---
OA_place: repository
OA_type: green
_id: '22205'
abstract:
- lang: eng
  text: "A group is sofic when every finite subset can be well approximated in a finite
    symmetric group. No example of a non-sofic group is known. Higman's group, which
    is a circular amalgamation of four copies of the Baumslag–Solitar group, is a
    candidate. Here we contribute to the discussion of the problem of its soficity
    in two ways.\r\nWe construct variations on Higman's group replacing the Baumslag–Solitar
    group by other groups G. We give an elementary condition on G enjoyed for example
    by Z≀Z and the integral Heisenberg group, under which the resulting group is sofic.\r\n\r\nWe
    then use soficity to deduce that there exist permutations of Z/nZ that are seemingly
    pathological in that they have order dividing four and yet locally they behave
    like exponential functions over most of their domains. Our approach is based on
    that of Helfgott and Juschenko, who recently showed the soficity of Higman's group
    would imply some the existence of some similarly pathological functions. Our results
    call into question their suggestion that this might be a step towards proving
    the existence of a non-sofic group."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Martin
  full_name: Kassabov, Martin
  last_name: Kassabov
- first_name: Vivian Zieve
  full_name: Kuperberg, Vivian Zieve
  id: c3bac823-112d-11f0-a3f5-c264f852e697
  last_name: Kuperberg
- first_name: Timothy R.
  full_name: Riley, Timothy R.
  last_name: Riley
citation:
  ama: Kassabov M, Kuperberg VZ, Riley TR. Soficity and variations on Higman’s group.
    <i>Journal of Combinatorial Algebra</i>. 2019;3(1):41-70. doi:<a href="https://doi.org/10.4171/jca/26">10.4171/jca/26</a>
  apa: Kassabov, M., Kuperberg, V. Z., &#38; Riley, T. R. (2019). Soficity and variations
    on Higman’s group. <i>Journal of Combinatorial Algebra</i>. European Mathematical
    Society. <a href="https://doi.org/10.4171/jca/26">https://doi.org/10.4171/jca/26</a>
  chicago: Kassabov, Martin, Vivian Zieve Kuperberg, and Timothy R. Riley. “Soficity
    and Variations on Higman’s Group.” <i>Journal of Combinatorial Algebra</i>. European
    Mathematical Society, 2019. <a href="https://doi.org/10.4171/jca/26">https://doi.org/10.4171/jca/26</a>.
  ieee: M. Kassabov, V. Z. Kuperberg, and T. R. Riley, “Soficity and variations on
    Higman’s group,” <i>Journal of Combinatorial Algebra</i>, vol. 3, no. 1. European
    Mathematical Society, pp. 41–70, 2019.
  ista: Kassabov M, Kuperberg VZ, Riley TR. 2019. Soficity and variations on Higman’s
    group. Journal of Combinatorial Algebra. 3(1), 41–70.
  mla: Kassabov, Martin, et al. “Soficity and Variations on Higman’s Group.” <i>Journal
    of Combinatorial Algebra</i>, vol. 3, no. 1, European Mathematical Society, 2019,
    pp. 41–70, doi:<a href="https://doi.org/10.4171/jca/26">10.4171/jca/26</a>.
  short: M. Kassabov, V.Z. Kuperberg, T.R. Riley, Journal of Combinatorial Algebra
    3 (2019) 41–70.
date_created: 2026-06-29T13:01:27Z
date_published: 2019-02-01T00:00:00Z
date_updated: 2026-07-14T11:54:52Z
day: '01'
doi: 10.4171/jca/26
extern: '1'
external_id:
  arxiv:
  - '2406.04174'
fulldoi: https://doi.org/10.4171/jca/26
intvolume: '         3'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2406.04174
month: '02'
oa: 1
oa_version: Preprint
page: 41-70
publication: Journal of Combinatorial Algebra
publication_identifier:
  eissn:
  - 2415-6302
publication_status: published
publisher: European Mathematical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Soficity and variations on Higman’s group
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 3
year: '2019'
...
---
OA_place: publisher
OA_type: hybrid
_id: '22208'
abstract:
- lang: eng
  text: The bulk synthesis of fluorescent colloidal SU‐8 polymer rods with tunable
    dimensions is described. The colloidal SU‐8 rods are prepared by shearing an emulsion
    of SU‐8 polymer droplets and then exposing the resulting non‐Brownian rods to
    ultrasonic waves, which breaks them into colloidal rods with typical lengths of
    3.5–10 µm and diameters of 0.4–1 µm. The rods are stable in both aqueous and apolar
    solvents, and by varying the composition of apolar solvent mixtures both the difference
    in refractive index and mass density between particles and solvent can be independently
    controlled. Consequently, these colloidal SU‐8 rods can be used in both 3D confocal
    microscopy and optical trapping experiments while carefully tuning the effect
    of gravity. This is demonstrated by using confocal microscopy to image the liquid
    crystalline phases and the isotropic–nematic interface formed by the colloidal
    SU‐8 rods and by optically trapping single rods in water. Finally, the simultaneous
    confocal imaging and optical manipulation of multiple SU‐8 rods in the isotropic
    phase is shown.
article_number: '1807514'
article_processing_charge: No
article_type: original
author:
- first_name: Carla
  full_name: Fernández-Rico, Carla
  id: 492def71-6250-11f0-b278-d41dbd241b62
  last_name: Fernández-Rico
- first_name: Taiki
  full_name: Yanagishima, Taiki
  last_name: Yanagishima
- first_name: Arran
  full_name: Curran, Arran
  last_name: Curran
- first_name: Dirk G. A. L.
  full_name: Aarts, Dirk G. A. L.
  last_name: Aarts
- first_name: Roel P. A.
  full_name: Dullens, Roel P. A.
  last_name: Dullens
citation:
  ama: Fernández-Rico C, Yanagishima T, Curran A, Aarts DGAL, Dullens RPA. Synthesis
    of colloidal SU‐8 polymer rods using sonication. <i>Advanced Materials</i>. 2019;31(17).
    doi:<a href="https://doi.org/10.1002/adma.201807514">10.1002/adma.201807514</a>
  apa: Fernández-Rico, C., Yanagishima, T., Curran, A., Aarts, D. G. A. L., &#38;
    Dullens, R. P. A. (2019). Synthesis of colloidal SU‐8 polymer rods using sonication.
    <i>Advanced Materials</i>. Wiley. <a href="https://doi.org/10.1002/adma.201807514">https://doi.org/10.1002/adma.201807514</a>
  chicago: Fernández-Rico, Carla, Taiki Yanagishima, Arran Curran, Dirk G. A. L. Aarts,
    and Roel P. A. Dullens. “Synthesis of Colloidal SU‐8 Polymer Rods Using Sonication.”
    <i>Advanced Materials</i>. Wiley, 2019. <a href="https://doi.org/10.1002/adma.201807514">https://doi.org/10.1002/adma.201807514</a>.
  ieee: C. Fernández-Rico, T. Yanagishima, A. Curran, D. G. A. L. Aarts, and R. P.
    A. Dullens, “Synthesis of colloidal SU‐8 polymer rods using sonication,” <i>Advanced
    Materials</i>, vol. 31, no. 17. Wiley, 2019.
  ista: Fernández-Rico C, Yanagishima T, Curran A, Aarts DGAL, Dullens RPA. 2019.
    Synthesis of colloidal SU‐8 polymer rods using sonication. Advanced Materials.
    31(17), 1807514.
  mla: Fernández-Rico, Carla, et al. “Synthesis of Colloidal SU‐8 Polymer Rods Using
    Sonication.” <i>Advanced Materials</i>, vol. 31, no. 17, 1807514, Wiley, 2019,
    doi:<a href="https://doi.org/10.1002/adma.201807514">10.1002/adma.201807514</a>.
  short: C. Fernández-Rico, T. Yanagishima, A. Curran, D.G.A.L. Aarts, R.P.A. Dullens,
    Advanced Materials 31 (2019).
date_created: 2026-06-30T06:30:50Z
date_published: 2019-04-25T00:00:00Z
date_updated: 2026-07-15T06:22:53Z
day: '25'
ddc:
- '540'
doi: 10.1002/adma.201807514
extern: '1'
external_id:
  pmid:
  - '30869177'
fulldoi: https://doi.org/10.1002/adma.201807514
has_accepted_license: '1'
intvolume: '        31'
issue: '17'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1002/adma.201807514
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
publication: Advanced Materials
publication_identifier:
  eissn:
  - 1521-4095
  issn:
  - 0935-9648
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Synthesis of colloidal SU‐8 polymer rods using sonication
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 31
year: '2019'
...
---
OA_place: repository
OA_type: green
_id: '8305'
abstract:
- lang: eng
  text: In this paper, we present the first fully asynchronous distributed key generation
    (ADKG) algorithm as well as the first distributed key generation algorithm that
    can create keys with a dual (f,2f+1)−threshold that are necessary for scalable
    consensus (which so far needs a trusted dealer assumption). In order to create
    a DKG with a dual (f,2f+1)− threshold we first answer in the affirmative the open
    question posed by Cachin et al. how to create an AVSS protocol with recovery thresholds
    f+1<k≤2f+1, which is of independent interest. Our High-threshold-AVSS (HAVSS)
    uses an asymmetric bi-variate polynomial, where the secret shared is hidden from
    any set of k nodes but an honest node that did not participate in the sharing
    phase can still recover his share with only n−2f shares, hence be able to contribute
    in the secret reconstruction. Another building block for ADKG is a novel Eventually
    Perfect Common Coin (EPCC) abstraction and protocol that enables the participants
    to create a common coin that might fail to agree at most f+1 times (even if invoked
    a polynomial number of times). Using EPCC we implement an Eventually Efficient
    Asynchronous Binary Agreement (EEABA) in which each instance takes O(n2) bits
    and O(1) rounds in expectation, except for at most f+1 instances which may take
    O(n4) bits and O(n) rounds in total. Using EEABA we construct the first fully
    Asynchronous Distributed Key Generation (ADKG) which has the same overhead and
    expected runtime as the best partially-synchronous DKG (O(n4) words, O(n) rounds).
    As a corollary of our ADKG we can also create the first Validated Asynchronous
    Byzantine Agreement (VABA) in the authenticated setting that does not need a trusted
    dealer to setup threshold signatures of degree n−f. Our VABA has an overhead of
    expected O(n2) words and O(1) time per instance after an initial O(n4) words and
    O(n) time bootstrap via ADKG.
article_number: 2019/1015
article_processing_charge: No
author:
- first_name: Eleftherios
  full_name: KOKORIS KOGIAS, Eleftherios
  id: f5983044-d7ef-11ea-ac6d-fd1430a26d30
  last_name: KOKORIS KOGIAS
  orcid: 0000-0002-8827-3382
- first_name: Alexander
  full_name: Spiegelman, Alexander
  last_name: Spiegelman
- first_name: Dahlia
  full_name: Malkhi, Dahlia
  last_name: Malkhi
- first_name: Ittai
  full_name: Abraham, Ittai
  last_name: Abraham
citation:
  ama: 'Kokoris Kogias E, Spiegelman A, Malkhi D, Abraham I. Bootstrapping consensus
    without trusted setup: Fully asynchronous distributed key generation. <i>Cryptology
    ePrint Archive</i>.'
  apa: 'Kokoris Kogias, E., Spiegelman, A., Malkhi, D., &#38; Abraham, I. (n.d.).
    Bootstrapping consensus without trusted setup: Fully asynchronous distributed
    key generation. <i>Cryptology ePrint Archive</i>.'
  chicago: 'Kokoris Kogias, Eleftherios, Alexander Spiegelman, Dahlia Malkhi, and
    Ittai Abraham. “Bootstrapping Consensus without Trusted Setup: Fully Asynchronous
    Distributed Key Generation.” <i>Cryptology EPrint Archive</i>, n.d.'
  ieee: 'E. Kokoris Kogias, A. Spiegelman, D. Malkhi, and I. Abraham, “Bootstrapping
    consensus without trusted setup: Fully asynchronous distributed key generation,”
    <i>Cryptology ePrint Archive</i>. .'
  ista: 'Kokoris Kogias E, Spiegelman A, Malkhi D, Abraham I. Bootstrapping consensus
    without trusted setup: Fully asynchronous distributed key generation. Cryptology
    ePrint Archive, 2019/1015.'
  mla: 'Kokoris Kogias, Eleftherios, et al. “Bootstrapping Consensus without Trusted
    Setup: Fully Asynchronous Distributed Key Generation.” <i>Cryptology EPrint Archive</i>,
    2019/1015.'
  short: E. Kokoris Kogias, A. Spiegelman, D. Malkhi, I. Abraham, Cryptology EPrint
    Archive (n.d.).
cryptoeprintid: 1
das_tickbox: '1'
date_created: 2020-08-26T12:18:00Z
date_published: 2019-09-10T00:00:00Z
date_updated: 2026-07-22T06:28:46Z
day: '10'
department:
- _id: ElKo
external_id:
  cryptoeprintid:
  - 2019/1015
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://eprint.iacr.org/2019/1015
month: '09'
oa: 1
oa_version: Preprint
publication: Cryptology ePrint Archive
publication_status: submitted
status: public
title: 'Bootstrapping consensus without trusted setup: Fully asynchronous distributed
  key generation'
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2019'
...
---
OA_place: publisher
OA_type: hybrid
_id: '6856'
abstract:
- lang: eng
  text: 'Plant mating systems play a key role in structuring genetic variation both
    within and between species. In hybrid zones, the outcomes and dynamics of hybridization
    are usually interpreted as the balance between gene flow and selection against
    hybrids. Yet, mating systems can introduce selective forces that alter these expectations;
    with diverse outcomes for the level and direction of gene flow depending on variation
    in outcrossing and whether the mating systems of the species pair are the same
    or divergent. We present a survey of hybridization in 133 species pairs from 41
    plant families and examine how patterns of hybridization vary with mating system.
    We examine if hybrid zone mode, level of gene flow, asymmetries in gene flow and
    the frequency of reproductive isolating barriers vary in relation to mating system/s
    of the species pair. We combine these results with a simulation model and examples
    from the literature to address two general themes: (i) the two‐way interaction
    between introgression and the evolution of reproductive systems, and (ii) how
    mating system can facilitate or restrict interspecific gene flow. We conclude
    that examining mating system with hybridization provides unique opportunities
    to understand divergence and the processes underlying reproductive isolation.'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Melinda
  full_name: Pickup, Melinda
  id: 2C78037E-F248-11E8-B48F-1D18A9856A87
  last_name: Pickup
  orcid: 0000-0001-6118-0541
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
- first_name: Yaniv
  full_name: Brandvain, Yaniv
  last_name: Brandvain
- first_name: Christelle
  full_name: Fraisse, Christelle
  id: 32DF5794-F248-11E8-B48F-1D18A9856A87
  last_name: Fraisse
  orcid: 0000-0001-8441-5075
- first_name: Sarah
  full_name: Yakimowski, Sarah
  last_name: Yakimowski
- first_name: Tanmay
  full_name: Dixit, Tanmay
  last_name: Dixit
- first_name: Christian
  full_name: Lexer, Christian
  last_name: Lexer
- first_name: Eva
  full_name: Cereghetti, Eva
  id: 71AA91B4-05ED-11EA-8BEB-F5833E63BD63
  last_name: Cereghetti
- first_name: David
  full_name: Field, David
  id: 419049E2-F248-11E8-B48F-1D18A9856A87
  last_name: Field
  orcid: 0000-0002-4014-8478
citation:
  ama: 'Pickup M, Barton NH, Brandvain Y, et al. Mating system variation in hybrid
    zones: Facilitation, barriers and asymmetries to gene flow. <i>New Phytologist</i>.
    2019;224(3):1035-1047. doi:<a href="https://doi.org/10.1111/nph.16180">10.1111/nph.16180</a>'
  apa: 'Pickup, M., Barton, N. H., Brandvain, Y., Fraisse, C., Yakimowski, S., Dixit,
    T., … Field, D. (2019). Mating system variation in hybrid zones: Facilitation,
    barriers and asymmetries to gene flow. <i>New Phytologist</i>. Wiley. <a href="https://doi.org/10.1111/nph.16180">https://doi.org/10.1111/nph.16180</a>'
  chicago: 'Pickup, Melinda, Nicholas H Barton, Yaniv Brandvain, Christelle Fraisse,
    Sarah Yakimowski, Tanmay Dixit, Christian Lexer, Eva Cereghetti, and David Field.
    “Mating System Variation in Hybrid Zones: Facilitation, Barriers and Asymmetries
    to Gene Flow.” <i>New Phytologist</i>. Wiley, 2019. <a href="https://doi.org/10.1111/nph.16180">https://doi.org/10.1111/nph.16180</a>.'
  ieee: 'M. Pickup <i>et al.</i>, “Mating system variation in hybrid zones: Facilitation,
    barriers and asymmetries to gene flow,” <i>New Phytologist</i>, vol. 224, no.
    3. Wiley, pp. 1035–1047, 2019.'
  ista: 'Pickup M, Barton NH, Brandvain Y, Fraisse C, Yakimowski S, Dixit T, Lexer
    C, Cereghetti E, Field D. 2019. Mating system variation in hybrid zones: Facilitation,
    barriers and asymmetries to gene flow. New Phytologist. 224(3), 1035–1047.'
  mla: 'Pickup, Melinda, et al. “Mating System Variation in Hybrid Zones: Facilitation,
    Barriers and Asymmetries to Gene Flow.” <i>New Phytologist</i>, vol. 224, no.
    3, Wiley, 2019, pp. 1035–47, doi:<a href="https://doi.org/10.1111/nph.16180">10.1111/nph.16180</a>.'
  short: M. Pickup, N.H. Barton, Y. Brandvain, C. Fraisse, S. Yakimowski, T. Dixit,
    C. Lexer, E. Cereghetti, D. Field, New Phytologist 224 (2019) 1035–1047.
date_created: 2019-09-07T14:35:40Z
date_published: 2019-11-01T00:00:00Z
date_updated: 2026-07-28T13:22:14Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1111/nph.16180
ec_funded: 1
external_id:
  pmid:
  - '31505037'
file:
- access_level: open_access
  checksum: 21e4c95599bbcaf7c483b89954658672
  content_type: application/pdf
  creator: dernst
  date_created: 2019-11-13T08:15:05Z
  date_updated: 2020-07-14T12:47:42Z
  file_id: '7011'
  file_name: 2019_NewPhytologist_Pickup.pdf
  file_size: 1511958
  relation: main_file
file_date_updated: 2020-07-14T12:47:42Z
fulldoi: https://doi.org/10.1111/nph.16180
has_accepted_license: '1'
intvolume: '       224'
issue: '3'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 1035-1047
pmid: 1
project:
- _id: 25B36484-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '329960'
  name: Mating system and the evolutionary dynamics of hybrid zones
- _id: 2662AADE-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: M02463
  name: Sex chromosomes and species barriers
publication: New Phytologist
publication_identifier:
  eissn:
  - 1469-8137
  issn:
  - 0028-646X
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Mating system variation in hybrid zones: Facilitation, barriers and asymmetries
  to gene flow'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 224
year: '2019'
...
---
OA_place: publisher
OA_type: hybrid
_id: '6788'
abstract:
- lang: eng
  text: We consider the Nelson model with ultraviolet cutoff, which describes the
    interaction between non-relativistic particles and a positive or zero mass quantized
    scalar field. We take the non-relativistic particles to obey Fermi statistics
    and discuss the time evolution in a mean-field limit of many fermions. In this
    case, the limit is known to be also a semiclassical limit. We prove convergence
    in terms of reduced density matrices of the many-body state to a tensor product
    of a Slater determinant with semiclassical structure and a coherent state, which
    evolve according to a fermionic version of the Schrödinger–Klein–Gordon equations.
acknowledgement: 'Open access funding provided by Institute of Science and Technology
  (IST Austria). We would like to thank Peter Pickl and Robert Seiringer for fruitful
  discussions, and the anonymous referees for their valuable comments and suggestions.
  Moreover, we would like to thank Niels Benedikter and László Erdős for helpful remarks
  about the semiclassical structure and the Schrödinger–Klein–Gordon equations. N.
  L. gratefully acknowledges financial support by the European Research Council (ERC)
  under the European Union’s Horizon 2020 research and innovation program (Grant Agreement
  No. 694227) and funding for his stay at Princeton University from the project “Effective
  One-Particle Equations for Correlated Many-Particle-(Coulomb) Systems: Derivation
  and Properties” (Project No. 318342445) of the German Research Foundation (DFG).
  S. P. gratefully acknowledges support from the German Academic Exchange Service
  (DAAD) and the National Science Foundation under Agreement No. DMS-1128155. Moreover,
  we would like to thank Princeton University and the Institute for Advanced Study
  for their hospitality. S. P. would additionally like to thank the University of
  Washington for hospitality.'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Nikolai K
  full_name: Leopold, Nikolai K
  id: 4BC40BEC-F248-11E8-B48F-1D18A9856A87
  last_name: Leopold
  orcid: 0000-0002-0495-6822
- first_name: Sören P
  full_name: Petrat, Sören P
  id: 40AC02DC-F248-11E8-B48F-1D18A9856A87
  last_name: Petrat
  orcid: 0000-0002-9166-5889
citation:
  ama: Leopold NK, Petrat SP. Mean-field dynamics for the Nelson model with fermions.
    <i>Annales Henri Poincare</i>. 2019;20(10):3471–3508. doi:<a href="https://doi.org/10.1007/s00023-019-00828-w">10.1007/s00023-019-00828-w</a>
  apa: Leopold, N. K., &#38; Petrat, S. P. (2019). Mean-field dynamics for the Nelson
    model with fermions. <i>Annales Henri Poincare</i>. Springer Nature. <a href="https://doi.org/10.1007/s00023-019-00828-w">https://doi.org/10.1007/s00023-019-00828-w</a>
  chicago: Leopold, Nikolai K, and Sören P Petrat. “Mean-Field Dynamics for the Nelson
    Model with Fermions.” <i>Annales Henri Poincare</i>. Springer Nature, 2019. <a
    href="https://doi.org/10.1007/s00023-019-00828-w">https://doi.org/10.1007/s00023-019-00828-w</a>.
  ieee: N. K. Leopold and S. P. Petrat, “Mean-field dynamics for the Nelson model
    with fermions,” <i>Annales Henri Poincare</i>, vol. 20, no. 10. Springer Nature,
    pp. 3471–3508, 2019.
  ista: Leopold NK, Petrat SP. 2019. Mean-field dynamics for the Nelson model with
    fermions. Annales Henri Poincare. 20(10), 3471–3508.
  mla: Leopold, Nikolai K., and Sören P. Petrat. “Mean-Field Dynamics for the Nelson
    Model with Fermions.” <i>Annales Henri Poincare</i>, vol. 20, no. 10, Springer
    Nature, 2019, pp. 3471–3508, doi:<a href="https://doi.org/10.1007/s00023-019-00828-w">10.1007/s00023-019-00828-w</a>.
  short: N.K. Leopold, S.P. Petrat, Annales Henri Poincare 20 (2019) 3471–3508.
corr_author: '1'
date_created: 2019-08-11T21:59:21Z
date_published: 2019-10-01T00:00:00Z
date_updated: 2026-07-28T13:24:14Z
day: '01'
ddc:
- '510'
department:
- _id: RoSe
doi: 10.1007/s00023-019-00828-w
ec_funded: 1
external_id:
  arxiv:
  - '1807.06781'
  isi:
  - '000487036900008'
file:
- access_level: open_access
  checksum: b6dbf0d837d809293d449adf77138904
  content_type: application/pdf
  creator: dernst
  date_created: 2019-08-12T12:05:58Z
  date_updated: 2020-07-14T12:47:40Z
  file_id: '6801'
  file_name: 2019_AnnalesHenriPoincare_Leopold.pdf
  file_size: 681139
  relation: main_file
file_date_updated: 2020-07-14T12:47:40Z
fulldoi: https://doi.org/10.1007/s00023-019-00828-w
has_accepted_license: '1'
intvolume: '        20'
isi: 1
issue: '10'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 3471–3508
project:
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694227'
  name: Analysis of quantum many-body systems
publication: Annales Henri Poincare
publication_identifier:
  eissn:
  - 1424-0661
  issn:
  - 1424-0637
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mean-field dynamics for the Nelson model with fermions
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 20
year: '2019'
...
---
OA_place: publisher
OA_type: hybrid
_id: '7100'
abstract:
- lang: eng
  text: We present microscopic derivations of the defocusing two-dimensional cubic
    nonlinear Schrödinger equation and the Gross–Pitaevskii equation starting froman
    interacting N-particle system of bosons. We consider the interaction potential
    to be given either by Wβ(x)=N−1+2βW(Nβx), for any β>0, or to be given by VN(x)=e2NV(eNx),
    for some spherical symmetric, nonnegative and compactly supported W,V∈L∞(R2,R).
    In both cases we prove the convergence of the reduced density corresponding to
    the exact time evolution to the projector onto the solution of the corresponding
    nonlinear Schrödinger equation in trace norm. For the latter potential VN we show
    that it is crucial to take the microscopic structure of the condensate into account
    in order to obtain the correct dynamics.
acknowledgement: OA fund by IST Austria
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Maximilian
  full_name: Jeblick, Maximilian
  last_name: Jeblick
- first_name: Nikolai K
  full_name: Leopold, Nikolai K
  id: 4BC40BEC-F248-11E8-B48F-1D18A9856A87
  last_name: Leopold
  orcid: 0000-0002-0495-6822
- first_name: Peter
  full_name: Pickl, Peter
  last_name: Pickl
citation:
  ama: Jeblick M, Leopold NK, Pickl P. Derivation of the time dependent Gross–Pitaevskii
    equation in two dimensions. <i>Communications in Mathematical Physics</i>. 2019;372(1):1-69.
    doi:<a href="https://doi.org/10.1007/s00220-019-03599-x">10.1007/s00220-019-03599-x</a>
  apa: Jeblick, M., Leopold, N. K., &#38; Pickl, P. (2019). Derivation of the time
    dependent Gross–Pitaevskii equation in two dimensions. <i>Communications in Mathematical
    Physics</i>. Springer Nature. <a href="https://doi.org/10.1007/s00220-019-03599-x">https://doi.org/10.1007/s00220-019-03599-x</a>
  chicago: Jeblick, Maximilian, Nikolai K Leopold, and Peter Pickl. “Derivation of
    the Time Dependent Gross–Pitaevskii Equation in Two Dimensions.” <i>Communications
    in Mathematical Physics</i>. Springer Nature, 2019. <a href="https://doi.org/10.1007/s00220-019-03599-x">https://doi.org/10.1007/s00220-019-03599-x</a>.
  ieee: M. Jeblick, N. K. Leopold, and P. Pickl, “Derivation of the time dependent
    Gross–Pitaevskii equation in two dimensions,” <i>Communications in Mathematical
    Physics</i>, vol. 372, no. 1. Springer Nature, pp. 1–69, 2019.
  ista: Jeblick M, Leopold NK, Pickl P. 2019. Derivation of the time dependent Gross–Pitaevskii
    equation in two dimensions. Communications in Mathematical Physics. 372(1), 1–69.
  mla: Jeblick, Maximilian, et al. “Derivation of the Time Dependent Gross–Pitaevskii
    Equation in Two Dimensions.” <i>Communications in Mathematical Physics</i>, vol.
    372, no. 1, Springer Nature, 2019, pp. 1–69, doi:<a href="https://doi.org/10.1007/s00220-019-03599-x">10.1007/s00220-019-03599-x</a>.
  short: M. Jeblick, N.K. Leopold, P. Pickl, Communications in Mathematical Physics
    372 (2019) 1–69.
corr_author: '1'
date_created: 2019-11-25T08:08:02Z
date_published: 2019-11-08T00:00:00Z
date_updated: 2026-07-28T13:04:54Z
day: '08'
ddc:
- '510'
department:
- _id: RoSe
doi: 10.1007/s00220-019-03599-x
ec_funded: 1
external_id:
  isi:
  - '000495193700002'
file:
- access_level: open_access
  checksum: cd283b475dd739e04655315abd46f528
  content_type: application/pdf
  creator: dernst
  date_created: 2019-11-25T08:11:11Z
  date_updated: 2020-07-14T12:47:49Z
  file_id: '7101'
  file_name: 2019_CommMathPhys_Jeblick.pdf
  file_size: 884469
  relation: main_file
file_date_updated: 2020-07-14T12:47:49Z
fulldoi: https://doi.org/10.1007/s00220-019-03599-x
has_accepted_license: '1'
intvolume: '       372'
isi: 1
issue: '1'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 1-69
project:
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694227'
  name: Analysis of quantum many-body systems
publication: Communications in Mathematical Physics
publication_identifier:
  eissn:
  - 1432-0916
  issn:
  - 0010-3616
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Derivation of the time dependent Gross–Pitaevskii equation in two dimensions
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 372
year: '2019'
...
---
OA_type: closed access
_id: '6890'
abstract:
- lang: eng
  text: Describing the protein interactions that form pleomorphic and asymmetric viruses
    represents a considerable challenge to most structural biology techniques, including
    X-ray crystallography and single particle cryo-electron microscopy. Obtaining
    a detailed understanding of these interactions is nevertheless important, considering
    the number of relevant human pathogens that do not follow strict icosahedral or
    helical symmetry. Cryo-electron tomography and subtomogram averaging methods provide
    structural insights into complex biological environments and are well suited to
    go beyond structures of perfectly symmetric viruses. This chapter discusses recent
    developments showing that cryo-ET and subtomogram averaging can provide high-resolution
    insights into hitherto unknown structural features of pleomorphic and asymmetric
    virus particles. It also describes how these methods have significantly added
    to our understanding of retrovirus capsid assemblies in immature and mature viruses.
    Additional examples of irregular viruses and their associated proteins, whose
    structures have been studied via cryo-ET and subtomogram averaging, further support
    the versatility of these methods.
article_processing_charge: No
author:
- first_name: Martin
  full_name: Obr, Martin
  id: 4741CA5A-F248-11E8-B48F-1D18A9856A87
  last_name: Obr
  orcid: 0000-0003-1756-6564
- first_name: Florian KM
  full_name: Schur, Florian KM
  id: 48AD8942-F248-11E8-B48F-1D18A9856A87
  last_name: Schur
  orcid: 0000-0003-4790-8078
citation:
  ama: 'Obr M, Schur FK. Structural analysis of pleomorphic and asymmetric viruses
    using cryo-electron tomography and subtomogram averaging. In: Rey FA, ed. <i>Complementary
    Strategies to Study Virus Structure and Function</i>. Vol 105. Advances in Virus
    Research. Elsevier; 2019:117-159. doi:<a href="https://doi.org/10.1016/bs.aivir.2019.07.008">10.1016/bs.aivir.2019.07.008</a>'
  apa: Obr, M., &#38; Schur, F. K. (2019). Structural analysis of pleomorphic and
    asymmetric viruses using cryo-electron tomography and subtomogram averaging. In
    F. A. Rey (Ed.), <i>Complementary Strategies to Study Virus Structure and Function</i>
    (Vol. 105, pp. 117–159). Elsevier. <a href="https://doi.org/10.1016/bs.aivir.2019.07.008">https://doi.org/10.1016/bs.aivir.2019.07.008</a>
  chicago: Obr, Martin, and Florian KM Schur. “Structural Analysis of Pleomorphic
    and Asymmetric Viruses Using Cryo-Electron Tomography and Subtomogram Averaging.”
    In <i>Complementary Strategies to Study Virus Structure and Function</i>, edited
    by Félix A. Rey, 105:117–59. Advances in Virus Research. Elsevier, 2019. <a href="https://doi.org/10.1016/bs.aivir.2019.07.008">https://doi.org/10.1016/bs.aivir.2019.07.008</a>.
  ieee: M. Obr and F. K. Schur, “Structural analysis of pleomorphic and asymmetric
    viruses using cryo-electron tomography and subtomogram averaging,” in <i>Complementary
    Strategies to Study Virus Structure and Function</i>, vol. 105, F. A. Rey, Ed.
    Elsevier, 2019, pp. 117–159.
  ista: 'Obr M, Schur FK. 2019.Structural analysis of pleomorphic and asymmetric viruses
    using cryo-electron tomography and subtomogram averaging. In: Complementary Strategies
    to Study Virus Structure and Function. vol. 105, 117–159.'
  mla: Obr, Martin, and Florian KM Schur. “Structural Analysis of Pleomorphic and
    Asymmetric Viruses Using Cryo-Electron Tomography and Subtomogram Averaging.”
    <i>Complementary Strategies to Study Virus Structure and Function</i>, edited
    by Félix A. Rey, vol. 105, Elsevier, 2019, pp. 117–59, doi:<a href="https://doi.org/10.1016/bs.aivir.2019.07.008">10.1016/bs.aivir.2019.07.008</a>.
  short: M. Obr, F.K. Schur, in:, F.A. Rey (Ed.), Complementary Strategies to Study
    Virus Structure and Function, Elsevier, 2019, pp. 117–159.
date_created: 2019-09-18T08:15:37Z
date_published: 2019-08-27T00:00:00Z
date_updated: 2026-07-28T13:14:51Z
day: '27'
department:
- _id: FlSc
doi: 10.1016/bs.aivir.2019.07.008
editor:
- first_name: Félix A.
  full_name: Rey, Félix A.
  last_name: Rey
external_id:
  isi:
  - '000501594500006'
  pmid:
  - '31522703'
fulldoi: https://doi.org/10.1016/bs.aivir.2019.07.008
intvolume: '       105'
isi: 1
language:
- iso: eng
month: '08'
oa_version: None
page: 117-159
pmid: 1
publication: Complementary Strategies to Study Virus Structure and Function
publication_identifier:
  isbn:
  - '9780128184561'
  issn:
  - 0065-3527
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
series_title: Advances in Virus Research
status: public
title: Structural analysis of pleomorphic and asymmetric viruses using cryo-electron
  tomography and subtomogram averaging
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 105
year: '2019'
...
---
OA_place: publisher
_id: '6989'
abstract:
- lang: eng
  text: 'When can a polyomino piece of paper be folded into a unit cube? Prior work
    studied tree-like polyominoes, but polyominoes with holes remain an intriguing
    open problem. We present sufficient conditions for a polyomino with hole(s) to
    fold into a cube, and conditions under which cube folding is impossible. In particular,
    we show that all but five special simple holes guarantee foldability. '
acknowledgement: This research was performed in part at the 33rd Bellairs Winter Workshop
  on Computational  Geometry. We thank all other participants for a fruitful atmosphere.
article_processing_charge: No
arxiv: 1
author:
- first_name: Oswin
  full_name: Aichholzer, Oswin
  last_name: Aichholzer
- first_name: Hugo A
  full_name: Akitaya, Hugo A
  last_name: Akitaya
- first_name: Kenneth C
  full_name: Cheung, Kenneth C
  last_name: Cheung
- first_name: Erik D
  full_name: Demaine, Erik D
  last_name: Demaine
- first_name: Martin L
  full_name: Demaine, Martin L
  last_name: Demaine
- first_name: Sandor P
  full_name: Fekete, Sandor P
  last_name: Fekete
- first_name: Linda
  full_name: Kleist, Linda
  last_name: Kleist
- first_name: Irina
  full_name: Kostitsyna, Irina
  last_name: Kostitsyna
- first_name: Maarten
  full_name: Löffler, Maarten
  last_name: Löffler
- first_name: Zuzana
  full_name: Masárová, Zuzana
  id: 45CFE238-F248-11E8-B48F-1D18A9856A87
  last_name: Masárová
  orcid: 0000-0002-6660-1322
- first_name: Klara
  full_name: Mundilova, Klara
  last_name: Mundilova
- first_name: Christiane
  full_name: Schmidt, Christiane
  last_name: Schmidt
citation:
  ama: 'Aichholzer O, Akitaya HA, Cheung KC, et al. Folding polyominoes with holes
    into a cube. In: <i>Proceedings of the 31st Canadian Conference on Computational
    Geometry</i>. Canadian Conference on Computational Geometry; 2019:164-170.'
  apa: 'Aichholzer, O., Akitaya, H. A., Cheung, K. C., Demaine, E. D., Demaine, M.
    L., Fekete, S. P., … Schmidt, C. (2019). Folding polyominoes with holes into a
    cube. In <i>Proceedings of the 31st Canadian Conference on Computational Geometry</i>
    (pp. 164–170). Edmonton, Canada: Canadian Conference on Computational Geometry.'
  chicago: Aichholzer, Oswin, Hugo A Akitaya, Kenneth C Cheung, Erik D Demaine, Martin
    L Demaine, Sandor P Fekete, Linda Kleist, et al. “Folding Polyominoes with Holes
    into a Cube.” In <i>Proceedings of the 31st Canadian Conference on Computational
    Geometry</i>, 164–70. Canadian Conference on Computational Geometry, 2019.
  ieee: O. Aichholzer <i>et al.</i>, “Folding polyominoes with holes into a cube,”
    in <i>Proceedings of the 31st Canadian Conference on Computational Geometry</i>,
    Edmonton, Canada, 2019, pp. 164–170.
  ista: 'Aichholzer O, Akitaya HA, Cheung KC, Demaine ED, Demaine ML, Fekete SP, Kleist
    L, Kostitsyna I, Löffler M, Masárová Z, Mundilova K, Schmidt C. 2019. Folding
    polyominoes with holes into a cube. Proceedings of the 31st Canadian Conference
    on Computational Geometry. CCCG: Canadian Conference in Computational Geometry,
    164–170.'
  mla: Aichholzer, Oswin, et al. “Folding Polyominoes with Holes into a Cube.” <i>Proceedings
    of the 31st Canadian Conference on Computational Geometry</i>, Canadian Conference
    on Computational Geometry, 2019, pp. 164–70.
  short: O. Aichholzer, H.A. Akitaya, K.C. Cheung, E.D. Demaine, M.L. Demaine, S.P.
    Fekete, L. Kleist, I. Kostitsyna, M. Löffler, Z. Masárová, K. Mundilova, C. Schmidt,
    in:, Proceedings of the 31st Canadian Conference on Computational Geometry, Canadian
    Conference on Computational Geometry, 2019, pp. 164–170.
conference:
  end_date: 2019-08-10
  location: Edmonton, Canada
  name: 'CCCG: Canadian Conference in Computational Geometry'
  start_date: 2019-08-08
date_created: 2019-11-04T16:46:11Z
date_published: 2019-08-01T00:00:00Z
date_updated: 2026-07-28T13:08:49Z
day: '01'
ddc:
- '500'
department:
- _id: HeEd
external_id:
  arxiv:
  - '1910.09917'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://sites.ualberta.ca/~cccg2019/cccg2019_proceedings.pdf
month: '08'
oa: 1
oa_version: Published Version
page: 164-170
publication: Proceedings of the 31st Canadian Conference on Computational Geometry
publication_status: published
publisher: Canadian Conference on Computational Geometry
quality_controlled: '1'
related_material:
  record:
  - id: '8317'
    relation: extended_version
    status: public
scopus_import: '1'
status: public
title: Folding polyominoes with holes into a cube
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2019'
...
---
_id: '6419'
abstract:
- lang: eng
  text: Characterizing the fitness landscape, a representation of fitness for a large
    set of genotypes, is key to understanding how genetic information is interpreted
    to create functional organisms. Here we determined the evolutionarily-relevant
    segment of the fitness landscape of His3, a gene coding for an enzyme in the histidine
    synthesis pathway, focusing on combinations of amino acid states found at orthologous
    sites of extant species. Just 15% of amino acids found in yeast His3 orthologues
    were always neutral while the impact on fitness of the remaining 85% depended
    on the genetic background. Furthermore, at 67% of sites, amino acid replacements
    were under sign epistasis, having both strongly positive and negative effect in
    different genetic backgrounds. 46% of sites were under reciprocal sign epistasis.
    The fitness impact of amino acid replacements was influenced by only a few genetic
    backgrounds but involved interaction of multiple sites, shaping a rugged fitness
    landscape in which many of the shortest paths between highly fit genotypes are
    inaccessible.
article_number: e1008079
article_processing_charge: No
author:
- first_name: Victoria
  full_name: Pokusaeva, Victoria
  id: 3184041C-F248-11E8-B48F-1D18A9856A87
  last_name: Pokusaeva
  orcid: 0000-0001-7660-444X
- first_name: Dinara R.
  full_name: Usmanova, Dinara R.
  last_name: Usmanova
- first_name: Ekaterina
  full_name: Putintseva, Ekaterina
  id: 2EF67C84-F248-11E8-B48F-1D18A9856A87
  last_name: Putintseva
- first_name: Lorena
  full_name: Espinar, Lorena
  last_name: Espinar
- first_name: Karen
  full_name: Sarkisyan, Karen
  id: 39A7BF80-F248-11E8-B48F-1D18A9856A87
  last_name: Sarkisyan
  orcid: 0000-0002-5375-6341
- first_name: Alexander S.
  full_name: Mishin, Alexander S.
  last_name: Mishin
- first_name: Natalya S.
  full_name: Bogatyreva, Natalya S.
  last_name: Bogatyreva
- first_name: Dmitry
  full_name: Ivankov, Dmitry
  id: 49FF1036-F248-11E8-B48F-1D18A9856A87
  last_name: Ivankov
  orcid: 0000-0002-8224-4118
- first_name: Arseniy
  full_name: Akopyan, Arseniy
  id: 430D2C90-F248-11E8-B48F-1D18A9856A87
  last_name: Akopyan
  orcid: 0000-0002-2548-617X
- first_name: Sergey
  full_name: Avvakumov, Sergey
  id: 3827DAC8-F248-11E8-B48F-1D18A9856A87
  last_name: Avvakumov
  orcid: 0000-0002-7840-5062
- first_name: Inna S.
  full_name: Povolotskaya, Inna S.
  last_name: Povolotskaya
- first_name: Guillaume J.
  full_name: Filion, Guillaume J.
  last_name: Filion
- first_name: Lucas B.
  full_name: Carey, Lucas B.
  last_name: Carey
- first_name: Fyodor
  full_name: Kondrashov, Fyodor
  id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
  last_name: Kondrashov
  orcid: 0000-0001-8243-4694
citation:
  ama: Pokusaeva V, Usmanova DR, Putintseva E, et al. An experimental assay of the
    interactions of amino acids from orthologous sequences shaping a complex fitness
    landscape. <i>PLoS Genetics</i>. 2019;15(4). doi:<a href="https://doi.org/10.1371/journal.pgen.1008079">10.1371/journal.pgen.1008079</a>
  apa: Pokusaeva, V., Usmanova, D. R., Putintseva, E., Espinar, L., Sarkisyan, K.,
    Mishin, A. S., … Kondrashov, F. (2019). An experimental assay of the interactions
    of amino acids from orthologous sequences shaping a complex fitness landscape.
    <i>PLoS Genetics</i>. Public Library of Science. <a href="https://doi.org/10.1371/journal.pgen.1008079">https://doi.org/10.1371/journal.pgen.1008079</a>
  chicago: Pokusaeva, Victoria, Dinara R. Usmanova, Ekaterina Putintseva, Lorena Espinar,
    Karen Sarkisyan, Alexander S. Mishin, Natalya S. Bogatyreva, et al. “An Experimental
    Assay of the Interactions of Amino Acids from Orthologous Sequences Shaping a
    Complex Fitness Landscape.” <i>PLoS Genetics</i>. Public Library of Science, 2019.
    <a href="https://doi.org/10.1371/journal.pgen.1008079">https://doi.org/10.1371/journal.pgen.1008079</a>.
  ieee: V. Pokusaeva <i>et al.</i>, “An experimental assay of the interactions of
    amino acids from orthologous sequences shaping a complex fitness landscape,” <i>PLoS
    Genetics</i>, vol. 15, no. 4. Public Library of Science, 2019.
  ista: Pokusaeva V, Usmanova DR, Putintseva E, Espinar L, Sarkisyan K, Mishin AS,
    Bogatyreva NS, Ivankov D, Akopyan A, Avvakumov S, Povolotskaya IS, Filion GJ,
    Carey LB, Kondrashov F. 2019. An experimental assay of the interactions of amino
    acids from orthologous sequences shaping a complex fitness landscape. PLoS Genetics.
    15(4), e1008079.
  mla: Pokusaeva, Victoria, et al. “An Experimental Assay of the Interactions of Amino
    Acids from Orthologous Sequences Shaping a Complex Fitness Landscape.” <i>PLoS
    Genetics</i>, vol. 15, no. 4, e1008079, Public Library of Science, 2019, doi:<a
    href="https://doi.org/10.1371/journal.pgen.1008079">10.1371/journal.pgen.1008079</a>.
  short: V. Pokusaeva, D.R. Usmanova, E. Putintseva, L. Espinar, K. Sarkisyan, A.S.
    Mishin, N.S. Bogatyreva, D. Ivankov, A. Akopyan, S. Avvakumov, I.S. Povolotskaya,
    G.J. Filion, L.B. Carey, F. Kondrashov, PLoS Genetics 15 (2019).
date_created: 2019-05-13T07:58:38Z
date_published: 2019-04-10T00:00:00Z
date_updated: 2026-07-28T13:29:02Z
day: '10'
ddc:
- '570'
department:
- _id: FyKo
doi: 10.1371/journal.pgen.1008079
ec_funded: 1
external_id:
  isi:
  - '000466866000029'
file:
- access_level: open_access
  checksum: cf3889c8a8a16053dacf9c3776cbe217
  content_type: application/pdf
  creator: dernst
  date_created: 2019-05-14T08:26:08Z
  date_updated: 2020-07-14T12:47:30Z
  file_id: '6445'
  file_name: 2019_PLOSGenetics_Pokusaeva.pdf
  file_size: 3726017
  relation: main_file
file_date_updated: 2020-07-14T12:47:30Z
fulldoi: https://doi.org/10.1371/journal.pgen.1008079
has_accepted_license: '1'
intvolume: '        15'
isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
project:
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
publication: PLoS Genetics
publication_identifier:
  eissn:
  - 1553-7404
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
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scopus_import: '1'
status: public
title: An experimental assay of the interactions of amino acids from orthologous sequences
  shaping a complex fitness landscape
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 15
year: '2019'
...
---
OA_place: publisher
OA_type: hybrid
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abstract:
- lang: eng
  text: "The order-k Voronoi tessellation of a locally finite set \U0001D44B⊆ℝ\U0001D45B
    decomposes ℝ\U0001D45B into convex domains whose points have the same k nearest
    neighbors in X. Assuming X is a stationary Poisson point process, we give explicit
    formulas for the expected number and total area of faces of a given dimension
    per unit volume of space. We also develop a relaxed version of discrete Morse
    theory and generalize by counting only faces, for which the k nearest points in
    X are within a given distance threshold."
acknowledgement: "Open access funding provided by Institute of Science and Technology
  (IST Austria). This project has received funding from the European Research Council
  (ERC) under the European Union’s Horizon 2020 research and innovation programme
  (Grant Agreement No. 78818 Alpha). It is also partially supported by the DFG Collaborative
  Research Center TRR 109, ‘Discretization in Geometry and Dynamics’, through Grant
  No. I02979-N35 of the Austrian Science Fund (FWF).\r\n\r\n"
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Anton
  full_name: Nikitenko, Anton
  id: 3E4FF1BA-F248-11E8-B48F-1D18A9856A87
  last_name: Nikitenko
  orcid: 0000-0002-0659-3201
citation:
  ama: Edelsbrunner H, Nikitenko A. Poisson–Delaunay Mosaics of Order k. <i>Discrete
    and Computational Geometry</i>. 2019;62(4):865–878. doi:<a href="https://doi.org/10.1007/s00454-018-0049-2">10.1007/s00454-018-0049-2</a>
  apa: Edelsbrunner, H., &#38; Nikitenko, A. (2019). Poisson–Delaunay Mosaics of Order
    k. <i>Discrete and Computational Geometry</i>. Springer. <a href="https://doi.org/10.1007/s00454-018-0049-2">https://doi.org/10.1007/s00454-018-0049-2</a>
  chicago: Edelsbrunner, Herbert, and Anton Nikitenko. “Poisson–Delaunay Mosaics of
    Order K.” <i>Discrete and Computational Geometry</i>. Springer, 2019. <a href="https://doi.org/10.1007/s00454-018-0049-2">https://doi.org/10.1007/s00454-018-0049-2</a>.
  ieee: H. Edelsbrunner and A. Nikitenko, “Poisson–Delaunay Mosaics of Order k,” <i>Discrete
    and Computational Geometry</i>, vol. 62, no. 4. Springer, pp. 865–878, 2019.
  ista: Edelsbrunner H, Nikitenko A. 2019. Poisson–Delaunay Mosaics of Order k. Discrete
    and Computational Geometry. 62(4), 865–878.
  mla: Edelsbrunner, Herbert, and Anton Nikitenko. “Poisson–Delaunay Mosaics of Order
    K.” <i>Discrete and Computational Geometry</i>, vol. 62, no. 4, Springer, 2019,
    pp. 865–878, doi:<a href="https://doi.org/10.1007/s00454-018-0049-2">10.1007/s00454-018-0049-2</a>.
  short: H. Edelsbrunner, A. Nikitenko, Discrete and Computational Geometry 62 (2019)
    865–878.
corr_author: '1'
date_created: 2018-12-16T22:59:20Z
date_published: 2019-12-01T00:00:00Z
date_updated: 2026-07-28T13:38:08Z
day: '01'
ddc:
- '516'
department:
- _id: HeEd
doi: 10.1007/s00454-018-0049-2
ec_funded: 1
external_id:
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  - '1709.09380'
  isi:
  - '000494042900008'
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  file_size: 599339
  relation: main_file
file_date_updated: 2020-07-14T12:47:10Z
fulldoi: https://doi.org/10.1007/s00454-018-0049-2
has_accepted_license: '1'
intvolume: '        62'
isi: 1
issue: '4'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: 865–878
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
publication: Discrete and Computational Geometry
publication_identifier:
  eissn:
  - '14320444'
  issn:
  - '01795376'
publication_status: published
publisher: Springer
quality_controlled: '1'
related_material:
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scopus_import: '1'
status: public
title: Poisson–Delaunay Mosaics of Order k
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 62
year: '2019'
...
---
OA_place: publisher
OA_type: free access
_id: '5947'
abstract:
- lang: eng
  text: Graph algorithms applied in many applications, including social networks,
    communication networks, VLSI design, graphics, and several others, require dynamic
    modifications - addition and removal of vertices and/or edges - in the graph.
    This paper presents a novel concurrent non-blocking algorithm to implement a dynamic
    unbounded directed graph in a shared-memory machine. The addition and removal
    operations of vertices and edges are lock-free. For a finite sized graph, the
    lookup operations are wait-free. Most significant component of the presented algorithm
    is the reachability query in a concurrent graph. The reachability queries in our
    algorithm are obstruction-free and thus impose minimal additional synchronization
    cost over other operations. We prove that each of the data structure operations
    are linearizable. We extensively evaluate a sample C/C++ implementation of the
    algorithm through a number of micro-benchmarks. The experimental results show
    that the proposed algorithm scales well with the number of threads and on an average
    provides 5 to 7x performance improvement over a concurrent graph implementation
    using coarse-grained locking.
article_processing_charge: No
arxiv: 1
author:
- first_name: Bapi
  full_name: Chatterjee, Bapi
  id: 3C41A08A-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-2742-4028
- first_name: Sathya
  full_name: Peri, Sathya
  last_name: Peri
- first_name: Muktikanta
  full_name: Sa, Muktikanta
  last_name: Sa
- first_name: Nandini
  full_name: Singhal, Nandini
  last_name: Singhal
citation:
  ama: 'Chatterjee B, Peri S, Sa M, Singhal N. A simple and practical concurrent non-blocking
    unbounded graph with linearizable reachability queries. In: <i>ACM International
    Conference Proceeding Series</i>. ACM; 2019:168-177. doi:<a href="https://doi.org/10.1145/3288599.3288617">10.1145/3288599.3288617</a>'
  apa: 'Chatterjee, B., Peri, S., Sa, M., &#38; Singhal, N. (2019). A simple and practical
    concurrent non-blocking unbounded graph with linearizable reachability queries.
    In <i>ACM International Conference Proceeding Series</i> (pp. 168–177). Bangalore,
    India: ACM. <a href="https://doi.org/10.1145/3288599.3288617">https://doi.org/10.1145/3288599.3288617</a>'
  chicago: Chatterjee, Bapi, Sathya Peri, Muktikanta Sa, and Nandini Singhal. “A Simple
    and Practical Concurrent Non-Blocking Unbounded Graph with Linearizable Reachability
    Queries.” In <i>ACM International Conference Proceeding Series</i>, 168–77. ACM,
    2019. <a href="https://doi.org/10.1145/3288599.3288617">https://doi.org/10.1145/3288599.3288617</a>.
  ieee: B. Chatterjee, S. Peri, M. Sa, and N. Singhal, “A simple and practical concurrent
    non-blocking unbounded graph with linearizable reachability queries,” in <i>ACM
    International Conference Proceeding Series</i>, Bangalore, India, 2019, pp. 168–177.
  ista: 'Chatterjee B, Peri S, Sa M, Singhal N. 2019. A simple and practical concurrent
    non-blocking unbounded graph with linearizable reachability queries. ACM International
    Conference Proceeding Series. ICDCN: Conference on Distributed Computing and Networking,
    168–177.'
  mla: Chatterjee, Bapi, et al. “A Simple and Practical Concurrent Non-Blocking Unbounded
    Graph with Linearizable Reachability Queries.” <i>ACM International Conference
    Proceeding Series</i>, ACM, 2019, pp. 168–77, doi:<a href="https://doi.org/10.1145/3288599.3288617">10.1145/3288599.3288617</a>.
  short: B. Chatterjee, S. Peri, M. Sa, N. Singhal, in:, ACM International Conference
    Proceeding Series, ACM, 2019, pp. 168–177.
conference:
  end_date: 2019-01-07
  location: Bangalore, India
  name: 'ICDCN: Conference on Distributed Computing and Networking'
  start_date: 2019-01-04
corr_author: '1'
date_created: 2019-02-10T22:59:17Z
date_published: 2019-01-04T00:00:00Z
date_updated: 2026-07-28T13:34:36Z
day: '04'
department:
- _id: DaAl
doi: 10.1145/3288599.3288617
external_id:
  arxiv:
  - '1809.00896'
  isi:
  - '000484491600019'
fulldoi: https://doi.org/10.1145/3288599.3288617
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1145/3288599.3288617
month: '01'
oa: 1
oa_version: Published Version
page: 168-177
publication: ACM International Conference Proceeding Series
publication_identifier:
  isbn:
  - '978-1-4503-6094-4 '
publication_status: published
publisher: ACM
quality_controlled: '1'
scopus_import: '1'
status: public
title: A simple and practical concurrent non-blocking unbounded graph with linearizable
  reachability queries
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2019'
...
---
OA_place: repository
OA_type: green
_id: '5906'
abstract:
- lang: eng
  text: We introduce a simple, exactly solvable strong-randomness renormalization
    group (RG) model for the many-body localization (MBL) transition in one dimension.
    Our approach relies on a family of RG flows parametrized by the asymmetry between
    thermal and localized phases. We identify the physical MBL transition in the limit
    of maximal asymmetry, reflecting the instability of MBL against rare thermal inclusions.
    We find a critical point that is localized with power-law distributed thermal
    inclusions. The typical size of critical inclusions remains finite at the transition,
    while the average size is logarithmically diverging. We propose a two-parameter
    scaling theory for the many-body localization transition that falls into the Kosterlitz-Thouless
    universality class, with the MBL phase corresponding to a stable line of fixed
    points with multifractal behavior.
article_number: '040601'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Anya
  full_name: Goremykina, Anya
  last_name: Goremykina
- first_name: Romain
  full_name: Vasseur, Romain
  last_name: Vasseur
- first_name: Maksym
  full_name: Serbyn, Maksym
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
citation:
  ama: Goremykina A, Vasseur R, Serbyn M. Analytically solvable renormalization group
    for the many-body localization transition. <i>Physical Review Letters</i>. 2019;122(4).
    doi:<a href="https://doi.org/10.1103/physrevlett.122.040601">10.1103/physrevlett.122.040601</a>
  apa: Goremykina, A., Vasseur, R., &#38; Serbyn, M. (2019). Analytically solvable
    renormalization group for the many-body localization transition. <i>Physical Review
    Letters</i>. American Physical Society. <a href="https://doi.org/10.1103/physrevlett.122.040601">https://doi.org/10.1103/physrevlett.122.040601</a>
  chicago: Goremykina, Anya, Romain Vasseur, and Maksym Serbyn. “Analytically Solvable
    Renormalization Group for the Many-Body Localization Transition.” <i>Physical
    Review Letters</i>. American Physical Society, 2019. <a href="https://doi.org/10.1103/physrevlett.122.040601">https://doi.org/10.1103/physrevlett.122.040601</a>.
  ieee: A. Goremykina, R. Vasseur, and M. Serbyn, “Analytically solvable renormalization
    group for the many-body localization transition,” <i>Physical Review Letters</i>,
    vol. 122, no. 4. American Physical Society, 2019.
  ista: Goremykina A, Vasseur R, Serbyn M. 2019. Analytically solvable renormalization
    group for the many-body localization transition. Physical Review Letters. 122(4),
    040601.
  mla: Goremykina, Anya, et al. “Analytically Solvable Renormalization Group for the
    Many-Body Localization Transition.” <i>Physical Review Letters</i>, vol. 122,
    no. 4, 040601, American Physical Society, 2019, doi:<a href="https://doi.org/10.1103/physrevlett.122.040601">10.1103/physrevlett.122.040601</a>.
  short: A. Goremykina, R. Vasseur, M. Serbyn, Physical Review Letters 122 (2019).
date_created: 2019-02-01T08:22:28Z
date_published: 2019-02-01T00:00:00Z
date_updated: 2026-07-28T13:42:52Z
day: '01'
department:
- _id: MaSe
doi: 10.1103/physrevlett.122.040601
external_id:
  arxiv:
  - '1807.04285'
  isi:
  - '000456783700001'
fulldoi: https://doi.org/10.1103/physrevlett.122.040601
intvolume: '       122'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1807.04285
month: '02'
oa: 1
oa_version: Preprint
publication: Physical Review Letters
publication_identifier:
  eissn:
  - 1079-7114
  issn:
  - 0031-9007
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Analytically solvable renormalization group for the many-body localization
  transition
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 122
year: '2019'
...
---
_id: '9790'
article_processing_charge: No
author:
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  full_name: Pokusaeva, Victoria
  id: 3184041C-F248-11E8-B48F-1D18A9856A87
  last_name: Pokusaeva
  orcid: 0000-0001-7660-444X
- first_name: Dinara R.
  full_name: Usmanova, Dinara R.
  last_name: Usmanova
- first_name: Ekaterina V.
  full_name: Putintseva, Ekaterina V.
  last_name: Putintseva
- first_name: Lorena
  full_name: Espinar, Lorena
  last_name: Espinar
- first_name: Karen
  full_name: Sarkisyan, Karen
  id: 39A7BF80-F248-11E8-B48F-1D18A9856A87
  last_name: Sarkisyan
  orcid: 0000-0002-5375-6341
- first_name: Alexander S.
  full_name: Mishin, Alexander S.
  last_name: Mishin
- first_name: Natalya S.
  full_name: Bogatyreva, Natalya S.
  last_name: Bogatyreva
- first_name: Dmitry
  full_name: Ivankov, Dmitry
  id: 49FF1036-F248-11E8-B48F-1D18A9856A87
  last_name: Ivankov
  orcid: 0000-0002-8224-4118
- first_name: Arseniy
  full_name: Akopyan, Arseniy
  id: 430D2C90-F248-11E8-B48F-1D18A9856A87
  last_name: Akopyan
  orcid: 0000-0002-2548-617X
- first_name: Sergey
  full_name: Avvakumov, Sergey
  id: 3827DAC8-F248-11E8-B48F-1D18A9856A87
  last_name: Avvakumov
  orcid: 0000-0002-7840-5062
- first_name: Inna S.
  full_name: Povolotskaya, Inna S.
  last_name: Povolotskaya
- first_name: Guillaume J.
  full_name: Filion, Guillaume J.
  last_name: Filion
- first_name: Lucas B.
  full_name: Carey, Lucas B.
  last_name: Carey
- first_name: Fyodor
  full_name: Kondrashov, Fyodor
  id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
  last_name: Kondrashov
  orcid: 0000-0001-8243-4694
citation:
  ama: Pokusaeva V, Usmanova DR, Putintseva EV, et al. A statistical summary of segment
    libraries and sequencing results. 2019. doi:<a href="https://doi.org/10.1371/journal.pgen.1008079.s011">10.1371/journal.pgen.1008079.s011</a>
  apa: Pokusaeva, V., Usmanova, D. R., Putintseva, E. V., Espinar, L., Sarkisyan,
    K., Mishin, A. S., … Kondrashov, F. (2019). A statistical summary of segment libraries
    and sequencing results. Public Library of Science. <a href="https://doi.org/10.1371/journal.pgen.1008079.s011">https://doi.org/10.1371/journal.pgen.1008079.s011</a>
  chicago: Pokusaeva, Victoria, Dinara R. Usmanova, Ekaterina V. Putintseva, Lorena
    Espinar, Karen Sarkisyan, Alexander S. Mishin, Natalya S. Bogatyreva, et al. “A
    Statistical Summary of Segment Libraries and Sequencing Results.” Public Library
    of Science, 2019. <a href="https://doi.org/10.1371/journal.pgen.1008079.s011">https://doi.org/10.1371/journal.pgen.1008079.s011</a>.
  ieee: V. Pokusaeva <i>et al.</i>, “A statistical summary of segment libraries and
    sequencing results.” Public Library of Science, 2019.
  ista: Pokusaeva V, Usmanova DR, Putintseva EV, Espinar L, Sarkisyan K, Mishin AS,
    Bogatyreva NS, Ivankov D, Akopyan A, Avvakumov S, Povolotskaya IS, Filion GJ,
    Carey LB, Kondrashov F. 2019. A statistical summary of segment libraries and sequencing
    results, Public Library of Science, <a href="https://doi.org/10.1371/journal.pgen.1008079.s011">10.1371/journal.pgen.1008079.s011</a>.
  mla: Pokusaeva, Victoria, et al. <i>A Statistical Summary of Segment Libraries and
    Sequencing Results</i>. Public Library of Science, 2019, doi:<a href="https://doi.org/10.1371/journal.pgen.1008079.s011">10.1371/journal.pgen.1008079.s011</a>.
  short: V. Pokusaeva, D.R. Usmanova, E.V. Putintseva, L. Espinar, K. Sarkisyan, A.S.
    Mishin, N.S. Bogatyreva, D. Ivankov, A. Akopyan, S. Avvakumov, I.S. Povolotskaya,
    G.J. Filion, L.B. Carey, F. Kondrashov, (2019).
date_created: 2021-08-06T08:50:15Z
date_published: 2019-04-10T00:00:00Z
date_updated: 2026-07-28T13:29:02Z
day: '10'
department:
- _id: FyKo
doi: 10.1371/journal.pgen.1008079.s011
fulldoi: https://doi.org/10.1371/journal.pgen.1008079.s011
month: '04'
oa_version: Published Version
publisher: Public Library of Science
related_material:
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  - id: '6419'
    relation: used_in_publication
    status: public
status: public
title: A statistical summary of segment libraries and sequencing results
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9797'
article_processing_charge: No
author:
- first_name: Victoria
  full_name: Pokusaeva, Victoria
  id: 3184041C-F248-11E8-B48F-1D18A9856A87
  last_name: Pokusaeva
  orcid: 0000-0001-7660-444X
- first_name: Dinara R.
  full_name: Usmanova, Dinara R.
  last_name: Usmanova
- first_name: Ekaterina V.
  full_name: Putintseva, Ekaterina V.
  last_name: Putintseva
- first_name: Lorena
  full_name: Espinar, Lorena
  last_name: Espinar
- first_name: Karen
  full_name: Sarkisyan, Karen
  id: 39A7BF80-F248-11E8-B48F-1D18A9856A87
  last_name: Sarkisyan
  orcid: 0000-0002-5375-6341
- first_name: Alexander S.
  full_name: Mishin, Alexander S.
  last_name: Mishin
- first_name: Natalya S.
  full_name: Bogatyreva, Natalya S.
  last_name: Bogatyreva
- first_name: Dmitry
  full_name: Ivankov, Dmitry
  id: 49FF1036-F248-11E8-B48F-1D18A9856A87
  last_name: Ivankov
  orcid: 0000-0002-8224-4118
- first_name: Arseniy
  full_name: Akopyan, Arseniy
  id: 430D2C90-F248-11E8-B48F-1D18A9856A87
  last_name: Akopyan
  orcid: 0000-0002-2548-617X
- first_name: Inna S.
  full_name: Povolotskaya, Inna S.
  last_name: Povolotskaya
- first_name: Guillaume J.
  full_name: Filion, Guillaume J.
  last_name: Filion
- first_name: Lucas B.
  full_name: Carey, Lucas B.
  last_name: Carey
- first_name: Fyodor
  full_name: Kondrashov, Fyodor
  id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
  last_name: Kondrashov
  orcid: 0000-0001-8243-4694
citation:
  ama: Pokusaeva V, Usmanova DR, Putintseva EV, et al. A statistical summary of segment
    libraries and sequencing results. 2019. doi:<a href="https://doi.org/10.1371/journal.pgen.1008079.s011">10.1371/journal.pgen.1008079.s011</a>
  apa: Pokusaeva, V., Usmanova, D. R., Putintseva, E. V., Espinar, L., Sarkisyan,
    K., Mishin, A. S., … Kondrashov, F. (2019). A statistical summary of segment libraries
    and sequencing results. Public Library of Science. <a href="https://doi.org/10.1371/journal.pgen.1008079.s011">https://doi.org/10.1371/journal.pgen.1008079.s011</a>
  chicago: Pokusaeva, Victoria, Dinara R. Usmanova, Ekaterina V. Putintseva, Lorena
    Espinar, Karen Sarkisyan, Alexander S. Mishin, Natalya S. Bogatyreva, et al. “A
    Statistical Summary of Segment Libraries and Sequencing Results.” Public Library
    of Science, 2019. <a href="https://doi.org/10.1371/journal.pgen.1008079.s011">https://doi.org/10.1371/journal.pgen.1008079.s011</a>.
  ieee: V. Pokusaeva <i>et al.</i>, “A statistical summary of segment libraries and
    sequencing results.” Public Library of Science, 2019.
  ista: Pokusaeva V, Usmanova DR, Putintseva EV, Espinar L, Sarkisyan K, Mishin AS,
    Bogatyreva NS, Ivankov D, Akopyan A, Povolotskaya IS, Filion GJ, Carey LB, Kondrashov
    F. 2019. A statistical summary of segment libraries and sequencing results, Public
    Library of Science, <a href="https://doi.org/10.1371/journal.pgen.1008079.s011">10.1371/journal.pgen.1008079.s011</a>.
  mla: Pokusaeva, Victoria, et al. <i>A Statistical Summary of Segment Libraries and
    Sequencing Results</i>. Public Library of Science, 2019, doi:<a href="https://doi.org/10.1371/journal.pgen.1008079.s011">10.1371/journal.pgen.1008079.s011</a>.
  short: V. Pokusaeva, D.R. Usmanova, E.V. Putintseva, L. Espinar, K. Sarkisyan, A.S.
    Mishin, N.S. Bogatyreva, D. Ivankov, A. Akopyan, I.S. Povolotskaya, G.J. Filion,
    L.B. Carey, F. Kondrashov, (2019).
date_created: 2021-08-06T11:08:20Z
date_published: 2019-04-10T00:00:00Z
date_updated: 2026-07-28T13:29:02Z
day: '10'
department:
- _id: FyKo
doi: 10.1371/journal.pgen.1008079.s011
fulldoi: https://doi.org/10.1371/journal.pgen.1008079.s011
month: '04'
oa_version: Published Version
publisher: Public Library of Science
related_material:
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    relation: used_in_publication
    status: public
status: public
title: A statistical summary of segment libraries and sequencing results
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
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author:
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  full_name: Pokusaeva, Victoria
  id: 3184041C-F248-11E8-B48F-1D18A9856A87
  last_name: Pokusaeva
  orcid: 0000-0001-7660-444X
- first_name: Dinara R.
  full_name: Usmanova, Dinara R.
  last_name: Usmanova
- first_name: Ekaterina V.
  full_name: Putintseva, Ekaterina V.
  last_name: Putintseva
- first_name: Lorena
  full_name: Espinar, Lorena
  last_name: Espinar
- first_name: Karen
  full_name: Sarkisyan, Karen
  id: 39A7BF80-F248-11E8-B48F-1D18A9856A87
  last_name: Sarkisyan
  orcid: 0000-0002-5375-6341
- first_name: Alexander S.
  full_name: Mishin, Alexander S.
  last_name: Mishin
- first_name: Natalya S.
  full_name: Bogatyreva, Natalya S.
  last_name: Bogatyreva
- first_name: Dmitry
  full_name: Ivankov, Dmitry
  id: 49FF1036-F248-11E8-B48F-1D18A9856A87
  last_name: Ivankov
  orcid: 0000-0002-8224-4118
- first_name: Arseniy
  full_name: Akopyan, Arseniy
  id: 430D2C90-F248-11E8-B48F-1D18A9856A87
  last_name: Akopyan
  orcid: 0000-0002-2548-617X
- first_name: Sergey
  full_name: Avvakumov, Sergey
  id: 3827DAC8-F248-11E8-B48F-1D18A9856A87
  last_name: Avvakumov
  orcid: 0000-0002-7840-5062
- first_name: Inna S.
  full_name: Povolotskaya, Inna S.
  last_name: Povolotskaya
- first_name: Guillaume J.
  full_name: Filion, Guillaume J.
  last_name: Filion
- first_name: Lucas B.
  full_name: Carey, Lucas B.
  last_name: Carey
- first_name: Fyodor
  full_name: Kondrashov, Fyodor
  id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
  last_name: Kondrashov
  orcid: 0000-0001-8243-4694
citation:
  ama: Pokusaeva V, Usmanova DR, Putintseva EV, et al. Multiple alignment of His3
    orthologues. 2019. doi:<a href="https://doi.org/10.1371/journal.pgen.1008079.s010">10.1371/journal.pgen.1008079.s010</a>
  apa: Pokusaeva, V., Usmanova, D. R., Putintseva, E. V., Espinar, L., Sarkisyan,
    K., Mishin, A. S., … Kondrashov, F. (2019). Multiple alignment of His3 orthologues.
    Public Library of Science. <a href="https://doi.org/10.1371/journal.pgen.1008079.s010">https://doi.org/10.1371/journal.pgen.1008079.s010</a>
  chicago: Pokusaeva, Victoria, Dinara R. Usmanova, Ekaterina V. Putintseva, Lorena
    Espinar, Karen Sarkisyan, Alexander S. Mishin, Natalya S. Bogatyreva, et al. “Multiple
    Alignment of His3 Orthologues.” Public Library of Science, 2019. <a href="https://doi.org/10.1371/journal.pgen.1008079.s010">https://doi.org/10.1371/journal.pgen.1008079.s010</a>.
  ieee: V. Pokusaeva <i>et al.</i>, “Multiple alignment of His3 orthologues.” Public
    Library of Science, 2019.
  ista: Pokusaeva V, Usmanova DR, Putintseva EV, Espinar L, Sarkisyan K, Mishin AS,
    Bogatyreva NS, Ivankov D, Akopyan A, Avvakumov S, Povolotskaya IS, Filion GJ,
    Carey LB, Kondrashov F. 2019. Multiple alignment of His3 orthologues, Public Library
    of Science, <a href="https://doi.org/10.1371/journal.pgen.1008079.s010">10.1371/journal.pgen.1008079.s010</a>.
  mla: Pokusaeva, Victoria, et al. <i>Multiple Alignment of His3 Orthologues</i>.
    Public Library of Science, 2019, doi:<a href="https://doi.org/10.1371/journal.pgen.1008079.s010">10.1371/journal.pgen.1008079.s010</a>.
  short: V. Pokusaeva, D.R. Usmanova, E.V. Putintseva, L. Espinar, K. Sarkisyan, A.S.
    Mishin, N.S. Bogatyreva, D. Ivankov, A. Akopyan, S. Avvakumov, I.S. Povolotskaya,
    G.J. Filion, L.B. Carey, F. Kondrashov, (2019).
date_created: 2021-08-06T08:38:50Z
date_published: 2019-04-10T00:00:00Z
date_updated: 2026-07-28T13:29:01Z
day: '10'
department:
- _id: FyKo
doi: 10.1371/journal.pgen.1008079.s010
fulldoi: https://doi.org/10.1371/journal.pgen.1008079.s010
month: '04'
oa_version: Published Version
publisher: Public Library of Science
related_material:
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  - id: '6419'
    relation: used_in_publication
    status: public
status: public
title: Multiple alignment of His3 orthologues
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
OA_place: publisher
_id: '6179'
abstract:
- lang: eng
  text: "In the first part of this thesis we consider large random matrices with arbitrary
    expectation and a general slowly decaying correlation among its entries. We prove
    universality of the local eigenvalue statistics and optimal local laws for the
    resolvent in the bulk and edge regime. The main novel tool is a systematic diagrammatic
    control of a multivariate cumulant expansion.\r\nIn the second part we consider
    Wigner-type matrices and show that at any cusp singularity of the limiting eigenvalue
    distribution the local eigenvalue statistics are uni- versal and form a Pearcey
    process. Since the density of states typically exhibits only square root or cubic
    root cusp singularities, our work complements previous results on the bulk and
    edge universality and it thus completes the resolution of the Wigner- Dyson-Mehta
    universality conjecture for the last remaining universality type. Our analysis
    holds not only for exact cusps, but approximate cusps as well, where an ex- tended
    Pearcey process emerges. As a main technical ingredient we prove an optimal local
    law at the cusp, and extend the fast relaxation to equilibrium of the Dyson Brow-
    nian motion to the cusp regime.\r\nIn the third and final part we explore the
    entrywise linear statistics of Wigner ma- trices and identify the fluctuations
    for a large class of test functions with little regularity. This enables us to
    study the rectangular Young diagram obtained from the interlacing eigenvalues
    of the random matrix and its minor, and we find that, despite having the same
    limit, the fluctuations differ from those of the algebraic Young tableaux equipped
    with the Plancharel measure."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Dominik J
  full_name: Schröder, Dominik J
  id: 408ED176-F248-11E8-B48F-1D18A9856A87
  last_name: Schröder
  orcid: 0000-0002-2904-1856
citation:
  ama: 'Schröder DJ. From Dyson to Pearcey: Universal statistics in random matrix
    theory. 2019. doi:<a href="https://doi.org/10.15479/AT:ISTA:th6179">10.15479/AT:ISTA:th6179</a>'
  apa: 'Schröder, D. J. (2019). <i>From Dyson to Pearcey: Universal statistics in
    random matrix theory</i>. Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:th6179">https://doi.org/10.15479/AT:ISTA:th6179</a>'
  chicago: 'Schröder, Dominik J. “From Dyson to Pearcey: Universal Statistics in Random
    Matrix Theory.” Institute of Science and Technology Austria, 2019. <a href="https://doi.org/10.15479/AT:ISTA:th6179">https://doi.org/10.15479/AT:ISTA:th6179</a>.'
  ieee: 'D. J. Schröder, “From Dyson to Pearcey: Universal statistics in random matrix
    theory,” Institute of Science and Technology Austria, 2019.'
  ista: 'Schröder DJ. 2019. From Dyson to Pearcey: Universal statistics in random
    matrix theory. Institute of Science and Technology Austria.'
  mla: 'Schröder, Dominik J. <i>From Dyson to Pearcey: Universal Statistics in Random
    Matrix Theory</i>. Institute of Science and Technology Austria, 2019, doi:<a href="https://doi.org/10.15479/AT:ISTA:th6179">10.15479/AT:ISTA:th6179</a>.'
  short: 'D.J. Schröder, From Dyson to Pearcey: Universal Statistics in Random Matrix
    Theory, Institute of Science and Technology Austria, 2019.'
corr_author: '1'
date_created: 2019-03-28T08:58:59Z
date_published: 2019-03-18T00:00:00Z
date_updated: 2026-07-29T13:46:20Z
day: '18'
ddc:
- '515'
- '519'
degree_awarded: PhD
department:
- _id: LaEr
- _id: GradSch
doi: 10.15479/AT:ISTA:th6179
doi_confirm: '1'
ec_funded: 1
file:
- access_level: closed
  checksum: 6926f66f28079a81c4937e3764be00fc
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  file_name: 2019_Schroeder_Thesis.pdf
  file_size: 4228794
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has_accepted_license: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: '375'
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '338804'
  name: Random matrices, universality and disordered quantum systems
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '6184'
    relation: part_of_dissertation
    status: public
  - id: '6186'
    relation: part_of_dissertation
    status: public
  - id: '6185'
    relation: part_of_dissertation
    status: public
  - id: '1012'
    relation: part_of_dissertation
    status: public
  - id: '1144'
    relation: part_of_dissertation
    status: public
  - id: '6182'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
  last_name: Erdös
  orcid: 0000-0001-5366-9603
title: 'From Dyson to Pearcey: Universal statistics in random matrix theory'
type: dissertation
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2019'
...
---
_id: '6182'
abstract:
- lang: eng
  text: "We consider large random matrices with a general slowly decaying correlation
    among its entries. We prove universality of the local eigenvalue statistics and
    optimal local laws for the resolvent away from the spectral edges, generalizing
    the recent result of Ajanki et al. [‘Stability of the matrix Dyson equation and
    random matrices with correlations’, Probab. Theory Related Fields 173(1–2) (2019),
    293–373] to allow slow correlation decay and arbitrary expectation. The main novel
    tool is\r\na systematic diagrammatic control of a multivariate cumulant expansion."
article_number: e8
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
  last_name: Erdös
  orcid: 0000-0001-5366-9603
- first_name: Torben H
  full_name: Krüger, Torben H
  id: 3020C786-F248-11E8-B48F-1D18A9856A87
  last_name: Krüger
  orcid: 0000-0002-4821-3297
- first_name: Dominik J
  full_name: Schröder, Dominik J
  id: 408ED176-F248-11E8-B48F-1D18A9856A87
  last_name: Schröder
  orcid: 0000-0002-2904-1856
citation:
  ama: Erdös L, Krüger TH, Schröder DJ. Random matrices with slow correlation decay.
    <i>Forum of Mathematics, Sigma</i>. 2019;7. doi:<a href="https://doi.org/10.1017/fms.2019.2">10.1017/fms.2019.2</a>
  apa: Erdös, L., Krüger, T. H., &#38; Schröder, D. J. (2019). Random matrices with
    slow correlation decay. <i>Forum of Mathematics, Sigma</i>. Cambridge University
    Press. <a href="https://doi.org/10.1017/fms.2019.2">https://doi.org/10.1017/fms.2019.2</a>
  chicago: Erdös, László, Torben H Krüger, and Dominik J Schröder. “Random Matrices
    with Slow Correlation Decay.” <i>Forum of Mathematics, Sigma</i>. Cambridge University
    Press, 2019. <a href="https://doi.org/10.1017/fms.2019.2">https://doi.org/10.1017/fms.2019.2</a>.
  ieee: L. Erdös, T. H. Krüger, and D. J. Schröder, “Random matrices with slow correlation
    decay,” <i>Forum of Mathematics, Sigma</i>, vol. 7. Cambridge University Press,
    2019.
  ista: Erdös L, Krüger TH, Schröder DJ. 2019. Random matrices with slow correlation
    decay. Forum of Mathematics, Sigma. 7, e8.
  mla: Erdös, László, et al. “Random Matrices with Slow Correlation Decay.” <i>Forum
    of Mathematics, Sigma</i>, vol. 7, e8, Cambridge University Press, 2019, doi:<a
    href="https://doi.org/10.1017/fms.2019.2">10.1017/fms.2019.2</a>.
  short: L. Erdös, T.H. Krüger, D.J. Schröder, Forum of Mathematics, Sigma 7 (2019).
corr_author: '1'
date_created: 2019-03-28T09:05:23Z
date_published: 2019-03-26T00:00:00Z
date_updated: 2026-07-29T13:46:19Z
day: '26'
ddc:
- '510'
department:
- _id: LaEr
doi: 10.1017/fms.2019.2
ec_funded: 1
external_id:
  arxiv:
  - '1705.10661'
  isi:
  - '000488847100001'
file:
- access_level: open_access
  checksum: 933a472568221c73b2c3ce8c87bf6d15
  content_type: application/pdf
  creator: dernst
  date_created: 2019-09-17T14:24:13Z
  date_updated: 2020-07-14T12:47:22Z
  file_id: '6883'
  file_name: 2019_Forum_Erdoes.pdf
  file_size: 1520344
  relation: main_file
file_date_updated: 2020-07-14T12:47:22Z
fulldoi: https://doi.org/10.1017/fms.2019.2
has_accepted_license: '1'
intvolume: '         7'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '338804'
  name: Random matrices, universality and disordered quantum systems
publication: Forum of Mathematics, Sigma
publication_identifier:
  eissn:
  - 2050-5094
publication_status: published
publisher: Cambridge University Press
quality_controlled: '1'
related_material:
  record:
  - id: '6179'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Random matrices with slow correlation decay
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 7
year: '2019'
...
---
_id: '6186'
abstract:
- lang: eng
  text: "We prove that the local eigenvalue statistics of real symmetric Wigner-type\r\nmatrices
    near the cusp points of the eigenvalue density are universal. Together\r\nwith
    the companion paper [arXiv:1809.03971], which proves the same result for\r\nthe
    complex Hermitian symmetry class, this completes the last remaining case of\r\nthe
    Wigner-Dyson-Mehta universality conjecture after bulk and edge\r\nuniversalities
    have been established in the last years. We extend the recent\r\nDyson Brownian
    motion analysis at the edge [arXiv:1712.03881] to the cusp\r\nregime using the
    optimal local law from [arXiv:1809.03971] and the accurate\r\nlocal shape analysis
    of the density from [arXiv:1506.05095, arXiv:1804.07752].\r\nWe also present a
    PDE-based method to improve the estimate on eigenvalue\r\nrigidity via the maximum
    principle of the heat flow related to the Dyson\r\nBrownian motion."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Giorgio
  full_name: Cipolloni, Giorgio
  id: 42198EFA-F248-11E8-B48F-1D18A9856A87
  last_name: Cipolloni
  orcid: 0000-0002-4901-7992
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
  last_name: Erdös
  orcid: 0000-0001-5366-9603
- first_name: Torben H
  full_name: Krüger, Torben H
  id: 3020C786-F248-11E8-B48F-1D18A9856A87
  last_name: Krüger
  orcid: 0000-0002-4821-3297
- first_name: Dominik J
  full_name: Schröder, Dominik J
  id: 408ED176-F248-11E8-B48F-1D18A9856A87
  last_name: Schröder
  orcid: 0000-0002-2904-1856
citation:
  ama: 'Cipolloni G, Erdös L, Krüger TH, Schröder DJ. Cusp universality for random
    matrices, II: The real symmetric case. <i>Pure and Applied Analysis </i>. 2019;1(4):615–707.
    doi:<a href="https://doi.org/10.2140/paa.2019.1.615">10.2140/paa.2019.1.615</a>'
  apa: 'Cipolloni, G., Erdös, L., Krüger, T. H., &#38; Schröder, D. J. (2019). Cusp
    universality for random matrices, II: The real symmetric case. <i>Pure and Applied
    Analysis </i>. MSP. <a href="https://doi.org/10.2140/paa.2019.1.615">https://doi.org/10.2140/paa.2019.1.615</a>'
  chicago: 'Cipolloni, Giorgio, László Erdös, Torben H Krüger, and Dominik J Schröder.
    “Cusp Universality for Random Matrices, II: The Real Symmetric Case.” <i>Pure
    and Applied Analysis </i>. MSP, 2019. <a href="https://doi.org/10.2140/paa.2019.1.615">https://doi.org/10.2140/paa.2019.1.615</a>.'
  ieee: 'G. Cipolloni, L. Erdös, T. H. Krüger, and D. J. Schröder, “Cusp universality
    for random matrices, II: The real symmetric case,” <i>Pure and Applied Analysis
    </i>, vol. 1, no. 4. MSP, pp. 615–707, 2019.'
  ista: 'Cipolloni G, Erdös L, Krüger TH, Schröder DJ. 2019. Cusp universality for
    random matrices, II: The real symmetric case. Pure and Applied Analysis . 1(4),
    615–707.'
  mla: 'Cipolloni, Giorgio, et al. “Cusp Universality for Random Matrices, II: The
    Real Symmetric Case.” <i>Pure and Applied Analysis </i>, vol. 1, no. 4, MSP, 2019,
    pp. 615–707, doi:<a href="https://doi.org/10.2140/paa.2019.1.615">10.2140/paa.2019.1.615</a>.'
  short: G. Cipolloni, L. Erdös, T.H. Krüger, D.J. Schröder, Pure and Applied Analysis  1
    (2019) 615–707.
date_created: 2019-03-28T10:21:17Z
date_published: 2019-10-12T00:00:00Z
date_updated: 2026-07-29T13:46:19Z
day: '12'
department:
- _id: LaEr
doi: 10.2140/paa.2019.1.615
ec_funded: 1
external_id:
  arxiv:
  - '1811.04055'
fulldoi: https://doi.org/10.2140/paa.2019.1.615
intvolume: '         1'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1811.04055
month: '10'
oa: 1
oa_version: Preprint
page: 615–707
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '338804'
  name: Random matrices, universality and disordered quantum systems
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
publication: 'Pure and Applied Analysis '
publication_identifier:
  eissn:
  - 2578-5885
  issn:
  - 2578-5893
publication_status: published
publisher: MSP
quality_controlled: '1'
related_material:
  record:
  - id: '6179'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: 'Cusp universality for random matrices, II: The real symmetric case'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1
year: '2019'
...
---
_id: '7479'
abstract:
- lang: eng
  text: "Multi-exit architectures, in which a stack of processing layers is interleaved
    with early output layers, allow the processing of a test example to stop early
    and thus save computation time and/or energy.  In this work, we propose a new
    training procedure for multi-exit architectures based on the principle of knowledge
    distillation. The method encourage searly exits to mimic later, more accurate
    exits, by matching their output probabilities.\r\nExperiments  on  CIFAR100  and
    \ ImageNet  show  that distillation-based training significantly improves the
    accuracy of early exits while maintaining state-of-the-art accuracy  for  late
    \ ones.   The  method  is  particularly  beneficial when  training  data  is  limited
    \ and  it  allows  a  straightforward extension to semi-supervised learning,i.e.
    making use of unlabeled data at training time. Moreover, it takes only afew lines
    to implement and incurs almost no computational overhead at training time, and
    none at all at test time."
article_processing_charge: No
author:
- first_name: Phuong
  full_name: Bui Thi Mai, Phuong
  id: 3EC6EE64-F248-11E8-B48F-1D18A9856A87
  last_name: Bui Thi Mai
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
citation:
  ama: 'Phuong M, Lampert C. Distillation-based training for multi-exit architectures.
    In: <i>IEEE International Conference on Computer Vision</i>. Vol 2019-October.
    IEEE; 2019:1355-1364. doi:<a href="https://doi.org/10.1109/ICCV.2019.00144">10.1109/ICCV.2019.00144</a>'
  apa: 'Phuong, M., &#38; Lampert, C. (2019). Distillation-based training for multi-exit
    architectures. In <i>IEEE International Conference on Computer Vision</i> (Vol.
    2019–October, pp. 1355–1364). Seoul, Korea: IEEE. <a href="https://doi.org/10.1109/ICCV.2019.00144">https://doi.org/10.1109/ICCV.2019.00144</a>'
  chicago: Phuong, Mary, and Christoph Lampert. “Distillation-Based Training for Multi-Exit
    Architectures.” In <i>IEEE International Conference on Computer Vision</i>, 2019–October:1355–64.
    IEEE, 2019. <a href="https://doi.org/10.1109/ICCV.2019.00144">https://doi.org/10.1109/ICCV.2019.00144</a>.
  ieee: M. Phuong and C. Lampert, “Distillation-based training for multi-exit architectures,”
    in <i>IEEE International Conference on Computer Vision</i>, Seoul, Korea, 2019,
    vol. 2019–October, pp. 1355–1364.
  ista: 'Phuong M, Lampert C. 2019. Distillation-based training for multi-exit architectures.
    IEEE International Conference on Computer Vision. ICCV: International Conference
    on Computer Vision vol. 2019–October, 1355–1364.'
  mla: Phuong, Mary, and Christoph Lampert. “Distillation-Based Training for Multi-Exit
    Architectures.” <i>IEEE International Conference on Computer Vision</i>, vol.
    2019–October, IEEE, 2019, pp. 1355–64, doi:<a href="https://doi.org/10.1109/ICCV.2019.00144">10.1109/ICCV.2019.00144</a>.
  short: M. Phuong, C. Lampert, in:, IEEE International Conference on Computer Vision,
    IEEE, 2019, pp. 1355–1364.
conference:
  end_date: 2019-11-02
  location: Seoul, Korea
  name: 'ICCV: International Conference on Computer Vision'
  start_date: 2019-10-27
date_created: 2020-02-11T09:06:57Z
date_published: 2019-10-01T00:00:00Z
date_updated: 2026-07-30T05:33:51Z
day: '01'
ddc:
- '000'
department:
- _id: ChLa
doi: 10.1109/ICCV.2019.00144
ec_funded: 1
external_id:
  isi:
  - '000531438101047'
file:
- access_level: open_access
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  creator: bphuong
  date_created: 2020-02-11T09:06:39Z
  date_updated: 2020-07-14T12:47:59Z
  file_id: '7480'
  file_name: main.pdf
  file_size: 735768
  relation: main_file
file_date_updated: 2020-07-14T12:47:59Z
fulldoi: https://doi.org/10.1109/ICCV.2019.00144
has_accepted_license: '1'
isi: 1
language:
- iso: eng
month: '10'
oa: 1
oa_version: Submitted Version
page: 1355-1364
project:
- _id: 2532554C-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '308036'
  name: Lifelong Learning of Visual Scene Understanding
publication: IEEE International Conference on Computer Vision
publication_identifier:
  isbn:
  - '9781728148038'
  issn:
  - 1550-5499
publication_status: published
publisher: IEEE
quality_controlled: '1'
related_material:
  record:
  - id: '9418'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Distillation-based training for multi-exit architectures
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2019-October
year: '2019'
...
---
OA_place: repository
OA_type: green
_id: '22454'
abstract:
- lang: eng
  text: Direct quantification of terrestrial biosphere responses to global change
    is crucial for projections of future climate change in Earth system models. Here,
    we synthesized ecosystem carbon-cycling data from 1,119 experiments performed
    over the past four decades concerning changes in temperature, precipitation, CO2
    and nitrogen across major terrestrial vegetation types of the world. Most experiments
    manipulated single rather than multiple global change drivers in temperate ecosystems
    of the USA, Europe and China. The magnitudes of warming and elevated CO2 treatments
    were consistent with the ranges of future projections, whereas those of precipitation
    changes and nitrogen inputs often exceeded the projected ranges. Increases in
    global change drivers consistently accelerated, but decreased precipitation slowed
    down carbon-cycle processes. Nonlinear (including synergistic and antagonistic)
    effects among global change drivers were rare. Belowground carbon allocation responded
    negatively to increased precipitation and nitrogen addition and positively to
    decreased precipitation and elevated CO2. The sensitivities of carbon variables
    to multiple global change drivers depended on the background climate and ecosystem
    condition, suggesting that Earth system models should be evaluated using site-specific
    conditions for best uses of this large dataset. Together, this synthesis underscores
    an urgent need to explore the interactions among multiple global change drivers
    in underrepresented regions such as semi-arid ecosystems, forests in the tropics
    and subtropics, and Arctic tundra when forecasting future terrestrial carbon-climate
    feedback.
article_processing_charge: No
article_type: original
author:
- first_name: Jian
  full_name: Song, Jian
  last_name: Song
- first_name: Shiqiang
  full_name: Wan, Shiqiang
  last_name: Wan
- first_name: Shilong
  full_name: Piao, Shilong
  last_name: Piao
- first_name: Alan K.
  full_name: Knapp, Alan K.
  last_name: Knapp
- first_name: Aimée T.
  full_name: Classen, Aimée T.
  last_name: Classen
- first_name: Sara
  full_name: Vicca, Sara
  last_name: Vicca
- first_name: Philippe
  full_name: Ciais, Philippe
  last_name: Ciais
- first_name: Mark J.
  full_name: Hovenden, Mark J.
  last_name: Hovenden
- first_name: Sebastian
  full_name: Leuzinger, Sebastian
  last_name: Leuzinger
- first_name: Claus
  full_name: Beier, Claus
  last_name: Beier
- first_name: Paul
  full_name: Kardol, Paul
  last_name: Kardol
- first_name: Jianyang
  full_name: Xia, Jianyang
  last_name: Xia
- first_name: Qiang
  full_name: Liu, Qiang
  last_name: Liu
- first_name: Jingyi
  full_name: Ru, Jingyi
  last_name: Ru
- first_name: Zhenxing
  full_name: Zhou, Zhenxing
  last_name: Zhou
- first_name: Yiqi
  full_name: Luo, Yiqi
  last_name: Luo
- first_name: Dali
  full_name: Guo, Dali
  last_name: Guo
- first_name: J.
  full_name: Adam Langley, J.
  last_name: Adam Langley
- first_name: Jakob
  full_name: Zscheischler, Jakob
  last_name: Zscheischler
- first_name: Jeffrey S.
  full_name: Dukes, Jeffrey S.
  last_name: Dukes
- first_name: Jianwu
  full_name: Tang, Jianwu
  last_name: Tang
- first_name: Jiquan
  full_name: Chen, Jiquan
  last_name: Chen
- first_name: Kirsten S.
  full_name: Hofmockel, Kirsten S.
  last_name: Hofmockel
- first_name: Lara M.
  full_name: Kueppers, Lara M.
  last_name: Kueppers
- first_name: Lindsey
  full_name: Rustad, Lindsey
  last_name: Rustad
- first_name: Lingli
  full_name: Liu, Lingli
  last_name: Liu
- first_name: Melinda D.
  full_name: Smith, Melinda D.
  last_name: Smith
- first_name: Pamela H.
  full_name: Templer, Pamela H.
  last_name: Templer
- first_name: R.
  full_name: Quinn Thomas, R.
  last_name: Quinn Thomas
- first_name: Richard J.
  full_name: Norby, Richard J.
  last_name: Norby
- first_name: Richard P.
  full_name: Phillips, Richard P.
  last_name: Phillips
- first_name: Shuli
  full_name: Niu, Shuli
  last_name: Niu
- first_name: Simone
  full_name: Fatichi, Simone
  id: cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6
  last_name: Fatichi
- first_name: Yingping
  full_name: Wang, Yingping
  last_name: Wang
- first_name: Pengshuai
  full_name: Shao, Pengshuai
  last_name: Shao
- first_name: Hongyan
  full_name: Han, Hongyan
  last_name: Han
- first_name: Dandan
  full_name: Wang, Dandan
  last_name: Wang
- first_name: Lingjie
  full_name: Lei, Lingjie
  last_name: Lei
- first_name: Jiali
  full_name: Wang, Jiali
  last_name: Wang
- first_name: Xiaona
  full_name: Li, Xiaona
  last_name: Li
- first_name: Qian
  full_name: Zhang, Qian
  last_name: Zhang
- first_name: Xiaoming
  full_name: Li, Xiaoming
  last_name: Li
- first_name: Fanglong
  full_name: Su, Fanglong
  last_name: Su
- first_name: Bin
  full_name: Liu, Bin
  last_name: Liu
- first_name: Fan
  full_name: Yang, Fan
  last_name: Yang
- first_name: Gaigai
  full_name: Ma, Gaigai
  last_name: Ma
- first_name: Guoyong
  full_name: Li, Guoyong
  last_name: Li
- first_name: Yanchun
  full_name: Liu, Yanchun
  last_name: Liu
- first_name: Yinzhan
  full_name: Liu, Yinzhan
  last_name: Liu
- first_name: Zhongling
  full_name: Yang, Zhongling
  last_name: Yang
- first_name: Kesheng
  full_name: Zhang, Kesheng
  last_name: Zhang
- first_name: Yuan
  full_name: Miao, Yuan
  last_name: Miao
- first_name: Mengjun
  full_name: Hu, Mengjun
  last_name: Hu
- first_name: Chuang
  full_name: Yan, Chuang
  last_name: Yan
- first_name: Ang
  full_name: Zhang, Ang
  last_name: Zhang
- first_name: Mingxing
  full_name: Zhong, Mingxing
  last_name: Zhong
- first_name: Yan
  full_name: Hui, Yan
  last_name: Hui
- first_name: Ying
  full_name: Li, Ying
  last_name: Li
- first_name: Mengmei
  full_name: Zheng, Mengmei
  last_name: Zheng
citation:
  ama: Song J, Wan S, Piao S, et al. A meta-analysis of 1,119 manipulative experiments
    on terrestrial carbon-cycling responses to global change. <i>Nature Ecology &#38;
    Evolution</i>. 2019;3(9):1309-1320. doi:<a href="https://doi.org/10.1038/s41559-019-0958-3">10.1038/s41559-019-0958-3</a>
  apa: Song, J., Wan, S., Piao, S., Knapp, A. K., Classen, A. T., Vicca, S., … Zheng,
    M. (2019). A meta-analysis of 1,119 manipulative experiments on terrestrial carbon-cycling
    responses to global change. <i>Nature Ecology &#38; Evolution</i>. Springer Nature.
    <a href="https://doi.org/10.1038/s41559-019-0958-3">https://doi.org/10.1038/s41559-019-0958-3</a>
  chicago: Song, Jian, Shiqiang Wan, Shilong Piao, Alan K. Knapp, Aimée T. Classen,
    Sara Vicca, Philippe Ciais, et al. “A Meta-Analysis of 1,119 Manipulative Experiments
    on Terrestrial Carbon-Cycling Responses to Global Change.” <i>Nature Ecology &#38;
    Evolution</i>. Springer Nature, 2019. <a href="https://doi.org/10.1038/s41559-019-0958-3">https://doi.org/10.1038/s41559-019-0958-3</a>.
  ieee: J. Song <i>et al.</i>, “A meta-analysis of 1,119 manipulative experiments
    on terrestrial carbon-cycling responses to global change,” <i>Nature Ecology &#38;
    Evolution</i>, vol. 3, no. 9. Springer Nature, pp. 1309–1320, 2019.
  ista: Song J, Wan S, Piao S, Knapp AK, Classen AT, Vicca S, Ciais P, Hovenden MJ,
    Leuzinger S, Beier C, Kardol P, Xia J, Liu Q, Ru J, Zhou Z, Luo Y, Guo D, Adam
    Langley J, Zscheischler J, Dukes JS, Tang J, Chen J, Hofmockel KS, Kueppers LM,
    Rustad L, Liu L, Smith MD, Templer PH, Quinn Thomas R, Norby RJ, Phillips RP,
    Niu S, Fatichi S, Wang Y, Shao P, Han H, Wang D, Lei L, Wang J, Li X, Zhang Q,
    Li X, Su F, Liu B, Yang F, Ma G, Li G, Liu Y, Liu Y, Yang Z, Zhang K, Miao Y,
    Hu M, Yan C, Zhang A, Zhong M, Hui Y, Li Y, Zheng M. 2019. A meta-analysis of
    1,119 manipulative experiments on terrestrial carbon-cycling responses to global
    change. Nature Ecology &#38; Evolution. 3(9), 1309–1320.
  mla: Song, Jian, et al. “A Meta-Analysis of 1,119 Manipulative Experiments on Terrestrial
    Carbon-Cycling Responses to Global Change.” <i>Nature Ecology &#38; Evolution</i>,
    vol. 3, no. 9, Springer Nature, 2019, pp. 1309–20, doi:<a href="https://doi.org/10.1038/s41559-019-0958-3">10.1038/s41559-019-0958-3</a>.
  short: J. Song, S. Wan, S. Piao, A.K. Knapp, A.T. Classen, S. Vicca, P. Ciais, M.J.
    Hovenden, S. Leuzinger, C. Beier, P. Kardol, J. Xia, Q. Liu, J. Ru, Z. Zhou, Y.
    Luo, D. Guo, J. Adam Langley, J. Zscheischler, J.S. Dukes, J. Tang, J. Chen, K.S.
    Hofmockel, L.M. Kueppers, L. Rustad, L. Liu, M.D. Smith, P.H. Templer, R. Quinn
    Thomas, R.J. Norby, R.P. Phillips, S. Niu, S. Fatichi, Y. Wang, P. Shao, H. Han,
    D. Wang, L. Lei, J. Wang, X. Li, Q. Zhang, X. Li, F. Su, B. Liu, F. Yang, G. Ma,
    G. Li, Y. Liu, Y. Liu, Z. Yang, K. Zhang, Y. Miao, M. Hu, C. Yan, A. Zhang, M.
    Zhong, Y. Hui, Y. Li, M. Zheng, Nature Ecology &#38; Evolution 3 (2019) 1309–1320.
das_tickbox: '1'
date_created: 2026-07-27T12:30:23Z
date_published: 2019-09-01T00:00:00Z
date_updated: 2026-07-30T06:31:13Z
day: '01'
doi: 10.1038/s41559-019-0958-3
extern: '1'
fulldoi: https://doi.org/10.1038/s41559-019-0958-3
intvolume: '         3'
issue: '9'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.osti.gov/servlets/purl/1569379
month: '09'
oa: 1
oa_version: Submitted Version
page: 1309-1320
publication: Nature Ecology & Evolution
publication_identifier:
  eissn:
  - 2397-334X
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: A meta-analysis of 1,119 manipulative experiments on terrestrial carbon-cycling
  responses to global change
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 3
year: '2019'
...
