Z
day: '07'
doi: 10.1093/mnras/staa1258
extern: '1'
intvolume: '       495'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1093/mnras/staa1258
month: '05'
oa: 1
oa_version: Published Version
page: 1403-1413
publication: Monthly Notices of the Royal Astronomical Society
publication_identifier:
  issn:
  - 0035-8711
  - 1365-2966
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Correlation between optical and UV variability of a large sample of quasars
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 495
year: '2020'
...
