---
_id: '8184'
abstract:
- lang: eng
  text: "Denote by ∆N the N-dimensional simplex. A map f : ∆N → Rd is an almost r-embedding
    if fσ1∩. . .∩fσr = ∅ whenever σ1, . . . , σr are pairwise disjoint faces. A counterexample
    to the topological Tverberg conjecture asserts that if r is not a prime power
    and d ≥ 2r + 1, then there is an almost r-embedding ∆(d+1)(r−1) → Rd. This was
    improved by Blagojevi´c–Frick–Ziegler using a simple construction of higher-dimensional
    counterexamples by taking k-fold join power of lower-dimensional ones. We improve
    this further (for d large compared to r): If r is not a prime power and N := (d+
    1)r−r l\r\nd + 2 r + 1 m−2, then there is an almost r-embedding ∆N → Rd. For the
    r-fold van Kampen–Flores conjecture we also produce counterexamples which are
    stronger than previously known. Our proof is based on generalizations of the Mabillard–Wagner
    theorem on construction of almost r-embeddings from equivariant maps, and of the
    Ozaydin theorem on existence of equivariant maps. "
acknowledgement: We would like to thank F. Frick for helpful discussions
article_number: '1908.08731'
article_processing_charge: No
arxiv: 1
author:
- first_name: Sergey
  full_name: Avvakumov, Sergey
  id: 3827DAC8-F248-11E8-B48F-1D18A9856A87
  last_name: Avvakumov
  orcid: 0000-0002-7840-5062
- first_name: R.
  full_name: Karasev, R.
  last_name: Karasev
- first_name: A.
  full_name: Skopenkov, A.
  last_name: Skopenkov
citation:
  ama: Avvakumov S, Karasev R, Skopenkov A. Stronger counterexamples to the topological
    Tverberg conjecture. <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/arXiv.1908.08731">10.48550/arXiv.1908.08731</a>
  apa: Avvakumov, S., Karasev, R., &#38; Skopenkov, A. (n.d.). Stronger counterexamples
    to the topological Tverberg conjecture. <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.1908.08731">https://doi.org/10.48550/arXiv.1908.08731</a>
  chicago: Avvakumov, Sergey, R. Karasev, and A. Skopenkov. “Stronger Counterexamples
    to the Topological Tverberg Conjecture.” <i>ArXiv</i>, n.d. <a href="https://doi.org/10.48550/arXiv.1908.08731">https://doi.org/10.48550/arXiv.1908.08731</a>.
  ieee: S. Avvakumov, R. Karasev, and A. Skopenkov, “Stronger counterexamples to the
    topological Tverberg conjecture,” <i>arXiv</i>. .
  ista: Avvakumov S, Karasev R, Skopenkov A. Stronger counterexamples to the topological
    Tverberg conjecture. arXiv, 1908.08731.
  mla: Avvakumov, Sergey, et al. “Stronger Counterexamples to the Topological Tverberg
    Conjecture.” <i>ArXiv</i>, 1908.08731, doi:<a href="https://doi.org/10.48550/arXiv.1908.08731">10.48550/arXiv.1908.08731</a>.
  short: S. Avvakumov, R. Karasev, A. Skopenkov, ArXiv (n.d.).
date_created: 2020-07-30T10:45:34Z
date_published: 2019-08-23T00:00:00Z
date_updated: 2026-04-08T07:25:54Z
day: '23'
department:
- _id: UlWa
doi: 10.48550/arXiv.1908.08731
external_id:
  arxiv:
  - '1908.08731'
  isi:
  - '000986519600004'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1908.08731
month: '08'
oa: 1
oa_version: Preprint
project:
- _id: 26611F5C-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P31312
  name: Algorithms for Embeddings and Homotopy Theory
publication: arXiv
publication_status: draft
related_material:
  record:
  - id: '8156'
    relation: dissertation_contains
    status: public
status: public
title: Stronger counterexamples to the topological Tverberg conjecture
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2019'
...
---
_id: '8185'
abstract:
- lang: eng
  text: "In this paper we study envy-free division problems. The classical approach
    to some of such problems, used by David Gale, reduces to considering continuous
    maps of a simplex to itself and finding sufficient conditions when this map hits
    the center of the simplex. The mere continuity is not sufficient for such a conclusion,
    the usual assumption (for example, in the Knaster--Kuratowski--Mazurkiewicz and
    the Gale theorem) is a certain boundary condition.\r\n  We follow Erel Segal-Halevi,
    Fr\\'ed\\'eric Meunier, and Shira Zerbib, and replace the boundary condition by
    another assumption, which has the economic meaning of possibility for a player
    to prefer an empty part in the segment\r\npartition problem. We solve the problem
    positively when $n$, the number of players that divide the segment, is a prime
    power, and we provide counterexamples for every $n$ which is not a prime power.
    We also provide counterexamples relevant to a wider class of fair or envy-free
    partition problems when $n$ is odd and not a prime power."
article_number: '1907.11183'
article_processing_charge: No
arxiv: 1
author:
- first_name: Sergey
  full_name: Avvakumov, Sergey
  id: 3827DAC8-F248-11E8-B48F-1D18A9856A87
  last_name: Avvakumov
  orcid: 0000-0002-7840-5062
- first_name: Roman
  full_name: Karasev, Roman
  last_name: Karasev
citation:
  ama: Avvakumov S, Karasev R. Envy-free division using mapping degree. <i>arXiv</i>.
    doi:<a href="https://doi.org/10.48550/arXiv.1907.11183">10.48550/arXiv.1907.11183</a>
  apa: Avvakumov, S., &#38; Karasev, R. (n.d.). Envy-free division using mapping degree.
    <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.1907.11183">https://doi.org/10.48550/arXiv.1907.11183</a>
  chicago: Avvakumov, Sergey, and Roman Karasev. “Envy-Free Division Using Mapping
    Degree.” <i>ArXiv</i>, n.d. <a href="https://doi.org/10.48550/arXiv.1907.11183">https://doi.org/10.48550/arXiv.1907.11183</a>.
  ieee: S. Avvakumov and R. Karasev, “Envy-free division using mapping degree,” <i>arXiv</i>.
    .
  ista: Avvakumov S, Karasev R. Envy-free division using mapping degree. arXiv, 1907.11183.
  mla: Avvakumov, Sergey, and Roman Karasev. “Envy-Free Division Using Mapping Degree.”
    <i>ArXiv</i>, 1907.11183, doi:<a href="https://doi.org/10.48550/arXiv.1907.11183">10.48550/arXiv.1907.11183</a>.
  short: S. Avvakumov, R. Karasev, ArXiv (n.d.).
corr_author: '1'
date_created: 2020-07-30T10:45:51Z
date_published: 2019-07-25T00:00:00Z
date_updated: 2026-04-08T07:25:54Z
day: '25'
department:
- _id: UlWa
doi: 10.48550/arXiv.1907.11183
external_id:
  arxiv:
  - '1907.11183'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1907.11183
month: '07'
oa: 1
oa_version: Preprint
project:
- _id: 26611F5C-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P31312
  name: Algorithms for Embeddings and Homotopy Theory
publication: arXiv
publication_status: draft
related_material:
  link:
  - relation: later_version
    url: https://doi.org/10.1112/mtk.12059
  record:
  - id: '8156'
    relation: dissertation_contains
    status: public
status: public
title: Envy-free division using mapping degree
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2019'
...
---
_id: '7197'
abstract:
- lang: eng
  text: During bacterial cell division, the tubulin-homolog FtsZ forms a ring-like
    structure at the center of the cell. This Z-ring not only organizes the division
    machinery, but treadmilling of FtsZ filaments was also found to play a key role
    in distributing proteins at the division site. What regulates the architecture,
    dynamics and stability of the Z-ring is currently unknown, but FtsZ-associated
    proteins are known to play an important role. Here, using an in vitro reconstitution
    approach, we studied how the well-conserved protein ZapA affects FtsZ treadmilling
    and filament organization into large-scale patterns. Using high-resolution fluorescence
    microscopy and quantitative image analysis, we found that ZapA cooperatively increases
    the spatial order of the filament network, but binds only transiently to FtsZ
    filaments and has no effect on filament length and treadmilling velocity. Together,
    our data provides a model for how FtsZ-associated proteins can increase the precision
    and stability of the bacterial cell division machinery in a switch-like manner.
acknowledged_ssus:
- _id: LifeSc
- _id: Bio
article_number: '5744'
article_processing_charge: No
article_type: original
author:
- first_name: Paulo R
  full_name: Dos Santos Caldas, Paulo R
  id: 38FCDB4C-F248-11E8-B48F-1D18A9856A87
  last_name: Dos Santos Caldas
  orcid: 0000-0001-6730-4461
- first_name: Maria D
  full_name: Lopez Pelegrin, Maria D
  id: 319AA9CE-F248-11E8-B48F-1D18A9856A87
  last_name: Lopez Pelegrin
- first_name: Daniel J. G.
  full_name: Pearce, Daniel J. G.
  last_name: Pearce
- first_name: Nazmi B
  full_name: Budanur, Nazmi B
  id: 3EA1010E-F248-11E8-B48F-1D18A9856A87
  last_name: Budanur
  orcid: 0000-0003-0423-5010
- first_name: Jan
  full_name: Brugués, Jan
  last_name: Brugués
- first_name: Martin
  full_name: Loose, Martin
  id: 462D4284-F248-11E8-B48F-1D18A9856A87
  last_name: Loose
  orcid: 0000-0001-7309-9724
citation:
  ama: Dos Santos Caldas PR, Lopez Pelegrin MD, Pearce DJG, Budanur NB, Brugués J,
    Loose M. Cooperative ordering of treadmilling filaments in cytoskeletal networks
    of FtsZ and its crosslinker ZapA. <i>Nature Communications</i>. 2019;10. doi:<a
    href="https://doi.org/10.1038/s41467-019-13702-4">10.1038/s41467-019-13702-4</a>
  apa: Dos Santos Caldas, P. R., Lopez Pelegrin, M. D., Pearce, D. J. G., Budanur,
    N. B., Brugués, J., &#38; Loose, M. (2019). Cooperative ordering of treadmilling
    filaments in cytoskeletal networks of FtsZ and its crosslinker ZapA. <i>Nature
    Communications</i>. Springer Nature. <a href="https://doi.org/10.1038/s41467-019-13702-4">https://doi.org/10.1038/s41467-019-13702-4</a>
  chicago: Dos Santos Caldas, Paulo R, Maria D Lopez Pelegrin, Daniel J. G. Pearce,
    Nazmi B Budanur, Jan Brugués, and Martin Loose. “Cooperative Ordering of Treadmilling
    Filaments in Cytoskeletal Networks of FtsZ and Its Crosslinker ZapA.” <i>Nature
    Communications</i>. Springer Nature, 2019. <a href="https://doi.org/10.1038/s41467-019-13702-4">https://doi.org/10.1038/s41467-019-13702-4</a>.
  ieee: P. R. Dos Santos Caldas, M. D. Lopez Pelegrin, D. J. G. Pearce, N. B. Budanur,
    J. Brugués, and M. Loose, “Cooperative ordering of treadmilling filaments in cytoskeletal
    networks of FtsZ and its crosslinker ZapA,” <i>Nature Communications</i>, vol.
    10. Springer Nature, 2019.
  ista: Dos Santos Caldas PR, Lopez Pelegrin MD, Pearce DJG, Budanur NB, Brugués J,
    Loose M. 2019. Cooperative ordering of treadmilling filaments in cytoskeletal
    networks of FtsZ and its crosslinker ZapA. Nature Communications. 10, 5744.
  mla: Dos Santos Caldas, Paulo R., et al. “Cooperative Ordering of Treadmilling Filaments
    in Cytoskeletal Networks of FtsZ and Its Crosslinker ZapA.” <i>Nature Communications</i>,
    vol. 10, 5744, Springer Nature, 2019, doi:<a href="https://doi.org/10.1038/s41467-019-13702-4">10.1038/s41467-019-13702-4</a>.
  short: P.R. Dos Santos Caldas, M.D. Lopez Pelegrin, D.J.G. Pearce, N.B. Budanur,
    J. Brugués, M. Loose, Nature Communications 10 (2019).
corr_author: '1'
date_created: 2019-12-20T12:22:57Z
date_published: 2019-12-17T00:00:00Z
date_updated: 2026-04-08T07:26:30Z
day: '17'
ddc:
- '570'
department:
- _id: MaLo
- _id: BjHo
doi: 10.1038/s41467-019-13702-4
ec_funded: 1
external_id:
  isi:
  - '000503009300001'
file:
- access_level: open_access
  checksum: a1b44b427ba341383197790d0e8789fa
  content_type: application/pdf
  creator: dernst
  date_created: 2019-12-23T07:34:56Z
  date_updated: 2020-07-14T12:47:53Z
  file_id: '7208'
  file_name: 2019_NatureComm_Caldas.pdf
  file_size: 8488733
  relation: main_file
file_date_updated: 2020-07-14T12:47:53Z
has_accepted_license: '1'
intvolume: '        10'
isi: 1
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '12'
oa: 1
oa_version: Published Version
project:
- _id: 2595697A-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '679239'
  name: Self-Organization of the Bacterial Cell
- _id: 260D98C8-B435-11E9-9278-68D0E5697425
  name: Reconstitution of Bacterial Cell Division Using Purified Components
publication: Nature Communications
publication_identifier:
  issn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  record:
  - id: '8358'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Cooperative ordering of treadmilling filaments in cytoskeletal networks of
  FtsZ and its crosslinker ZapA
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 10
year: '2019'
...
---
_id: '5886'
abstract:
- lang: eng
  text: Problems involving quantum impurities, in which one or a few particles are
    interacting with a macroscopic environment, represent a pervasive paradigm, spanning
    across atomic, molecular, and condensed-matter physics. In this paper we introduce
    new variational approaches to quantum impurities and apply them to the Fröhlich
    polaron–a quasiparticle formed out of an electron (or other point-like impurity)
    in a polar medium, and to the angulon–a quasiparticle formed out of a rotating
    molecule in a bosonic bath. We benchmark these approaches against established
    theories, evaluating their accuracy as a function of the impurity-bath coupling.
article_processing_charge: No
author:
- first_name: Xiang
  full_name: Li, Xiang
  id: 4B7E523C-F248-11E8-B48F-1D18A9856A87
  last_name: Li
- first_name: Giacomo
  full_name: Bighin, Giacomo
  id: 4CA96FD4-F248-11E8-B48F-1D18A9856A87
  last_name: Bighin
  orcid: 0000-0001-8823-9777
- first_name: Enderalp
  full_name: Yakaboylu, Enderalp
  id: 38CB71F6-F248-11E8-B48F-1D18A9856A87
  last_name: Yakaboylu
  orcid: 0000-0001-5973-0874
- first_name: Mikhail
  full_name: Lemeshko, Mikhail
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
citation:
  ama: 'Li X, Bighin G, Yakaboylu E, Lemeshko M. Variational approaches to quantum
    impurities: from the Fröhlich polaron to the angulon. <i>Molecular Physics</i>.
    2019. doi:<a href="https://doi.org/10.1080/00268976.2019.1567852">10.1080/00268976.2019.1567852</a>'
  apa: 'Li, X., Bighin, G., Yakaboylu, E., &#38; Lemeshko, M. (2019). Variational
    approaches to quantum impurities: from the Fröhlich polaron to the angulon. <i>Molecular
    Physics</i>. Taylor and Francis. <a href="https://doi.org/10.1080/00268976.2019.1567852">https://doi.org/10.1080/00268976.2019.1567852</a>'
  chicago: 'Li, Xiang, Giacomo Bighin, Enderalp Yakaboylu, and Mikhail Lemeshko. “Variational
    Approaches to Quantum Impurities: From the Fröhlich Polaron to the Angulon.” <i>Molecular
    Physics</i>. Taylor and Francis, 2019. <a href="https://doi.org/10.1080/00268976.2019.1567852">https://doi.org/10.1080/00268976.2019.1567852</a>.'
  ieee: 'X. Li, G. Bighin, E. Yakaboylu, and M. Lemeshko, “Variational approaches
    to quantum impurities: from the Fröhlich polaron to the angulon,” <i>Molecular
    Physics</i>. Taylor and Francis, 2019.'
  ista: 'Li X, Bighin G, Yakaboylu E, Lemeshko M. 2019. Variational approaches to
    quantum impurities: from the Fröhlich polaron to the angulon. Molecular Physics.'
  mla: 'Li, Xiang, et al. “Variational Approaches to Quantum Impurities: From the
    Fröhlich Polaron to the Angulon.” <i>Molecular Physics</i>, Taylor and Francis,
    2019, doi:<a href="https://doi.org/10.1080/00268976.2019.1567852">10.1080/00268976.2019.1567852</a>.'
  short: X. Li, G. Bighin, E. Yakaboylu, M. Lemeshko, Molecular Physics (2019).
date_created: 2019-01-27T22:59:10Z
date_published: 2019-01-18T00:00:00Z
date_updated: 2026-04-08T07:26:09Z
day: '18'
ddc:
- '530'
department:
- _id: MiLe
doi: 10.1080/00268976.2019.1567852
ec_funded: 1
external_id:
  isi:
  - '000474641400008'
file:
- access_level: open_access
  checksum: 178964744b636a6f036372f4f090a657
  content_type: application/pdf
  creator: dernst
  date_created: 2019-01-29T08:32:57Z
  date_updated: 2020-07-14T12:47:13Z
  file_id: '5896'
  file_name: 2019_MolecularPhysics_Li.pdf
  file_size: 1309966
  relation: main_file
file_date_updated: 2020-07-14T12:47:13Z
has_accepted_license: '1'
isi: 1
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 26031614-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P29902
  name: Quantum rotations in the presence of a many-body environment
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Molecular Physics
publication_identifier:
  issn:
  - 0026-8976
publication_status: published
publisher: Taylor and Francis
quality_controlled: '1'
related_material:
  record:
  - id: '8958'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: 'Variational approaches to quantum impurities: from the Fröhlich polaron to
  the angulon'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2019'
...
---
OA_place: publisher
_id: '6957'
abstract:
- lang: eng
  text: "In many shear flows like pipe flow, plane Couette flow, plane Poiseuille
    flow,  etc. turbulence emerges subcritically. Here, when subjected to strong enough
    perturbations, the flow becomes turbulent in spite of the laminar base flow being
    linearly stable.  The nature of this instability has puzzled the scientific community
    for decades. At onset, turbulence appears in localized patches and flows are spatio-temporally
    intermittent.  In pipe flow the localized turbulent structures are referred to
    as puffs and in planar flows like plane Couette and channel flow, patches arise
    in the form of localized oblique bands. In this thesis, we study the onset of
    turbulence in channel flow in direct numerical simulations from a dynamical system
    theory perspective, as well as by performing experiments in a large aspect ratio
    channel.\r\n\r\nThe aim of the experimental work is to determine the critical
    Reynolds number where turbulence first becomes sustained. Recently, the onset
    of turbulence has been described in analogy to absorbing state phase transition
    (i.e. directed percolation). In particular, it has been shown that the critical
    point can be estimated from the competition between spreading and decay processes.
    Here, by performing experiments, we identify the mechanisms underlying turbulence
    proliferation in channel flow and find the critical Reynolds number, above which
    turbulence becomes sustained. Above the critical point, the continuous growth
    at the tip of the stripes outweighs the stochastic shedding of turbulent patches
    at the tail and the stripes expand. For growing stripes, the probability to decay
    decreases while the probability of stripe splitting increases. Consequently, and
    unlike for the puffs in pipe flow, neither of these two processes is time-independent
    i.e. memoryless. Coupling between stripe expansion and creation of new stripes
    via splitting leads to a significantly lower critical point ($Re_c=670+/-10$)
    than most earlier studies suggest.  \r\n\r\nWhile the above approach sheds light
    on how turbulence first becomes sustained, it provides no insight into the origin
    of the stripes themselves. In the numerical part of the thesis we investigate
    how turbulent stripes form from invariant solutions of the Navier-Stokes equations.
    The origin of these turbulent stripes can be identified by applying concepts from
    the dynamical system theory. In doing so, we identify the exact coherent structures
    underlying stripes and their bifurcations and how they give rise to the turbulent
    attractor in phase space. We first report a family of localized nonlinear traveling
    wave solutions of the Navier-Stokes equations in channel flow. These solutions
    show structural similarities with turbulent stripes in experiments like obliqueness,
    quasi-streamwise streaks and vortices, etc. A parametric study of these traveling
    wave solution is performed, with parameters like Reynolds number, stripe tilt
    angle and domain size, including the stability of the solutions. These solutions
    emerge through saddle-node bifurcations and form a phase space skeleton for the
    turbulent stripes observed in the experiments. The lower branches of these TW
    solutions at different tilt angles undergo Hopf bifurcation and new solutions
    branches of relative periodic orbits emerge. These RPO solutions do not belong
    to the same family and therefore the routes to chaos for different angles are
    different.  \r\n\r\nIn shear flows, turbulence at onset is transient in nature.
    \ Consequently,turbulence can not be tracked to lower Reynolds numbers, where
    the dynamics may simplify. Before this happens, turbulence becomes short-lived
    and laminarizes. In the last part of the thesis, we show that using numerical
    simulations we can continue turbulent stripes in channel flow past the 'relaminarization
    barrier' all the way to their origin. Here, turbulent stripe dynamics simplifies
    and the fluctuations are no longer stochastic and the stripe settles down to a
    relative periodic orbit. This relative periodic orbit originates from the aforementioned
    traveling wave solutions. Starting from the relative periodic orbit, a small increase
    in speed i.e. Reynolds number gives rise to chaos and the attractor dimension
    sharply increases in contrast to the classical transition scenario where the instabilities
    affect the flow globally and give rise to much more gradual route to turbulence."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Chaitanya S
  full_name: Paranjape, Chaitanya S
  id: 3D85B7C4-F248-11E8-B48F-1D18A9856A87
  last_name: Paranjape
citation:
  ama: Paranjape CS. Onset of turbulence in plane Poiseuille flow. 2019. doi:<a href="https://doi.org/10.15479/AT:ISTA:6957">10.15479/AT:ISTA:6957</a>
  apa: Paranjape, C. S. (2019). <i>Onset of turbulence in plane Poiseuille flow</i>.
    Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:6957">https://doi.org/10.15479/AT:ISTA:6957</a>
  chicago: Paranjape, Chaitanya S. “Onset of Turbulence in Plane Poiseuille Flow.”
    Institute of Science and Technology Austria, 2019. <a href="https://doi.org/10.15479/AT:ISTA:6957">https://doi.org/10.15479/AT:ISTA:6957</a>.
  ieee: C. S. Paranjape, “Onset of turbulence in plane Poiseuille flow,” Institute
    of Science and Technology Austria, 2019.
  ista: Paranjape CS. 2019. Onset of turbulence in plane Poiseuille flow. Institute
    of Science and Technology Austria.
  mla: Paranjape, Chaitanya S. <i>Onset of Turbulence in Plane Poiseuille Flow</i>.
    Institute of Science and Technology Austria, 2019, doi:<a href="https://doi.org/10.15479/AT:ISTA:6957">10.15479/AT:ISTA:6957</a>.
  short: C.S. Paranjape, Onset of Turbulence in Plane Poiseuille Flow, Institute of
    Science and Technology Austria, 2019.
corr_author: '1'
date_created: 2019-10-22T12:08:43Z
date_published: 2019-10-24T00:00:00Z
date_updated: 2026-04-08T07:46:58Z
day: '24'
ddc:
- '532'
degree_awarded: PhD
department:
- _id: BjHo
doi: 10.15479/AT:ISTA:6957
file:
- access_level: closed
  checksum: 7ba298ba0ce7e1d11691af6b8eaf0a0a
  content_type: application/zip
  creator: cparanjape
  date_created: 2019-10-23T09:54:43Z
  date_updated: 2020-07-14T12:47:46Z
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  file_size: 45828099
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  content_type: application/pdf
  creator: cparanjape
  date_created: 2019-10-23T10:37:09Z
  date_updated: 2020-07-14T12:47:46Z
  file_id: '6963'
  file_name: Chaitanya_Paranjape_Thesis.pdf
  file_size: 19504197
  relation: main_file
file_date_updated: 2020-07-14T12:47:46Z
has_accepted_license: '1'
keyword:
- Instabilities
- Turbulence
- Nonlinear dynamics
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: '138'
publication_identifier:
  eissn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
status: public
supervisor:
- first_name: Björn
  full_name: Hof, Björn
  id: 3A374330-F248-11E8-B48F-1D18A9856A87
  last_name: Hof
  orcid: 0000-0003-2057-2754
title: Onset of turbulence in plane Poiseuille flow
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2019'
...
---
OA_place: publisher
_id: '7172'
abstract:
- lang: eng
  text: "The development and growth of Arabidopsis thaliana is regulated by a combination
    of genetic programing and also by the environmental influences. An important role
    in these processes play the phytohormones and among them, auxin is crucial as
    it controls many important functions. It is transported through the whole plant
    body by creating local and temporal concentration maxima and minima, which have
    an impact on the cell status, tissue and organ identity. Auxin has the property
    to undergo a directional and finely regulated cell-to-cell transport, which is
    enabled by the transport proteins, localized on the plasma membrane. An important
    role in this process have the PIN auxin efflux proteins, which have an asymmetric/polar
    subcellular localization and determine the directionality of the auxin transport.
    During the last years, there were significant advances in understanding how the
    trafficking molecular machineries function, including studies on molecular interactions,
    function, subcellular localization and intracellular distribution. However, there
    is still a lack of detailed characterization on the steps of endocytosis, exocytosis,
    endocytic recycling and degradation. Due to this fact, I focused on the identification
    of novel trafficking factors and better characterization of the intracellular
    trafficking pathways. My PhD thesis consists of an introductory chapter, three
    experimental chapters, a chapter containing general discussion, conclusions and
    perspectives and also an appendix chapter with published collaborative papers.\r\nThe
    first chapter is separated in two different parts: I start by a general introduction
    to auxin biology and then I introduce the trafficking pathways in the model plant
    Arabidopsis thaliana. Then, I explain also the phosphorylation-signals for polar
    targeting and also the roles of the phytohormone strigolactone.\r\nThe second
    chapter includes the characterization of bar1/sacsin mutant, which was identified
    in a forward genetic screen for novel trafficking components in Arabidopsis thaliana,
    where by the implementation of an EMS-treated pPIN1::PIN1-GFP marker line and
    by using the established inhibitor of ARF-GEFs, Brefeldin A (BFA) as a tool to
    study trafficking processes, we identified a novel factor, which is mediating
    the adaptation of the plant cell to ARF-GEF inhibition. The mutation is in a previously
    uncharacterized gene, encoding a very big protein that we, based on its homologies,
    called SACSIN with domains suggesting roles as a molecular chaperon or as a component
    of the ubiquitin-proteasome system. Our physiology and imaging studies revealed
    that SACSIN is a crucial plant cell component of the adaptation to the ARF-GEF
    inhibition.\r\nThe third chapter includes six subchapters, where I focus on the
    role of the phytohormone strigolactone, which interferes with auxin feedback on
    PIN internalization. Strigolactone moderates the polar auxin transport by increasing
    the internalization of the PIN auxin efflux carriers, which reduces the canalization
    related growth responses. In addition, I also studied the role of phosphorylation
    in the strigolactone regulation of auxin feedback on PIN internalization. In this
    chapter I also present my results on the MAX2-dependence of strigolactone-mediated
    root growth inhibition and I also share my results on the auxin metabolomics profiling
    after application of GR24.\r\nIn the fourth chapter I studied the effect of two
    small molecules ES-9 and ES9-17, which were identified from a collection of small
    molecules with the property to impair the clathrin-mediated endocytosis.\r\nIn
    the fifth chapter, I discuss all my observations and experimental findings and
    suggest alternative hypothesis to interpret my results.\r\nIn the appendix there
    are three collaborative published projects. In the first, I participated in the
    characterization of the role of ES9 as a small molecule, which is inhibitor of
    clathrin- mediated endocytosis in different model organisms. In the second paper,
    I contributed to the characterization of another small molecule ES9-17, which
    is a non-protonophoric analog of ES9 and also impairs the clathrin-mediated endocytosis
    not only in plant cells, but also in mammalian HeLa cells. Last but not least,
    I also attach another paper, where I tried to establish the grafting method as
    a technique in our lab to study canalization related processes."
acknowledged_ssus:
- _id: LifeSc
- _id: Bio
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Mina K
  full_name: Vasileva, Mina K
  id: 3407EB18-F248-11E8-B48F-1D18A9856A87
  last_name: Vasileva
citation:
  ama: Vasileva MK. Molecular mechanisms of endomembrane trafficking in Arabidopsis
    thaliana. 2019. doi:<a href="https://doi.org/10.15479/AT:ISTA:7172">10.15479/AT:ISTA:7172</a>
  apa: Vasileva, M. K. (2019). <i>Molecular mechanisms of endomembrane trafficking
    in Arabidopsis thaliana</i>. Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:7172">https://doi.org/10.15479/AT:ISTA:7172</a>
  chicago: Vasileva, Mina K. “Molecular Mechanisms of Endomembrane Trafficking in
    Arabidopsis Thaliana.” Institute of Science and Technology Austria, 2019. <a href="https://doi.org/10.15479/AT:ISTA:7172">https://doi.org/10.15479/AT:ISTA:7172</a>.
  ieee: M. K. Vasileva, “Molecular mechanisms of endomembrane trafficking in Arabidopsis
    thaliana,” Institute of Science and Technology Austria, 2019.
  ista: Vasileva MK. 2019. Molecular mechanisms of endomembrane trafficking in Arabidopsis
    thaliana. Institute of Science and Technology Austria.
  mla: Vasileva, Mina K. <i>Molecular Mechanisms of Endomembrane Trafficking in Arabidopsis
    Thaliana</i>. Institute of Science and Technology Austria, 2019, doi:<a href="https://doi.org/10.15479/AT:ISTA:7172">10.15479/AT:ISTA:7172</a>.
  short: M.K. Vasileva, Molecular Mechanisms of Endomembrane Trafficking in Arabidopsis
    Thaliana, Institute of Science and Technology Austria, 2019.
corr_author: '1'
date_created: 2019-12-11T21:24:39Z
date_published: 2019-12-12T00:00:00Z
date_updated: 2026-04-08T13:54:45Z
day: '12'
ddc:
- '570'
degree_awarded: PhD
department:
- _id: JiFr
doi: 10.15479/AT:ISTA:7172
file:
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  date_created: 2019-12-12T09:32:36Z
  date_updated: 2020-07-14T12:47:51Z
  file_id: '7175'
  file_name: Thesis_Mina_final_upload_7.docx
  file_size: 20454014
  relation: source_file
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  checksum: 3882c4585e46c9cfb486e4225cad54ab
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  creator: mvasilev
  date_created: 2019-12-12T09:33:10Z
  date_updated: 2020-07-14T12:47:51Z
  file_id: '7176'
  file_name: Thesis_Mina_final_upload_7.pdf
  file_size: 11565025
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file_date_updated: 2020-07-14T12:47:51Z
has_accepted_license: '1'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: '192'
publication_identifier:
  eissn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
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  - id: '449'
    relation: part_of_dissertation
    status: public
  - id: '6377'
    relation: part_of_dissertation
    status: public
  - id: '1346'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
title: Molecular mechanisms of endomembrane trafficking in Arabidopsis thaliana
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2019'
...
---
OA_place: publisher
_id: '6071'
abstract:
- lang: eng
  text: 'Transcription factors, by binding to specific sequences on the DNA, control
    the precise spatio-temporal expression of genes inside a cell. However, this specificity
    is limited, leading to frequent incorrect binding of transcription factors that
    might have deleterious consequences on the cell. By constructing a biophysical
    model of TF-DNA binding in the context of gene regulation, I will first explore
    how regulatory constraints can strongly shape the distribution of a population
    in sequence space. Then, by directly linking this to a picture of multiple types
    of transcription factors performing their functions simultaneously inside the
    cell, I will explore the extent of regulatory crosstalk -- incorrect binding interactions
    between transcription factors and binding sites that lead to erroneous regulatory
    states -- and understand the constraints this places on the design of regulatory
    systems. I will then develop a generic theoretical framework to investigate the
    coevolution of multiple transcription factors and multiple binding sites, in the
    context of a gene regulatory network that performs a certain function. As a particular
    tractable version of this problem, I will consider the evolution of two transcription
    factors when they transmit upstream signals to downstream target genes. Specifically,
    I will describe the evolutionary steady states and the evolutionary pathways involved,
    along with their timescales, of a system that initially undergoes a transcription
    factor duplication event. To connect this important theoretical model to the prominent
    biological event of transcription factor duplication giving rise to paralogous
    families, I will then describe a bioinformatics analysis of C2H2 Zn-finger transcription
    factors, a major family in humans, and focus on the patterns of evolution that
    paralogs have undergone in their various protein domains in the recent past. '
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Roshan
  full_name: Prizak, Roshan
  id: 4456104E-F248-11E8-B48F-1D18A9856A87
  last_name: Prizak
citation:
  ama: Prizak R. Coevolution of transcription factors and their binding sites in sequence
    space. 2019. doi:<a href="https://doi.org/10.15479/at:ista:th6071">10.15479/at:ista:th6071</a>
  apa: Prizak, R. (2019). <i>Coevolution of transcription factors and their binding
    sites in sequence space</i>. Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/at:ista:th6071">https://doi.org/10.15479/at:ista:th6071</a>
  chicago: Prizak, Roshan. “Coevolution of Transcription Factors and Their Binding
    Sites in Sequence Space.” Institute of Science and Technology Austria, 2019. <a
    href="https://doi.org/10.15479/at:ista:th6071">https://doi.org/10.15479/at:ista:th6071</a>.
  ieee: R. Prizak, “Coevolution of transcription factors and their binding sites in
    sequence space,” Institute of Science and Technology Austria, 2019.
  ista: Prizak R. 2019. Coevolution of transcription factors and their binding sites
    in sequence space. Institute of Science and Technology Austria.
  mla: Prizak, Roshan. <i>Coevolution of Transcription Factors and Their Binding Sites
    in Sequence Space</i>. Institute of Science and Technology Austria, 2019, doi:<a
    href="https://doi.org/10.15479/at:ista:th6071">10.15479/at:ista:th6071</a>.
  short: R. Prizak, Coevolution of Transcription Factors and Their Binding Sites in
    Sequence Space, Institute of Science and Technology Austria, 2019.
corr_author: '1'
date_created: 2019-03-06T16:16:10Z
date_published: 2019-03-11T00:00:00Z
date_updated: 2026-04-08T13:54:25Z
day: '11'
ddc:
- '576'
degree_awarded: PhD
department:
- _id: GaTk
- _id: NiBa
doi: 10.15479/at:ista:th6071
file:
- access_level: open_access
  checksum: e60a72de35d270b31f1a23d50f224ec0
  content_type: application/pdf
  creator: rprizak
  date_created: 2019-03-06T16:05:07Z
  date_updated: 2020-07-14T12:47:18Z
  file_id: '6072'
  file_name: Thesis_final_PDFA_RoshanPrizak.pdf
  file_size: 20995465
  relation: main_file
- access_level: closed
  checksum: 67c2630333d05ebafef5f018863a8465
  content_type: application/zip
  creator: rprizak
  date_created: 2019-03-06T16:09:39Z
  date_updated: 2020-07-14T12:47:18Z
  file_id: '6073'
  file_name: thesis_v2_merge.zip
  file_size: 85705272
  relation: source_file
  title: Latex files
file_date_updated: 2020-07-14T12:47:18Z
has_accepted_license: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: '189'
project:
- _id: 254E9036-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P28844-B27
  name: Biophysics of information processing in gene regulation
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '955'
    relation: part_of_dissertation
    status: public
  - id: '1358'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Gašper
  full_name: Tkačik, Gašper
  id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
  last_name: Tkačik
  orcid: 0000-0002-6699-1455
title: Coevolution of transcription factors and their binding sites in sequence space
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2019'
...
---
_id: '6377'
abstract:
- lang: eng
  text: Clathrin-mediated endocytosis (CME) is a highly conserved and essential cellular
    process in eukaryotic cells, but its dynamic and vital nature makes it challenging
    to study using classical genetics tools. In contrast, although small molecules
    can acutely and reversibly perturb CME, the few chemical CME inhibitors that have
    been applied to plants are either ineffective or show undesirable side effects.
    Here, we identify the previously described endosidin9 (ES9) as an inhibitor of
    clathrin heavy chain (CHC) function in both Arabidopsis and human cells through
    affinity-based target isolation, in vitro binding studies and X-ray crystallography.
    Moreover, we present a chemically improved ES9 analog, ES9-17, which lacks the
    undesirable side effects of ES9 while retaining the ability to target CHC. ES9
    and ES9-17 have expanded the chemical toolbox used to probe CHC function, and
    present chemical scaffolds for further design of more specific and potent CHC
    inhibitors across different systems.
article_processing_charge: No
article_type: original
author:
- first_name: Wim
  full_name: Dejonghe, Wim
  last_name: Dejonghe
- first_name: Isha
  full_name: Sharma, Isha
  last_name: Sharma
- first_name: Bram
  full_name: Denoo, Bram
  last_name: Denoo
- first_name: Steven
  full_name: De Munck, Steven
  last_name: De Munck
- first_name: Qing
  full_name: Lu, Qing
  last_name: Lu
- first_name: Kiril
  full_name: Mishev, Kiril
  last_name: Mishev
- first_name: Haydar
  full_name: Bulut, Haydar
  last_name: Bulut
- first_name: Evelien
  full_name: Mylle, Evelien
  last_name: Mylle
- first_name: Riet
  full_name: De Rycke, Riet
  last_name: De Rycke
- first_name: Mina K
  full_name: Vasileva, Mina K
  id: 3407EB18-F248-11E8-B48F-1D18A9856A87
  last_name: Vasileva
- first_name: Daniel V.
  full_name: Savatin, Daniel V.
  last_name: Savatin
- first_name: Wim
  full_name: Nerinckx, Wim
  last_name: Nerinckx
- first_name: An
  full_name: Staes, An
  last_name: Staes
- first_name: Andrzej
  full_name: Drozdzecki, Andrzej
  last_name: Drozdzecki
- first_name: Dominique
  full_name: Audenaert, Dominique
  last_name: Audenaert
- first_name: Klaas
  full_name: Yperman, Klaas
  last_name: Yperman
- first_name: Annemieke
  full_name: Madder, Annemieke
  last_name: Madder
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Daniël
  full_name: Van Damme, Daniël
  last_name: Van Damme
- first_name: Kris
  full_name: Gevaert, Kris
  last_name: Gevaert
- first_name: Volker
  full_name: Haucke, Volker
  last_name: Haucke
- first_name: Savvas N.
  full_name: Savvides, Savvas N.
  last_name: Savvides
- first_name: Johan
  full_name: Winne, Johan
  last_name: Winne
- first_name: Eugenia
  full_name: Russinova, Eugenia
  last_name: Russinova
citation:
  ama: Dejonghe W, Sharma I, Denoo B, et al. Disruption of endocytosis through chemical
    inhibition of clathrin heavy chain function. <i>Nature Chemical Biology</i>. 2019;15(6):641–649.
    doi:<a href="https://doi.org/10.1038/s41589-019-0262-1">10.1038/s41589-019-0262-1</a>
  apa: Dejonghe, W., Sharma, I., Denoo, B., De Munck, S., Lu, Q., Mishev, K., … Russinova,
    E. (2019). Disruption of endocytosis through chemical inhibition of clathrin heavy
    chain function. <i>Nature Chemical Biology</i>. Springer Nature. <a href="https://doi.org/10.1038/s41589-019-0262-1">https://doi.org/10.1038/s41589-019-0262-1</a>
  chicago: Dejonghe, Wim, Isha Sharma, Bram Denoo, Steven De Munck, Qing Lu, Kiril
    Mishev, Haydar Bulut, et al. “Disruption of Endocytosis through Chemical Inhibition
    of Clathrin Heavy Chain Function.” <i>Nature Chemical Biology</i>. Springer Nature,
    2019. <a href="https://doi.org/10.1038/s41589-019-0262-1">https://doi.org/10.1038/s41589-019-0262-1</a>.
  ieee: W. Dejonghe <i>et al.</i>, “Disruption of endocytosis through chemical inhibition
    of clathrin heavy chain function,” <i>Nature Chemical Biology</i>, vol. 15, no.
    6. Springer Nature, pp. 641–649, 2019.
  ista: Dejonghe W, Sharma I, Denoo B, De Munck S, Lu Q, Mishev K, Bulut H, Mylle
    E, De Rycke R, Vasileva MK, Savatin DV, Nerinckx W, Staes A, Drozdzecki A, Audenaert
    D, Yperman K, Madder A, Friml J, Van Damme D, Gevaert K, Haucke V, Savvides SN,
    Winne J, Russinova E. 2019. Disruption of endocytosis through chemical inhibition
    of clathrin heavy chain function. Nature Chemical Biology. 15(6), 641–649.
  mla: Dejonghe, Wim, et al. “Disruption of Endocytosis through Chemical Inhibition
    of Clathrin Heavy Chain Function.” <i>Nature Chemical Biology</i>, vol. 15, no.
    6, Springer Nature, 2019, pp. 641–649, doi:<a href="https://doi.org/10.1038/s41589-019-0262-1">10.1038/s41589-019-0262-1</a>.
  short: W. Dejonghe, I. Sharma, B. Denoo, S. De Munck, Q. Lu, K. Mishev, H. Bulut,
    E. Mylle, R. De Rycke, M.K. Vasileva, D.V. Savatin, W. Nerinckx, A. Staes, A.
    Drozdzecki, D. Audenaert, K. Yperman, A. Madder, J. Friml, D. Van Damme, K. Gevaert,
    V. Haucke, S.N. Savvides, J. Winne, E. Russinova, Nature Chemical Biology 15 (2019)
    641–649.
date_created: 2019-05-05T21:59:11Z
date_published: 2019-06-01T00:00:00Z
date_updated: 2026-04-08T13:54:44Z
day: '01'
department:
- _id: JiFr
doi: 10.1038/s41589-019-0262-1
external_id:
  isi:
  - '000468195600018'
intvolume: '        15'
isi: 1
issue: '6'
language:
- iso: eng
month: '06'
oa_version: None
page: 641–649
publication: Nature Chemical Biology
publication_identifier:
  eissn:
  - 1552-4469
  issn:
  - 1552-4450
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  record:
  - id: '7172'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Disruption of endocytosis through chemical inhibition of clathrin heavy chain
  function
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 15
year: '2019'
...
---
OA_place: publisher
_id: '6179'
abstract:
- lang: eng
  text: "In the first part of this thesis we consider large random matrices with arbitrary
    expectation and a general slowly decaying correlation among its entries. We prove
    universality of the local eigenvalue statistics and optimal local laws for the
    resolvent in the bulk and edge regime. The main novel tool is a systematic diagrammatic
    control of a multivariate cumulant expansion.\r\nIn the second part we consider
    Wigner-type matrices and show that at any cusp singularity of the limiting eigenvalue
    distribution the local eigenvalue statistics are uni- versal and form a Pearcey
    process. Since the density of states typically exhibits only square root or cubic
    root cusp singularities, our work complements previous results on the bulk and
    edge universality and it thus completes the resolution of the Wigner- Dyson-Mehta
    universality conjecture for the last remaining universality type. Our analysis
    holds not only for exact cusps, but approximate cusps as well, where an ex- tended
    Pearcey process emerges. As a main technical ingredient we prove an optimal local
    law at the cusp, and extend the fast relaxation to equilibrium of the Dyson Brow-
    nian motion to the cusp regime.\r\nIn the third and final part we explore the
    entrywise linear statistics of Wigner ma- trices and identify the fluctuations
    for a large class of test functions with little regularity. This enables us to
    study the rectangular Young diagram obtained from the interlacing eigenvalues
    of the random matrix and its minor, and we find that, despite having the same
    limit, the fluctuations differ from those of the algebraic Young tableaux equipped
    with the Plancharel measure."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Dominik J
  full_name: Schröder, Dominik J
  id: 408ED176-F248-11E8-B48F-1D18A9856A87
  last_name: Schröder
  orcid: 0000-0002-2904-1856
citation:
  ama: 'Schröder DJ. From Dyson to Pearcey: Universal statistics in random matrix
    theory. 2019. doi:<a href="https://doi.org/10.15479/AT:ISTA:th6179">10.15479/AT:ISTA:th6179</a>'
  apa: 'Schröder, D. J. (2019). <i>From Dyson to Pearcey: Universal statistics in
    random matrix theory</i>. Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:th6179">https://doi.org/10.15479/AT:ISTA:th6179</a>'
  chicago: 'Schröder, Dominik J. “From Dyson to Pearcey: Universal Statistics in Random
    Matrix Theory.” Institute of Science and Technology Austria, 2019. <a href="https://doi.org/10.15479/AT:ISTA:th6179">https://doi.org/10.15479/AT:ISTA:th6179</a>.'
  ieee: 'D. J. Schröder, “From Dyson to Pearcey: Universal statistics in random matrix
    theory,” Institute of Science and Technology Austria, 2019.'
  ista: 'Schröder DJ. 2019. From Dyson to Pearcey: Universal statistics in random
    matrix theory. Institute of Science and Technology Austria.'
  mla: 'Schröder, Dominik J. <i>From Dyson to Pearcey: Universal Statistics in Random
    Matrix Theory</i>. Institute of Science and Technology Austria, 2019, doi:<a href="https://doi.org/10.15479/AT:ISTA:th6179">10.15479/AT:ISTA:th6179</a>.'
  short: 'D.J. Schröder, From Dyson to Pearcey: Universal Statistics in Random Matrix
    Theory, Institute of Science and Technology Austria, 2019.'
corr_author: '1'
date_created: 2019-03-28T08:58:59Z
date_published: 2019-03-18T00:00:00Z
date_updated: 2026-04-08T13:55:03Z
day: '18'
ddc:
- '515'
- '519'
degree_awarded: PhD
department:
- _id: LaEr
doi: 10.15479/AT:ISTA:th6179
ec_funded: 1
file:
- access_level: closed
  checksum: 6926f66f28079a81c4937e3764be00fc
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  creator: dernst
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  date_updated: 2020-07-14T12:47:21Z
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  file_name: 2019_Schroeder_Thesis.tar.gz
  file_size: 7104482
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  content_type: application/pdf
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  date_created: 2019-03-28T08:53:52Z
  date_updated: 2020-07-14T12:47:21Z
  file_id: '6181'
  file_name: 2019_Schroeder_Thesis.pdf
  file_size: 4228794
  relation: main_file
file_date_updated: 2020-07-14T12:47:21Z
has_accepted_license: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: '375'
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '338804'
  name: Random matrices, universality and disordered quantum systems
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '6184'
    relation: part_of_dissertation
    status: public
  - id: '6186'
    relation: part_of_dissertation
    status: public
  - id: '6185'
    relation: part_of_dissertation
    status: public
  - id: '1012'
    relation: part_of_dissertation
    status: public
  - id: '1144'
    relation: part_of_dissertation
    status: public
  - id: '6182'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
  last_name: Erdös
  orcid: 0000-0001-5366-9603
title: 'From Dyson to Pearcey: Universal statistics in random matrix theory'
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2019'
...
---
_id: '6182'
abstract:
- lang: eng
  text: "We consider large random matrices with a general slowly decaying correlation
    among its entries. We prove universality of the local eigenvalue statistics and
    optimal local laws for the resolvent away from the spectral edges, generalizing
    the recent result of Ajanki et al. [‘Stability of the matrix Dyson equation and
    random matrices with correlations’, Probab. Theory Related Fields 173(1–2) (2019),
    293–373] to allow slow correlation decay and arbitrary expectation. The main novel
    tool is\r\na systematic diagrammatic control of a multivariate cumulant expansion."
article_number: e8
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
  last_name: Erdös
  orcid: 0000-0001-5366-9603
- first_name: Torben H
  full_name: Krüger, Torben H
  id: 3020C786-F248-11E8-B48F-1D18A9856A87
  last_name: Krüger
  orcid: 0000-0002-4821-3297
- first_name: Dominik J
  full_name: Schröder, Dominik J
  id: 408ED176-F248-11E8-B48F-1D18A9856A87
  last_name: Schröder
  orcid: 0000-0002-2904-1856
citation:
  ama: Erdös L, Krüger TH, Schröder DJ. Random matrices with slow correlation decay.
    <i>Forum of Mathematics, Sigma</i>. 2019;7. doi:<a href="https://doi.org/10.1017/fms.2019.2">10.1017/fms.2019.2</a>
  apa: Erdös, L., Krüger, T. H., &#38; Schröder, D. J. (2019). Random matrices with
    slow correlation decay. <i>Forum of Mathematics, Sigma</i>. Cambridge University
    Press. <a href="https://doi.org/10.1017/fms.2019.2">https://doi.org/10.1017/fms.2019.2</a>
  chicago: Erdös, László, Torben H Krüger, and Dominik J Schröder. “Random Matrices
    with Slow Correlation Decay.” <i>Forum of Mathematics, Sigma</i>. Cambridge University
    Press, 2019. <a href="https://doi.org/10.1017/fms.2019.2">https://doi.org/10.1017/fms.2019.2</a>.
  ieee: L. Erdös, T. H. Krüger, and D. J. Schröder, “Random matrices with slow correlation
    decay,” <i>Forum of Mathematics, Sigma</i>, vol. 7. Cambridge University Press,
    2019.
  ista: Erdös L, Krüger TH, Schröder DJ. 2019. Random matrices with slow correlation
    decay. Forum of Mathematics, Sigma. 7, e8.
  mla: Erdös, László, et al. “Random Matrices with Slow Correlation Decay.” <i>Forum
    of Mathematics, Sigma</i>, vol. 7, e8, Cambridge University Press, 2019, doi:<a
    href="https://doi.org/10.1017/fms.2019.2">10.1017/fms.2019.2</a>.
  short: L. Erdös, T.H. Krüger, D.J. Schröder, Forum of Mathematics, Sigma 7 (2019).
corr_author: '1'
date_created: 2019-03-28T09:05:23Z
date_published: 2019-03-26T00:00:00Z
date_updated: 2026-04-08T13:55:03Z
day: '26'
ddc:
- '510'
department:
- _id: LaEr
doi: 10.1017/fms.2019.2
ec_funded: 1
external_id:
  arxiv:
  - '1705.10661'
  isi:
  - '000488847100001'
file:
- access_level: open_access
  checksum: 933a472568221c73b2c3ce8c87bf6d15
  content_type: application/pdf
  creator: dernst
  date_created: 2019-09-17T14:24:13Z
  date_updated: 2020-07-14T12:47:22Z
  file_id: '6883'
  file_name: 2019_Forum_Erdoes.pdf
  file_size: 1520344
  relation: main_file
file_date_updated: 2020-07-14T12:47:22Z
has_accepted_license: '1'
intvolume: '         7'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '338804'
  name: Random matrices, universality and disordered quantum systems
publication: Forum of Mathematics, Sigma
publication_identifier:
  eissn:
  - 2050-5094
publication_status: published
publisher: Cambridge University Press
quality_controlled: '1'
related_material:
  record:
  - id: '6179'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Random matrices with slow correlation decay
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 7
year: '2019'
...
---
_id: '6186'
abstract:
- lang: eng
  text: "We prove that the local eigenvalue statistics of real symmetric Wigner-type\r\nmatrices
    near the cusp points of the eigenvalue density are universal. Together\r\nwith
    the companion paper [arXiv:1809.03971], which proves the same result for\r\nthe
    complex Hermitian symmetry class, this completes the last remaining case of\r\nthe
    Wigner-Dyson-Mehta universality conjecture after bulk and edge\r\nuniversalities
    have been established in the last years. We extend the recent\r\nDyson Brownian
    motion analysis at the edge [arXiv:1712.03881] to the cusp\r\nregime using the
    optimal local law from [arXiv:1809.03971] and the accurate\r\nlocal shape analysis
    of the density from [arXiv:1506.05095, arXiv:1804.07752].\r\nWe also present a
    PDE-based method to improve the estimate on eigenvalue\r\nrigidity via the maximum
    principle of the heat flow related to the Dyson\r\nBrownian motion."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Giorgio
  full_name: Cipolloni, Giorgio
  id: 42198EFA-F248-11E8-B48F-1D18A9856A87
  last_name: Cipolloni
  orcid: 0000-0002-4901-7992
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
  last_name: Erdös
  orcid: 0000-0001-5366-9603
- first_name: Torben H
  full_name: Krüger, Torben H
  id: 3020C786-F248-11E8-B48F-1D18A9856A87
  last_name: Krüger
  orcid: 0000-0002-4821-3297
- first_name: Dominik J
  full_name: Schröder, Dominik J
  id: 408ED176-F248-11E8-B48F-1D18A9856A87
  last_name: Schröder
  orcid: 0000-0002-2904-1856
citation:
  ama: 'Cipolloni G, Erdös L, Krüger TH, Schröder DJ. Cusp universality for random
    matrices, II: The real symmetric case. <i>Pure and Applied Analysis </i>. 2019;1(4):615–707.
    doi:<a href="https://doi.org/10.2140/paa.2019.1.615">10.2140/paa.2019.1.615</a>'
  apa: 'Cipolloni, G., Erdös, L., Krüger, T. H., &#38; Schröder, D. J. (2019). Cusp
    universality for random matrices, II: The real symmetric case. <i>Pure and Applied
    Analysis </i>. MSP. <a href="https://doi.org/10.2140/paa.2019.1.615">https://doi.org/10.2140/paa.2019.1.615</a>'
  chicago: 'Cipolloni, Giorgio, László Erdös, Torben H Krüger, and Dominik J Schröder.
    “Cusp Universality for Random Matrices, II: The Real Symmetric Case.” <i>Pure
    and Applied Analysis </i>. MSP, 2019. <a href="https://doi.org/10.2140/paa.2019.1.615">https://doi.org/10.2140/paa.2019.1.615</a>.'
  ieee: 'G. Cipolloni, L. Erdös, T. H. Krüger, and D. J. Schröder, “Cusp universality
    for random matrices, II: The real symmetric case,” <i>Pure and Applied Analysis
    </i>, vol. 1, no. 4. MSP, pp. 615–707, 2019.'
  ista: 'Cipolloni G, Erdös L, Krüger TH, Schröder DJ. 2019. Cusp universality for
    random matrices, II: The real symmetric case. Pure and Applied Analysis . 1(4),
    615–707.'
  mla: 'Cipolloni, Giorgio, et al. “Cusp Universality for Random Matrices, II: The
    Real Symmetric Case.” <i>Pure and Applied Analysis </i>, vol. 1, no. 4, MSP, 2019,
    pp. 615–707, doi:<a href="https://doi.org/10.2140/paa.2019.1.615">10.2140/paa.2019.1.615</a>.'
  short: G. Cipolloni, L. Erdös, T.H. Krüger, D.J. Schröder, Pure and Applied Analysis  1
    (2019) 615–707.
date_created: 2019-03-28T10:21:17Z
date_published: 2019-10-12T00:00:00Z
date_updated: 2026-04-08T13:55:02Z
day: '12'
department:
- _id: LaEr
doi: 10.2140/paa.2019.1.615
ec_funded: 1
external_id:
  arxiv:
  - '1811.04055'
intvolume: '         1'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1811.04055
month: '10'
oa: 1
oa_version: Preprint
page: 615–707
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '338804'
  name: Random matrices, universality and disordered quantum systems
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
publication: 'Pure and Applied Analysis '
publication_identifier:
  eissn:
  - 2578-5885
  issn:
  - 2578-5893
publication_status: published
publisher: MSP
quality_controlled: '1'
related_material:
  record:
  - id: '6179'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: 'Cusp universality for random matrices, II: The real symmetric case'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1
year: '2019'
...
---
OA_place: publisher
_id: '7186'
abstract:
- lang: eng
  text: "Tissue morphogenesis in developmental or physiological processes is regulated
    by molecular\r\nand mechanical signals. While the molecular signaling cascades
    are increasingly well\r\ndescribed, the mechanical signals affecting tissue shape
    changes have only recently been\r\nstudied in greater detail. To gain more insight
    into the mechanochemical and biophysical\r\nbasis of an epithelial spreading process
    (epiboly) in early zebrafish development, we studied\r\ncell-cell junction formation
    and actomyosin network dynamics at the boundary between\r\nsurface layer epithelial
    cells (EVL) and the yolk syncytial layer (YSL). During zebrafish epiboly,\r\nthe
    cell mass sitting on top of the yolk cell spreads to engulf the yolk cell by the
    end of\r\ngastrulation. It has been previously shown that an actomyosin ring residing
    within the YSL\r\npulls on the EVL tissue through a cable-constriction and a flow-friction
    motor, thereby\r\ndragging the tissue vegetal wards. Pulling forces are likely
    transmitted from the YSL\r\nactomyosin ring to EVL cells; however, the nature
    and formation of the junctional structure\r\nmediating this process has not been
    well described so far. Therefore, our main aim was to\r\ndetermine the nature,
    dynamics and potential function of the EVL-YSL junction during this\r\nepithelial
    tissue spreading. Specifically, we show that the EVL-YSL junction is a\r\nmechanosensitive
    structure, predominantly made of tight junction (TJ) proteins. The process\r\nof
    TJ mechanosensation depends on the retrograde flow of non-junctional, phase-separated\r\nZonula
    Occludens-1 (ZO-1) protein clusters towards the EVL-YSL boundary. Interestingly,
    we\r\ncould demonstrate that ZO-1 is present in a non-junctional pool on the surface
    of the yolk\r\ncell, and ZO-1 undergoes a phase separation process that likely
    renders the protein\r\nresponsive to flows. These flows are directed towards the
    junction and mediate proper\r\ntension-dependent recruitment of ZO-1. Upon reaching
    the EVL-YSL junction ZO-1 gets\r\nincorporated into the junctional pool mediated
    through its direct actin-binding domain.\r\nWhen the non-junctional pool and/or
    ZO-1 direct actin binding is absent, TJs fail in their\r\nproper mechanosensitive
    responses resulting in slower tissue spreading. We could further\r\ndemonstrate
    that depletion of ZO proteins within the YSL results in diminished actomyosin\r\nring
    formation. This suggests that a mechanochemical feedback loop is at work during\r\nzebrafish
    epiboly: ZO proteins help in proper actomyosin ring formation and actomyosin\r\ncontractility
    and flows positively influence ZO-1 junctional recruitment. Finally, such a\r\nmesoscale
    polarization process mediated through the flow of phase-separated protein\r\nclusters
    might have implications for other processes such as immunological synapse\r\nformation,
    C. elegans zygote polarization and wound healing."
acknowledged_ssus:
- _id: Bio
- _id: LifeSc
- _id: EM-Fac
- _id: SSU
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Cornelia
  full_name: Schwayer, Cornelia
  id: 3436488C-F248-11E8-B48F-1D18A9856A87
  last_name: Schwayer
  orcid: 0000-0001-5130-2226
citation:
  ama: Schwayer C. Mechanosensation of tight junctions depends on ZO-1 phase separation
    and flow. 2019. doi:<a href="https://doi.org/10.15479/AT:ISTA:7186">10.15479/AT:ISTA:7186</a>
  apa: Schwayer, C. (2019). <i>Mechanosensation of tight junctions depends on ZO-1
    phase separation and flow</i>. Institute of Science and Technology Austria. <a
    href="https://doi.org/10.15479/AT:ISTA:7186">https://doi.org/10.15479/AT:ISTA:7186</a>
  chicago: Schwayer, Cornelia. “Mechanosensation of Tight Junctions Depends on ZO-1
    Phase Separation and Flow.” Institute of Science and Technology Austria, 2019.
    <a href="https://doi.org/10.15479/AT:ISTA:7186">https://doi.org/10.15479/AT:ISTA:7186</a>.
  ieee: C. Schwayer, “Mechanosensation of tight junctions depends on ZO-1 phase separation
    and flow,” Institute of Science and Technology Austria, 2019.
  ista: Schwayer C. 2019. Mechanosensation of tight junctions depends on ZO-1 phase
    separation and flow. Institute of Science and Technology Austria.
  mla: Schwayer, Cornelia. <i>Mechanosensation of Tight Junctions Depends on ZO-1
    Phase Separation and Flow</i>. Institute of Science and Technology Austria, 2019,
    doi:<a href="https://doi.org/10.15479/AT:ISTA:7186">10.15479/AT:ISTA:7186</a>.
  short: C. Schwayer, Mechanosensation of Tight Junctions Depends on ZO-1 Phase Separation
    and Flow, Institute of Science and Technology Austria, 2019.
corr_author: '1'
date_created: 2019-12-16T14:26:14Z
date_published: 2019-12-16T00:00:00Z
date_updated: 2026-04-08T13:55:29Z
day: '16'
ddc:
- '570'
degree_awarded: PhD
department:
- _id: CaHe
doi: 10.15479/AT:ISTA:7186
file:
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  checksum: 585583c1c875c5d9525703a539668a7c
  content_type: application/zip
  creator: cschwayer
  date_created: 2019-12-19T15:18:11Z
  date_updated: 2020-07-14T12:47:52Z
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  file_name: DocumentSourceFiles.zip
  file_size: 19431292
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  creator: cschwayer
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  file_name: Thesis_CS_final.pdf
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file_date_updated: 2020-07-14T12:47:52Z
has_accepted_license: '1'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: '107'
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '7001'
    relation: part_of_dissertation
    status: public
  - id: '1096'
    relation: dissertation_contains
    status: public
status: public
supervisor:
- first_name: Carl-Philipp J
  full_name: Heisenberg, Carl-Philipp J
  id: 39427864-F248-11E8-B48F-1D18A9856A87
  last_name: Heisenberg
  orcid: 0000-0002-0912-4566
title: Mechanosensation of tight junctions depends on ZO-1 phase separation and flow
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2019'
...
---
_id: '6240'
abstract:
- lang: eng
  text: For a general class of large non-Hermitian random block matrices X we prove
    that there are no eigenvalues away from a deterministic set with very high probability.
    This set is obtained from the Dyson equation of the Hermitization of X as the
    self-consistent approximation of the pseudospectrum. We demonstrate that the analysis
    of the matrix Dyson equation from (Probab. Theory Related Fields (2018)) offers
    a unified treatment of many structured matrix ensembles.
article_processing_charge: No
arxiv: 1
author:
- first_name: Johannes
  full_name: Alt, Johannes
  id: 36D3D8B6-F248-11E8-B48F-1D18A9856A87
  last_name: Alt
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
  last_name: Erdös
  orcid: 0000-0001-5366-9603
- first_name: Torben H
  full_name: Krüger, Torben H
  id: 3020C786-F248-11E8-B48F-1D18A9856A87
  last_name: Krüger
  orcid: 0000-0002-4821-3297
- first_name: Yuriy
  full_name: Nemish, Yuriy
  id: 4D902E6A-F248-11E8-B48F-1D18A9856A87
  last_name: Nemish
  orcid: 0000-0002-7327-856X
citation:
  ama: Alt J, Erdös L, Krüger TH, Nemish Y. Location of the spectrum of Kronecker
    random matrices. <i>Annales de l’institut Henri Poincare</i>. 2019;55(2):661-696.
    doi:<a href="https://doi.org/10.1214/18-AIHP894">10.1214/18-AIHP894</a>
  apa: Alt, J., Erdös, L., Krüger, T. H., &#38; Nemish, Y. (2019). Location of the
    spectrum of Kronecker random matrices. <i>Annales de l’institut Henri Poincare</i>.
    Institut Henri Poincaré. <a href="https://doi.org/10.1214/18-AIHP894">https://doi.org/10.1214/18-AIHP894</a>
  chicago: Alt, Johannes, László Erdös, Torben H Krüger, and Yuriy Nemish. “Location
    of the Spectrum of Kronecker Random Matrices.” <i>Annales de l’institut Henri
    Poincare</i>. Institut Henri Poincaré, 2019. <a href="https://doi.org/10.1214/18-AIHP894">https://doi.org/10.1214/18-AIHP894</a>.
  ieee: J. Alt, L. Erdös, T. H. Krüger, and Y. Nemish, “Location of the spectrum of
    Kronecker random matrices,” <i>Annales de l’institut Henri Poincare</i>, vol.
    55, no. 2. Institut Henri Poincaré, pp. 661–696, 2019.
  ista: Alt J, Erdös L, Krüger TH, Nemish Y. 2019. Location of the spectrum of Kronecker
    random matrices. Annales de l’institut Henri Poincare. 55(2), 661–696.
  mla: Alt, Johannes, et al. “Location of the Spectrum of Kronecker Random Matrices.”
    <i>Annales de l’institut Henri Poincare</i>, vol. 55, no. 2, Institut Henri Poincaré,
    2019, pp. 661–96, doi:<a href="https://doi.org/10.1214/18-AIHP894">10.1214/18-AIHP894</a>.
  short: J. Alt, L. Erdös, T.H. Krüger, Y. Nemish, Annales de l’institut Henri Poincare
    55 (2019) 661–696.
date_created: 2019-04-08T14:05:04Z
date_published: 2019-05-01T00:00:00Z
date_updated: 2026-04-08T14:11:36Z
day: '01'
department:
- _id: LaEr
doi: 10.1214/18-AIHP894
ec_funded: 1
external_id:
  arxiv:
  - '1706.08343'
  isi:
  - '000467793600003'
intvolume: '        55'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1706.08343
month: '05'
oa: 1
oa_version: Preprint
page: 661-696
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '338804'
  name: Random matrices, universality and disordered quantum systems
publication: Annales de l'institut Henri Poincare
publication_identifier:
  issn:
  - 0246-0203
publication_status: published
publisher: Institut Henri Poincaré
quality_controlled: '1'
related_material:
  record:
  - id: '149'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Location of the spectrum of Kronecker random matrices
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 55
year: '2019'
...
---
_id: '5856'
abstract:
- lang: eng
  text: We give a bound on the ground-state energy of a system of N non-interacting
    fermions in a three-dimensional cubic box interacting with an impurity particle
    via point interactions. We show that the change in energy compared to the system
    in the absence of the impurity is bounded in terms of the gas density and the
    scattering length of the interaction, independently of N. Our bound holds as long
    as the ratio of the mass of the impurity to the one of the gas particles is larger
    than a critical value m∗ ∗≈ 0.36 , which is the same regime for which we recently
    showed stability of the system.
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Thomas
  full_name: Moser, Thomas
  id: 2B5FC9A4-F248-11E8-B48F-1D18A9856A87
  last_name: Moser
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
citation:
  ama: Moser T, Seiringer R. Energy contribution of a point-interacting impurity in
    a Fermi gas. <i>Annales Henri Poincare</i>. 2019;20(4):1325–1365. doi:<a href="https://doi.org/10.1007/s00023-018-00757-0">10.1007/s00023-018-00757-0</a>
  apa: Moser, T., &#38; Seiringer, R. (2019). Energy contribution of a point-interacting
    impurity in a Fermi gas. <i>Annales Henri Poincare</i>. Springer. <a href="https://doi.org/10.1007/s00023-018-00757-0">https://doi.org/10.1007/s00023-018-00757-0</a>
  chicago: Moser, Thomas, and Robert Seiringer. “Energy Contribution of a Point-Interacting
    Impurity in a Fermi Gas.” <i>Annales Henri Poincare</i>. Springer, 2019. <a href="https://doi.org/10.1007/s00023-018-00757-0">https://doi.org/10.1007/s00023-018-00757-0</a>.
  ieee: T. Moser and R. Seiringer, “Energy contribution of a point-interacting impurity
    in a Fermi gas,” <i>Annales Henri Poincare</i>, vol. 20, no. 4. Springer, pp.
    1325–1365, 2019.
  ista: Moser T, Seiringer R. 2019. Energy contribution of a point-interacting impurity
    in a Fermi gas. Annales Henri Poincare. 20(4), 1325–1365.
  mla: Moser, Thomas, and Robert Seiringer. “Energy Contribution of a Point-Interacting
    Impurity in a Fermi Gas.” <i>Annales Henri Poincare</i>, vol. 20, no. 4, Springer,
    2019, pp. 1325–1365, doi:<a href="https://doi.org/10.1007/s00023-018-00757-0">10.1007/s00023-018-00757-0</a>.
  short: T. Moser, R. Seiringer, Annales Henri Poincare 20 (2019) 1325–1365.
date_created: 2019-01-20T22:59:17Z
date_published: 2019-04-01T00:00:00Z
date_updated: 2026-04-08T14:12:30Z
day: '01'
ddc:
- '530'
department:
- _id: RoSe
doi: 10.1007/s00023-018-00757-0
ec_funded: 1
external_id:
  arxiv:
  - '1807.00739'
  isi:
  - '000462444300008'
file:
- access_level: open_access
  checksum: 255e42f957a8e2b10aad2499c750a8d6
  content_type: application/pdf
  creator: dernst
  date_created: 2019-01-28T15:27:17Z
  date_updated: 2020-07-14T12:47:12Z
  file_id: '5894'
  file_name: 2019_Annales_Moser.pdf
  file_size: 859846
  relation: main_file
file_date_updated: 2020-07-14T12:47:12Z
has_accepted_license: '1'
intvolume: '        20'
isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 1325–1365
project:
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694227'
  name: Analysis of quantum many-body systems
- _id: 25C878CE-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P27533_N27
  name: Structure of the Excitation Spectrum for Many-Body Quantum Systems
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: Annales Henri Poincare
publication_identifier:
  issn:
  - 1424-0637
publication_status: published
publisher: Springer
quality_controlled: '1'
related_material:
  record:
  - id: '52'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Energy contribution of a point-interacting impurity in a Fermi gas
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 20
year: '2019'
...
---
_id: '5828'
abstract:
- lang: eng
  text: Hippocampus is needed for both spatial working and reference memories. Here,
    using a radial eight-arm maze, we examined how the combined demand on these memories
    influenced CA1 place cell assemblies while reference memories were partially updated.
    This was contrasted with control tasks requiring only working memory or the update
    of reference memory. Reference memory update led to the reward-directed place
    field shifts at newly rewarded arms and to the gradual strengthening of firing
    in passes between newly rewarded arms but not between those passes that included
    a familiar-rewarded arm. At the maze center, transient network synchronization
    periods preferentially replayed trajectories of the next chosen arm in reference
    memory tasks but the previously visited arm in the working memory task. Hence,
    reference memory demand was uniquely associated with a gradual, goal novelty-related
    reorganization of place cell assemblies and with trajectory replay that reflected
    the animal's decision of which arm to visit next.
article_processing_charge: No
article_type: original
author:
- first_name: Haibing
  full_name: Xu, Haibing
  id: 310349D0-F248-11E8-B48F-1D18A9856A87
  last_name: Xu
- first_name: Peter
  full_name: Baracskay, Peter
  id: 361CC00E-F248-11E8-B48F-1D18A9856A87
  last_name: Baracskay
- first_name: Joseph
  full_name: O'Neill, Joseph
  id: 426376DC-F248-11E8-B48F-1D18A9856A87
  last_name: O'Neill
- first_name: Jozsef L
  full_name: Csicsvari, Jozsef L
  id: 3FA14672-F248-11E8-B48F-1D18A9856A87
  last_name: Csicsvari
  orcid: 0000-0002-5193-4036
citation:
  ama: Xu H, Baracskay P, O’Neill J, Csicsvari JL. Assembly responses of hippocampal
    CA1 place cells predict learned behavior in goal-directed spatial tasks on the
    radial eight-arm maze. <i>Neuron</i>. 2019;101(1):119-132.e4. doi:<a href="https://doi.org/10.1016/j.neuron.2018.11.015">10.1016/j.neuron.2018.11.015</a>
  apa: Xu, H., Baracskay, P., O’Neill, J., &#38; Csicsvari, J. L. (2019). Assembly
    responses of hippocampal CA1 place cells predict learned behavior in goal-directed
    spatial tasks on the radial eight-arm maze. <i>Neuron</i>. Elsevier. <a href="https://doi.org/10.1016/j.neuron.2018.11.015">https://doi.org/10.1016/j.neuron.2018.11.015</a>
  chicago: Xu, Haibing, Peter Baracskay, Joseph O’Neill, and Jozsef L Csicsvari. “Assembly
    Responses of Hippocampal CA1 Place Cells Predict Learned Behavior in Goal-Directed
    Spatial Tasks on the Radial Eight-Arm Maze.” <i>Neuron</i>. Elsevier, 2019. <a
    href="https://doi.org/10.1016/j.neuron.2018.11.015">https://doi.org/10.1016/j.neuron.2018.11.015</a>.
  ieee: H. Xu, P. Baracskay, J. O’Neill, and J. L. Csicsvari, “Assembly responses
    of hippocampal CA1 place cells predict learned behavior in goal-directed spatial
    tasks on the radial eight-arm maze,” <i>Neuron</i>, vol. 101, no. 1. Elsevier,
    p. 119–132.e4, 2019.
  ista: Xu H, Baracskay P, O’Neill J, Csicsvari JL. 2019. Assembly responses of hippocampal
    CA1 place cells predict learned behavior in goal-directed spatial tasks on the
    radial eight-arm maze. Neuron. 101(1), 119–132.e4.
  mla: Xu, Haibing, et al. “Assembly Responses of Hippocampal CA1 Place Cells Predict
    Learned Behavior in Goal-Directed Spatial Tasks on the Radial Eight-Arm Maze.”
    <i>Neuron</i>, vol. 101, no. 1, Elsevier, 2019, p. 119–132.e4, doi:<a href="https://doi.org/10.1016/j.neuron.2018.11.015">10.1016/j.neuron.2018.11.015</a>.
  short: H. Xu, P. Baracskay, J. O’Neill, J.L. Csicsvari, Neuron 101 (2019) 119–132.e4.
date_created: 2019-01-13T22:59:10Z
date_published: 2019-01-02T00:00:00Z
date_updated: 2026-04-08T14:18:54Z
day: '02'
department:
- _id: JoCs
doi: 10.1016/j.neuron.2018.11.015
ec_funded: 1
external_id:
  isi:
  - '000454791500014'
intvolume: '       101'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.doi.org/10.1016/j.neuron.2018.11.015
month: '01'
oa: 1
oa_version: Published Version
page: 119-132.e4
project:
- _id: 257A4776-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '281511'
  name: Memory-related information processing in neuronal circuits of the hippocampus
    and entorhinal cortex
publication: Neuron
publication_identifier:
  issn:
  - 1097-4199
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/reading-rats-minds/
  record:
  - id: '837'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Assembly responses of hippocampal CA1 place cells predict learned behavior
  in goal-directed spatial tasks on the radial eight-arm maze
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 101
year: '2019'
...
---
_id: '5678'
abstract:
- lang: eng
  text: "The order-k Voronoi tessellation of a locally finite set \U0001D44B⊆ℝ\U0001D45B
    decomposes ℝ\U0001D45B into convex domains whose points have the same k nearest
    neighbors in X. Assuming X is a stationary Poisson point process, we give explicit
    formulas for the expected number and total area of faces of a given dimension
    per unit volume of space. We also develop a relaxed version of discrete Morse
    theory and generalize by counting only faces, for which the k nearest points in
    X are within a given distance threshold."
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Anton
  full_name: Nikitenko, Anton
  id: 3E4FF1BA-F248-11E8-B48F-1D18A9856A87
  last_name: Nikitenko
  orcid: 0000-0002-0659-3201
citation:
  ama: Edelsbrunner H, Nikitenko A. Poisson–Delaunay Mosaics of Order k. <i>Discrete
    and Computational Geometry</i>. 2019;62(4):865–878. doi:<a href="https://doi.org/10.1007/s00454-018-0049-2">10.1007/s00454-018-0049-2</a>
  apa: Edelsbrunner, H., &#38; Nikitenko, A. (2019). Poisson–Delaunay Mosaics of Order
    k. <i>Discrete and Computational Geometry</i>. Springer. <a href="https://doi.org/10.1007/s00454-018-0049-2">https://doi.org/10.1007/s00454-018-0049-2</a>
  chicago: Edelsbrunner, Herbert, and Anton Nikitenko. “Poisson–Delaunay Mosaics of
    Order K.” <i>Discrete and Computational Geometry</i>. Springer, 2019. <a href="https://doi.org/10.1007/s00454-018-0049-2">https://doi.org/10.1007/s00454-018-0049-2</a>.
  ieee: H. Edelsbrunner and A. Nikitenko, “Poisson–Delaunay Mosaics of Order k,” <i>Discrete
    and Computational Geometry</i>, vol. 62, no. 4. Springer, pp. 865–878, 2019.
  ista: Edelsbrunner H, Nikitenko A. 2019. Poisson–Delaunay Mosaics of Order k. Discrete
    and Computational Geometry. 62(4), 865–878.
  mla: Edelsbrunner, Herbert, and Anton Nikitenko. “Poisson–Delaunay Mosaics of Order
    K.” <i>Discrete and Computational Geometry</i>, vol. 62, no. 4, Springer, 2019,
    pp. 865–878, doi:<a href="https://doi.org/10.1007/s00454-018-0049-2">10.1007/s00454-018-0049-2</a>.
  short: H. Edelsbrunner, A. Nikitenko, Discrete and Computational Geometry 62 (2019)
    865–878.
corr_author: '1'
date_created: 2018-12-16T22:59:20Z
date_published: 2019-12-01T00:00:00Z
date_updated: 2026-04-08T14:19:30Z
day: '01'
ddc:
- '516'
department:
- _id: HeEd
doi: 10.1007/s00454-018-0049-2
ec_funded: 1
external_id:
  arxiv:
  - '1709.09380'
  isi:
  - '000494042900008'
file:
- access_level: open_access
  checksum: f9d00e166efaccb5a76bbcbb4dcea3b4
  content_type: application/pdf
  creator: dernst
  date_created: 2019-02-06T10:10:46Z
  date_updated: 2020-07-14T12:47:10Z
  file_id: '5932'
  file_name: 2018_DiscreteCompGeometry_Edelsbrunner.pdf
  file_size: 599339
  relation: main_file
file_date_updated: 2020-07-14T12:47:10Z
has_accepted_license: '1'
intvolume: '        62'
isi: 1
issue: '4'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: 865–878
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: Discrete and Computational Geometry
publication_identifier:
  eissn:
  - '14320444'
  issn:
  - '01795376'
publication_status: published
publisher: Springer
quality_controlled: '1'
related_material:
  record:
  - id: '6287'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Poisson–Delaunay Mosaics of Order k
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 62
year: '2019'
...
---
_id: '7406'
abstract:
- lang: eng
  text: "Background\r\nSynaptic vesicles (SVs) are an integral part of the neurotransmission
    machinery, and isolation of SVs from their host neuron is necessary to reveal
    their most fundamental biochemical and functional properties in in vitro assays.
    Isolated SVs from neurons that have been genetically engineered, e.g. to introduce
    genetically encoded indicators, are not readily available but would permit new
    insights into SV structure and function. Furthermore, it is unclear if cultured
    neurons can provide sufficient starting material for SV isolation procedures.\r\n\r\nNew
    method\r\nHere, we demonstrate an efficient ex vivo procedure to obtain functional
    SVs from cultured rat cortical neurons after genetic engineering with a lentivirus.\r\n\r\nResults\r\nWe
    show that ∼108 plated cortical neurons allow isolation of suitable SV amounts
    for functional analysis and imaging. We found that SVs isolated from cultured
    neurons have neurotransmitter uptake comparable to that of SVs isolated from intact
    cortex. Using total internal reflection fluorescence (TIRF) microscopy, we visualized
    an exogenous SV-targeted marker protein and demonstrated the high efficiency of
    SV modification.\r\n\r\nComparison with existing methods\r\nObtaining SVs from
    genetically engineered neurons currently generally requires the availability of
    transgenic animals, which is constrained by technical (e.g. cost and time) and
    biological (e.g. developmental defects and lethality) limitations.\r\n\r\nConclusions\r\nThese
    results demonstrate the modification and isolation of functional SVs using cultured
    neurons and viral transduction. The ability to readily obtain SVs from genetically
    engineered neurons will permit linking in situ studies to in vitro experiments
    in a variety of genetic contexts."
acknowledged_ssus:
- _id: Bio
- _id: EM-Fac
article_processing_charge: No
article_type: original
author:
- first_name: Catherine
  full_name: Mckenzie, Catherine
  id: 3EEDE19A-F248-11E8-B48F-1D18A9856A87
  last_name: Mckenzie
- first_name: Miroslava
  full_name: Spanova, Miroslava
  id: 44A924DC-F248-11E8-B48F-1D18A9856A87
  last_name: Spanova
- first_name: Alexander J
  full_name: Johnson, Alexander J
  id: 46A62C3A-F248-11E8-B48F-1D18A9856A87
  last_name: Johnson
  orcid: 0000-0002-2739-8843
- first_name: Stephanie
  full_name: Kainrath, Stephanie
  id: 32CFBA64-F248-11E8-B48F-1D18A9856A87
  last_name: Kainrath
  orcid: 0000-0002-6709-2195
- first_name: Vanessa
  full_name: Zheden, Vanessa
  id: 39C5A68A-F248-11E8-B48F-1D18A9856A87
  last_name: Zheden
  orcid: 0000-0002-9438-4783
- first_name: Harald H.
  full_name: Sitte, Harald H.
  last_name: Sitte
- first_name: Harald L
  full_name: Janovjak, Harald L
  id: 33BA6C30-F248-11E8-B48F-1D18A9856A87
  last_name: Janovjak
  orcid: 0000-0002-8023-9315
citation:
  ama: Mckenzie C, Spanova M, Johnson AJ, et al. Isolation of synaptic vesicles from
    genetically engineered cultured neurons. <i>Journal of Neuroscience Methods</i>.
    2019;312:114-121. doi:<a href="https://doi.org/10.1016/j.jneumeth.2018.11.018">10.1016/j.jneumeth.2018.11.018</a>
  apa: Mckenzie, C., Spanova, M., Johnson, A. J., Kainrath, S., Zheden, V., Sitte,
    H. H., &#38; Janovjak, H. L. (2019). Isolation of synaptic vesicles from genetically
    engineered cultured neurons. <i>Journal of Neuroscience Methods</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.jneumeth.2018.11.018">https://doi.org/10.1016/j.jneumeth.2018.11.018</a>
  chicago: Mckenzie, Catherine, Miroslava Spanova, Alexander J Johnson, Stephanie
    Kainrath, Vanessa Zheden, Harald H. Sitte, and Harald L Janovjak. “Isolation of
    Synaptic Vesicles from Genetically Engineered Cultured Neurons.” <i>Journal of
    Neuroscience Methods</i>. Elsevier, 2019. <a href="https://doi.org/10.1016/j.jneumeth.2018.11.018">https://doi.org/10.1016/j.jneumeth.2018.11.018</a>.
  ieee: C. Mckenzie <i>et al.</i>, “Isolation of synaptic vesicles from genetically
    engineered cultured neurons,” <i>Journal of Neuroscience Methods</i>, vol. 312.
    Elsevier, pp. 114–121, 2019.
  ista: Mckenzie C, Spanova M, Johnson AJ, Kainrath S, Zheden V, Sitte HH, Janovjak
    HL. 2019. Isolation of synaptic vesicles from genetically engineered cultured
    neurons. Journal of Neuroscience Methods. 312, 114–121.
  mla: Mckenzie, Catherine, et al. “Isolation of Synaptic Vesicles from Genetically
    Engineered Cultured Neurons.” <i>Journal of Neuroscience Methods</i>, vol. 312,
    Elsevier, 2019, pp. 114–21, doi:<a href="https://doi.org/10.1016/j.jneumeth.2018.11.018">10.1016/j.jneumeth.2018.11.018</a>.
  short: C. Mckenzie, M. Spanova, A.J. Johnson, S. Kainrath, V. Zheden, H.H. Sitte,
    H.L. Janovjak, Journal of Neuroscience Methods 312 (2019) 114–121.
date_created: 2020-01-30T09:12:19Z
date_published: 2019-01-15T00:00:00Z
date_updated: 2026-04-14T08:34:33Z
day: '15'
department:
- _id: HaJa
- _id: Bio
doi: 10.1016/j.jneumeth.2018.11.018
ec_funded: 1
external_id:
  isi:
  - '000456220900013'
  pmid:
  - '30496761'
intvolume: '       312'
isi: 1
language:
- iso: eng
month: '01'
oa_version: None
page: 114-121
pmid: 1
project:
- _id: 25548C20-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '303564'
  name: Microbial Ion Channels for Synthetic Neurobiology
- _id: 26538374-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03630
  name: Molecular mechanisms of endocytic cargo recognition in plants
- _id: 2548AE96-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: W1232
  name: Molecular Drug Targets
publication: Journal of Neuroscience Methods
publication_identifier:
  issn:
  - 0165-0270
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Isolation of synaptic vesicles from genetically engineered cultured neurons
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 312
year: '2019'
...
---
_id: '7156'
abstract:
- lang: eng
  text: We propose an efficient microwave-photonic modulator as a resource for stationary
    entangled microwave-optical fields and develop the theory for deterministic entanglement
    generation and quantum state transfer in multi-resonant electro-optic systems.
    The device is based on a single crystal whispering gallery mode resonator integrated
    into a 3D-microwave cavity. The specific design relies on a new combination of
    thin-film technology and conventional machining that is optimized for the lowest
    dissipation rates in the microwave, optical, and mechanical domains. We extract
    important device properties from finite-element simulations and predict continuous
    variable entanglement generation rates on the order of a Mebit/s for optical pump
    powers of only a few tens of microwatts. We compare the quantum state transfer
    fidelities of coherent, squeezed, and non-Gaussian cat states for both teleportation
    and direct conversion protocols under realistic conditions. Combining the unique
    capabilities of circuit quantum electrodynamics with the resilience of fiber optic
    communication could facilitate long-distance solid-state qubit networks, new methods
    for quantum signal synthesis, quantum key distribution, and quantum enhanced detection,
    as well as more power-efficient classical sensing and modulation.
article_number: '108'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Alfredo R
  full_name: Rueda Sanchez, Alfredo R
  id: 3B82B0F8-F248-11E8-B48F-1D18A9856A87
  last_name: Rueda Sanchez
  orcid: 0000-0001-6249-5860
- first_name: William J
  full_name: Hease, William J
  id: 29705398-F248-11E8-B48F-1D18A9856A87
  last_name: Hease
  orcid: 0000-0001-9868-2166
- first_name: Shabir
  full_name: Barzanjeh, Shabir
  id: 2D25E1F6-F248-11E8-B48F-1D18A9856A87
  last_name: Barzanjeh
  orcid: 0000-0003-0415-1423
- first_name: Johannes M
  full_name: Fink, Johannes M
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
citation:
  ama: Rueda Sanchez AR, Hease WJ, Barzanjeh S, Fink JM. Electro-optic entanglement
    source for microwave to telecom quantum state transfer. <i>npj Quantum Information</i>.
    2019;5. doi:<a href="https://doi.org/10.1038/s41534-019-0220-5">10.1038/s41534-019-0220-5</a>
  apa: Rueda Sanchez, A. R., Hease, W. J., Barzanjeh, S., &#38; Fink, J. M. (2019).
    Electro-optic entanglement source for microwave to telecom quantum state transfer.
    <i>Npj Quantum Information</i>. Springer Nature. <a href="https://doi.org/10.1038/s41534-019-0220-5">https://doi.org/10.1038/s41534-019-0220-5</a>
  chicago: Rueda Sanchez, Alfredo R, William J Hease, Shabir Barzanjeh, and Johannes
    M Fink. “Electro-Optic Entanglement Source for Microwave to Telecom Quantum State
    Transfer.” <i>Npj Quantum Information</i>. Springer Nature, 2019. <a href="https://doi.org/10.1038/s41534-019-0220-5">https://doi.org/10.1038/s41534-019-0220-5</a>.
  ieee: A. R. Rueda Sanchez, W. J. Hease, S. Barzanjeh, and J. M. Fink, “Electro-optic
    entanglement source for microwave to telecom quantum state transfer,” <i>npj Quantum
    Information</i>, vol. 5. Springer Nature, 2019.
  ista: Rueda Sanchez AR, Hease WJ, Barzanjeh S, Fink JM. 2019. Electro-optic entanglement
    source for microwave to telecom quantum state transfer. npj Quantum Information.
    5, 108.
  mla: Rueda Sanchez, Alfredo R., et al. “Electro-Optic Entanglement Source for Microwave
    to Telecom Quantum State Transfer.” <i>Npj Quantum Information</i>, vol. 5, 108,
    Springer Nature, 2019, doi:<a href="https://doi.org/10.1038/s41534-019-0220-5">10.1038/s41534-019-0220-5</a>.
  short: A.R. Rueda Sanchez, W.J. Hease, S. Barzanjeh, J.M. Fink, Npj Quantum Information
    5 (2019).
corr_author: '1'
date_created: 2019-12-09T08:18:56Z
date_published: 2019-12-01T00:00:00Z
date_updated: 2026-04-15T06:43:52Z
day: '01'
ddc:
- '530'
department:
- _id: JoFi
doi: 10.1038/s41534-019-0220-5
ec_funded: 1
external_id:
  arxiv:
  - '1909.01470'
  isi:
  - '000502996200003'
file:
- access_level: open_access
  checksum: 13e0ea1d4f9b5f5710780d9473364f58
  content_type: application/pdf
  creator: dernst
  date_created: 2019-12-09T08:25:06Z
  date_updated: 2020-07-14T12:47:50Z
  file_id: '7157'
  file_name: 2019_NPJ_Rueda.pdf
  file_size: 1580132
  relation: main_file
file_date_updated: 2020-07-14T12:47:50Z
has_accepted_license: '1'
intvolume: '         5'
isi: 1
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
project:
- _id: 26336814-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '758053'
  name: A Fiber Optic Transceiver for Superconducting Qubits
- _id: 258047B6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '707438'
  name: 'Microwave-to-Optical Quantum Link: Quantum Teleportation and Quantum Illumination
    with cavity Optomechanics'
- _id: 257EB838-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '732894'
  name: Hybrid Optomechanical Technologies
- _id: bdb108fd-d553-11ed-ba76-83dc74a9864f
  grant_number: F07105
  name: QUANTUM INFORMATION SYSTEMS BEYOND CLASSICAL CAPABILITIES / P5- Integration
    of Superconducting Quantum Circuits
publication: npj Quantum Information
publication_identifier:
  issn:
  - 2056-6387
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Electro-optic entanglement source for microwave to telecom quantum state transfer
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2019'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '21538'
abstract:
- lang: eng
  text: Extracting light from silicon is a longstanding challenge in modern engineering
    and physics. While silicon has underpinned the past 70 years of electronics advancement,
    a facile tunable and efficient silicon-based light source remains elusive. Here,
    we experimentally demonstrate the generation of tunable radiation from a one-dimensional,
    all-silicon nanograting. Light is generated by the spontaneous emission from the
    interaction of these nanogratings with low-energy free electrons (2–20 keV) and
    is recorded in the wavelength range of 800–1600 nm, which includes the silicon
    transparency window. Tunable free-electron-based light generation from nanoscale
    silicon gratings with efficiencies approaching those from metallic gratings is
    demonstrated. We theoretically investigate the feasibility of a scalable, compact,
    all-silicon tunable light source comprised of a silicon Field Emitter Array integrated
    with a silicon nanograting that emits at telecommunication wavelengths. Our results
    reveal the prospects of a CMOS-compatible electrically-pumped silicon light source
    for possible applications in the mid-infrared and telecommunication wavelengths.
article_number: '3176'
article_processing_charge: No
article_type: original
author:
- first_name: Charles
  full_name: Roques-Carmes, Charles
  id: e2e68fc9-6505-11ef-a541-eb4e72cc3e82
  last_name: Roques-Carmes
- first_name: Steven E.
  full_name: Kooi, Steven E.
  last_name: Kooi
- first_name: Yi
  full_name: Yang, Yi
  last_name: Yang
- first_name: Aviram
  full_name: Massuda, Aviram
  last_name: Massuda
- first_name: Phillip D.
  full_name: Keathley, Phillip D.
  last_name: Keathley
- first_name: Aun
  full_name: Zaidi, Aun
  last_name: Zaidi
- first_name: Yujia
  full_name: Yang, Yujia
  last_name: Yang
- first_name: John D.
  full_name: Joannopoulos, John D.
  last_name: Joannopoulos
- first_name: Karl K.
  full_name: Berggren, Karl K.
  last_name: Berggren
- first_name: Ido
  full_name: Kaminer, Ido
  last_name: Kaminer
- first_name: Marin
  full_name: Soljačić, Marin
  last_name: Soljačić
citation:
  ama: Roques-Carmes C, Kooi SE, Yang Y, et al. Towards integrated tunable all-silicon
    free-electron light sources. <i>Nature Communications</i>. 2019;10. doi:<a href="https://doi.org/10.1038/s41467-019-11070-7">10.1038/s41467-019-11070-7</a>
  apa: Roques-Carmes, C., Kooi, S. E., Yang, Y., Massuda, A., Keathley, P. D., Zaidi,
    A., … Soljačić, M. (2019). Towards integrated tunable all-silicon free-electron
    light sources. <i>Nature Communications</i>. Springer Nature. <a href="https://doi.org/10.1038/s41467-019-11070-7">https://doi.org/10.1038/s41467-019-11070-7</a>
  chicago: Roques-Carmes, Charles, Steven E. Kooi, Yi Yang, Aviram Massuda, Phillip
    D. Keathley, Aun Zaidi, Yujia Yang, et al. “Towards Integrated Tunable All-Silicon
    Free-Electron Light Sources.” <i>Nature Communications</i>. Springer Nature, 2019.
    <a href="https://doi.org/10.1038/s41467-019-11070-7">https://doi.org/10.1038/s41467-019-11070-7</a>.
  ieee: C. Roques-Carmes <i>et al.</i>, “Towards integrated tunable all-silicon free-electron
    light sources,” <i>Nature Communications</i>, vol. 10. Springer Nature, 2019.
  ista: Roques-Carmes C, Kooi SE, Yang Y, Massuda A, Keathley PD, Zaidi A, Yang Y,
    Joannopoulos JD, Berggren KK, Kaminer I, Soljačić M. 2019. Towards integrated
    tunable all-silicon free-electron light sources. Nature Communications. 10, 3176.
  mla: Roques-Carmes, Charles, et al. “Towards Integrated Tunable All-Silicon Free-Electron
    Light Sources.” <i>Nature Communications</i>, vol. 10, 3176, Springer Nature,
    2019, doi:<a href="https://doi.org/10.1038/s41467-019-11070-7">10.1038/s41467-019-11070-7</a>.
  short: C. Roques-Carmes, S.E. Kooi, Y. Yang, A. Massuda, P.D. Keathley, A. Zaidi,
    Y. Yang, J.D. Joannopoulos, K.K. Berggren, I. Kaminer, M. Soljačić, Nature Communications
    10 (2019).
date_created: 2026-03-30T12:22:47Z
date_published: 2019-07-18T00:00:00Z
date_updated: 2026-04-15T06:58:28Z
day: '18'
ddc:
- '530'
doi: 10.1038/s41467-019-11070-7
extern: '1'
intvolume: '        10'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1038/s41467-019-11070-7
month: '07'
oa: 1
oa_version: Published Version
publication: Nature Communications
publication_identifier:
  eissn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Towards integrated tunable all-silicon free-electron light sources
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 10
year: '2019'
...
---
OA_type: closed access
_id: '21557'
abstract:
- lang: eng
  text: "A new optical processor for solving hard optimization problems breaks previous
    size records and is based on a highly scalable technology.\r\n"
article_number: '61'
article_processing_charge: No
article_type: comment
author:
- first_name: Charles
  full_name: Roques-Carmes, Charles
  id: e2e68fc9-6505-11ef-a541-eb4e72cc3e82
  last_name: Roques-Carmes
- first_name: Marin
  full_name: Soljačić, Marin
  last_name: Soljačić
citation:
  ama: Roques-Carmes C, Soljačić M. Photonic ising machines go big. <i>Physics</i>.
    2019;12. doi:<a href="https://doi.org/10.1103/physics.12.61">10.1103/physics.12.61</a>
  apa: Roques-Carmes, C., &#38; Soljačić, M. (2019). Photonic ising machines go big.
    <i>Physics</i>. American Physical Society. <a href="https://doi.org/10.1103/physics.12.61">https://doi.org/10.1103/physics.12.61</a>
  chicago: Roques-Carmes, Charles, and Marin Soljačić. “Photonic Ising Machines Go
    Big.” <i>Physics</i>. American Physical Society, 2019. <a href="https://doi.org/10.1103/physics.12.61">https://doi.org/10.1103/physics.12.61</a>.
  ieee: C. Roques-Carmes and M. Soljačić, “Photonic ising machines go big,” <i>Physics</i>,
    vol. 12. American Physical Society, 2019.
  ista: Roques-Carmes C, Soljačić M. 2019. Photonic ising machines go big. Physics.
    12, 61.
  mla: Roques-Carmes, Charles, and Marin Soljačić. “Photonic Ising Machines Go Big.”
    <i>Physics</i>, vol. 12, 61, American Physical Society, 2019, doi:<a href="https://doi.org/10.1103/physics.12.61">10.1103/physics.12.61</a>.
  short: C. Roques-Carmes, M. Soljačić, Physics 12 (2019).
date_created: 2026-03-30T12:22:47Z
date_published: 2019-05-31T00:00:00Z
date_updated: 2026-04-15T07:05:01Z
day: '31'
ddc:
- '530'
doi: 10.1103/physics.12.61
extern: '1'
intvolume: '        12'
language:
- iso: eng
month: '05'
oa_version: None
publication: Physics
publication_identifier:
  issn:
  - 1943-2879
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Photonic ising machines go big
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2019'
...
