---
_id: '61'
abstract:
- lang: eng
  text: 'We prove that there is no strongly regular graph (SRG) with parameters (460;
    153; 32; 60). The proof is based on a recent lower bound on the number of 4-cliques
    in a SRG and some applications of Euclidean representation of SRGs. '
article_processing_charge: No
arxiv: 1
author:
- first_name: Andriy
  full_name: Bondarenko, Andriy
  last_name: Bondarenko
- first_name: Anton
  full_name: Mellit, Anton
  id: 388D3134-F248-11E8-B48F-1D18A9856A87
  last_name: Mellit
- first_name: Andriy
  full_name: Prymak, Andriy
  last_name: Prymak
- first_name: Danylo
  full_name: Radchenko, Danylo
  last_name: Radchenko
- first_name: Maryna
  full_name: Viazovska, Maryna
  last_name: Viazovska
citation:
  ama: 'Bondarenko A, Mellit A, Prymak A, Radchenko D, Viazovska M. There is no strongly
    regular graph with parameters (460; 153; 32; 60). In: <i>Contemporary Computational
    Mathematics</i>. Springer; 2018:131-134. doi:<a href="https://doi.org/10.1007/978-3-319-72456-0_7">10.1007/978-3-319-72456-0_7</a>'
  apa: Bondarenko, A., Mellit, A., Prymak, A., Radchenko, D., &#38; Viazovska, M.
    (2018). There is no strongly regular graph with parameters (460; 153; 32; 60).
    In <i>Contemporary Computational Mathematics</i> (pp. 131–134). Springer. <a href="https://doi.org/10.1007/978-3-319-72456-0_7">https://doi.org/10.1007/978-3-319-72456-0_7</a>
  chicago: Bondarenko, Andriy, Anton Mellit, Andriy Prymak, Danylo Radchenko, and
    Maryna Viazovska. “There Is No Strongly Regular Graph with Parameters (460; 153;
    32; 60).” In <i>Contemporary Computational Mathematics</i>, 131–34. Springer,
    2018. <a href="https://doi.org/10.1007/978-3-319-72456-0_7">https://doi.org/10.1007/978-3-319-72456-0_7</a>.
  ieee: A. Bondarenko, A. Mellit, A. Prymak, D. Radchenko, and M. Viazovska, “There
    is no strongly regular graph with parameters (460; 153; 32; 60),” in <i>Contemporary
    Computational Mathematics</i>, Springer, 2018, pp. 131–134.
  ista: 'Bondarenko A, Mellit A, Prymak A, Radchenko D, Viazovska M. 2018.There is
    no strongly regular graph with parameters (460; 153; 32; 60). In: Contemporary
    Computational Mathematics. , 131–134.'
  mla: Bondarenko, Andriy, et al. “There Is No Strongly Regular Graph with Parameters
    (460; 153; 32; 60).” <i>Contemporary Computational Mathematics</i>, Springer,
    2018, pp. 131–34, doi:<a href="https://doi.org/10.1007/978-3-319-72456-0_7">10.1007/978-3-319-72456-0_7</a>.
  short: A. Bondarenko, A. Mellit, A. Prymak, D. Radchenko, M. Viazovska, in:, Contemporary
    Computational Mathematics, Springer, 2018, pp. 131–134.
date_created: 2018-12-11T11:44:25Z
date_published: 2018-05-23T00:00:00Z
date_updated: 2021-01-12T08:06:06Z
day: '23'
department:
- _id: TaHa
doi: 10.1007/978-3-319-72456-0_7
extern: '1'
external_id:
  arxiv:
  - '1509.06286'
fulldoi: https://doi.org/10.1007/978-3-319-72456-0_7
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1509.06286
month: '05'
oa: 1
oa_version: Preprint
page: 131 - 134
publication: Contemporary Computational Mathematics
publication_status: published
publisher: Springer
publist_id: '7993'
quality_controlled: '1'
status: public
title: There is no strongly regular graph with parameters (460; 153; 32; 60)
type: book_chapter
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
year: '2018'
...
---
_id: '6109'
abstract:
- lang: eng
  text: Neuropeptides are ubiquitous modulators of behavior and physiology. They are
    packaged in specialized secretory organelles called dense core vesicles (DCVs)
    that are released upon neural stimulation. Unlike synaptic vesicles, which can
    be recycled and refilled close to release sites, DCVs must be replenished by de
    novo synthesis in the cell body. Here, we dissect DCV cell biology in vivo in
    a Caenorhabditis elegans sensory neuron whose tonic activity we can control using
    a natural stimulus. We express fluorescently tagged neuropeptides in the neuron
    and define parameters that describe their subcellular distribution. We measure
    these parameters at high and low neural activity in 187 mutants defective in proteins
    implicated in membrane traffic, neuroendocrine secretion, and neuronal or synaptic
    activity. Using unsupervised hierarchical clustering methods, we analyze these
    data and identify 62 groups of genes with similar mutant phenotypes. We explore
    the function of a subset of these groups. We recapitulate many previous findings,
    validating our paradigm. We uncover a large battery of proteins involved in recycling
    DCV membrane proteins, something hitherto poorly explored. We show that the unfolded
    protein response promotes DCV production, which may contribute to intertissue
    communication of stress. We also find evidence that different mechanisms of priming
    and exocytosis may operate at high and low neural activity. Our work provides
    a defined framework to study DCV biology at different neural activity levels.
author:
- first_name: Patrick
  full_name: Laurent, Patrick
  last_name: Laurent
- first_name: QueeLim
  full_name: Ch’ng, QueeLim
  last_name: Ch’ng
- first_name: Maëlle
  full_name: Jospin, Maëlle
  last_name: Jospin
- first_name: Changchun
  full_name: Chen, Changchun
  last_name: Chen
- first_name: Ramiro
  full_name: Lorenzo, Ramiro
  last_name: Lorenzo
- first_name: Mario
  full_name: de Bono, Mario
  id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
  last_name: de Bono
  orcid: 0000-0001-8347-0443
citation:
  ama: Laurent P, Ch’ng Q, Jospin M, Chen C, Lorenzo R, de Bono M. Genetic dissection
    of neuropeptide cell biology at high and low activity in a defined sensory neuron.
    <i>Proceedings of the National Academy of Sciences</i>. 2018;115(29):E6890-E6899.
    doi:<a href="https://doi.org/10.1073/pnas.1714610115">10.1073/pnas.1714610115</a>
  apa: Laurent, P., Ch’ng, Q., Jospin, M., Chen, C., Lorenzo, R., &#38; de Bono, M.
    (2018). Genetic dissection of neuropeptide cell biology at high and low activity
    in a defined sensory neuron. <i>Proceedings of the National Academy of Sciences</i>.
    National Academy of Sciences. <a href="https://doi.org/10.1073/pnas.1714610115">https://doi.org/10.1073/pnas.1714610115</a>
  chicago: Laurent, Patrick, QueeLim Ch’ng, Maëlle Jospin, Changchun Chen, Ramiro
    Lorenzo, and Mario de Bono. “Genetic Dissection of Neuropeptide Cell Biology at
    High and Low Activity in a Defined Sensory Neuron.” <i>Proceedings of the National
    Academy of Sciences</i>. National Academy of Sciences, 2018. <a href="https://doi.org/10.1073/pnas.1714610115">https://doi.org/10.1073/pnas.1714610115</a>.
  ieee: P. Laurent, Q. Ch’ng, M. Jospin, C. Chen, R. Lorenzo, and M. de Bono, “Genetic
    dissection of neuropeptide cell biology at high and low activity in a defined
    sensory neuron,” <i>Proceedings of the National Academy of Sciences</i>, vol.
    115, no. 29. National Academy of Sciences, pp. E6890–E6899, 2018.
  ista: Laurent P, Ch’ng Q, Jospin M, Chen C, Lorenzo R, de Bono M. 2018. Genetic
    dissection of neuropeptide cell biology at high and low activity in a defined
    sensory neuron. Proceedings of the National Academy of Sciences. 115(29), E6890–E6899.
  mla: Laurent, Patrick, et al. “Genetic Dissection of Neuropeptide Cell Biology at
    High and Low Activity in a Defined Sensory Neuron.” <i>Proceedings of the National
    Academy of Sciences</i>, vol. 115, no. 29, National Academy of Sciences, 2018,
    pp. E6890–99, doi:<a href="https://doi.org/10.1073/pnas.1714610115">10.1073/pnas.1714610115</a>.
  short: P. Laurent, Q. Ch’ng, M. Jospin, C. Chen, R. Lorenzo, M. de Bono, Proceedings
    of the National Academy of Sciences 115 (2018) E6890–E6899.
date_created: 2019-03-19T12:41:33Z
date_published: 2018-07-17T00:00:00Z
date_updated: 2021-01-12T08:06:09Z
day: '17'
ddc:
- '570'
doi: 10.1073/pnas.1714610115
extern: '1'
external_id:
  pmid:
  - '29959203'
file:
- access_level: open_access
  checksum: 5e81665377441cdd8d99ab952c534319
  content_type: application/pdf
  creator: kschuh
  date_created: 2019-03-19T13:01:58Z
  date_updated: 2020-07-14T12:47:19Z
  file_id: '6110'
  file_name: 2018_PNAS_Laurent.pdf
  file_size: 1567765
  relation: main_file
file_date_updated: 2020-07-14T12:47:19Z
fulldoi: https://doi.org/10.1073/pnas.1714610115
has_accepted_license: '1'
intvolume: '       115'
issue: '29'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '07'
oa: 1
oa_version: Published Version
page: E6890-E6899
pmid: 1
publication: Proceedings of the National Academy of Sciences
publication_identifier:
  issn:
  - 0027-8424
  - 1091-6490
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
status: public
title: Genetic dissection of neuropeptide cell biology at high and low activity in
  a defined sensory neuron
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 115
year: '2018'
...
---
_id: '6111'
abstract:
- lang: eng
  text: 'Neurons develop elaborate morphologies that provide a model for understanding
    cellular architecture. By studying C. elegans sensory dendrites, we previously
    identified genes that act to promote the extension of ciliated sensory dendrites
    during embryogenesis. Interestingly, the nonciliated dendrite of the oxygen-sensing
    neuron URX is not affected by these genes, suggesting it develops through a distinct
    mechanism. Here, we use a visual forward genetic screen to identify mutants that
    affect URX dendrite morphogenesis. We find that disruption of the MAP kinase MAPK-15
    or the βH-spectrin SMA-1 causes a phenotype opposite to what we had seen before:
    dendrites extend normally during embryogenesis but begin to overgrow as the animals
    reach adulthood, ultimately extending up to 150% of their normal length. SMA-1
    is broadly expressed and acts non-cell-autonomously, while MAPK-15 is expressed
    in many sensory neurons including URX and acts cell-autonomously. MAPK-15 acts
    at the time of overgrowth, localizes at the dendrite ending, and requires its
    kinase activity, suggesting it acts locally in time and space to constrain dendrite
    growth. Finally, we find that the oxygen-sensing guanylate cyclase GCY-35, which
    normally localizes at the dendrite ending, is localized throughout the overgrown
    region, and that overgrowth can be suppressed by overexpressing GCY-35 or by genetically
    mimicking elevated cGMP signaling. These results suggest that overgrowth may correspond
    to expansion of a sensory compartment at the dendrite ending, reminiscent of the
    remodeling of sensory cilia or dendritic spines. Thus, in contrast to established
    pathways that promote dendrite growth during early development, our results reveal
    a distinct mechanism that constrains dendrite growth throughout the life of the
    animal, possibly by controlling the size of a sensory compartment at the dendrite
    ending.'
article_number: e1007435
author:
- first_name: Ian G.
  full_name: McLachlan, Ian G.
  last_name: McLachlan
- first_name: Isabel
  full_name: Beets, Isabel
  last_name: Beets
- first_name: Mario
  full_name: de Bono, Mario
  id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
  last_name: de Bono
  orcid: 0000-0001-8347-0443
- first_name: Maxwell G.
  full_name: Heiman, Maxwell G.
  last_name: Heiman
citation:
  ama: McLachlan IG, Beets I, de Bono M, Heiman MG. A neuronal MAP kinase constrains
    growth of a Caenorhabditis elegans sensory dendrite throughout the life of the
    organism. <i>PLOS Genetics</i>. 2018;14(6). doi:<a href="https://doi.org/10.1371/journal.pgen.1007435">10.1371/journal.pgen.1007435</a>
  apa: McLachlan, I. G., Beets, I., de Bono, M., &#38; Heiman, M. G. (2018). A neuronal
    MAP kinase constrains growth of a Caenorhabditis elegans sensory dendrite throughout
    the life of the organism. <i>PLOS Genetics</i>. Public Library of Science. <a
    href="https://doi.org/10.1371/journal.pgen.1007435">https://doi.org/10.1371/journal.pgen.1007435</a>
  chicago: McLachlan, Ian G., Isabel Beets, Mario de Bono, and Maxwell G. Heiman.
    “A Neuronal MAP Kinase Constrains Growth of a Caenorhabditis Elegans Sensory Dendrite
    throughout the Life of the Organism.” <i>PLOS Genetics</i>. Public Library of
    Science, 2018. <a href="https://doi.org/10.1371/journal.pgen.1007435">https://doi.org/10.1371/journal.pgen.1007435</a>.
  ieee: I. G. McLachlan, I. Beets, M. de Bono, and M. G. Heiman, “A neuronal MAP kinase
    constrains growth of a Caenorhabditis elegans sensory dendrite throughout the
    life of the organism,” <i>PLOS Genetics</i>, vol. 14, no. 6. Public Library of
    Science, 2018.
  ista: McLachlan IG, Beets I, de Bono M, Heiman MG. 2018. A neuronal MAP kinase constrains
    growth of a Caenorhabditis elegans sensory dendrite throughout the life of the
    organism. PLOS Genetics. 14(6), e1007435.
  mla: McLachlan, Ian G., et al. “A Neuronal MAP Kinase Constrains Growth of a Caenorhabditis
    Elegans Sensory Dendrite throughout the Life of the Organism.” <i>PLOS Genetics</i>,
    vol. 14, no. 6, e1007435, Public Library of Science, 2018, doi:<a href="https://doi.org/10.1371/journal.pgen.1007435">10.1371/journal.pgen.1007435</a>.
  short: I.G. McLachlan, I. Beets, M. de Bono, M.G. Heiman, PLOS Genetics 14 (2018).
date_created: 2019-03-19T13:09:28Z
date_published: 2018-06-07T00:00:00Z
date_updated: 2021-01-12T08:06:11Z
day: '07'
ddc:
- '570'
doi: 10.1371/journal.pgen.1007435
extern: '1'
external_id:
  pmid:
  - '29879119'
file:
- access_level: open_access
  checksum: 622036b945365dbc575bea2768aa9bc8
  content_type: application/pdf
  creator: kschuh
  date_created: 2019-03-19T13:18:01Z
  date_updated: 2020-07-14T12:47:19Z
  file_id: '6112'
  file_name: 2018_PLOS_McLachlan.pdf
  file_size: 13011506
  relation: main_file
file_date_updated: 2020-07-14T12:47:19Z
fulldoi: https://doi.org/10.1371/journal.pgen.1007435
has_accepted_license: '1'
intvolume: '        14'
issue: '6'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '06'
oa: 1
oa_version: Published Version
pmid: 1
publication: PLOS Genetics
publication_identifier:
  issn:
  - 1553-7404
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
status: public
title: A neuronal MAP kinase constrains growth of a Caenorhabditis elegans sensory
  dendrite throughout the life of the organism
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2018'
...
---
_id: '616'
abstract:
- lang: eng
  text: Social insects protect their colonies from infectious disease through collective
    defences that result in social immunity. In ants, workers first try to prevent
    infection of colony members. Here, we show that if this fails and a pathogen establishes
    an infection, ants employ an efficient multicomponent behaviour − &quot;destructive
    disinfection&quot; − to prevent further spread of disease through the colony.
    Ants specifically target infected pupae during the pathogen's non-contagious incubation
    period, relying on chemical 'sickness cues' emitted by pupae. They then remove
    the pupal cocoon, perforate its cuticle and administer antimicrobial poison, which
    enters the body and prevents pathogen replication from the inside out. Like the
    immune system of a body that specifically targets and eliminates infected cells,
    this social immunity measure sacrifices infected brood to stop the pathogen completing
    its lifecycle, thus protecting the rest of the colony. Hence, the same principles
    of disease defence apply at different levels of biological organisation.
article_number: e32073
article_processing_charge: Yes
author:
- first_name: Christopher
  full_name: Pull, Christopher
  id: 3C7F4840-F248-11E8-B48F-1D18A9856A87
  last_name: Pull
  orcid: 0000-0003-1122-3982
- first_name: Line V
  full_name: Ugelvig, Line V
  id: 3DC97C8E-F248-11E8-B48F-1D18A9856A87
  last_name: Ugelvig
  orcid: 0000-0003-1832-8883
- first_name: Florian
  full_name: Wiesenhofer, Florian
  id: 39523C54-F248-11E8-B48F-1D18A9856A87
  last_name: Wiesenhofer
- first_name: Anna V
  full_name: Grasse, Anna V
  id: 406F989C-F248-11E8-B48F-1D18A9856A87
  last_name: Grasse
- first_name: Simon
  full_name: Tragust, Simon
  id: 35A7A418-F248-11E8-B48F-1D18A9856A87
  last_name: Tragust
- first_name: Thomas
  full_name: Schmitt, Thomas
  last_name: Schmitt
- first_name: Mark
  full_name: Brown, Mark
  last_name: Brown
- first_name: Sylvia
  full_name: Cremer, Sylvia
  id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
  last_name: Cremer
  orcid: 0000-0002-2193-3868
citation:
  ama: Pull C, Ugelvig LV, Wiesenhofer F, et al. Destructive disinfection of infected
    brood prevents systemic disease spread in ant colonies. <i>eLife</i>. 2018;7.
    doi:<a href="https://doi.org/10.7554/eLife.32073">10.7554/eLife.32073</a>
  apa: Pull, C., Ugelvig, L. V., Wiesenhofer, F., Grasse, A. V., Tragust, S., Schmitt,
    T., … Cremer, S. (2018). Destructive disinfection of infected brood prevents systemic
    disease spread in ant colonies. <i>ELife</i>. eLife Sciences Publications. <a
    href="https://doi.org/10.7554/eLife.32073">https://doi.org/10.7554/eLife.32073</a>
  chicago: Pull, Christopher, Line V Ugelvig, Florian Wiesenhofer, Anna V Grasse,
    Simon Tragust, Thomas Schmitt, Mark Brown, and Sylvia Cremer. “Destructive Disinfection
    of Infected Brood Prevents Systemic Disease Spread in Ant Colonies.” <i>ELife</i>.
    eLife Sciences Publications, 2018. <a href="https://doi.org/10.7554/eLife.32073">https://doi.org/10.7554/eLife.32073</a>.
  ieee: C. Pull <i>et al.</i>, “Destructive disinfection of infected brood prevents
    systemic disease spread in ant colonies,” <i>eLife</i>, vol. 7. eLife Sciences
    Publications, 2018.
  ista: Pull C, Ugelvig LV, Wiesenhofer F, Grasse AV, Tragust S, Schmitt T, Brown
    M, Cremer S. 2018. Destructive disinfection of infected brood prevents systemic
    disease spread in ant colonies. eLife. 7, e32073.
  mla: Pull, Christopher, et al. “Destructive Disinfection of Infected Brood Prevents
    Systemic Disease Spread in Ant Colonies.” <i>ELife</i>, vol. 7, e32073, eLife
    Sciences Publications, 2018, doi:<a href="https://doi.org/10.7554/eLife.32073">10.7554/eLife.32073</a>.
  short: C. Pull, L.V. Ugelvig, F. Wiesenhofer, A.V. Grasse, S. Tragust, T. Schmitt,
    M. Brown, S. Cremer, ELife 7 (2018).
corr_author: '1'
date_created: 2018-12-11T11:47:31Z
date_published: 2018-01-09T00:00:00Z
date_updated: 2026-04-08T14:19:10Z
day: '09'
ddc:
- '570'
- '590'
department:
- _id: SyCr
doi: 10.7554/eLife.32073
ec_funded: 1
external_id:
  isi:
  - '000419601300001'
file:
- access_level: open_access
  checksum: 540f941e8d3530a9441e4affd94f07d7
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:10:43Z
  date_updated: 2020-07-14T12:47:20Z
  file_id: '4832'
  file_name: IST-2018-978-v1+1_elife-32073-v1.pdf
  file_size: 1435585
  relation: main_file
file_date_updated: 2020-07-14T12:47:20Z
fulldoi: https://doi.org/10.7554/eLife.32073
has_accepted_license: '1'
intvolume: '         7'
isi: 1
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 25DC711C-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '243071'
  name: 'Social Vaccination in Ant Colonies: from Individual Mechanisms to Society
    Effects'
- _id: 25DDF0F0-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '302004'
  name: 'Collective disease defence and pathogen detection abilities in ant societies:
    a chemo-neuro-immunological approach'
publication: eLife
publication_status: published
publisher: eLife Sciences Publications
publist_id: '7188'
pubrep_id: '978'
quality_controlled: '1'
related_material:
  record:
  - id: '819'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Destructive disinfection of infected brood prevents systemic disease spread
  in ant colonies
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 7
year: '2018'
...
---
_id: '6164'
abstract:
- lang: eng
  text: In this paper, we propose an algorithm to build discrete spherical shell having
    integer center and real-valued inner and outer radii on the face-centered cubic
    (FCC) grid. We address the problem by mapping it to a 2D scenario and building
    the shell layer by layer on hexagonal grids with additive manufacturing in mind.
    The layered hexagonal grids get shifted according to need as we move from one
    layer to another and forms the FCC grid in 3D. However, we restrict our computation
    strictly to 2D in order to utilize symmetry and simplicity.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Girish
  full_name: Koshti, Girish
  last_name: Koshti
- first_name: Ranita
  full_name: Biswas, Ranita
  id: 3C2B033E-F248-11E8-B48F-1D18A9856A87
  last_name: Biswas
  orcid: 0000-0002-5372-7890
- first_name: Gaëlle
  full_name: Largeteau-Skapin, Gaëlle
  last_name: Largeteau-Skapin
- first_name: Rita
  full_name: Zrour, Rita
  last_name: Zrour
- first_name: Eric
  full_name: Andres, Eric
  last_name: Andres
- first_name: Partha
  full_name: Bhowmick, Partha
  last_name: Bhowmick
citation:
  ama: 'Koshti G, Biswas R, Largeteau-Skapin G, Zrour R, Andres E, Bhowmick P. Sphere
    construction on the FCC grid interpreted as layered hexagonal grids in 3D. In:
    <i>19th International Workshop</i>. Vol 11255. Cham: Springer; 2018:82-96. doi:<a
    href="https://doi.org/10.1007/978-3-030-05288-1_7">10.1007/978-3-030-05288-1_7</a>'
  apa: 'Koshti, G., Biswas, R., Largeteau-Skapin, G., Zrour, R., Andres, E., &#38;
    Bhowmick, P. (2018). Sphere construction on the FCC grid interpreted as layered
    hexagonal grids in 3D. In <i>19th International Workshop</i> (Vol. 11255, pp.
    82–96). Cham: Springer. <a href="https://doi.org/10.1007/978-3-030-05288-1_7">https://doi.org/10.1007/978-3-030-05288-1_7</a>'
  chicago: 'Koshti, Girish, Ranita Biswas, Gaëlle Largeteau-Skapin, Rita Zrour, Eric
    Andres, and Partha Bhowmick. “Sphere Construction on the FCC Grid Interpreted
    as Layered Hexagonal Grids in 3D.” In <i>19th International Workshop</i>, 11255:82–96.
    Cham: Springer, 2018. <a href="https://doi.org/10.1007/978-3-030-05288-1_7">https://doi.org/10.1007/978-3-030-05288-1_7</a>.'
  ieee: G. Koshti, R. Biswas, G. Largeteau-Skapin, R. Zrour, E. Andres, and P. Bhowmick,
    “Sphere construction on the FCC grid interpreted as layered hexagonal grids in
    3D,” in <i>19th International Workshop</i>, Porto, Portugal, 2018, vol. 11255,
    pp. 82–96.
  ista: 'Koshti G, Biswas R, Largeteau-Skapin G, Zrour R, Andres E, Bhowmick P. 2018.
    Sphere construction on the FCC grid interpreted as layered hexagonal grids in
    3D. 19th International Workshop. IWCIA: International Workshop on Combinatorial
    Image Analysis, LNCS, vol. 11255, 82–96.'
  mla: Koshti, Girish, et al. “Sphere Construction on the FCC Grid Interpreted as
    Layered Hexagonal Grids in 3D.” <i>19th International Workshop</i>, vol. 11255,
    Springer, 2018, pp. 82–96, doi:<a href="https://doi.org/10.1007/978-3-030-05288-1_7">10.1007/978-3-030-05288-1_7</a>.
  short: G. Koshti, R. Biswas, G. Largeteau-Skapin, R. Zrour, E. Andres, P. Bhowmick,
    in:, 19th International Workshop, Springer, Cham, 2018, pp. 82–96.
conference:
  end_date: 2018-11-24
  location: Porto, Portugal
  name: 'IWCIA: International Workshop on Combinatorial Image Analysis'
  start_date: 2018-11-22
date_created: 2019-03-21T12:16:58Z
date_published: 2018-11-22T00:00:00Z
date_updated: 2022-01-27T15:26:39Z
day: '22'
doi: 10.1007/978-3-030-05288-1_7
extern: '1'
fulldoi: https://doi.org/10.1007/978-3-030-05288-1_7
intvolume: '     11255'
language:
- iso: eng
month: '11'
oa_version: None
page: 82-96
place: Cham
publication: 19th International Workshop
publication_identifier:
  eisbn:
  - 978-3-030-05288-1
  eissn:
  - 1611-3349
  isbn:
  - 978-3-030-05287-4
  issn:
  - 0302-9743
publication_status: published
publisher: Springer
quality_controlled: '1'
status: public
title: Sphere construction on the FCC grid interpreted as layered hexagonal grids
  in 3D
type: conference
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 11255
year: '2018'
...
---
_id: '617'
abstract:
- lang: eng
  text: Insects are exposed to a variety of potential pathogens in their environment,
    many of which can severely impact fitness and health. Consequently, hosts have
    evolved resistance and tolerance strategies to suppress or cope with infections.
    Hosts utilizing resistance improve fitness by clearing or reducing pathogen loads,
    and hosts utilizing tolerance reduce harmful fitness effects per pathogen load.
    To understand variation in, and selective pressures on, resistance and tolerance,
    we asked to what degree they are shaped by host genetic background, whether plasticity
    in these responses depends upon dietary environment, and whether there are interactions
    between these two factors. Females from ten wild-type Drosophila melanogaster
    genotypes were kept on high- or low-protein (yeast) diets and infected with one
    of two opportunistic bacterial pathogens, Lactococcus lactis or Pseudomonas entomophila.
    We measured host resistance as the inverse of bacterial load in the early infection
    phase. The relationship (slope) between fly fecundity and individual-level bacteria
    load provided our fecundity tolerance measure. Genotype and dietary yeast determined
    host fecundity and strongly affected survival after infection with pathogenic
    P. entomophila. There was considerable genetic variation in host resistance, a
    commonly found phenomenon resulting from for example varying resistance costs
    or frequency-dependent selection. Despite this variation and the reproductive
    cost of higher P. entomophila loads, fecundity tolerance did not vary across genotypes.
    The absence of genetic variation in tolerance may suggest that at this early infection
    stage, fecundity tolerance is fixed or that any evolved tolerance mechanisms are
    not expressed under these infection conditions.
acknowledgement: 'We would like to thank Susann Wicke for performing the genome-wide
  SNP/indel analyses, as well as Veronica Alves, Kevin Ferro, Momir Futo, Barbara
  Hasert, Dafne Maximo, Nora Schulz, Marlene Sroka, and Barth Wieczorek for technical
  help. We thank Brian Lazzaro for the L. lactis strain and Bruno Lemaitre for the
  Pseudomonas entomophila strain. We would like to thank two anonymous reviewers for
  their helpful comments. We are grateful to the Deutsche Forschungsgemeinschaft (DFG)
  priority programme 1399 ‘Host parasite coevolution’ for funding this project (AR
  872/1-1). '
article_processing_charge: No
article_type: original
author:
- first_name: Megan
  full_name: Kutzer, Megan
  id: 29D0B332-F248-11E8-B48F-1D18A9856A87
  last_name: Kutzer
  orcid: 0000-0002-8696-6978
- first_name: Joachim
  full_name: Kurtz, Joachim
  last_name: Kurtz
- first_name: Sophie
  full_name: Armitage, Sophie
  last_name: Armitage
citation:
  ama: Kutzer M, Kurtz J, Armitage S. Genotype and diet affect resistance, survival,
    and fecundity but not fecundity tolerance. <i>Journal of Evolutionary Biology</i>.
    2018;31(1):159-171. doi:<a href="https://doi.org/10.1111/jeb.13211">10.1111/jeb.13211</a>
  apa: Kutzer, M., Kurtz, J., &#38; Armitage, S. (2018). Genotype and diet affect
    resistance, survival, and fecundity but not fecundity tolerance. <i>Journal of
    Evolutionary Biology</i>. Wiley. <a href="https://doi.org/10.1111/jeb.13211">https://doi.org/10.1111/jeb.13211</a>
  chicago: Kutzer, Megan, Joachim Kurtz, and Sophie Armitage. “Genotype and Diet Affect
    Resistance, Survival, and Fecundity but Not Fecundity Tolerance.” <i>Journal of
    Evolutionary Biology</i>. Wiley, 2018. <a href="https://doi.org/10.1111/jeb.13211">https://doi.org/10.1111/jeb.13211</a>.
  ieee: M. Kutzer, J. Kurtz, and S. Armitage, “Genotype and diet affect resistance,
    survival, and fecundity but not fecundity tolerance,” <i>Journal of Evolutionary
    Biology</i>, vol. 31, no. 1. Wiley, pp. 159–171, 2018.
  ista: Kutzer M, Kurtz J, Armitage S. 2018. Genotype and diet affect resistance,
    survival, and fecundity but not fecundity tolerance. Journal of Evolutionary Biology.
    31(1), 159–171.
  mla: Kutzer, Megan, et al. “Genotype and Diet Affect Resistance, Survival, and Fecundity
    but Not Fecundity Tolerance.” <i>Journal of Evolutionary Biology</i>, vol. 31,
    no. 1, Wiley, 2018, pp. 159–71, doi:<a href="https://doi.org/10.1111/jeb.13211">10.1111/jeb.13211</a>.
  short: M. Kutzer, J. Kurtz, S. Armitage, Journal of Evolutionary Biology 31 (2018)
    159–171.
date_created: 2018-12-11T11:47:31Z
date_published: 2018-01-01T00:00:00Z
date_updated: 2026-06-18T19:00:18Z
day: '01'
ddc:
- '570'
department:
- _id: SyCr
doi: 10.1111/jeb.13211
external_id:
  isi:
  - '000419307000014'
  pmid:
  - '29150962'
fulldoi: https://doi.org/10.1111/jeb.13211
intvolume: '        31'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1111/jeb.13211
month: '01'
oa: 1
oa_version: Published Version
page: 159  - 171
pmid: 1
publication: Journal of Evolutionary Biology
publication_identifier:
  eissn:
  - 1420-9101
  issn:
  - 1010-061X
publication_status: published
publisher: Wiley
publist_id: '7187'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Genotype and diet affect resistance, survival, and fecundity but not fecundity
  tolerance
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 31
year: '2018'
...
---
_id: '6183'
abstract:
- lang: eng
  text: "We study the unique solution $m$ of the Dyson equation \\[ -m(z)^{-1} = z
    - a\r\n+ S[m(z)] \\] on a von Neumann algebra $\\mathcal{A}$ with the constraint\r\n$\\mathrm{Im}\\,m\\geq
    0$. Here, $z$ lies in the complex upper half-plane, $a$ is\r\na self-adjoint element
    of $\\mathcal{A}$ and $S$ is a positivity-preserving\r\nlinear operator on $\\mathcal{A}$.
    We show that $m$ is the Stieltjes transform\r\nof a compactly supported $\\mathcal{A}$-valued
    measure on $\\mathbb{R}$. Under\r\nsuitable assumptions, we establish that this
    measure has a uniformly\r\n$1/3$-H\\\"{o}lder continuous density with respect
    to the Lebesgue measure, which\r\nis supported on finitely many intervals, called
    bands. In fact, the density is\r\nanalytic inside the bands with a square-root
    growth at the edges and internal\r\ncubic root cusps whenever the gap between
    two bands vanishes. The shape of\r\nthese singularities is universal and no other
    singularity may occur. We give a\r\nprecise asymptotic description of $m$ near
    the singular points. These\r\nasymptotics generalize the analysis at the regular
    edges given in the companion\r\npaper on the Tracy-Widom universality for the
    edge eigenvalue statistics for\r\ncorrelated random matrices [arXiv:1804.07744]
    and they play a key role in the\r\nproof of the Pearcey universality at the cusp
    for Wigner-type matrices\r\n[arXiv:1809.03971,arXiv:1811.04055]. We also extend
    the finite dimensional band\r\nmass formula from [arXiv:1804.07744] to the von
    Neumann algebra setting by\r\nshowing that the spectral mass of the bands is topologically
    rigid under\r\ndeformations and we conclude that these masses are quantized in
    some important\r\ncases."
acknowledgement: "Partially funded by ERC Advanced Grant RANMAT No. 338804.\r\nPartially
  supported by the Hausdorff Center for Mathematics.\r\n"
article_number: '1804.07752'
article_processing_charge: No
arxiv: 1
author:
- first_name: Johannes
  full_name: Alt, Johannes
  id: 36D3D8B6-F248-11E8-B48F-1D18A9856A87
  last_name: Alt
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
  last_name: Erdös
  orcid: 0000-0001-5366-9603
- first_name: Torben H
  full_name: Krüger, Torben H
  id: 3020C786-F248-11E8-B48F-1D18A9856A87
  last_name: Krüger
  orcid: 0000-0002-4821-3297
citation:
  ama: 'Alt J, Erdös L, Krüger TH. The Dyson equation with linear self-energy: Spectral
    bands, edges and  cusps. <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/arXiv.1804.07752">10.48550/arXiv.1804.07752</a>'
  apa: 'Alt, J., Erdös, L., &#38; Krüger, T. H. (n.d.). The Dyson equation with linear
    self-energy: Spectral bands, edges and  cusps. <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.1804.07752">https://doi.org/10.48550/arXiv.1804.07752</a>'
  chicago: 'Alt, Johannes, László Erdös, and Torben H Krüger. “The Dyson Equation
    with Linear Self-Energy: Spectral Bands, Edges and  Cusps.” <i>ArXiv</i>, n.d.
    <a href="https://doi.org/10.48550/arXiv.1804.07752">https://doi.org/10.48550/arXiv.1804.07752</a>.'
  ieee: 'J. Alt, L. Erdös, and T. H. Krüger, “The Dyson equation with linear self-energy:
    Spectral bands, edges and  cusps,” <i>arXiv</i>. .'
  ista: 'Alt J, Erdös L, Krüger TH. The Dyson equation with linear self-energy: Spectral
    bands, edges and  cusps. arXiv, 1804.07752.'
  mla: 'Alt, Johannes, et al. “The Dyson Equation with Linear Self-Energy: Spectral
    Bands, Edges and  Cusps.” <i>ArXiv</i>, 1804.07752, doi:<a href="https://doi.org/10.48550/arXiv.1804.07752">10.48550/arXiv.1804.07752</a>.'
  short: J. Alt, L. Erdös, T.H. Krüger, ArXiv (n.d.).
date_created: 2019-03-28T09:20:06Z
date_published: 2018-04-20T00:00:00Z
date_updated: 2026-04-08T14:11:36Z
day: '20'
department:
- _id: LaEr
doi: 10.48550/arXiv.1804.07752
ec_funded: 1
external_id:
  arxiv:
  - '1804.07752'
fulldoi: https://doi.org/10.48550/arXiv.1804.07752
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1804.07752
month: '04'
oa: 1
oa_version: Preprint
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '338804'
  name: Random matrices, universality and disordered quantum systems
publication: arXiv
publication_status: draft
related_material:
  record:
  - id: '14694'
    relation: later_version
    status: public
  - id: '149'
    relation: dissertation_contains
    status: public
status: public
title: 'The Dyson equation with linear self-energy: Spectral bands, edges and  cusps'
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2018'
...
---
_id: '6195'
abstract:
- lang: eng
  text: In the context of robotic manipulation and grasping, the shift from a view
    that is static (force closure of a single posture) and contact-deprived (only
    contact for force closure is allowed, everything else is obstacle) towards a view
    that is dynamic and contact-rich (soft manipulation) has led to an increased interest
    in soft hands. These hands can easily exploit environmental constraints and object
    surfaces without risk, and safely interact with humans, but present also some
    challenges. Designing them is difficult, as well as predicting, modelling, and
    “programming” their interactions with the objects and the environment. This paper
    tackles the problem of simulating them in a fast and effective way, leveraging
    on novel and existing simulation technologies. We present a triple-layered simulation
    framework where dynamic properties such as stiffness are determined from slow
    but accurate FEM simulation data once, and then condensed into a lumped parameter
    model that can be used to fast simulate soft fingers and soft hands. We apply
    our approach to the simulation of soft pneumatic fingers.
article_number: '8461106'
article_processing_charge: No
author:
- first_name: Maria
  full_name: Pozzi, Maria
  last_name: Pozzi
- first_name: Eder
  full_name: Miguel Villalba, Eder
  id: 3FB91342-F248-11E8-B48F-1D18A9856A87
  last_name: Miguel Villalba
  orcid: 0000-0001-5665-0430
- first_name: Raphael
  full_name: Deimel, Raphael
  last_name: Deimel
- first_name: Monica
  full_name: Malvezzi, Monica
  last_name: Malvezzi
- first_name: Bernd
  full_name: Bickel, Bernd
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
- first_name: Oliver
  full_name: Brock, Oliver
  last_name: Brock
- first_name: Domenico
  full_name: Prattichizzo, Domenico
  last_name: Prattichizzo
citation:
  ama: 'Pozzi M, Miguel Villalba E, Deimel R, et al. Efficient FEM-based simulation
    of soft robots modeled as kinematic chains. In: IEEE; 2018. doi:<a href="https://doi.org/10.1109/icra.2018.8461106">10.1109/icra.2018.8461106</a>'
  apa: 'Pozzi, M., Miguel Villalba, E., Deimel, R., Malvezzi, M., Bickel, B., Brock,
    O., &#38; Prattichizzo, D. (2018). Efficient FEM-based simulation of soft robots
    modeled as kinematic chains. Presented at the ICRA: International Conference on
    Robotics and Automation, Brisbane, Australia: IEEE. <a href="https://doi.org/10.1109/icra.2018.8461106">https://doi.org/10.1109/icra.2018.8461106</a>'
  chicago: Pozzi, Maria, Eder Miguel Villalba, Raphael Deimel, Monica Malvezzi, Bernd
    Bickel, Oliver Brock, and Domenico Prattichizzo. “Efficient FEM-Based Simulation
    of Soft Robots Modeled as Kinematic Chains.” IEEE, 2018. <a href="https://doi.org/10.1109/icra.2018.8461106">https://doi.org/10.1109/icra.2018.8461106</a>.
  ieee: 'M. Pozzi <i>et al.</i>, “Efficient FEM-based simulation of soft robots modeled
    as kinematic chains,” presented at the ICRA: International Conference on Robotics
    and Automation, Brisbane, Australia, 2018.'
  ista: 'Pozzi M, Miguel Villalba E, Deimel R, Malvezzi M, Bickel B, Brock O, Prattichizzo
    D. 2018. Efficient FEM-based simulation of soft robots modeled as kinematic chains.
    ICRA: International Conference on Robotics and Automation, 8461106.'
  mla: Pozzi, Maria, et al. <i>Efficient FEM-Based Simulation of Soft Robots Modeled
    as Kinematic Chains</i>. 8461106, IEEE, 2018, doi:<a href="https://doi.org/10.1109/icra.2018.8461106">10.1109/icra.2018.8461106</a>.
  short: M. Pozzi, E. Miguel Villalba, R. Deimel, M. Malvezzi, B. Bickel, O. Brock,
    D. Prattichizzo, in:, IEEE, 2018.
conference:
  end_date: 2018-05-25
  location: Brisbane, Australia
  name: 'ICRA: International Conference on Robotics and Automation'
  start_date: 2018-05-21
date_created: 2019-04-04T09:50:38Z
date_published: 2018-09-10T00:00:00Z
date_updated: 2023-09-19T14:49:03Z
day: '10'
department:
- _id: BeBi
doi: 10.1109/icra.2018.8461106
external_id:
  isi:
  - '000446394503031'
fulldoi: https://doi.org/10.1109/icra.2018.8461106
isi: 1
language:
- iso: eng
month: '09'
oa_version: None
publication_identifier:
  isbn:
  - '9781538630815'
publication_status: published
publisher: IEEE
quality_controlled: '1'
scopus_import: '1'
status: public
title: Efficient FEM-based simulation of soft robots modeled as kinematic chains
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2018'
...
---
_id: '62'
abstract:
- lang: eng
  text: Imaging is a dominant strategy for data collection in neuroscience, yielding
    stacks of images that often scale to gigabytes of data for a single experiment.
    Machine learning algorithms from computer vision can serve as a pair of virtual
    eyes that tirelessly processes these images, automatically detecting and identifying
    microstructures. Unlike learning methods, our Flexible Learning-free Reconstruction
    of Imaged Neural volumes (FLoRIN) pipeline exploits structure-specific contextual
    clues and requires no training. This approach generalizes across different modalities,
    including serially-sectioned scanning electron microscopy (sSEM) of genetically
    labeled and contrast enhanced processes, spectral confocal reflectance (SCoRe)
    microscopy, and high-energy synchrotron X-ray microtomography (μCT) of large tissue
    volumes. We deploy the FLoRIN pipeline on newly published and novel mouse datasets,
    demonstrating the high biological fidelity of the pipeline’s reconstructions.
    FLoRIN reconstructions are of sufficient quality for preliminary biological study,
    for example examining the distribution and morphology of cells or extracting single
    axons from functional data. Compared to existing supervised learning methods,
    FLoRIN is one to two orders of magnitude faster and produces high-quality reconstructions
    that are tolerant to noise and artifacts, as is shown qualitatively and quantitatively.
acknowledgement: 'Equipment was generously donated by the NVIDIA Corporation, and
  made available by the National Science Foundation (NSF) through grant #CNS-1629914.
  This research used resources of the Argonne Leadership Computing Facility, which
  is a DOE Office of Science User Facility supported under Contract DE-AC02-06CH11357.'
article_number: '14247'
article_processing_charge: No
article_type: original
author:
- first_name: Ali
  full_name: Shabazi, Ali
  last_name: Shabazi
- first_name: Jeffery
  full_name: Kinnison, Jeffery
  last_name: Kinnison
- first_name: Rafael
  full_name: Vescovi, Rafael
  last_name: Vescovi
- first_name: Ming
  full_name: Du, Ming
  last_name: Du
- first_name: Robert
  full_name: Hill, Robert
  last_name: Hill
- first_name: Maximilian A
  full_name: Jösch, Maximilian A
  id: 2BD278E6-F248-11E8-B48F-1D18A9856A87
  last_name: Jösch
  orcid: 0000-0002-3937-1330
- first_name: Marc
  full_name: Takeno, Marc
  last_name: Takeno
- first_name: Hongkui
  full_name: Zeng, Hongkui
  last_name: Zeng
- first_name: Nuno
  full_name: Da Costa, Nuno
  last_name: Da Costa
- first_name: Jaime
  full_name: Grutzendler, Jaime
  last_name: Grutzendler
- first_name: Narayanan
  full_name: Kasthuri, Narayanan
  last_name: Kasthuri
- first_name: Walter
  full_name: Scheirer, Walter
  last_name: Scheirer
citation:
  ama: Shabazi A, Kinnison J, Vescovi R, et al. Flexible learning-free segmentation
    and reconstruction of neural volumes. <i>Scientific Reports</i>. 2018;8(1). doi:<a
    href="https://doi.org/10.1038/s41598-018-32628-3">10.1038/s41598-018-32628-3</a>
  apa: Shabazi, A., Kinnison, J., Vescovi, R., Du, M., Hill, R., Jösch, M. A., … Scheirer,
    W. (2018). Flexible learning-free segmentation and reconstruction of neural volumes.
    <i>Scientific Reports</i>. Nature Publishing Group. <a href="https://doi.org/10.1038/s41598-018-32628-3">https://doi.org/10.1038/s41598-018-32628-3</a>
  chicago: Shabazi, Ali, Jeffery Kinnison, Rafael Vescovi, Ming Du, Robert Hill, Maximilian
    A Jösch, Marc Takeno, et al. “Flexible Learning-Free Segmentation and Reconstruction
    of Neural Volumes.” <i>Scientific Reports</i>. Nature Publishing Group, 2018.
    <a href="https://doi.org/10.1038/s41598-018-32628-3">https://doi.org/10.1038/s41598-018-32628-3</a>.
  ieee: A. Shabazi <i>et al.</i>, “Flexible learning-free segmentation and reconstruction
    of neural volumes,” <i>Scientific Reports</i>, vol. 8, no. 1. Nature Publishing
    Group, 2018.
  ista: Shabazi A, Kinnison J, Vescovi R, Du M, Hill R, Jösch MA, Takeno M, Zeng H,
    Da Costa N, Grutzendler J, Kasthuri N, Scheirer W. 2018. Flexible learning-free
    segmentation and reconstruction of neural volumes. Scientific Reports. 8(1), 14247.
  mla: Shabazi, Ali, et al. “Flexible Learning-Free Segmentation and Reconstruction
    of Neural Volumes.” <i>Scientific Reports</i>, vol. 8, no. 1, 14247, Nature Publishing
    Group, 2018, doi:<a href="https://doi.org/10.1038/s41598-018-32628-3">10.1038/s41598-018-32628-3</a>.
  short: A. Shabazi, J. Kinnison, R. Vescovi, M. Du, R. Hill, M.A. Jösch, M. Takeno,
    H. Zeng, N. Da Costa, J. Grutzendler, N. Kasthuri, W. Scheirer, Scientific Reports
    8 (2018).
date_created: 2018-12-11T11:44:25Z
date_published: 2018-09-24T00:00:00Z
date_updated: 2023-09-11T14:02:55Z
day: '24'
ddc:
- '570'
department:
- _id: MaJö
doi: 10.1038/s41598-018-32628-3
external_id:
  isi:
  - '000445336600015'
file:
- access_level: open_access
  checksum: 1a14ae0666b82fbaa04bef110e3f6bf2
  content_type: application/pdf
  creator: dernst
  date_created: 2018-12-17T12:22:24Z
  date_updated: 2020-07-14T12:47:24Z
  file_id: '5699'
  file_name: 2018_ScientificReports_Shahbazi.pdf
  file_size: 4141645
  relation: main_file
file_date_updated: 2020-07-14T12:47:24Z
fulldoi: https://doi.org/10.1038/s41598-018-32628-3
has_accepted_license: '1'
intvolume: '         8'
isi: 1
issue: '1'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
publication: Scientific Reports
publication_status: published
publisher: Nature Publishing Group
publist_id: '7992'
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: http://doi.org/10.1038/s41598-018-36220-7
scopus_import: '1'
status: public
title: Flexible learning-free segmentation and reconstruction of neural volumes
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 8
year: '2018'
...
---
_id: '620'
abstract:
- lang: eng
  text: Clathrin-mediated endocytosis requires the coordinated assembly of various
    endocytic proteins and lipids at the plasma membrane. Accumulating evidence demonstrates
    a crucial role for phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2) in endocytosis,
    but specific roles for PtdIns(4)P other than as the biosynthetic precursor of
    PtdIns(4,5)P2 have not been clarified. In this study we investigated the role
    of PtdIns(4)P or PtdIns(4,5)P2 in receptor-mediated endocytosis through the construction
    of temperature-sensitive (ts) mutants for the PI 4-kinases Stt4p and Pik1p and
    the PtdIns(4) 5-kinase Mss4p. Quantitative analyses of endocytosis revealed that
    both the stt4(ts)pik1(ts) and mss4(ts) mutants have a severe defect in endocytic
    internalization. Live-cell imaging of endocytic protein dynamics in stt4(ts)pik1(ts)
    and mss4(ts) mutants revealed that PtdIns(4)P is required for the recruitment
    of the alpha-factor receptor Ste2p to clathrin-coated pits whereas PtdIns(4,5)P2
    is required for membrane internalization. We also found that the localization
    to endocytic sites of the ENTH/ANTH domain-bearing clathrin adaptors, Ent1p/Ent2p
    and Yap1801p/Yap1802p, is significantly impaired in the stt4(ts)pik1(ts) mutant,
    but not in the mss4(ts) mutant. These results suggest distinct roles in successive
    steps for PtdIns(4)P and PtdIns(4,5)P2 during receptor-mediated endocytosis.
article_number: jcs207696
article_processing_charge: No
author:
- first_name: Wataru
  full_name: Yamamoto, Wataru
  last_name: Yamamoto
- first_name: Suguru
  full_name: Wada, Suguru
  last_name: Wada
- first_name: Makoto
  full_name: Nagano, Makoto
  last_name: Nagano
- first_name: Kaito
  full_name: Aoshima, Kaito
  last_name: Aoshima
- first_name: Daria E
  full_name: Siekhaus, Daria E
  id: 3D224B9E-F248-11E8-B48F-1D18A9856A87
  last_name: Siekhaus
  orcid: 0000-0001-8323-8353
- first_name: Junko
  full_name: Toshima, Junko
  last_name: Toshima
- first_name: Jiro
  full_name: Toshima, Jiro
  last_name: Toshima
citation:
  ama: Yamamoto W, Wada S, Nagano M, et al. Distinct roles for plasma membrane PtdIns
    4 P and PtdIns 4 5 P2 during yeast receptor mediated endocytosis. <i>Journal of
    Cell Science</i>. 2018;131(1). doi:<a href="https://doi.org/10.1242/jcs.207696">10.1242/jcs.207696</a>
  apa: Yamamoto, W., Wada, S., Nagano, M., Aoshima, K., Siekhaus, D. E., Toshima,
    J., &#38; Toshima, J. (2018). Distinct roles for plasma membrane PtdIns 4 P and
    PtdIns 4 5 P2 during yeast receptor mediated endocytosis. <i>Journal of Cell Science</i>.
    Company of Biologists. <a href="https://doi.org/10.1242/jcs.207696">https://doi.org/10.1242/jcs.207696</a>
  chicago: Yamamoto, Wataru, Suguru Wada, Makoto Nagano, Kaito Aoshima, Daria E Siekhaus,
    Junko Toshima, and Jiro Toshima. “Distinct Roles for Plasma Membrane PtdIns 4
    P and PtdIns 4 5 P2 during Yeast Receptor Mediated Endocytosis.” <i>Journal of
    Cell Science</i>. Company of Biologists, 2018. <a href="https://doi.org/10.1242/jcs.207696">https://doi.org/10.1242/jcs.207696</a>.
  ieee: W. Yamamoto <i>et al.</i>, “Distinct roles for plasma membrane PtdIns 4 P
    and PtdIns 4 5 P2 during yeast receptor mediated endocytosis,” <i>Journal of Cell
    Science</i>, vol. 131, no. 1. Company of Biologists, 2018.
  ista: Yamamoto W, Wada S, Nagano M, Aoshima K, Siekhaus DE, Toshima J, Toshima J.
    2018. Distinct roles for plasma membrane PtdIns 4 P and PtdIns 4 5 P2 during yeast
    receptor mediated endocytosis. Journal of Cell Science. 131(1), jcs207696.
  mla: Yamamoto, Wataru, et al. “Distinct Roles for Plasma Membrane PtdIns 4 P and
    PtdIns 4 5 P2 during Yeast Receptor Mediated Endocytosis.” <i>Journal of Cell
    Science</i>, vol. 131, no. 1, jcs207696, Company of Biologists, 2018, doi:<a href="https://doi.org/10.1242/jcs.207696">10.1242/jcs.207696</a>.
  short: W. Yamamoto, S. Wada, M. Nagano, K. Aoshima, D.E. Siekhaus, J. Toshima, J.
    Toshima, Journal of Cell Science 131 (2018).
date_created: 2018-12-11T11:47:32Z
date_published: 2018-01-04T00:00:00Z
date_updated: 2026-06-18T19:01:31Z
day: '04'
ddc:
- '570'
department:
- _id: DaSi
doi: 10.1242/jcs.207696
external_id:
  isi:
  - '000424786900012'
  pmid:
  - '29192062'
fulldoi: https://doi.org/10.1242/jcs.207696
intvolume: '       131'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pubmed/29192062
month: '01'
oa: 1
oa_version: Published Version
pmid: 1
publication: Journal of Cell Science
publication_status: published
publisher: Company of Biologists
publist_id: '7184'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Distinct roles for plasma membrane PtdIns 4 P and PtdIns 4 5 P2 during yeast
  receptor mediated endocytosis
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 131
year: '2018'
...
---
_id: '63'
abstract:
- lang: eng
  text: African cichlids display a remarkable assortment of jaw morphologies, pigmentation
    patterns, and mating behaviors. In addition to this previously documented diversity,
    recent studies have documented a rich diversity of sex chromosomes within these
    fishes. Here we review the known sex-determination network within vertebrates,
    and the extraordinary number of sex chromosomes systems segregating in African
    cichlids. We also propose a model for understanding the unusual number of sex
    chromosome systems within this clade.
acknowledgement: NSF DEB-1830753 and ISTPlus Fellowship
article_number: '480'
article_processing_charge: No
author:
- first_name: William J
  full_name: Gammerdinger, William J
  id: 3A7E01BC-F248-11E8-B48F-1D18A9856A87
  last_name: Gammerdinger
  orcid: 0000-0001-9638-1220
- first_name: Thomas
  full_name: Kocher, Thomas
  last_name: Kocher
citation:
  ama: Gammerdinger WJ, Kocher T. Unusual diversity of sex chromosomes in African
    cichlid fishes. <i>Genes</i>. 2018;9(10). doi:<a href="https://doi.org/10.3390/genes9100480">10.3390/genes9100480</a>
  apa: Gammerdinger, W. J., &#38; Kocher, T. (2018). Unusual diversity of sex chromosomes
    in African cichlid fishes. <i>Genes</i>. MDPI. <a href="https://doi.org/10.3390/genes9100480">https://doi.org/10.3390/genes9100480</a>
  chicago: Gammerdinger, William J, and Thomas Kocher. “Unusual Diversity of Sex Chromosomes
    in African Cichlid Fishes.” <i>Genes</i>. MDPI, 2018. <a href="https://doi.org/10.3390/genes9100480">https://doi.org/10.3390/genes9100480</a>.
  ieee: W. J. Gammerdinger and T. Kocher, “Unusual diversity of sex chromosomes in
    African cichlid fishes,” <i>Genes</i>, vol. 9, no. 10. MDPI, 2018.
  ista: Gammerdinger WJ, Kocher T. 2018. Unusual diversity of sex chromosomes in African
    cichlid fishes. Genes. 9(10), 480.
  mla: Gammerdinger, William J., and Thomas Kocher. “Unusual Diversity of Sex Chromosomes
    in African Cichlid Fishes.” <i>Genes</i>, vol. 9, no. 10, 480, MDPI, 2018, doi:<a
    href="https://doi.org/10.3390/genes9100480">10.3390/genes9100480</a>.
  short: W.J. Gammerdinger, T. Kocher, Genes 9 (2018).
date_created: 2018-12-11T11:44:26Z
date_published: 2018-10-04T00:00:00Z
date_updated: 2025-04-15T06:50:01Z
day: '04'
ddc:
- '570'
department:
- _id: BeVi
doi: 10.3390/genes9100480
ec_funded: 1
external_id:
  isi:
  - '000448656700018'
file:
- access_level: open_access
  checksum: bec527692e2c9b56919c0429634ff337
  content_type: application/pdf
  creator: dernst
  date_created: 2018-12-18T09:54:46Z
  date_updated: 2020-07-14T12:47:27Z
  file_id: '5743'
  file_name: 2018_Genes_Gammerdinger.pdf
  file_size: 1415791
  relation: main_file
file_date_updated: 2020-07-14T12:47:27Z
fulldoi: https://doi.org/10.3390/genes9100480
has_accepted_license: '1'
intvolume: '         9'
isi: 1
issue: '10'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Genes
publication_status: published
publisher: MDPI
publist_id: '7991'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Unusual diversity of sex chromosomes in African cichlid fishes
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 9
year: '2018'
...
---
_id: '6339'
abstract:
- lang: eng
  text: We introduce a diagrammatic Monte Carlo approach to angular momentum properties
    of quantum many-particle systems possessing a macroscopic number of degrees of
    freedom. The treatment is based on a diagrammatic expansion that merges the usual
    Feynman diagrams with the angular momentum diagrams known from atomic and nuclear
    structure theory, thereby incorporating the non-Abelian algebra inherent to quantum
    rotations. Our approach is applicable at arbitrary coupling, is free of systematic
    errors and of finite-size effects, and naturally provides access to the impurity
    Green function. We exemplify the technique by obtaining an all-coupling solution
    of the angulon model; however, the method is quite general and can be applied
    to a broad variety of systems in which particles exchange quantum angular momentum
    with their many-body environment.
article_number: '165301'
article_processing_charge: No
arxiv: 1
author:
- first_name: Giacomo
  full_name: Bighin, Giacomo
  id: 4CA96FD4-F248-11E8-B48F-1D18A9856A87
  last_name: Bighin
  orcid: 0000-0001-8823-9777
- first_name: Timur
  full_name: Tscherbul, Timur
  last_name: Tscherbul
- first_name: Mikhail
  full_name: Lemeshko, Mikhail
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
citation:
  ama: Bighin G, Tscherbul T, Lemeshko M. Diagrammatic Monte Carlo approach to angular
    momentum in quantum many-particle systems. <i>Physical Review Letters</i>. 2018;121(16).
    doi:<a href="https://doi.org/10.1103/physrevlett.121.165301">10.1103/physrevlett.121.165301</a>
  apa: Bighin, G., Tscherbul, T., &#38; Lemeshko, M. (2018). Diagrammatic Monte Carlo
    approach to angular momentum in quantum many-particle systems. <i>Physical Review
    Letters</i>. American Physical Society. <a href="https://doi.org/10.1103/physrevlett.121.165301">https://doi.org/10.1103/physrevlett.121.165301</a>
  chicago: Bighin, Giacomo, Timur Tscherbul, and Mikhail Lemeshko. “Diagrammatic Monte Carlo
    Approach to Angular Momentum in Quantum Many-Particle Systems.” <i>Physical Review
    Letters</i>. American Physical Society, 2018. <a href="https://doi.org/10.1103/physrevlett.121.165301">https://doi.org/10.1103/physrevlett.121.165301</a>.
  ieee: G. Bighin, T. Tscherbul, and M. Lemeshko, “Diagrammatic Monte Carlo approach
    to angular momentum in quantum many-particle systems,” <i>Physical Review Letters</i>,
    vol. 121, no. 16. American Physical Society, 2018.
  ista: Bighin G, Tscherbul T, Lemeshko M. 2018. Diagrammatic Monte Carlo approach
    to angular momentum in quantum many-particle systems. Physical Review Letters.
    121(16), 165301.
  mla: Bighin, Giacomo, et al. “Diagrammatic Monte Carlo Approach to Angular Momentum
    in Quantum Many-Particle Systems.” <i>Physical Review Letters</i>, vol. 121, no.
    16, 165301, American Physical Society, 2018, doi:<a href="https://doi.org/10.1103/physrevlett.121.165301">10.1103/physrevlett.121.165301</a>.
  short: G. Bighin, T. Tscherbul, M. Lemeshko, Physical Review Letters 121 (2018).
date_created: 2019-04-17T10:53:38Z
date_published: 2018-10-16T00:00:00Z
date_updated: 2025-04-15T07:59:29Z
day: '16'
department:
- _id: MiLe
doi: 10.1103/physrevlett.121.165301
external_id:
  arxiv:
  - '1803.07990'
  isi:
  - '000447468400008'
fulldoi: https://doi.org/10.1103/physrevlett.121.165301
intvolume: '       121'
isi: 1
issue: '16'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1803.07990
month: '10'
oa: 1
oa_version: Preprint
project:
- _id: 26031614-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P29902
  name: Quantum rotations in the presence of a many-body environment
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/description-of-rotating-molecules-made-easy/
scopus_import: '1'
status: public
title: Diagrammatic Monte Carlo approach to angular momentum in quantum many-particle
  systems
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 121
year: '2018'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '6354'
abstract:
- lang: eng
  text: Blood platelets are critical for hemostasis and thrombosis, but also play
    diverse roles during immune responses. We have recently reported that platelets
    migrate at sites of infection in vitro and in vivo. Importantly, platelets use
    their ability to migrate to collect and bundle fibrin (ogen)-bound bacteria accomplishing
    efficient intravascular bacterial trapping. Here, we describe a method that allows
    analyzing platelet migration in vitro, focusing on their ability to collect bacteria
    and trap bacteria under flow.
acknowledgement: This protocol was adapted from a previously published study (Gaertner
  et al., 2017). We thank Michael Lorenz for his excellent assistance in bacteria
  culture. This work was funded by the DFG SFB 914 (S.M. [B02 and Z01]), the DFG SFB
  1123 (S.M. [B06]), the DFG FOR 2033 (S.M. and F.G.), the German Centre for Cardiovascular
  Research (DZHK) (MHA 1.4VD [S.M.]), FP7 program (project 260309, PRESTIGE [S.M.]),
  FöFoLe project 947 (F.G.), the Friedrich-Baur-Stiftung project 41/16 (F.G.), Marie
  Sklodowska Curie Individual Fellowship (EU project 747687, LamelliaActin [F.G.]).
article_number: e3018
article_processing_charge: Yes
article_type: original
author:
- first_name: Shuxia
  full_name: Fan, Shuxia
  last_name: Fan
- first_name: Michael
  full_name: Lorenz, Michael
  last_name: Lorenz
- first_name: Steffen
  full_name: Massberg, Steffen
  last_name: Massberg
- first_name: Florian R
  full_name: Gärtner, Florian R
  id: 397A88EE-F248-11E8-B48F-1D18A9856A87
  last_name: Gärtner
  orcid: 0000-0001-6120-3723
citation:
  ama: Fan S, Lorenz M, Massberg S, Gärtner FR. Platelet migration and bacterial trapping
    assay under flow. <i>Bio-Protocol</i>. 2018;8(18). doi:<a href="https://doi.org/10.21769/bioprotoc.3018">10.21769/bioprotoc.3018</a>
  apa: Fan, S., Lorenz, M., Massberg, S., &#38; Gärtner, F. R. (2018). Platelet migration
    and bacterial trapping assay under flow. <i>Bio-Protocol</i>. Bio-Protocol. <a
    href="https://doi.org/10.21769/bioprotoc.3018">https://doi.org/10.21769/bioprotoc.3018</a>
  chicago: Fan, Shuxia, Michael Lorenz, Steffen Massberg, and Florian R Gärtner. “Platelet
    Migration and Bacterial Trapping Assay under Flow.” <i>Bio-Protocol</i>. Bio-Protocol,
    2018. <a href="https://doi.org/10.21769/bioprotoc.3018">https://doi.org/10.21769/bioprotoc.3018</a>.
  ieee: S. Fan, M. Lorenz, S. Massberg, and F. R. Gärtner, “Platelet migration and
    bacterial trapping assay under flow,” <i>Bio-Protocol</i>, vol. 8, no. 18. Bio-Protocol,
    2018.
  ista: Fan S, Lorenz M, Massberg S, Gärtner FR. 2018. Platelet migration and bacterial
    trapping assay under flow. Bio-Protocol. 8(18), e3018.
  mla: Fan, Shuxia, et al. “Platelet Migration and Bacterial Trapping Assay under
    Flow.” <i>Bio-Protocol</i>, vol. 8, no. 18, e3018, Bio-Protocol, 2018, doi:<a
    href="https://doi.org/10.21769/bioprotoc.3018">10.21769/bioprotoc.3018</a>.
  short: S. Fan, M. Lorenz, S. Massberg, F.R. Gärtner, Bio-Protocol 8 (2018).
corr_author: '1'
date_created: 2019-04-29T09:40:33Z
date_published: 2018-09-20T00:00:00Z
date_updated: 2025-05-20T07:43:06Z
day: '20'
ddc:
- '570'
department:
- _id: MiSi
doi: 10.21769/bioprotoc.3018
ec_funded: 1
external_id:
  pmid:
  - '34395806'
file:
- access_level: open_access
  checksum: d4588377e789da7f360b553ae02c5119
  content_type: application/pdf
  creator: dernst
  date_created: 2019-04-30T08:04:33Z
  date_updated: 2020-07-14T12:47:28Z
  file_id: '6360'
  file_name: 2018_BioProtocol_Fan.pdf
  file_size: 2928337
  relation: main_file
file_date_updated: 2020-07-14T12:47:28Z
fulldoi: https://doi.org/10.21769/bioprotoc.3018
has_accepted_license: '1'
intvolume: '         8'
issue: '18'
keyword:
- Platelets
- Cell migration
- Bacteria
- Shear flow
- Fibrinogen
- E. coli
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 260AA4E2-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '747687'
  name: Mechanical Adaptation of Lamellipodial Actin Networks in Migrating Cells
publication: Bio-Protocol
publication_identifier:
  issn:
  - 2331-8325
publication_status: published
publisher: Bio-Protocol
quality_controlled: '1'
status: public
title: Platelet migration and bacterial trapping assay under flow
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2018'
...
---
_id: '6355'
abstract:
- lang: eng
  text: We  prove  that  any  cyclic  quadrilateral  can  be  inscribed  in  any  closed  convex
    C1-curve.  The smoothness condition is not required if the quadrilateral is a
    rectangle.
article_number: e7
article_processing_charge: No
arxiv: 1
author:
- first_name: Arseniy
  full_name: Akopyan, Arseniy
  id: 430D2C90-F248-11E8-B48F-1D18A9856A87
  last_name: Akopyan
  orcid: 0000-0002-2548-617X
- first_name: Sergey
  full_name: Avvakumov, Sergey
  id: 3827DAC8-F248-11E8-B48F-1D18A9856A87
  last_name: Avvakumov
  orcid: 0000-0002-7840-5062
citation:
  ama: Akopyan A, Avvakumov S. Any cyclic quadrilateral can be inscribed in any closed
    convex smooth curve. <i>Forum of Mathematics, Sigma</i>. 2018;6. doi:<a href="https://doi.org/10.1017/fms.2018.7">10.1017/fms.2018.7</a>
  apa: Akopyan, A., &#38; Avvakumov, S. (2018). Any cyclic quadrilateral can be inscribed
    in any closed convex smooth curve. <i>Forum of Mathematics, Sigma</i>. Cambridge
    University Press. <a href="https://doi.org/10.1017/fms.2018.7">https://doi.org/10.1017/fms.2018.7</a>
  chicago: Akopyan, Arseniy, and Sergey Avvakumov. “Any Cyclic Quadrilateral Can Be
    Inscribed in Any Closed Convex Smooth Curve.” <i>Forum of Mathematics, Sigma</i>.
    Cambridge University Press, 2018. <a href="https://doi.org/10.1017/fms.2018.7">https://doi.org/10.1017/fms.2018.7</a>.
  ieee: A. Akopyan and S. Avvakumov, “Any cyclic quadrilateral can be inscribed in
    any closed convex smooth curve,” <i>Forum of Mathematics, Sigma</i>, vol. 6. Cambridge
    University Press, 2018.
  ista: Akopyan A, Avvakumov S. 2018. Any cyclic quadrilateral can be inscribed in
    any closed convex smooth curve. Forum of Mathematics, Sigma. 6, e7.
  mla: Akopyan, Arseniy, and Sergey Avvakumov. “Any Cyclic Quadrilateral Can Be Inscribed
    in Any Closed Convex Smooth Curve.” <i>Forum of Mathematics, Sigma</i>, vol. 6,
    e7, Cambridge University Press, 2018, doi:<a href="https://doi.org/10.1017/fms.2018.7">10.1017/fms.2018.7</a>.
  short: A. Akopyan, S. Avvakumov, Forum of Mathematics, Sigma 6 (2018).
corr_author: '1'
date_created: 2019-04-30T06:09:57Z
date_published: 2018-05-31T00:00:00Z
date_updated: 2026-04-08T07:25:54Z
day: '31'
ddc:
- '510'
department:
- _id: UlWa
- _id: HeEd
- _id: JaMa
doi: 10.1017/fms.2018.7
ec_funded: 1
external_id:
  arxiv:
  - '1712.10205'
  isi:
  - '000433915500001'
file:
- access_level: open_access
  checksum: 5a71b24ba712a3eb2e46165a38fbc30a
  content_type: application/pdf
  creator: dernst
  date_created: 2019-04-30T06:14:58Z
  date_updated: 2020-07-14T12:47:28Z
  file_id: '6356'
  file_name: 2018_ForumMahtematics_Akopyan.pdf
  file_size: 249246
  relation: main_file
file_date_updated: 2020-07-14T12:47:28Z
fulldoi: https://doi.org/10.1017/fms.2018.7
has_accepted_license: '1'
intvolume: '         6'
isi: 1
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
project:
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '716117'
  name: Optimal Transport and Stochastic Dynamics
publication: Forum of Mathematics, Sigma
publication_identifier:
  issn:
  - 2050-5094
publication_status: published
publisher: Cambridge University Press
quality_controlled: '1'
related_material:
  record:
  - id: '8156'
    relation: dissertation_contains
    status: public
status: public
title: Any cyclic quadrilateral can be inscribed in any closed convex smooth curve
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 6
year: '2018'
...
---
_id: '6368'
abstract:
- lang: eng
  text: An optical network of superconducting quantum bits (qubits) is an appealing
    platform for quantum communication and distributed quantum computing, but developing
    a quantum-compatible link between the microwave and optical domains remains an
    outstanding challenge. Operating at T < 100 mK temperatures, as required for quantum
    electrical circuits, we demonstrate a mechanically mediated microwave–optical
    converter with 47% conversion efficiency, and use a classical feed-forward protocol
    to reduce added noise to 38 photons. The feed-forward protocol harnesses our discovery
    that noise emitted from the two converter output ports is strongly correlated
    because both outputs record thermal motion of the same mechanical mode. We also
    discuss a quantum feed-forward protocol that, given high system efficiencies,
    would allow quantum information to be transferred even when thermal phonons enter
    the mechanical element faster than the electro-optic conversion rate.
arxiv: 1
author:
- first_name: Andrew P
  full_name: Higginbotham, Andrew P
  id: 4AD6785A-F248-11E8-B48F-1D18A9856A87
  last_name: Higginbotham
  orcid: 0000-0003-2607-2363
- first_name: P. S.
  full_name: Burns, P. S.
  last_name: Burns
- first_name: M. D.
  full_name: Urmey, M. D.
  last_name: Urmey
- first_name: R. W.
  full_name: Peterson, R. W.
  last_name: Peterson
- first_name: N. S.
  full_name: Kampel, N. S.
  last_name: Kampel
- first_name: B. M.
  full_name: Brubaker, B. M.
  last_name: Brubaker
- first_name: G.
  full_name: Smith, G.
  last_name: Smith
- first_name: K. W.
  full_name: Lehnert, K. W.
  last_name: Lehnert
- first_name: C. A.
  full_name: Regal, C. A.
  last_name: Regal
citation:
  ama: Higginbotham AP, Burns PS, Urmey MD, et al. Harnessing electro-optic correlations
    in an efficient mechanical converter. <i>Nature Physics</i>. 2018;14(10):1038-1042.
    doi:<a href="https://doi.org/10.1038/s41567-018-0210-0">10.1038/s41567-018-0210-0</a>
  apa: Higginbotham, A. P., Burns, P. S., Urmey, M. D., Peterson, R. W., Kampel, N.
    S., Brubaker, B. M., … Regal, C. A. (2018). Harnessing electro-optic correlations
    in an efficient mechanical converter. <i>Nature Physics</i>. Springer Nature.
    <a href="https://doi.org/10.1038/s41567-018-0210-0">https://doi.org/10.1038/s41567-018-0210-0</a>
  chicago: Higginbotham, Andrew P, P. S. Burns, M. D. Urmey, R. W. Peterson, N. S.
    Kampel, B. M. Brubaker, G. Smith, K. W. Lehnert, and C. A. Regal. “Harnessing
    Electro-Optic Correlations in an Efficient Mechanical Converter.” <i>Nature Physics</i>.
    Springer Nature, 2018. <a href="https://doi.org/10.1038/s41567-018-0210-0">https://doi.org/10.1038/s41567-018-0210-0</a>.
  ieee: A. P. Higginbotham <i>et al.</i>, “Harnessing electro-optic correlations in
    an efficient mechanical converter,” <i>Nature Physics</i>, vol. 14, no. 10. Springer
    Nature, pp. 1038–1042, 2018.
  ista: Higginbotham AP, Burns PS, Urmey MD, Peterson RW, Kampel NS, Brubaker BM,
    Smith G, Lehnert KW, Regal CA. 2018. Harnessing electro-optic correlations in
    an efficient mechanical converter. Nature Physics. 14(10), 1038–1042.
  mla: Higginbotham, Andrew P., et al. “Harnessing Electro-Optic Correlations in an
    Efficient Mechanical Converter.” <i>Nature Physics</i>, vol. 14, no. 10, Springer
    Nature, 2018, pp. 1038–42, doi:<a href="https://doi.org/10.1038/s41567-018-0210-0">10.1038/s41567-018-0210-0</a>.
  short: A.P. Higginbotham, P.S. Burns, M.D. Urmey, R.W. Peterson, N.S. Kampel, B.M.
    Brubaker, G. Smith, K.W. Lehnert, C.A. Regal, Nature Physics 14 (2018) 1038–1042.
date_created: 2019-05-03T09:17:20Z
date_published: 2018-10-01T00:00:00Z
date_updated: 2021-01-12T08:07:15Z
day: '01'
doi: 10.1038/s41567-018-0210-0
extern: '1'
external_id:
  arxiv:
  - '1712.06535'
fulldoi: https://doi.org/10.1038/s41567-018-0210-0
intvolume: '        14'
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1712.06535
month: '10'
oa: 1
oa_version: Preprint
page: 1038-1042
publication: Nature Physics
publication_identifier:
  issn:
  - 1745-2473
  - 1745-2481
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Harnessing electro-optic correlations in an efficient mechanical converter
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2018'
...
---
_id: '6369'
abstract:
- lang: eng
  text: We construct a metamaterial from radio-frequency harmonic oscillators, and
    find two topologically distinct phases resulting from dissipation engineered into
    the system. These phases are distinguished by a quantized value of bulk energy
    transport. The impulse response of our circuit is measured and used to reconstruct
    the band structure and winding number of circuit eigenfunctions around a dark
    mode. Our results demonstrate that dissipative topological transport can occur
    in a wider class of physical systems than considered before.
article_number: '220301'
arxiv: 1
author:
- first_name: Eric I.
  full_name: Rosenthal, Eric I.
  last_name: Rosenthal
- first_name: Nicole K.
  full_name: Ehrlich, Nicole K.
  last_name: Ehrlich
- first_name: Mark S.
  full_name: Rudner, Mark S.
  last_name: Rudner
- first_name: Andrew P
  full_name: Higginbotham, Andrew P
  id: 4AD6785A-F248-11E8-B48F-1D18A9856A87
  last_name: Higginbotham
  orcid: 0000-0003-2607-2363
- first_name: K. W.
  full_name: Lehnert, K. W.
  last_name: Lehnert
citation:
  ama: Rosenthal EI, Ehrlich NK, Rudner MS, Higginbotham AP, Lehnert KW. Topological
    phase transition measured in a dissipative metamaterial. <i>Physical Review B</i>.
    2018;97(22). doi:<a href="https://doi.org/10.1103/physrevb.97.220301">10.1103/physrevb.97.220301</a>
  apa: Rosenthal, E. I., Ehrlich, N. K., Rudner, M. S., Higginbotham, A. P., &#38;
    Lehnert, K. W. (2018). Topological phase transition measured in a dissipative
    metamaterial. <i>Physical Review B</i>. American Physical Society (APS). <a href="https://doi.org/10.1103/physrevb.97.220301">https://doi.org/10.1103/physrevb.97.220301</a>
  chicago: Rosenthal, Eric I., Nicole K. Ehrlich, Mark S. Rudner, Andrew P Higginbotham,
    and K. W. Lehnert. “Topological Phase Transition Measured in a Dissipative Metamaterial.”
    <i>Physical Review B</i>. American Physical Society (APS), 2018. <a href="https://doi.org/10.1103/physrevb.97.220301">https://doi.org/10.1103/physrevb.97.220301</a>.
  ieee: E. I. Rosenthal, N. K. Ehrlich, M. S. Rudner, A. P. Higginbotham, and K. W.
    Lehnert, “Topological phase transition measured in a dissipative metamaterial,”
    <i>Physical Review B</i>, vol. 97, no. 22. American Physical Society (APS), 2018.
  ista: Rosenthal EI, Ehrlich NK, Rudner MS, Higginbotham AP, Lehnert KW. 2018. Topological
    phase transition measured in a dissipative metamaterial. Physical Review B. 97(22),
    220301.
  mla: Rosenthal, Eric I., et al. “Topological Phase Transition Measured in a Dissipative
    Metamaterial.” <i>Physical Review B</i>, vol. 97, no. 22, 220301, American Physical
    Society (APS), 2018, doi:<a href="https://doi.org/10.1103/physrevb.97.220301">10.1103/physrevb.97.220301</a>.
  short: E.I. Rosenthal, N.K. Ehrlich, M.S. Rudner, A.P. Higginbotham, K.W. Lehnert,
    Physical Review B 97 (2018).
date_created: 2019-05-03T09:29:49Z
date_published: 2018-06-04T00:00:00Z
date_updated: 2021-01-12T08:07:16Z
day: '04'
doi: 10.1103/physrevb.97.220301
extern: '1'
external_id:
  arxiv:
  - '1802.02243'
fulldoi: https://doi.org/10.1103/physrevb.97.220301
intvolume: '        97'
issue: '22'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1802.02243
month: '06'
oa: 1
oa_version: Preprint
publication: Physical Review B
publication_identifier:
  issn:
  - 2469-9950
  - 2469-9969
publication_status: published
publisher: American Physical Society (APS)
quality_controlled: '1'
status: public
title: Topological phase transition measured in a dissipative metamaterial
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 97
year: '2018'
...
---
_id: '64'
abstract:
- lang: eng
  text: Tropical geometry, an established field in pure mathematics, is a place where
    string theory, mirror symmetry, computational algebra, auction theory, and so
    forth meet and influence one another. In this paper, we report on our discovery
    of a tropical model with self-organized criticality (SOC) behavior. Our model
    is continuous, in contrast to all known models of SOC, and is a certain scaling
    limit of the sandpile model, the first and archetypical model of SOC. We describe
    how our model is related to pattern formation and proportional growth phenomena
    and discuss the dichotomy between continuous and discrete models in several contexts.
    Our aim in this context is to present an idealized tropical toy model (cf. Turing
    reaction-diffusion model), requiring further investigation.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Nikita
  full_name: Kalinin, Nikita
  last_name: Kalinin
- first_name: Aldo
  full_name: Guzmán Sáenz, Aldo
  last_name: Guzmán Sáenz
- first_name: Y
  full_name: Prieto, Y
  last_name: Prieto
- first_name: Mikhail
  full_name: Shkolnikov, Mikhail
  id: 35084A62-F248-11E8-B48F-1D18A9856A87
  last_name: Shkolnikov
  orcid: 0000-0002-4310-178X
- first_name: V
  full_name: Kalinina, V
  last_name: Kalinina
- first_name: Ernesto
  full_name: Lupercio, Ernesto
  last_name: Lupercio
citation:
  ama: Kalinin N, Guzmán Sáenz A, Prieto Y, Shkolnikov M, Kalinina V, Lupercio E.
    Self-organized criticality and pattern emergence through the lens of tropical
    geometry. <i>Proceedings of the National Academy of Sciences of the United States
    of America</i>. 2018;115(35):E8135-E8142. doi:<a href="https://doi.org/10.1073/pnas.1805847115">10.1073/pnas.1805847115</a>
  apa: Kalinin, N., Guzmán Sáenz, A., Prieto, Y., Shkolnikov, M., Kalinina, V., &#38;
    Lupercio, E. (2018). Self-organized criticality and pattern emergence through
    the lens of tropical geometry. <i>Proceedings of the National Academy of Sciences
    of the United States of America</i>. National Academy of Sciences. <a href="https://doi.org/10.1073/pnas.1805847115">https://doi.org/10.1073/pnas.1805847115</a>
  chicago: Kalinin, Nikita, Aldo Guzmán Sáenz, Y Prieto, Mikhail Shkolnikov, V Kalinina,
    and Ernesto Lupercio. “Self-Organized Criticality and Pattern Emergence through
    the Lens of Tropical Geometry.” <i>Proceedings of the National Academy of Sciences
    of the United States of America</i>. National Academy of Sciences, 2018. <a href="https://doi.org/10.1073/pnas.1805847115">https://doi.org/10.1073/pnas.1805847115</a>.
  ieee: N. Kalinin, A. Guzmán Sáenz, Y. Prieto, M. Shkolnikov, V. Kalinina, and E.
    Lupercio, “Self-organized criticality and pattern emergence through the lens of
    tropical geometry,” <i>Proceedings of the National Academy of Sciences of the
    United States of America</i>, vol. 115, no. 35. National Academy of Sciences,
    pp. E8135–E8142, 2018.
  ista: Kalinin N, Guzmán Sáenz A, Prieto Y, Shkolnikov M, Kalinina V, Lupercio E.
    2018. Self-organized criticality and pattern emergence through the lens of tropical
    geometry. Proceedings of the National Academy of Sciences of the United States
    of America. 115(35), E8135–E8142.
  mla: Kalinin, Nikita, et al. “Self-Organized Criticality and Pattern Emergence through
    the Lens of Tropical Geometry.” <i>Proceedings of the National Academy of Sciences
    of the United States of America</i>, vol. 115, no. 35, National Academy of Sciences,
    2018, pp. E8135–42, doi:<a href="https://doi.org/10.1073/pnas.1805847115">10.1073/pnas.1805847115</a>.
  short: N. Kalinin, A. Guzmán Sáenz, Y. Prieto, M. Shkolnikov, V. Kalinina, E. Lupercio,
    Proceedings of the National Academy of Sciences of the United States of America
    115 (2018) E8135–E8142.
date_created: 2018-12-11T11:44:26Z
date_published: 2018-08-28T00:00:00Z
date_updated: 2025-06-03T11:21:16Z
day: '28'
department:
- _id: TaHa
doi: 10.1073/pnas.1805847115
ec_funded: 1
external_id:
  arxiv:
  - '1806.09153'
  isi:
  - '000442861600009'
fulldoi: https://doi.org/10.1073/pnas.1805847115
intvolume: '       115'
isi: 1
issue: '35'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1806.09153
month: '08'
oa: 1
oa_version: Preprint
page: E8135 - E8142
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Proceedings of the National Academy of Sciences of the United States
  of America
publication_identifier:
  issn:
  - 0027-8424
publication_status: published
publisher: National Academy of Sciences
publist_id: '7990'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Self-organized criticality and pattern emergence through the lens of tropical
  geometry
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 115
year: '2018'
...
---
OA_place: repository
OA_type: green
_id: '19806'
abstract:
- lang: eng
  text: Transition-metal dichalcogenides (TMDs) are renowned for their rich and varied
    bulk properties, while their single-layer variants have become one of the most
    prominent examples of two-dimensional materials beyond graphene. Their disparate
    ground states largely depend on transition metal d-electron-derived electronic
    states, on which the vast majority of attention has been concentrated to date.
    Here, we focus on the chalcogen-derived states. From density-functional theory
    calculations together with spin- and angle-resolved photoemission, we find that
    these generically host a co-existence of type-I and type-II three-dimensional
    bulk Dirac fermions as well as ladders of topological surface states and surface
    resonances. We demonstrate how these naturally arise within a single p-orbital
    manifold as a general consequence of a trigonal crystal field, and as such can
    be expected across a large number of compounds. Already, we demonstrate their
    existence in six separate TMDs, opening routes to tune, and ultimately exploit,
    their topological physics.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: M. S.
  full_name: Bahramy, M. S.
  last_name: Bahramy
- first_name: O. J.
  full_name: Clark, O. J.
  last_name: Clark
- first_name: B.-J.
  full_name: Yang, B.-J.
  last_name: Yang
- first_name: J.
  full_name: Feng, J.
  last_name: Feng
- first_name: L.
  full_name: Bawden, L.
  last_name: Bawden
- first_name: J. M.
  full_name: Riley, J. M.
  last_name: Riley
- first_name: I.
  full_name: Marković, I.
  last_name: Marković
- first_name: F.
  full_name: Mazzola, F.
  last_name: Mazzola
- first_name: Veronika
  full_name: Sunko, Veronika
  id: 23cb1cf6-2c7a-11ef-91a4-f72fc19f20b3
  last_name: Sunko
  orcid: 0000-0003-2724-3523
- first_name: D.
  full_name: Biswas, D.
  last_name: Biswas
- first_name: S. P.
  full_name: Cooil, S. P.
  last_name: Cooil
- first_name: M.
  full_name: Jorge, M.
  last_name: Jorge
- first_name: J. W.
  full_name: Wells, J. W.
  last_name: Wells
- first_name: M.
  full_name: Leandersson, M.
  last_name: Leandersson
- first_name: T.
  full_name: Balasubramanian, T.
  last_name: Balasubramanian
- first_name: J.
  full_name: Fujii, J.
  last_name: Fujii
- first_name: I.
  full_name: Vobornik, I.
  last_name: Vobornik
- first_name: J. E.
  full_name: Rault, J. E.
  last_name: Rault
- first_name: T. K.
  full_name: Kim, T. K.
  last_name: Kim
- first_name: M.
  full_name: Hoesch, M.
  last_name: Hoesch
- first_name: K.
  full_name: Okawa, K.
  last_name: Okawa
- first_name: M.
  full_name: Asakawa, M.
  last_name: Asakawa
- first_name: T.
  full_name: Sasagawa, T.
  last_name: Sasagawa
- first_name: T.
  full_name: Eknapakul, T.
  last_name: Eknapakul
- first_name: W.
  full_name: Meevasana, W.
  last_name: Meevasana
- first_name: P. D. C.
  full_name: King, P. D. C.
  last_name: King
citation:
  ama: Bahramy MS, Clark OJ, Yang B-J, et al. Ubiquitous formation of bulk Dirac cones
    and topological surface states from a single orbital manifold in transition-metal
    dichalcogenides. <i>Nature Materials</i>. 2018;17:21-28. doi:<a href="https://doi.org/10.1038/nmat5031">10.1038/nmat5031</a>
  apa: Bahramy, M. S., Clark, O. J., Yang, B.-J., Feng, J., Bawden, L., Riley, J.
    M., … King, P. D. C. (2018). Ubiquitous formation of bulk Dirac cones and topological
    surface states from a single orbital manifold in transition-metal dichalcogenides.
    <i>Nature Materials</i>. Springer Nature. <a href="https://doi.org/10.1038/nmat5031">https://doi.org/10.1038/nmat5031</a>
  chicago: Bahramy, M. S., O. J. Clark, B.-J. Yang, J. Feng, L. Bawden, J. M. Riley,
    I. Marković, et al. “Ubiquitous Formation of Bulk Dirac Cones and Topological
    Surface States from a Single Orbital Manifold in Transition-Metal Dichalcogenides.”
    <i>Nature Materials</i>. Springer Nature, 2018. <a href="https://doi.org/10.1038/nmat5031">https://doi.org/10.1038/nmat5031</a>.
  ieee: M. S. Bahramy <i>et al.</i>, “Ubiquitous formation of bulk Dirac cones and
    topological surface states from a single orbital manifold in transition-metal
    dichalcogenides,” <i>Nature Materials</i>, vol. 17. Springer Nature, pp. 21–28,
    2018.
  ista: Bahramy MS, Clark OJ, Yang B-J, Feng J, Bawden L, Riley JM, Marković I, Mazzola
    F, Sunko V, Biswas D, Cooil SP, Jorge M, Wells JW, Leandersson M, Balasubramanian
    T, Fujii J, Vobornik I, Rault JE, Kim TK, Hoesch M, Okawa K, Asakawa M, Sasagawa
    T, Eknapakul T, Meevasana W, King PDC. 2018. Ubiquitous formation of bulk Dirac
    cones and topological surface states from a single orbital manifold in transition-metal
    dichalcogenides. Nature Materials. 17, 21–28.
  mla: Bahramy, M. S., et al. “Ubiquitous Formation of Bulk Dirac Cones and Topological
    Surface States from a Single Orbital Manifold in Transition-Metal Dichalcogenides.”
    <i>Nature Materials</i>, vol. 17, Springer Nature, 2018, pp. 21–28, doi:<a href="https://doi.org/10.1038/nmat5031">10.1038/nmat5031</a>.
  short: M.S. Bahramy, O.J. Clark, B.-J. Yang, J. Feng, L. Bawden, J.M. Riley, I.
    Marković, F. Mazzola, V. Sunko, D. Biswas, S.P. Cooil, M. Jorge, J.W. Wells, M.
    Leandersson, T. Balasubramanian, J. Fujii, I. Vobornik, J.E. Rault, T.K. Kim,
    M. Hoesch, K. Okawa, M. Asakawa, T. Sasagawa, T. Eknapakul, W. Meevasana, P.D.C.
    King, Nature Materials 17 (2018) 21–28.
date_created: 2025-06-10T09:11:05Z
date_published: 2018-01-01T00:00:00Z
date_updated: 2025-06-10T11:12:41Z
day: '01'
doi: 10.1038/nmat5031
extern: '1'
external_id:
  arxiv:
  - '1702.08177'
  pmid:
  - '29180775'
fulldoi: https://doi.org/10.1038/nmat5031
intvolume: '        17'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.1702.08177
month: '01'
oa: 1
oa_version: Preprint
page: 21-28
pmid: 1
publication: Nature Materials
publication_identifier:
  eissn:
  - 1476-4660
  issn:
  - 1476-1122
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Ubiquitous formation of bulk Dirac cones and topological surface states from
  a single orbital manifold in transition-metal dichalcogenides
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 17
year: '2018'
...
---
OA_place: publisher
OA_type: gold
_id: '19808'
abstract:
- lang: eng
  text: The single-band, quasi-two dimensional metals PdCoO2 and PtCoO2 have recently
    come to prominence because of their extremely long mean free paths, which establish
    them as some of the most electronically pure materials known, and as potential
    hosts of previously unobservable regimes of electronic transport. To fully establish
    their magnetotransport properties, we have studied the magnetoresistance and Hall
    effect in bulk single crystals to which electrical contacts have been made with
    high precision using focused ion beam machining. We observe a strong temperature
    dependence of the Hall resistivity in small applied fields, linked to a large
    violation of Kohler’s rule in the magnetoresistance. We discuss the extent to
    which these observations can be accounted for by standard transport theory.
article_number: '66'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Nabhanila
  full_name: Nandi, Nabhanila
  last_name: Nandi
- first_name: Thomas
  full_name: Scaffidi, Thomas
  last_name: Scaffidi
- first_name: Pallavi
  full_name: Kushwaha, Pallavi
  last_name: Kushwaha
- first_name: Seunghyun
  full_name: Khim, Seunghyun
  last_name: Khim
- first_name: Mark E.
  full_name: Barber, Mark E.
  last_name: Barber
- first_name: Veronika
  full_name: Sunko, Veronika
  id: 23cb1cf6-2c7a-11ef-91a4-f72fc19f20b3
  last_name: Sunko
  orcid: 0000-0003-2724-3523
- first_name: Federico
  full_name: Mazzola, Federico
  last_name: Mazzola
- first_name: Philip D. C.
  full_name: King, Philip D. C.
  last_name: King
- first_name: Helge
  full_name: Rosner, Helge
  last_name: Rosner
- first_name: Philip J. W.
  full_name: Moll, Philip J. W.
  last_name: Moll
- first_name: Markus
  full_name: König, Markus
  last_name: König
- first_name: Joel E.
  full_name: Moore, Joel E.
  last_name: Moore
- first_name: Sean
  full_name: Hartnoll, Sean
  last_name: Hartnoll
- first_name: Andrew P.
  full_name: Mackenzie, Andrew P.
  last_name: Mackenzie
citation:
  ama: Nandi N, Scaffidi T, Kushwaha P, et al. Unconventional magneto-transport in
    ultrapure PdCoO2 and PtCoO2. <i>npj Quantum Materials</i>. 2018;3. doi:<a href="https://doi.org/10.1038/s41535-018-0138-8">10.1038/s41535-018-0138-8</a>
  apa: Nandi, N., Scaffidi, T., Kushwaha, P., Khim, S., Barber, M. E., Sunko, V.,
    … Mackenzie, A. P. (2018). Unconventional magneto-transport in ultrapure PdCoO2
    and PtCoO2. <i>Npj Quantum Materials</i>. Springer Nature. <a href="https://doi.org/10.1038/s41535-018-0138-8">https://doi.org/10.1038/s41535-018-0138-8</a>
  chicago: Nandi, Nabhanila, Thomas Scaffidi, Pallavi Kushwaha, Seunghyun Khim, Mark
    E. Barber, Veronika Sunko, Federico Mazzola, et al. “Unconventional Magneto-Transport
    in Ultrapure PdCoO2 and PtCoO2.” <i>Npj Quantum Materials</i>. Springer Nature,
    2018. <a href="https://doi.org/10.1038/s41535-018-0138-8">https://doi.org/10.1038/s41535-018-0138-8</a>.
  ieee: N. Nandi <i>et al.</i>, “Unconventional magneto-transport in ultrapure PdCoO2
    and PtCoO2,” <i>npj Quantum Materials</i>, vol. 3. Springer Nature, 2018.
  ista: Nandi N, Scaffidi T, Kushwaha P, Khim S, Barber ME, Sunko V, Mazzola F, King
    PDC, Rosner H, Moll PJW, König M, Moore JE, Hartnoll S, Mackenzie AP. 2018. Unconventional
    magneto-transport in ultrapure PdCoO2 and PtCoO2. npj Quantum Materials. 3, 66.
  mla: Nandi, Nabhanila, et al. “Unconventional Magneto-Transport in Ultrapure PdCoO2
    and PtCoO2.” <i>Npj Quantum Materials</i>, vol. 3, 66, Springer Nature, 2018,
    doi:<a href="https://doi.org/10.1038/s41535-018-0138-8">10.1038/s41535-018-0138-8</a>.
  short: N. Nandi, T. Scaffidi, P. Kushwaha, S. Khim, M.E. Barber, V. Sunko, F. Mazzola,
    P.D.C. King, H. Rosner, P.J.W. Moll, M. König, J.E. Moore, S. Hartnoll, A.P. Mackenzie,
    Npj Quantum Materials 3 (2018).
date_created: 2025-06-10T09:12:15Z
date_published: 2018-12-18T00:00:00Z
date_updated: 2025-06-10T11:39:41Z
day: '18'
doi: 10.1038/s41535-018-0138-8
extern: '1'
external_id:
  arxiv:
  - '1804.01896'
fulldoi: https://doi.org/10.1038/s41535-018-0138-8
has_accepted_license: '1'
intvolume: '         3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1038/s41535-018-0138-8
month: '12'
oa: 1
oa_version: Published Version
publication: npj Quantum Materials
publication_identifier:
  issn:
  - 2397-4648
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Unconventional magneto-transport in ultrapure PdCoO2 and PtCoO2
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 3
year: '2018'
...
---
OA_place: repository
OA_type: green
_id: '19813'
abstract:
- lang: eng
  text: "We study the low-energy surface electronic structure of the transition-metal
    dichalcogenide superconductor PdTe2 by spin- and angle-resolved photoemission,
    scanning tunneling microscopy, and density-functional theory-based supercell calculations.
    Comparing PdTe2 with its sister compound PtSe2, we demonstrate how enhanced interlayer
    hopping in the Te-based material drives a band inversion within the antibonding
    \U0001D45D-orbital manifold well above the Fermi level. We show how this mediates
    spin-polarized topological surface states which form rich multivalley Fermi surfaces
    with complex spin textures. Scanning tunneling spectroscopy reveals type-II superconductivity
    at the surface, and moreover shows no evidence for an unconventional component
    of its superconducting order parameter, despite the presence of topological surface
    states."
article_number: '156401'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: O. J.
  full_name: Clark, O. J.
  last_name: Clark
- first_name: M. J.
  full_name: Neat, M. J.
  last_name: Neat
- first_name: K.
  full_name: Okawa, K.
  last_name: Okawa
- first_name: L.
  full_name: Bawden, L.
  last_name: Bawden
- first_name: I.
  full_name: Marković, I.
  last_name: Marković
- first_name: F.
  full_name: Mazzola, F.
  last_name: Mazzola
- first_name: J.
  full_name: Feng, J.
  last_name: Feng
- first_name: Veronika
  full_name: Sunko, Veronika
  id: 23cb1cf6-2c7a-11ef-91a4-f72fc19f20b3
  last_name: Sunko
  orcid: 0000-0003-2724-3523
- first_name: J. M.
  full_name: Riley, J. M.
  last_name: Riley
- first_name: W.
  full_name: Meevasana, W.
  last_name: Meevasana
- first_name: J.
  full_name: Fujii, J.
  last_name: Fujii
- first_name: I.
  full_name: Vobornik, I.
  last_name: Vobornik
- first_name: T. K.
  full_name: Kim, T. K.
  last_name: Kim
- first_name: M.
  full_name: Hoesch, M.
  last_name: Hoesch
- first_name: T.
  full_name: Sasagawa, T.
  last_name: Sasagawa
- first_name: P.
  full_name: Wahl, P.
  last_name: Wahl
- first_name: M. S.
  full_name: Bahramy, M. S.
  last_name: Bahramy
- first_name: P. D. C.
  full_name: King, P. D. C.
  last_name: King
citation:
  ama: Clark OJ, Neat MJ, Okawa K, et al. Fermiology and superconductivity of topological
    surface states in PdTe2. <i>Physical Review Letters</i>. 2018;120(15). doi:<a
    href="https://doi.org/10.1103/physrevlett.120.156401">10.1103/physrevlett.120.156401</a>
  apa: Clark, O. J., Neat, M. J., Okawa, K., Bawden, L., Marković, I., Mazzola, F.,
    … King, P. D. C. (2018). Fermiology and superconductivity of topological surface
    states in PdTe2. <i>Physical Review Letters</i>. American Physical Society. <a
    href="https://doi.org/10.1103/physrevlett.120.156401">https://doi.org/10.1103/physrevlett.120.156401</a>
  chicago: Clark, O. J., M. J. Neat, K. Okawa, L. Bawden, I. Marković, F. Mazzola,
    J. Feng, et al. “Fermiology and Superconductivity of Topological Surface States
    in PdTe2.” <i>Physical Review Letters</i>. American Physical Society, 2018. <a
    href="https://doi.org/10.1103/physrevlett.120.156401">https://doi.org/10.1103/physrevlett.120.156401</a>.
  ieee: O. J. Clark <i>et al.</i>, “Fermiology and superconductivity of topological
    surface states in PdTe2,” <i>Physical Review Letters</i>, vol. 120, no. 15. American
    Physical Society, 2018.
  ista: Clark OJ, Neat MJ, Okawa K, Bawden L, Marković I, Mazzola F, Feng J, Sunko
    V, Riley JM, Meevasana W, Fujii J, Vobornik I, Kim TK, Hoesch M, Sasagawa T, Wahl
    P, Bahramy MS, King PDC. 2018. Fermiology and superconductivity of topological
    surface states in PdTe2. Physical Review Letters. 120(15), 156401.
  mla: Clark, O. J., et al. “Fermiology and Superconductivity of Topological Surface
    States in PdTe2.” <i>Physical Review Letters</i>, vol. 120, no. 15, 156401, American
    Physical Society, 2018, doi:<a href="https://doi.org/10.1103/physrevlett.120.156401">10.1103/physrevlett.120.156401</a>.
  short: O.J. Clark, M.J. Neat, K. Okawa, L. Bawden, I. Marković, F. Mazzola, J. Feng,
    V. Sunko, J.M. Riley, W. Meevasana, J. Fujii, I. Vobornik, T.K. Kim, M. Hoesch,
    T. Sasagawa, P. Wahl, M.S. Bahramy, P.D.C. King, Physical Review Letters 120 (2018).
date_created: 2025-06-10T09:14:51Z
date_published: 2018-04-09T00:00:00Z
date_updated: 2025-06-10T12:16:08Z
day: '09'
doi: 10.1103/physrevlett.120.156401
extern: '1'
external_id:
  arxiv:
  - '1712.04184'
  pmid:
  - '29756894'
fulldoi: https://doi.org/10.1103/physrevlett.120.156401
intvolume: '       120'
issue: '15'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.1712.04184
month: '04'
oa: 1
oa_version: Preprint
pmid: 1
publication: Physical Review Letters
publication_identifier:
  eissn:
  - 1079-7114
  issn:
  - 0031-9007
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Fermiology and superconductivity of topological surface states in PdTe2
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 120
year: '2018'
...
