---
_id: '997'
abstract:
- lang: eng
  text: Recently it was shown that molecules rotating in superfluid helium can be
    described in terms of the angulon quasiparticles (Phys. Rev. Lett. 118, 095301
    (2017)). Here we demonstrate that in the experimentally realized regime the angulon
    can be seen as a point charge on a 2-sphere interacting with a gauge field of
    a non-abelian magnetic monopole. Unlike in several other settings, the gauge fields
    of the angulon problem emerge in the real coordinate space, as opposed to the
    momentum space or some effective parameter space. Furthermore, we find a topological
    transition associated with making the monopole abelian, which takes place in the
    vicinity of the previously reported angulon instabilities. These results pave
    the way for studying topological phenomena in experiments on molecules trapped
    in superfluid helium nanodroplets, as well as on other realizations of orbital
    impurity problems.
article_number: '235301'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Enderalp
  full_name: Yakaboylu, Enderalp
  id: 38CB71F6-F248-11E8-B48F-1D18A9856A87
  last_name: Yakaboylu
  orcid: 0000-0001-5973-0874
- first_name: Andreas
  full_name: Deuchert, Andreas
  id: 4DA65CD0-F248-11E8-B48F-1D18A9856A87
  last_name: Deuchert
  orcid: 0000-0003-3146-6746
- first_name: Mikhail
  full_name: Lemeshko, Mikhail
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
citation:
  ama: Yakaboylu E, Deuchert A, Lemeshko M. Emergence of non-abelian magnetic monopoles
    in a quantum impurity problem. <i>Physical Review Letters</i>. 2017;119(23). doi:<a
    href="https://doi.org/10.1103/PhysRevLett.119.235301">10.1103/PhysRevLett.119.235301</a>
  apa: Yakaboylu, E., Deuchert, A., &#38; Lemeshko, M. (2017). Emergence of non-abelian
    magnetic monopoles in a quantum impurity problem. <i>Physical Review Letters</i>.
    American Physical Society. <a href="https://doi.org/10.1103/PhysRevLett.119.235301">https://doi.org/10.1103/PhysRevLett.119.235301</a>
  chicago: Yakaboylu, Enderalp, Andreas Deuchert, and Mikhail Lemeshko. “Emergence
    of Non-Abelian Magnetic Monopoles in a Quantum Impurity Problem.” <i>Physical
    Review Letters</i>. American Physical Society, 2017. <a href="https://doi.org/10.1103/PhysRevLett.119.235301">https://doi.org/10.1103/PhysRevLett.119.235301</a>.
  ieee: E. Yakaboylu, A. Deuchert, and M. Lemeshko, “Emergence of non-abelian magnetic
    monopoles in a quantum impurity problem,” <i>Physical Review Letters</i>, vol.
    119, no. 23. American Physical Society, 2017.
  ista: Yakaboylu E, Deuchert A, Lemeshko M. 2017. Emergence of non-abelian magnetic
    monopoles in a quantum impurity problem. Physical Review Letters. 119(23), 235301.
  mla: Yakaboylu, Enderalp, et al. “Emergence of Non-Abelian Magnetic Monopoles in
    a Quantum Impurity Problem.” <i>Physical Review Letters</i>, vol. 119, no. 23,
    235301, American Physical Society, 2017, doi:<a href="https://doi.org/10.1103/PhysRevLett.119.235301">10.1103/PhysRevLett.119.235301</a>.
  short: E. Yakaboylu, A. Deuchert, M. Lemeshko, Physical Review Letters 119 (2017).
corr_author: '1'
date_created: 2018-12-11T11:49:36Z
date_published: 2017-12-06T00:00:00Z
date_updated: 2025-04-14T07:26:54Z
day: '06'
department:
- _id: MiLe
- _id: RoSe
doi: 10.1103/PhysRevLett.119.235301
ec_funded: 1
external_id:
  arxiv:
  - '1705.05162'
  isi:
  - '000417132100007'
intvolume: '       119'
isi: 1
issue: '23'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1705.05162
month: '12'
oa: 1
oa_version: Preprint
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694227'
  name: Analysis of quantum many-body systems
- _id: 26031614-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P29902
  name: Quantum rotations in the presence of a many-body environment
publication: Physical Review Letters
publication_identifier:
  issn:
  - 0031-9007
publication_status: published
publisher: American Physical Society
publist_id: '6401'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Emergence of non-abelian magnetic monopoles in a quantum impurity problem
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 119
year: '2017'
...
---
_id: '998'
abstract:
- lang: eng
  text: 'A major open problem on the road to artificial intelligence is the development
    of incrementally learning systems that learn about more and more concepts over
    time from a stream of data. In this work, we introduce a new training strategy,
    iCaRL, that allows learning in such a class-incremental way: only the training
    data for a small number of classes has to be present at the same time and new
    classes can be added progressively. iCaRL learns strong classifiers and a data
    representation simultaneously. This distinguishes it from earlier works that were
    fundamentally limited to fixed data representations and therefore incompatible
    with deep learning architectures. We show by experiments on CIFAR-100 and ImageNet
    ILSVRC 2012 data that iCaRL can learn many classes incrementally over a long period
    of time where other strategies quickly fail. '
article_processing_charge: No
arxiv: 1
author:
- first_name: Sylvestre Alvise
  full_name: Rebuffi, Sylvestre Alvise
  last_name: Rebuffi
- first_name: Alexander
  full_name: Kolesnikov, Alexander
  id: 2D157DB6-F248-11E8-B48F-1D18A9856A87
  last_name: Kolesnikov
- first_name: Georg
  full_name: Sperl, Georg
  id: 4DD40360-F248-11E8-B48F-1D18A9856A87
  last_name: Sperl
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
citation:
  ama: 'Rebuffi SA, Kolesnikov A, Sperl G, Lampert C. iCaRL: Incremental classifier
    and representation learning. In: Vol 2017. IEEE; 2017:5533-5542. doi:<a href="https://doi.org/10.1109/CVPR.2017.587">10.1109/CVPR.2017.587</a>'
  apa: 'Rebuffi, S. A., Kolesnikov, A., Sperl, G., &#38; Lampert, C. (2017). iCaRL:
    Incremental classifier and representation learning (Vol. 2017, pp. 5533–5542).
    Presented at the CVPR: Computer Vision and Pattern Recognition, Honolulu, HA,
    United States: IEEE. <a href="https://doi.org/10.1109/CVPR.2017.587">https://doi.org/10.1109/CVPR.2017.587</a>'
  chicago: 'Rebuffi, Sylvestre Alvise, Alexander Kolesnikov, Georg Sperl, and Christoph
    Lampert. “ICaRL: Incremental Classifier and Representation Learning,” 2017:5533–42.
    IEEE, 2017. <a href="https://doi.org/10.1109/CVPR.2017.587">https://doi.org/10.1109/CVPR.2017.587</a>.'
  ieee: 'S. A. Rebuffi, A. Kolesnikov, G. Sperl, and C. Lampert, “iCaRL: Incremental
    classifier and representation learning,” presented at the CVPR: Computer Vision
    and Pattern Recognition, Honolulu, HA, United States, 2017, vol. 2017, pp. 5533–5542.'
  ista: 'Rebuffi SA, Kolesnikov A, Sperl G, Lampert C. 2017. iCaRL: Incremental classifier
    and representation learning. CVPR: Computer Vision and Pattern Recognition vol.
    2017, 5533–5542.'
  mla: 'Rebuffi, Sylvestre Alvise, et al. <i>ICaRL: Incremental Classifier and Representation
    Learning</i>. Vol. 2017, IEEE, 2017, pp. 5533–42, doi:<a href="https://doi.org/10.1109/CVPR.2017.587">10.1109/CVPR.2017.587</a>.'
  short: S.A. Rebuffi, A. Kolesnikov, G. Sperl, C. Lampert, in:, IEEE, 2017, pp. 5533–5542.
conference:
  end_date: 2017-07-26
  location: Honolulu, HA, United States
  name: 'CVPR: Computer Vision and Pattern Recognition'
  start_date: 2017-07-21
date_created: 2018-12-11T11:49:37Z
date_published: 2017-04-14T00:00:00Z
date_updated: 2025-06-04T08:18:32Z
day: '14'
department:
- _id: ChLa
- _id: ChWo
doi: 10.1109/CVPR.2017.587
ec_funded: 1
external_id:
  arxiv:
  - '1611.07725'
  isi:
  - '000418371405066'
intvolume: '      2017'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1611.07725
month: '04'
oa: 1
oa_version: Submitted Version
page: 5533 - 5542
project:
- _id: 2532554C-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '308036'
  name: Lifelong Learning of Visual Scene Understanding
publication_identifier:
  isbn:
  - 978-153860457-1
publication_status: published
publisher: IEEE
publist_id: '6400'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'iCaRL: Incremental classifier and representation learning'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2017
year: '2017'
...
---
_id: '999'
abstract:
- lang: eng
  text: 'In multi-task learning, a learner is given a collection of prediction tasks
    and needs to solve all of them. In contrast to previous work, which required that
    annotated training data must be available for all tasks, we consider a new setting,
    in which for some tasks, potentially most of them, only unlabeled training data
    is provided. Consequently, to solve all tasks, information must be transferred
    between tasks with labels and tasks without labels. Focusing on an instance-based
    transfer method we analyze two variants of this setting: when the set of labeled
    tasks is fixed, and when it can be actively selected by the learner. We state
    and prove a generalization bound that covers both scenarios and derive from it
    an algorithm for making the choice of labeled tasks (in the active case) and for
    transferring information between the tasks in a principled way. We also illustrate
    the effectiveness of the algorithm on synthetic and real data. '
alternative_title:
- PMLR
article_processing_charge: No
arxiv: 1
author:
- first_name: Anastasia
  full_name: Pentina, Anastasia
  id: 42E87FC6-F248-11E8-B48F-1D18A9856A87
  last_name: Pentina
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
citation:
  ama: 'Pentina A, Lampert C. Multi-task learning with labeled and unlabeled tasks.
    In: Vol 70. ML Research Press; 2017:2807-2816.'
  apa: 'Pentina, A., &#38; Lampert, C. (2017). Multi-task learning with labeled and
    unlabeled tasks (Vol. 70, pp. 2807–2816). Presented at the ICML: International
    Conference on Machine Learning, Sydney, Australia: ML Research Press.'
  chicago: Pentina, Anastasia, and Christoph Lampert. “Multi-Task Learning with Labeled
    and Unlabeled Tasks,” 70:2807–16. ML Research Press, 2017.
  ieee: 'A. Pentina and C. Lampert, “Multi-task learning with labeled and unlabeled
    tasks,” presented at the ICML: International Conference on Machine Learning, Sydney,
    Australia, 2017, vol. 70, pp. 2807–2816.'
  ista: 'Pentina A, Lampert C. 2017. Multi-task learning with labeled and unlabeled
    tasks. ICML: International Conference on Machine Learning, PMLR, vol. 70, 2807–2816.'
  mla: Pentina, Anastasia, and Christoph Lampert. <i>Multi-Task Learning with Labeled
    and Unlabeled Tasks</i>. Vol. 70, ML Research Press, 2017, pp. 2807–16.
  short: A. Pentina, C. Lampert, in:, ML Research Press, 2017, pp. 2807–2816.
conference:
  end_date: 2017-08-11
  location: Sydney, Australia
  name: 'ICML: International Conference on Machine Learning'
  start_date: 2017-08-06
corr_author: '1'
date_created: 2018-12-11T11:49:37Z
date_published: 2017-06-08T00:00:00Z
date_updated: 2025-06-04T08:19:03Z
day: '08'
department:
- _id: ChLa
ec_funded: 1
external_id:
  arxiv:
  - '1602.06518'
  isi:
  - '000683309502093'
intvolume: '        70'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1602.06518
month: '06'
oa: 1
oa_version: Submitted Version
page: 2807 - 2816
project:
- _id: 2532554C-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '308036'
  name: Lifelong Learning of Visual Scene Understanding
publication_identifier:
  isbn:
  - '9781510855144'
publication_status: published
publisher: ML Research Press
publist_id: '6399'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Multi-task learning with labeled and unlabeled tasks
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 70
year: '2017'
...
---
_id: '373'
abstract:
- lang: eng
  text: 'This review captures the synthesis, assembly, properties, and applications
    of copper chalcogenide NCs, which have achieved significant research interest
    in the last decade due to their compositional and structural versatility. The
    outstanding functional properties of these materials stems from the relationship
    between their band structure and defect concentration, including charge carrier
    concentration and electronic conductivity character, which consequently affects
    their optoelectronic, optical, and plasmonic properties. This, combined with several
    metastable crystal phases and stoichiometries and the low energy of formation
    of defects, makes the reproducible synthesis of these materials, with tunable
    parameters, remarkable. Further to this, the review captures the progress of the
    hierarchical assembly of these NCs, which bridges the link between their discrete
    and collective properties. Their ubiquitous application set has cross-cut energy
    conversion (photovoltaics, photocatalysis, thermoelectrics), energy storage (lithium-ion
    batteries, hydrogen generation), emissive materials (plasmonics, LEDs, biolabelling),
    sensors (electrochemical, biochemical), biomedical devices (magnetic resonance
    imaging, X-ray computer tomography), and medical therapies (photochemothermal
    therapies, immunotherapy, radiotherapy, and drug delivery). The confluence of
    advances in the synthesis, assembly, and application of these NCs in the past
    decade has the potential to significantly impact society, both economically and
    environmentally. '
acknowledgement: C.C. and K.M.R. gratefully acknowledge support from Science Foundation
  Ireland (SFI) under the Principal Investigator Program under Contract No. 11PI-1148.
  This work was conducted under the framework of the Irish Government’s Programme
  for Research in Third Level Institutions Cycle 5, National Development Plan 2007−2013
  with the assistance of the European Regional Development Fund. A.S. gratefully acknowledges
  Director’s Postdoctoral Fellowship support from the Los Alamos National Laboratory.
  M.I., O.D., and A.C. gratefully acknowledge support from the European Regional Development
  Funds and the Spanish MINECO Project BOOSTER (ENE2013-46624-C4-3-R). M.I. and O.D.
  thank AGAUR for their Beatriu de Pinós postdoctoral grant (2013 BP-A00344) and Ph.D.
  grant (2015 FI-B00810, 2016 FI-B100067), respectively.
article_processing_charge: No
article_type: review
author:
- first_name: Claudia
  full_name: Coughlan, Claudia
  last_name: Coughlan
- first_name: Maria
  full_name: Ibanez Sabate, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibanez Sabate
  orcid: 0000-0001-5013-2843
- first_name: Oleksandr
  full_name: Dobrozhan, Oleksandr
  last_name: Dobrozhan
- first_name: Ajay
  full_name: Singh, Ajay
  last_name: Singh
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
- first_name: Kevin
  full_name: Ryan, Kevin
  last_name: Ryan
citation:
  ama: Coughlan C, Ibáñez M, Dobrozhan O, Singh A, Cabot A, Ryan K. Compound copper
    chalcogenide nanocrystals. <i>Chemical Reviews</i>. 2017;117(9):5865-6109. doi:<a
    href="https://doi.org/10.1021/acs.chemrev.6b00376">10.1021/acs.chemrev.6b00376</a>
  apa: Coughlan, C., Ibáñez, M., Dobrozhan, O., Singh, A., Cabot, A., &#38; Ryan,
    K. (2017). Compound copper chalcogenide nanocrystals. <i>Chemical Reviews</i>.
    American Chemical Society. <a href="https://doi.org/10.1021/acs.chemrev.6b00376">https://doi.org/10.1021/acs.chemrev.6b00376</a>
  chicago: Coughlan, Claudia, Maria Ibáñez, Oleksandr Dobrozhan, Ajay Singh, Andreu
    Cabot, and Kevin Ryan. “Compound Copper Chalcogenide Nanocrystals.” <i>Chemical
    Reviews</i>. American Chemical Society, 2017. <a href="https://doi.org/10.1021/acs.chemrev.6b00376">https://doi.org/10.1021/acs.chemrev.6b00376</a>.
  ieee: C. Coughlan, M. Ibáñez, O. Dobrozhan, A. Singh, A. Cabot, and K. Ryan, “Compound
    copper chalcogenide nanocrystals,” <i>Chemical Reviews</i>, vol. 117, no. 9. American
    Chemical Society, pp. 5865–6109, 2017.
  ista: Coughlan C, Ibáñez M, Dobrozhan O, Singh A, Cabot A, Ryan K. 2017. Compound
    copper chalcogenide nanocrystals. Chemical Reviews. 117(9), 5865–6109.
  mla: Coughlan, Claudia, et al. “Compound Copper Chalcogenide Nanocrystals.” <i>Chemical
    Reviews</i>, vol. 117, no. 9, American Chemical Society, 2017, pp. 5865–6109,
    doi:<a href="https://doi.org/10.1021/acs.chemrev.6b00376">10.1021/acs.chemrev.6b00376</a>.
  short: C. Coughlan, M. Ibáñez, O. Dobrozhan, A. Singh, A. Cabot, K. Ryan, Chemical
    Reviews 117 (2017) 5865–6109.
date_created: 2018-12-11T11:46:06Z
date_published: 2017-04-10T00:00:00Z
date_updated: 2024-03-05T12:17:59Z
day: '10'
doi: 10.1021/acs.chemrev.6b00376
extern: '1'
external_id:
  pmid:
  - '28394585'
intvolume: '       117'
issue: '9'
language:
- iso: eng
month: '04'
oa_version: None
page: 5865 - 6109
pmid: 1
publication: Chemical Reviews
publication_identifier:
  eissn:
  - 1520-6890
  issn:
  - 0009-2665
publication_status: published
publisher: American Chemical Society
publist_id: '7456'
quality_controlled: '1'
status: public
title: Compound copper chalcogenide nanocrystals
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 117
year: '2017'
...
---
_id: '374'
abstract:
- lang: eng
  text: The conversion of thermal energy to electricity and vice versa by means of
    solid state thermoelectric devices is extremely appealing. However, its cost-effectiveness
    is seriously hampered by the relatively high production cost and low efficiency
    of current thermoelectric materials and devices. To overcome present challenges
    and enable a successful deployment of thermoelectric systems in their wide application
    range, materials with significantly improved performance need to be developed.
    Nanostructuration can help in several ways to reach the very particular group
    of properties required to achieve high thermoelectric performances. Nanodomains
    inserted within a crystalline matrix can provide large charge carrier concentrations
    without strongly influencing their mobility, thus allowing to reach very high
    electrical conductivities. Nanostructured materials contain numerous grain boundaries
    that efficiently scatter mid- and long-wavelength phonons thus reducing the thermal
    conductivity. Furthermore, nanocrystalline domains can enhance the Seebeck coefficient
    by modifying the density of states and/or providing type- and energy-dependent
    charge carrier scattering. All these advantages can only be reached when engineering
    a complex type of material, nanocomposites, with exquisite control over structural
    and chemical parameters at multiple length scales. Since current conventional
    nanomaterial production technologies lack such level of control, alternative strategies
    need to be developed and adjusted to the specifics of the field. A particularly
    suitable approach to produce nanocomposites with unique level of control over
    their structural and compositional parameters is their bottom-up engineering from
    solution-processed nanoparticles. In this work, we review the state-of-the-art
    of this technology applied to the thermoelectric field, including the synthesis
    of nanoparticles of suitable materials with precisely engineered composition and
    surface chemistry, their combination and consolidation into nanostructured materials,
    the strategies to electronically dope such materials and the attempts to fabricate
    thermoelectric devices using nanoparticle-based nanopowders and inks.
acknowledgement: This work was supported by the European Regional Development Funds,
  the Spanish Ministerio de Econom?a y Competitividad through the projects BOOSTER
  (ENE2013-46624-C4-3-R) and SEHTOP (ENE2016-77798-C4-3-R). S. O. thanks AGAUR her
  PhD grant. Y. L. and Y. Z. thank the China Scholarship Council for scholarship support.
  M. I. acknowledges financial support by ETH Carrier Seed Grant (SEED-18 16-2) and
  M. V. K. acknowledges partial financial support by the European Union (EU) via FP7
  ERC Starting Grant 2012 (Project NANOSOLID, GA No. 306733).
article_processing_charge: No
article_type: original
author:
- first_name: Silvia
  full_name: Ortega, Silvia
  last_name: Ortega
- first_name: Maria
  full_name: Ibanez Sabate, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibanez Sabate
  orcid: 0000-0001-5013-2843
- first_name: Yu
  full_name: Liu, Yu
  id: 2A70014E-F248-11E8-B48F-1D18A9856A87
  last_name: Liu
  orcid: 0000-0001-7313-6740
- first_name: Yu
  full_name: Zhang, Yu
  last_name: Zhang
- first_name: Maksym
  full_name: Kovalenko, Maksym
  last_name: Kovalenko
- first_name: Doris
  full_name: Cadavid, Doris
  last_name: Cadavid
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
citation:
  ama: Ortega S, Ibáñez M, Liu Y, et al. Bottom up engineering of thermoelectric nanomaterials
    and devices from solution processed nanoparticle building blocks. <i>Chemical
    Society Reviews</i>. 2017;46(12):3510-3528. doi:<a href="https://doi.org/10.1039/c6cs00567e">10.1039/c6cs00567e</a>
  apa: Ortega, S., Ibáñez, M., Liu, Y., Zhang, Y., Kovalenko, M., Cadavid, D., &#38;
    Cabot, A. (2017). Bottom up engineering of thermoelectric nanomaterials and devices
    from solution processed nanoparticle building blocks. <i>Chemical Society Reviews</i>.
    Royal Society of Chemistry. <a href="https://doi.org/10.1039/c6cs00567e">https://doi.org/10.1039/c6cs00567e</a>
  chicago: Ortega, Silvia, Maria Ibáñez, Yu Liu, Yu Zhang, Maksym Kovalenko, Doris
    Cadavid, and Andreu Cabot. “Bottom up Engineering of Thermoelectric Nanomaterials
    and Devices from Solution Processed Nanoparticle Building Blocks.” <i>Chemical
    Society Reviews</i>. Royal Society of Chemistry, 2017. <a href="https://doi.org/10.1039/c6cs00567e">https://doi.org/10.1039/c6cs00567e</a>.
  ieee: S. Ortega <i>et al.</i>, “Bottom up engineering of thermoelectric nanomaterials
    and devices from solution processed nanoparticle building blocks,” <i>Chemical
    Society Reviews</i>, vol. 46, no. 12. Royal Society of Chemistry, pp. 3510–3528,
    2017.
  ista: Ortega S, Ibáñez M, Liu Y, Zhang Y, Kovalenko M, Cadavid D, Cabot A. 2017.
    Bottom up engineering of thermoelectric nanomaterials and devices from solution
    processed nanoparticle building blocks. Chemical Society Reviews. 46(12), 3510–3528.
  mla: Ortega, Silvia, et al. “Bottom up Engineering of Thermoelectric Nanomaterials
    and Devices from Solution Processed Nanoparticle Building Blocks.” <i>Chemical
    Society Reviews</i>, vol. 46, no. 12, Royal Society of Chemistry, 2017, pp. 3510–28,
    doi:<a href="https://doi.org/10.1039/c6cs00567e">10.1039/c6cs00567e</a>.
  short: S. Ortega, M. Ibáñez, Y. Liu, Y. Zhang, M. Kovalenko, D. Cadavid, A. Cabot,
    Chemical Society Reviews 46 (2017) 3510–3528.
corr_author: '1'
date_created: 2018-12-11T11:46:06Z
date_published: 2017-06-21T00:00:00Z
date_updated: 2024-10-09T20:58:15Z
day: '21'
doi: 10.1039/c6cs00567e
extern: '1'
external_id:
  pmid:
  - '28470243'
intvolume: '        46'
issue: '12'
language:
- iso: eng
month: '06'
oa_version: None
page: 3510 - 3528
pmid: 1
publication: Chemical Society Reviews
publication_identifier:
  eissn:
  - 1460-4744
  issn:
  - 0306-0012
publication_status: published
publisher: Royal Society of Chemistry
publist_id: '7454'
quality_controlled: '1'
status: public
title: Bottom up engineering of thermoelectric nanomaterials and devices from solution
  processed nanoparticle building blocks
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 46
year: '2017'
...
---
_id: '375'
abstract:
- lang: eng
  text: "Branched nanocrystals (NCs) enable high atomic surface exposure within a
    crystalline network that provides avenues for charge transport. This combination
    of properties makes branched NCs particularly suitable for a range of applications
    where both interaction with the media and charge transport are involved. Herein
    we report on the colloidal synthesis of branched ceria NCs by means of a ligand-mediated
    overgrowth mechanism. In particular, the differential coverage of oleic acid as
    an X-type ligand at ceria facets with different atomic density, atomic coordination
    deficiency, and oxygen vacancy density resulted in a preferential growth in the
    [111] direction and thus in the formation of ceria octapods. Alcohols, through
    an esterification alcoholysis reaction, promoted faster growth rates that translated
    into nanostructures with higher geometrical complexity, increasing the branch
    aspect ratio and triggering the formation of side branches. On the other hand,
    the presence of water resulted in a significant reduction of the growth rate,
    decreasing the reaction yield and eliminating side branching, which we associate
    to a blocking of the surface reaction sites or a displacement of the alcoholysis
    reaction. Overall, adjusting the amounts of each chemical, well-defined branched
    ceria NCs with tuned number, thickness, and length of branches and with overall
    size ranging from 5 to 45 nm could be produced. We further demonstrate that such
    branched ceria NCs are able to provide higher surface areas and related oxygen
    storage capacities (OSC) than quasi-spherical NCs.\r\n\r\n"
acknowledgement: This work was supported by the European Regional Development Funds
  and the Spanish MINECO project BOOSTER. T.B. is grateful for the FI-AGAUR Research
  Fellowship Program, Generalitat de Catalunya (2015 FI_B 00744). P.G. acknowledges
  the People Programme (Marie Curie Actions) of the FP7/2007-2013 European Union Program
  (TECNIOspring Grant Agreement No. 600388) and the Agency for Business Competitiveness
  of the Government of Catalonia, ACCIÓ. M.I. thanks AGAUR for Beatriu de Pinós postdoctoral
  grant (2013 BP-A00344). Z.L. thanks the China Scholarship Council for scholarship
  support.
article_processing_charge: No
article_type: original
author:
- first_name: Taisiia
  full_name: Berestok, Taisiia
  last_name: Berestok
- first_name: Pablo
  full_name: Guardia, Pablo
  last_name: Guardia
- first_name: Javier
  full_name: Blanco, Javier
  last_name: Blanco
- first_name: Raquel
  full_name: Nafria, Raquel
  last_name: Nafria
- first_name: Pau
  full_name: Torruella, Pau
  last_name: Torruella
- first_name: Luis
  full_name: López Conesa, Luis
  last_name: López Conesa
- first_name: Sònia
  full_name: Estradé, Sònia
  last_name: Estradé
- first_name: Maria
  full_name: Ibanez Sabate, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibanez Sabate
  orcid: 0000-0001-5013-2843
- first_name: Jonathan
  full_name: De Roo, Jonathan
  last_name: De Roo
- first_name: Zhishan
  full_name: Luo, Zhishan
  last_name: Luo
- first_name: Doris
  full_name: Cadavid, Doris
  last_name: Cadavid
- first_name: José
  full_name: Martins, José
  last_name: Martins
- first_name: Maksym
  full_name: Kovalenko, Maksym
  last_name: Kovalenko
- first_name: Francesca
  full_name: Peiró, Francesca
  last_name: Peiró
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
citation:
  ama: Berestok T, Guardia P, Blanco J, et al. Tuning branching in ceria nanocrystals.
    <i>Chemistry of Materials</i>. 2017;29(10):4418-4424. doi:<a href="https://doi.org/10.1021/acs.chemmater.7b00896">10.1021/acs.chemmater.7b00896</a>
  apa: Berestok, T., Guardia, P., Blanco, J., Nafria, R., Torruella, P., López Conesa,
    L., … Cabot, A. (2017). Tuning branching in ceria nanocrystals. <i>Chemistry of
    Materials</i>. American Chemical Society. <a href="https://doi.org/10.1021/acs.chemmater.7b00896">https://doi.org/10.1021/acs.chemmater.7b00896</a>
  chicago: Berestok, Taisiia, Pablo Guardia, Javier Blanco, Raquel Nafria, Pau Torruella,
    Luis López Conesa, Sònia Estradé, et al. “Tuning Branching in Ceria Nanocrystals.”
    <i>Chemistry of Materials</i>. American Chemical Society, 2017. <a href="https://doi.org/10.1021/acs.chemmater.7b00896">https://doi.org/10.1021/acs.chemmater.7b00896</a>.
  ieee: T. Berestok <i>et al.</i>, “Tuning branching in ceria nanocrystals,” <i>Chemistry
    of Materials</i>, vol. 29, no. 10. American Chemical Society, pp. 4418–4424, 2017.
  ista: Berestok T, Guardia P, Blanco J, Nafria R, Torruella P, López Conesa L, Estradé
    S, Ibáñez M, De Roo J, Luo Z, Cadavid D, Martins J, Kovalenko M, Peiró F, Cabot
    A. 2017. Tuning branching in ceria nanocrystals. Chemistry of Materials. 29(10),
    4418–4424.
  mla: Berestok, Taisiia, et al. “Tuning Branching in Ceria Nanocrystals.” <i>Chemistry
    of Materials</i>, vol. 29, no. 10, American Chemical Society, 2017, pp. 4418–24,
    doi:<a href="https://doi.org/10.1021/acs.chemmater.7b00896">10.1021/acs.chemmater.7b00896</a>.
  short: T. Berestok, P. Guardia, J. Blanco, R. Nafria, P. Torruella, L. López Conesa,
    S. Estradé, M. Ibáñez, J. De Roo, Z. Luo, D. Cadavid, J. Martins, M. Kovalenko,
    F. Peiró, A. Cabot, Chemistry of Materials 29 (2017) 4418–4424.
date_created: 2018-12-11T11:46:07Z
date_published: 2017-04-24T00:00:00Z
date_updated: 2024-03-05T12:19:17Z
day: '24'
doi: 10.1021/acs.chemmater.7b00896
extern: '1'
intvolume: '        29'
issue: '10'
language:
- iso: eng
month: '04'
oa_version: None
page: 4418 - 4424
publication: Chemistry of Materials
publication_identifier:
  eissn:
  - 1520-5002
  issn:
  - 0897-4756
publication_status: published
publisher: American Chemical Society
publist_id: '7455'
quality_controlled: '1'
status: public
title: Tuning branching in ceria nanocrystals
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 29
year: '2017'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '391'
abstract:
- lang: eng
  text: 'Three-dimensional topological insulators are bulk insulators with Z 2 topological
    electronic order that gives rise to conducting light-like surface states. These
    surface electrons are exceptionally resistant to localization by non-magnetic
    disorder, and have been adopted as the basis for a wide range of proposals to
    achieve new quasiparticle species and device functionality. Recent studies have
    yielded a surprise by showing that in spite of resisting localization, topological
    insulator surface electrons can be reshaped by defects into distinctive resonance
    states. Here we use numerical simulations and scanning tunnelling microscopy data
    to show that these resonance states have significance well beyond the localized
    regime usually associated with impurity bands. At native densities in the model
    Bi2X3 (X=Bi, Te) compounds, defect resonance states are predicted to generate
    a new quantum basis for an emergent electron gas that supports diffusive electrical
    transport. '
article_number: '14081'
article_processing_charge: No
author:
- first_name: Yishuai
  full_name: Xu, Yishuai
  last_name: Xu
- first_name: Janet
  full_name: Chiu, Janet
  last_name: Chiu
- first_name: Lin
  full_name: Miao, Lin
  last_name: Miao
- first_name: Haowei
  full_name: He, Haowei
  last_name: He
- first_name: Zhanybek
  full_name: Alpichshev, Zhanybek
  id: 45E67A2A-F248-11E8-B48F-1D18A9856A87
  last_name: Alpichshev
  orcid: 0000-0002-7183-5203
- first_name: Aharon
  full_name: Kapitulnik, Aharon
  last_name: Kapitulnik
- first_name: Rudro
  full_name: Biswas, Rudro
  last_name: Biswas
- first_name: Lewis
  full_name: Wray, Lewis
  last_name: Wray
citation:
  ama: Xu Y, Chiu J, Miao L, et al. Disorder enabled band structure engineering of
    a topological insulator surface. <i>Nature Communications</i>. 2017;8. doi:<a
    href="https://doi.org/10.1038/ncomms14081">10.1038/ncomms14081</a>
  apa: Xu, Y., Chiu, J., Miao, L., He, H., Alpichshev, Z., Kapitulnik, A., … Wray,
    L. (2017). Disorder enabled band structure engineering of a topological insulator
    surface. <i>Nature Communications</i>. Springer Nature. <a href="https://doi.org/10.1038/ncomms14081">https://doi.org/10.1038/ncomms14081</a>
  chicago: Xu, Yishuai, Janet Chiu, Lin Miao, Haowei He, Zhanybek Alpichshev, Aharon
    Kapitulnik, Rudro Biswas, and Lewis Wray. “Disorder Enabled Band Structure Engineering
    of a Topological Insulator Surface.” <i>Nature Communications</i>. Springer Nature,
    2017. <a href="https://doi.org/10.1038/ncomms14081">https://doi.org/10.1038/ncomms14081</a>.
  ieee: Y. Xu <i>et al.</i>, “Disorder enabled band structure engineering of a topological
    insulator surface,” <i>Nature Communications</i>, vol. 8. Springer Nature, 2017.
  ista: Xu Y, Chiu J, Miao L, He H, Alpichshev Z, Kapitulnik A, Biswas R, Wray L.
    2017. Disorder enabled band structure engineering of a topological insulator surface.
    Nature Communications. 8, 14081.
  mla: Xu, Yishuai, et al. “Disorder Enabled Band Structure Engineering of a Topological
    Insulator Surface.” <i>Nature Communications</i>, vol. 8, 14081, Springer Nature,
    2017, doi:<a href="https://doi.org/10.1038/ncomms14081">10.1038/ncomms14081</a>.
  short: Y. Xu, J. Chiu, L. Miao, H. He, Z. Alpichshev, A. Kapitulnik, R. Biswas,
    L. Wray, Nature Communications 8 (2017).
date_created: 2018-12-11T11:46:12Z
date_published: 2017-02-03T00:00:00Z
date_updated: 2025-07-08T15:09:23Z
day: '03'
doi: 10.1038/ncomms14081
extern: '1'
intvolume: '         8'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1038/ncomms14081
month: '02'
oa: 1
oa_version: Published Version
publication: Nature Communications
publication_identifier:
  eissn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
publist_id: '7438'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Disorder enabled band structure engineering of a topological insulator surface
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2017'
...
---
_id: '392'
abstract:
- lang: eng
  text: We used femtosecond optical pump-probe spectroscopy to study the photoinduced
    change in reflectivity of thin films of the electron-doped cuprate La2-xCexCuO4
    (LCCO) with dopings of x=0.08 (underdoped) and x=0.11 (optimally doped). Above
    Tc, we observe fluence-dependent relaxation rates that begin at a temperature
    similar to the one where transport measurements first show signatures of antiferromagnetic
    correlations. Upon suppressing superconductivity with a magnetic field, it is
    found that the fluence and temperature dependence of relaxation rates are consistent
    with bimolecular recombination of electrons and holes across a gap (2ΔAF) originating
    from antiferromagnetic correlations which comprise the pseudogap in electron-doped
    cuprates. This can be used to learn about coupling between electrons and high-energy
    (ω&gt;2ΔAF) excitations in these compounds and set limits on the time scales on
    which antiferromagnetic correlations are static.
acknowledgement: Optical pump-probe work was supported by the Gordon and Betty Moore
  Foundation's EPiQS initiative through Grant No. GBMF4540. Materials growth and characterization
  was supported by AFOSR FA95501410332 and NSF DMR1410665.
author:
- first_name: Inna
  full_name: Vishik, Inna
  last_name: Vishik
- first_name: Fahad
  full_name: Mahmood, Fahad
  last_name: Mahmood
- first_name: Zhanybek
  full_name: Alpichshev, Zhanybek
  id: 45E67A2A-F248-11E8-B48F-1D18A9856A87
  last_name: Alpichshev
  orcid: 0000-0002-7183-5203
- first_name: Nuh
  full_name: Gedik, Nuh
  last_name: Gedik
- first_name: Joshu
  full_name: Higgins, Joshu
  last_name: Higgins
- first_name: Richard
  full_name: Greene, Richard
  last_name: Greene
citation:
  ama: Vishik I, Mahmood F, Alpichshev Z, Gedik N, Higgins J, Greene R. Ultrafast
    dynamics in the presence of antiferromagnetic correlations in electron doped cuprate
    La2 xCexCuO4±δ. <i>Physical Review B</i>. 2017;95(11). doi:<a href="https://doi.org/10.1103/PhysRevB.95.115125">10.1103/PhysRevB.95.115125</a>
  apa: Vishik, I., Mahmood, F., Alpichshev, Z., Gedik, N., Higgins, J., &#38; Greene,
    R. (2017). Ultrafast dynamics in the presence of antiferromagnetic correlations
    in electron doped cuprate La2 xCexCuO4±δ. <i>Physical Review B</i>. American Physical
    Society. <a href="https://doi.org/10.1103/PhysRevB.95.115125">https://doi.org/10.1103/PhysRevB.95.115125</a>
  chicago: Vishik, Inna, Fahad Mahmood, Zhanybek Alpichshev, Nuh Gedik, Joshu Higgins,
    and Richard Greene. “Ultrafast Dynamics in the Presence of Antiferromagnetic Correlations
    in Electron Doped Cuprate La2 XCexCuO4±δ.” <i>Physical Review B</i>. American
    Physical Society, 2017. <a href="https://doi.org/10.1103/PhysRevB.95.115125">https://doi.org/10.1103/PhysRevB.95.115125</a>.
  ieee: I. Vishik, F. Mahmood, Z. Alpichshev, N. Gedik, J. Higgins, and R. Greene,
    “Ultrafast dynamics in the presence of antiferromagnetic correlations in electron
    doped cuprate La2 xCexCuO4±δ,” <i>Physical Review B</i>, vol. 95, no. 11. American
    Physical Society, 2017.
  ista: Vishik I, Mahmood F, Alpichshev Z, Gedik N, Higgins J, Greene R. 2017. Ultrafast
    dynamics in the presence of antiferromagnetic correlations in electron doped cuprate
    La2 xCexCuO4±δ. Physical Review B. 95(11).
  mla: Vishik, Inna, et al. “Ultrafast Dynamics in the Presence of Antiferromagnetic
    Correlations in Electron Doped Cuprate La2 XCexCuO4±δ.” <i>Physical Review B</i>,
    vol. 95, no. 11, American Physical Society, 2017, doi:<a href="https://doi.org/10.1103/PhysRevB.95.115125">10.1103/PhysRevB.95.115125</a>.
  short: I. Vishik, F. Mahmood, Z. Alpichshev, N. Gedik, J. Higgins, R. Greene, Physical
    Review B 95 (2017).
date_created: 2018-12-11T11:46:13Z
date_published: 2017-03-13T00:00:00Z
date_updated: 2021-01-12T07:53:12Z
day: '13'
doi: 10.1103/PhysRevB.95.115125
extern: '1'
intvolume: '        95'
issue: '11'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://dspace.mit.edu/handle/1721.1/109835
month: '03'
oa: 1
oa_version: None
publication: Physical Review B
publication_status: published
publisher: American Physical Society
publist_id: '7437'
status: public
title: Ultrafast dynamics in the presence of antiferromagnetic correlations in electron
  doped cuprate La2 xCexCuO4±δ
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 95
year: '2017'
...
---
_id: '393'
abstract:
- lang: eng
  text: 'We use a three-pulse ultrafast optical spectroscopy to study the relaxation
    processes in a frustrated Mott insulator Na2IrO3. By being able to independently
    produce the out-of-equilibrium bound states (excitons) of doublons and holons
    with the first pulse and suppress the underlying antiferromagnetic order with
    the second one, we were able to elucidate the relaxation mechanism of quasiparticles
    in this system. By observing the difference in the exciton dynamics in the magnetically
    ordered and disordered phases we found that the mass of this quasiparticle is
    mostly determined by its interaction with the surrounding spins. '
acknowledgement: "Z.A. gratefully acknowledges discussions with P. A. Lee and A. Kemper.
  A conversation with J. Zaanen was instrumental in clarifying the physical picture
  described in this paper. We would also like to thank A. Kogar for thoroughly reading
  the manuscript and making valuable comments. This work was supported by Army Research
  Office Grant No. W911NF-15-1-0128 and Gordon and Betty Moore Foundation EPiQS Initiative
  through Grant No. GBMF4540 (time resolved optical spectroscopy), Skoltech, as part
  of the Skoltech NGP program (theory) and National Science Foundation Grant No. DMR-1265162
  (material growth).\r\n\r\n"
author:
- first_name: Zhanybek
  full_name: Alpichshev, Zhanybek
  id: 45E67A2A-F248-11E8-B48F-1D18A9856A87
  last_name: Alpichshev
  orcid: 0000-0002-7183-5203
- first_name: Edbert
  full_name: Sie, Edbert
  last_name: Sie
- first_name: Fahad
  full_name: Mahmood, Fahad
  last_name: Mahmood
- first_name: Gang
  full_name: Cao, Gang
  last_name: Cao
- first_name: Nuh
  full_name: Gedik, Nuh
  last_name: Gedik
citation:
  ama: Alpichshev Z, Sie E, Mahmood F, Cao G, Gedik N. Origin of the exciton mass
    in the frustrated Mott insulator Na2IrO3. <i>Physical Review B</i>. 2017;96(23).
    doi:<a href="https://doi.org/10.1103/PhysRevB.96.235141">10.1103/PhysRevB.96.235141</a>
  apa: Alpichshev, Z., Sie, E., Mahmood, F., Cao, G., &#38; Gedik, N. (2017). Origin
    of the exciton mass in the frustrated Mott insulator Na2IrO3. <i>Physical Review
    B</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevB.96.235141">https://doi.org/10.1103/PhysRevB.96.235141</a>
  chicago: Alpichshev, Zhanybek, Edbert Sie, Fahad Mahmood, Gang Cao, and Nuh Gedik.
    “Origin of the Exciton Mass in the Frustrated Mott Insulator Na2IrO3.” <i>Physical
    Review B</i>. American Physical Society, 2017. <a href="https://doi.org/10.1103/PhysRevB.96.235141">https://doi.org/10.1103/PhysRevB.96.235141</a>.
  ieee: Z. Alpichshev, E. Sie, F. Mahmood, G. Cao, and N. Gedik, “Origin of the exciton
    mass in the frustrated Mott insulator Na2IrO3,” <i>Physical Review B</i>, vol.
    96, no. 23. American Physical Society, 2017.
  ista: Alpichshev Z, Sie E, Mahmood F, Cao G, Gedik N. 2017. Origin of the exciton
    mass in the frustrated Mott insulator Na2IrO3. Physical Review B. 96(23).
  mla: Alpichshev, Zhanybek, et al. “Origin of the Exciton Mass in the Frustrated
    Mott Insulator Na2IrO3.” <i>Physical Review B</i>, vol. 96, no. 23, American Physical
    Society, 2017, doi:<a href="https://doi.org/10.1103/PhysRevB.96.235141">10.1103/PhysRevB.96.235141</a>.
  short: Z. Alpichshev, E. Sie, F. Mahmood, G. Cao, N. Gedik, Physical Review B 96
    (2017).
date_created: 2018-12-11T11:46:13Z
date_published: 2017-12-26T00:00:00Z
date_updated: 2021-01-12T07:53:16Z
day: '26'
doi: 10.1103/PhysRevB.96.235141
extern: '1'
intvolume: '        96'
issue: '23'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://dspace.mit.edu/handle/1721.1/114259
month: '12'
oa: 1
oa_version: None
publication: Physical Review B
publication_status: published
publisher: American Physical Society
publist_id: '7436'
status: public
title: Origin of the exciton mass in the frustrated Mott insulator Na2IrO3
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 96
year: '2017'
...
---
_id: '424'
abstract:
- lang: eng
  text: 'We show that very weak topological assumptions are enough to ensure the existence
    of a Helly-type theorem. More precisely, we show that for any non-negative integers
    b and d there exists an integer h(b, d) such that the following holds. If F is
    a finite family of subsets of Rd such that βi(∩G)≤b for any G⊊F and every 0 ≤
    i ≤ [d/2]-1 then F has Helly number at most h(b, d). Here βi denotes the reduced
    Z2-Betti numbers (with singular homology). These topological conditions are sharp:
    not controlling any of these [d/2] first Betti numbers allow for families with
    unbounded Helly number. Our proofs combine homological non-embeddability results
    with a Ramsey-based approach to build, given an arbitrary simplicial complex K,
    some well-behaved chain map C*(K)→C*(Rd).'
article_processing_charge: No
arxiv: 1
author:
- first_name: Xavier
  full_name: Goaoc, Xavier
  last_name: Goaoc
- first_name: Pavel
  full_name: Paták, Pavel
  last_name: Paták
- first_name: Zuzana
  full_name: Patakova, Zuzana
  last_name: Patakova
  orcid: 0000-0002-3975-1683
- first_name: Martin
  full_name: Tancer, Martin
  last_name: Tancer
  orcid: 0000-0002-1191-6714
- first_name: Uli
  full_name: Wagner, Uli
  id: 36690CA2-F248-11E8-B48F-1D18A9856A87
  last_name: Wagner
  orcid: 0000-0002-1494-0568
citation:
  ama: 'Goaoc X, Paták P, Patakova Z, Tancer M, Wagner U. Bounding helly numbers via
    betti numbers. In: Loebl M, Nešetřil J, Thomas R, eds. <i>A Journey through Discrete
    Mathematics: A Tribute to Jiri Matousek</i>. A Journey Through Discrete Mathematics.
    Springer; 2017:407-447. doi:<a href="https://doi.org/10.1007/978-3-319-44479-6_17">10.1007/978-3-319-44479-6_17</a>'
  apa: 'Goaoc, X., Paták, P., Patakova, Z., Tancer, M., &#38; Wagner, U. (2017). Bounding
    helly numbers via betti numbers. In M. Loebl, J. Nešetřil, &#38; R. Thomas (Eds.),
    <i>A Journey through Discrete Mathematics: A Tribute to Jiri Matousek</i> (pp.
    407–447). Springer. <a href="https://doi.org/10.1007/978-3-319-44479-6_17">https://doi.org/10.1007/978-3-319-44479-6_17</a>'
  chicago: 'Goaoc, Xavier, Pavel Paták, Zuzana Patakova, Martin Tancer, and Uli Wagner.
    “Bounding Helly Numbers via Betti Numbers.” In <i>A Journey through Discrete Mathematics:
    A Tribute to Jiri Matousek</i>, edited by Martin Loebl, Jaroslav Nešetřil, and
    Robin Thomas, 407–47. A Journey Through Discrete Mathematics. Springer, 2017.
    <a href="https://doi.org/10.1007/978-3-319-44479-6_17">https://doi.org/10.1007/978-3-319-44479-6_17</a>.'
  ieee: 'X. Goaoc, P. Paták, Z. Patakova, M. Tancer, and U. Wagner, “Bounding helly
    numbers via betti numbers,” in <i>A Journey through Discrete Mathematics: A Tribute
    to Jiri Matousek</i>, M. Loebl, J. Nešetřil, and R. Thomas, Eds. Springer, 2017,
    pp. 407–447.'
  ista: 'Goaoc X, Paták P, Patakova Z, Tancer M, Wagner U. 2017.Bounding helly numbers
    via betti numbers. In: A Journey through Discrete Mathematics: A Tribute to Jiri
    Matousek. , 407–447.'
  mla: 'Goaoc, Xavier, et al. “Bounding Helly Numbers via Betti Numbers.” <i>A Journey
    through Discrete Mathematics: A Tribute to Jiri Matousek</i>, edited by Martin
    Loebl et al., Springer, 2017, pp. 407–47, doi:<a href="https://doi.org/10.1007/978-3-319-44479-6_17">10.1007/978-3-319-44479-6_17</a>.'
  short: 'X. Goaoc, P. Paták, Z. Patakova, M. Tancer, U. Wagner, in:, M. Loebl, J.
    Nešetřil, R. Thomas (Eds.), A Journey through Discrete Mathematics: A Tribute
    to Jiri Matousek, Springer, 2017, pp. 407–447.'
date_created: 2018-12-11T11:46:24Z
date_published: 2017-10-06T00:00:00Z
date_updated: 2025-06-04T08:47:28Z
day: '06'
department:
- _id: UlWa
doi: 10.1007/978-3-319-44479-6_17
editor:
- first_name: Martin
  full_name: Loebl, Martin
  last_name: Loebl
- first_name: Jaroslav
  full_name: Nešetřil, Jaroslav
  last_name: Nešetřil
- first_name: Robin
  full_name: Thomas, Robin
  last_name: Thomas
external_id:
  arxiv:
  - '1310.4613'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1310.4613
month: '10'
oa: 1
oa_version: Published Version
page: 407 - 447
publication: 'A Journey through Discrete Mathematics: A Tribute to Jiri Matousek'
publication_identifier:
  isbn:
  - 978-331944479-6
publication_status: published
publisher: Springer
publist_id: '7399'
quality_controlled: '1'
related_material:
  record:
  - id: '1512'
    relation: earlier_version
    status: public
scopus_import: '1'
series_title: A Journey Through Discrete Mathematics
status: public
title: Bounding helly numbers via betti numbers
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2017'
...
---
_id: '431'
abstract:
- lang: eng
  text: 'Parallel implementations of stochastic gradient descent (SGD) have received
    significant research attention, thanks to its excellent scalability properties.
    A fundamental barrier when parallelizing SGD is the high bandwidth cost of communicating
    gradient updates between nodes; consequently, several lossy compresion heuristics
    have been proposed, by which nodes only communicate quantized gradients. Although
    effective in practice, these heuristics do not always converge. In this paper,
    we propose Quantized SGD (QSGD), a family of compression schemes with convergence
    guarantees and good practical performance. QSGD allows the user to smoothly trade
    off communication bandwidth and convergence time: nodes can adjust the number
    of bits sent per iteration, at the cost of possibly higher variance. We show that
    this trade-off is inherent, in the sense that improving it past some threshold
    would violate information-theoretic lower bounds. QSGD guarantees convergence
    for convex and non-convex objectives, under asynchrony, and can be extended to
    stochastic variance-reduced techniques. When applied to training deep neural networks
    for image classification and automated speech recognition, QSGD leads to significant
    reductions in end-to-end training time. For instance, on 16GPUs, we can train
    the ResNet-152 network to full accuracy on ImageNet 1.8 × faster than the full-precision
    variant. '
alternative_title:
- Advances in Neural Information Processing Systems
article_processing_charge: No
arxiv: 1
author:
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: Demjan
  full_name: Grubic, Demjan
  last_name: Grubic
- first_name: Jerry
  full_name: Li, Jerry
  last_name: Li
- first_name: Ryota
  full_name: Tomioka, Ryota
  last_name: Tomioka
- first_name: Milan
  full_name: Vojnović, Milan
  last_name: Vojnović
citation:
  ama: 'Alistarh D-A, Grubic D, Li J, Tomioka R, Vojnović M. QSGD: Communication-efficient
    SGD via gradient quantization and encoding. In: Vol 2017. Neural Information Processing
    Systems Foundation; 2017:1710-1721.'
  apa: 'Alistarh, D.-A., Grubic, D., Li, J., Tomioka, R., &#38; Vojnović, M. (2017).
    QSGD: Communication-efficient SGD via gradient quantization and encoding (Vol.
    2017, pp. 1710–1721). Presented at the NIPS: Neural Information Processing System,
    Long Beach, CA, United States: Neural Information Processing Systems Foundation.'
  chicago: 'Alistarh, Dan-Adrian, Demjan Grubic, Jerry Li, Ryota Tomioka, and Milan
    Vojnović. “QSGD: Communication-Efficient SGD via Gradient Quantization and Encoding,”
    2017:1710–21. Neural Information Processing Systems Foundation, 2017.'
  ieee: 'D.-A. Alistarh, D. Grubic, J. Li, R. Tomioka, and M. Vojnović, “QSGD: Communication-efficient
    SGD via gradient quantization and encoding,” presented at the NIPS: Neural Information
    Processing System, Long Beach, CA, United States, 2017, vol. 2017, pp. 1710–1721.'
  ista: 'Alistarh D-A, Grubic D, Li J, Tomioka R, Vojnović M. 2017. QSGD: Communication-efficient
    SGD via gradient quantization and encoding. NIPS: Neural Information Processing
    System, Advances in Neural Information Processing Systems, vol. 2017, 1710–1721.'
  mla: 'Alistarh, Dan-Adrian, et al. <i>QSGD: Communication-Efficient SGD via Gradient
    Quantization and Encoding</i>. Vol. 2017, Neural Information Processing Systems
    Foundation, 2017, pp. 1710–21.'
  short: D.-A. Alistarh, D. Grubic, J. Li, R. Tomioka, M. Vojnović, in:, Neural Information
    Processing Systems Foundation, 2017, pp. 1710–1721.
conference:
  end_date: 2017-12-09
  location: Long Beach, CA, United States
  name: 'NIPS: Neural Information Processing System'
  start_date: 2017-12-04
corr_author: '1'
date_created: 2018-12-11T11:46:26Z
date_published: 2017-01-01T00:00:00Z
date_updated: 2025-09-18T10:07:20Z
day: '01'
department:
- _id: DaAl
external_id:
  arxiv:
  - '1610.02132'
  isi:
  - '000452649401072'
intvolume: '      2017'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1610.02132
month: '01'
oa: 1
oa_version: Submitted Version
page: 1710-1721
publication_identifier:
  issn:
  - 1049-5258
publication_status: published
publisher: Neural Information Processing Systems Foundation
publist_id: '7392'
quality_controlled: '1'
status: public
title: 'QSGD: Communication-efficient SGD via gradient quantization and encoding'
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 2017
year: '2017'
...
---
_id: '432'
abstract:
- lang: eng
  text: 'Recently there has been significant interest in training machine-learning
    models at low precision: by reducing precision, one can reduce computation and
    communication by one order of magnitude. We examine training at reduced precision,
    both from a theoretical and practical perspective, and ask: is it possible to
    train models at end-to-end low precision with provable guarantees? Can this lead
    to consistent order-of-magnitude speedups? We mainly focus on linear models, and
    the answer is yes for linear models. We develop a simple framework called ZipML
    based on one simple but novel strategy called double sampling. Our ZipML framework
    is able to execute training at low precision with no bias, guaranteeing convergence,
    whereas naive quanti- zation would introduce significant bias. We val- idate our
    framework across a range of applica- tions, and show that it enables an FPGA proto-
    type that is up to 6.5 × faster than an implemen- tation using full 32-bit precision.
    We further de- velop a variance-optimal stochastic quantization strategy and show
    that it can make a significant difference in a variety of settings. When applied
    to linear models together with double sampling, we save up to another 1.7 × in
    data movement compared with uniform quantization. When training deep networks
    with quantized models, we achieve higher accuracy than the state-of-the- art XNOR-Net. '
alternative_title:
- PMLR Press
article_processing_charge: No
author:
- first_name: Hantian
  full_name: Zhang, Hantian
  last_name: Zhang
- first_name: Jerry
  full_name: Li, Jerry
  last_name: Li
- first_name: Kaan
  full_name: Kara, Kaan
  last_name: Kara
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: Ji
  full_name: Liu, Ji
  last_name: Liu
- first_name: Ce
  full_name: Zhang, Ce
  last_name: Zhang
citation:
  ama: 'Zhang H, Li J, Kara K, Alistarh D-A, Liu J, Zhang C. ZipML: Training linear
    models with end-to-end low precision, and a little bit of deep learning. In: <i>Proceedings
    of Machine Learning Research</i>. Vol 70. ML Research Press; 2017:4035-4043.'
  apa: 'Zhang, H., Li, J., Kara, K., Alistarh, D.-A., Liu, J., &#38; Zhang, C. (2017).
    ZipML: Training linear models with end-to-end low precision, and a little bit
    of deep learning. In <i>Proceedings of Machine Learning Research</i> (Vol. 70,
    pp. 4035–4043). Sydney, Australia: ML Research Press.'
  chicago: 'Zhang, Hantian, Jerry Li, Kaan Kara, Dan-Adrian Alistarh, Ji Liu, and
    Ce Zhang. “ZipML: Training Linear Models with End-to-End Low Precision, and a
    Little Bit of Deep Learning.” In <i>Proceedings of Machine Learning Research</i>,
    70:4035–43. ML Research Press, 2017.'
  ieee: 'H. Zhang, J. Li, K. Kara, D.-A. Alistarh, J. Liu, and C. Zhang, “ZipML: Training
    linear models with end-to-end low precision, and a little bit of deep learning,”
    in <i>Proceedings of Machine Learning Research</i>, Sydney, Australia, 2017, vol.
    70, pp. 4035–4043.'
  ista: 'Zhang H, Li J, Kara K, Alistarh D-A, Liu J, Zhang C. 2017. ZipML: Training
    linear models with end-to-end low precision, and a little bit of deep learning.
    Proceedings of Machine Learning Research. ICML: International Conference on Machine
    Learning, PMLR Press, vol. 70, 4035–4043.'
  mla: 'Zhang, Hantian, et al. “ZipML: Training Linear Models with End-to-End Low
    Precision, and a Little Bit of Deep Learning.” <i>Proceedings of Machine Learning
    Research</i>, vol. 70, ML Research Press, 2017, pp. 4035–43.'
  short: H. Zhang, J. Li, K. Kara, D.-A. Alistarh, J. Liu, C. Zhang, in:, Proceedings
    of Machine Learning Research, ML Research Press, 2017, pp. 4035–4043.
conference:
  end_date: 2017-08-11
  location: Sydney, Australia
  name: 'ICML: International Conference on Machine Learning'
  start_date: 2017-08-06
corr_author: '1'
date_created: 2018-12-11T11:46:26Z
date_published: 2017-01-01T00:00:00Z
date_updated: 2025-09-18T10:06:02Z
day: '01'
ddc:
- '000'
department:
- _id: DaAl
external_id:
  isi:
  - '000683309504015'
file:
- access_level: open_access
  checksum: 86156ba7f4318e47cef3eb9092593c10
  content_type: application/pdf
  creator: dernst
  date_created: 2019-01-22T08:23:58Z
  date_updated: 2020-07-14T12:46:26Z
  file_id: '5869'
  file_name: 2017_ICML_Zhang.pdf
  file_size: 849345
  relation: main_file
file_date_updated: 2020-07-14T12:46:26Z
has_accepted_license: '1'
isi: 1
language:
- iso: eng
month: '01'
oa: 1
oa_version: Submitted Version
page: 4035 - 4043
publication: Proceedings of Machine Learning Research
publication_identifier:
  isbn:
  - 978-151085514-4
publication_status: published
publisher: ML Research Press
publist_id: '7391'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'ZipML: Training linear models with end-to-end low precision, and a little
  bit of deep learning'
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: ' 70'
year: '2017'
...
---
_id: '443'
abstract:
- lang: eng
  text: Pancreatic cancer has a five-year survival rate of ~8%, with characteristic
    molecular heterogeneity and restricted treatment options. Targeting metabolism
    has emerged as a potentially effective therapeutic strategy for cancers such as
    pancreatic cancer, which are driven by genetic alterations that are not tractable
    drug targets. Although somatic mitochondrial genome (mtDNA) mutations have been
    observed in various tumors types, understanding of metabolic genotype-phenotype
    relationships is limited.
article_processing_charge: No
author:
- first_name: Rae
  full_name: Hardie, Rae
  last_name: Hardie
- first_name: Ellen
  full_name: Van Dam, Ellen
  last_name: Van Dam
- first_name: Mark
  full_name: Cowley, Mark
  last_name: Cowley
- first_name: Ting
  full_name: Han, Ting
  last_name: Han
- first_name: Seher
  full_name: Balaban, Seher
  last_name: Balaban
- first_name: Marina
  full_name: Pajic, Marina
  last_name: Pajic
- first_name: Mark
  full_name: Pinese, Mark
  last_name: Pinese
- first_name: Mary
  full_name: Iconomou, Mary
  last_name: Iconomou
- first_name: Robert
  full_name: Shearer, Robert
  last_name: Shearer
- first_name: Jessie
  full_name: Mckenna, Jessie
  last_name: Mckenna
- first_name: David
  full_name: Miller, David
  last_name: Miller
- first_name: Nicola
  full_name: Waddell, Nicola
  last_name: Waddell
- first_name: John
  full_name: Pearson, John
  last_name: Pearson
- first_name: Sean
  full_name: Grimmond, Sean
  last_name: Grimmond
- first_name: Leonid A
  full_name: Sazanov, Leonid A
  id: 338D39FE-F248-11E8-B48F-1D18A9856A87
  last_name: Sazanov
  orcid: 0000-0002-0977-7989
- first_name: Andrew
  full_name: Biankin, Andrew
  last_name: Biankin
- first_name: Silas
  full_name: Villas Boas, Silas
  last_name: Villas Boas
- first_name: Andrew
  full_name: Hoy, Andrew
  last_name: Hoy
- first_name: Nigel
  full_name: Turner, Nigel
  last_name: Turner
- first_name: Darren
  full_name: Saunders, Darren
  last_name: Saunders
citation:
  ama: Hardie R, Van Dam E, Cowley M, et al. Mitochondrial mutations and metabolic
    adaptation in pancreatic cancer. <i>Cancer &#38; Metabolism</i>. 2017;5(2). doi:<a
    href="https://doi.org/10.1186/s40170-017-0164-1">10.1186/s40170-017-0164-1</a>
  apa: Hardie, R., Van Dam, E., Cowley, M., Han, T., Balaban, S., Pajic, M., … Saunders,
    D. (2017). Mitochondrial mutations and metabolic adaptation in pancreatic cancer.
    <i>Cancer &#38; Metabolism</i>. BioMed Central. <a href="https://doi.org/10.1186/s40170-017-0164-1">https://doi.org/10.1186/s40170-017-0164-1</a>
  chicago: Hardie, Rae, Ellen Van Dam, Mark Cowley, Ting Han, Seher Balaban, Marina
    Pajic, Mark Pinese, et al. “Mitochondrial Mutations and Metabolic Adaptation in
    Pancreatic Cancer.” <i>Cancer &#38; Metabolism</i>. BioMed Central, 2017. <a href="https://doi.org/10.1186/s40170-017-0164-1">https://doi.org/10.1186/s40170-017-0164-1</a>.
  ieee: R. Hardie <i>et al.</i>, “Mitochondrial mutations and metabolic adaptation
    in pancreatic cancer,” <i>Cancer &#38; Metabolism</i>, vol. 5, no. 2. BioMed Central,
    2017.
  ista: Hardie R, Van Dam E, Cowley M, Han T, Balaban S, Pajic M, Pinese M, Iconomou
    M, Shearer R, Mckenna J, Miller D, Waddell N, Pearson J, Grimmond S, Sazanov LA,
    Biankin A, Villas Boas S, Hoy A, Turner N, Saunders D. 2017. Mitochondrial mutations
    and metabolic adaptation in pancreatic cancer. Cancer &#38; Metabolism. 5(2).
  mla: Hardie, Rae, et al. “Mitochondrial Mutations and Metabolic Adaptation in Pancreatic
    Cancer.” <i>Cancer &#38; Metabolism</i>, vol. 5, no. 2, BioMed Central, 2017,
    doi:<a href="https://doi.org/10.1186/s40170-017-0164-1">10.1186/s40170-017-0164-1</a>.
  short: R. Hardie, E. Van Dam, M. Cowley, T. Han, S. Balaban, M. Pajic, M. Pinese,
    M. Iconomou, R. Shearer, J. Mckenna, D. Miller, N. Waddell, J. Pearson, S. Grimmond,
    L.A. Sazanov, A. Biankin, S. Villas Boas, A. Hoy, N. Turner, D. Saunders, Cancer
    &#38; Metabolism 5 (2017).
date_created: 2018-12-11T11:46:30Z
date_published: 2017-01-30T00:00:00Z
date_updated: 2025-09-18T10:03:47Z
day: '30'
ddc:
- '570'
doi: 10.1186/s40170-017-0164-1
extern: '1'
external_id:
  isi:
  - '000396463900001'
file:
- access_level: open_access
  checksum: 337a65786875f64a1fe9fc0ac24767dc
  content_type: application/pdf
  creator: dernst
  date_created: 2019-01-22T08:17:56Z
  date_updated: 2020-07-14T12:46:29Z
  file_id: '5868'
  file_name: 2017_Cancer_Hardie.pdf
  file_size: 1609174
  relation: main_file
file_date_updated: 2020-07-14T12:46:29Z
has_accepted_license: '1'
intvolume: '         5'
isi: 1
issue: '2'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '01'
oa: 1
oa_version: Published Version
publication: Cancer & Metabolism
publication_status: published
publisher: BioMed Central
publist_id: '7380'
quality_controlled: '1'
status: public
title: Mitochondrial mutations and metabolic adaptation in pancreatic cancer
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 5
year: '2017'
...
---
_id: '444'
abstract:
- lang: eng
  text: Complex I (NADH:ubiquinone oxidoreductase) plays a central role in cellular
    energy generation, contributing to the proton motive force used to produce ATP.
    It couples the transfer of two electrons between NADH and quinone to translocation
    of four protons across the membrane. It is the largest protein assembly of bacterial
    and mitochondrial respiratory chains, composed, in mammals, of up to 45 subunits
    with a total molecular weight of ∼1 MDa. Bacterial enzyme is about half the size,
    providing the important “minimal” model of complex I. The l-shaped complex consists
    of a hydrophilic arm, where electron transfer occurs, and a membrane arm, where
    proton translocation takes place. Previously, we have solved the crystal structures
    of the hydrophilic domain of complex I from Thermus thermophilus and of the membrane
    domain from Escherichia coli, followed by the atomic structure of intact, entire
    complex I from T. thermophilus. Recently, we have solved by cryo-EM a first complete
    atomic structure of mammalian (ovine) mitochondrial complex I. Core subunits are
    well conserved from the bacterial version, whilst supernumerary subunits form
    an interlinked, stabilizing shell around the core. Subunits containing additional
    cofactors, including Zn ion, NADPH and phosphopantetheine, probably have regulatory
    roles. Dysfunction of mitochondrial complex I is implicated in many human neurodegenerative
    diseases. The structure of mammalian enzyme provides many insights into complex
    I mechanism, assembly, maturation and dysfunction, allowing detailed molecular
    analysis of disease-causing mutations.
author:
- first_name: Leonid A
  full_name: Sazanov, Leonid A
  id: 338D39FE-F248-11E8-B48F-1D18A9856A87
  last_name: Sazanov
  orcid: 0000-0002-0977-7989
citation:
  ama: 'Sazanov LA. Structure of respiratory complex I: “Minimal” bacterial and “de
    luxe” mammalian versions. In: Wikström M, ed. <i>Mechanisms of Primary Energy
    Transduction in Biology </i>. Mechanisms of Primary Energy Transduction in Biology
    . Royal Society of Chemistry; 2017:25-59. doi:<a href="https://doi.org/10.1039/9781788010405-00025">10.1039/9781788010405-00025</a>'
  apa: 'Sazanov, L. A. (2017). Structure of respiratory complex I: “Minimal” bacterial
    and “de luxe” mammalian versions. In M. Wikström (Ed.), <i>Mechanisms of primary
    energy transduction in biology </i> (pp. 25–59). Royal Society of Chemistry. <a
    href="https://doi.org/10.1039/9781788010405-00025">https://doi.org/10.1039/9781788010405-00025</a>'
  chicago: 'Sazanov, Leonid A. “Structure of Respiratory Complex I: ‘Minimal’ Bacterial
    and ‘de Luxe’ Mammalian Versions.” In <i>Mechanisms of Primary Energy Transduction
    in Biology </i>, edited by Mårten Wikström, 25–59. Mechanisms of Primary Energy
    Transduction in Biology . Royal Society of Chemistry, 2017. <a href="https://doi.org/10.1039/9781788010405-00025">https://doi.org/10.1039/9781788010405-00025</a>.'
  ieee: 'L. A. Sazanov, “Structure of respiratory complex I: ‘Minimal’ bacterial and
    ‘de luxe’ mammalian versions,” in <i>Mechanisms of primary energy transduction
    in biology </i>, M. Wikström, Ed. Royal Society of Chemistry, 2017, pp. 25–59.'
  ista: 'Sazanov LA. 2017.Structure of respiratory complex I: “Minimal” bacterial
    and “de luxe” mammalian versions. In: Mechanisms of primary energy transduction
    in biology . , 25–59.'
  mla: 'Sazanov, Leonid A. “Structure of Respiratory Complex I: ‘Minimal’ Bacterial
    and ‘de Luxe’ Mammalian Versions.” <i>Mechanisms of Primary Energy Transduction
    in Biology </i>, edited by Mårten Wikström, Royal Society of Chemistry, 2017,
    pp. 25–59, doi:<a href="https://doi.org/10.1039/9781788010405-00025">10.1039/9781788010405-00025</a>.'
  short: L.A. Sazanov, in:, M. Wikström (Ed.), Mechanisms of Primary Energy Transduction
    in Biology , Royal Society of Chemistry, 2017, pp. 25–59.
corr_author: '1'
date_created: 2018-12-11T11:46:30Z
date_published: 2017-11-29T00:00:00Z
date_updated: 2024-10-09T20:58:14Z
day: '29'
department:
- _id: LeSa
doi: 10.1039/9781788010405-00025
editor:
- first_name: Mårten
  full_name: Wikström, Mårten
  last_name: Wikström
language:
- iso: eng
month: '11'
oa_version: None
page: 25 - 59
publication: 'Mechanisms of primary energy transduction in biology '
publication_identifier:
  isbn:
  - 978-1-78262-865-1
publication_status: published
publisher: Royal Society of Chemistry
publist_id: '7379'
quality_controlled: '1'
series_title: 'Mechanisms of Primary Energy Transduction in Biology '
status: public
title: 'Structure of respiratory complex I: “Minimal” bacterial and “de luxe” mammalian
  versions'
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2017'
...
---
_id: '445'
abstract:
- lang: eng
  text: The Loschmidt echo, defined as the overlap between quantum wave function evolved
    with different Hamiltonians, quantifies the sensitivity of quantum dynamics to
    perturbations and is often used as a probe of quantum chaos. In this work we consider
    the behavior of the Loschmidt echo in the many-body localized phase, which is
    characterized by emergent local integrals of motion and provides a generic example
    of nonergodic dynamics. We demonstrate that the fluctuations of the Loschmidt
    echo decay as a power law in time in the many-body localized phase, in contrast
    to the exponential decay in few-body ergodic systems. We consider the spin-echo
    generalization of the Loschmidt echo and argue that the corresponding correlation
    function saturates to a finite value in localized systems. Slow, power-law decay
    of fluctuations of such spin-echo-type overlap is related to the operator spreading
    and is present only in the many-body localized phase, but not in a noninteracting
    Anderson insulator. While most of the previously considered probes of dephasing
    dynamics could be understood by approximating physical spin operators with local
    integrals of motion, the Loschmidt echo and its generalizations crucially depend
    on the full expansion of the physical operators via local integrals of motion
    operators, as well as operators which flip local integrals of motion. Hence these
    probes allow one to get insights into the relation between physical operators
    and local integrals of motion and access the operator spreading in the many-body
    localized phase.
acknowledgement: "This research was supported in part by the National\r\nScience Foundation
  under Grant No. NSF PHY11-25915.\r\nM.S. was supported by Gordon and Betty Moore
  Foundation’s\r\nEPiQS Initiative through Grant No. GBMF4307. D.A. also\r\nacknowledges
  support by Swiss National Science Foundation."
article_processing_charge: No
arxiv: 1
author:
- first_name: Maksym
  full_name: Serbyn, Maksym
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
- first_name: Dimitry
  full_name: Abanin, Dimitry
  last_name: Abanin
citation:
  ama: Serbyn M, Abanin D. Loschmidt echo in many body localized phases. <i>Physical
    Review B - Condensed Matter and Materials Physics</i>. 2017;96(1). doi:<a href="https://doi.org/10.1103/PhysRevB.96.014202">10.1103/PhysRevB.96.014202</a>
  apa: Serbyn, M., &#38; Abanin, D. (2017). Loschmidt echo in many body localized
    phases. <i>Physical Review B - Condensed Matter and Materials Physics</i>. American
    Physical Society. <a href="https://doi.org/10.1103/PhysRevB.96.014202">https://doi.org/10.1103/PhysRevB.96.014202</a>
  chicago: Serbyn, Maksym, and Dimitry Abanin. “Loschmidt Echo in Many Body Localized
    Phases.” <i>Physical Review B - Condensed Matter and Materials Physics</i>. American
    Physical Society, 2017. <a href="https://doi.org/10.1103/PhysRevB.96.014202">https://doi.org/10.1103/PhysRevB.96.014202</a>.
  ieee: M. Serbyn and D. Abanin, “Loschmidt echo in many body localized phases,” <i>Physical
    Review B - Condensed Matter and Materials Physics</i>, vol. 96, no. 1. American
    Physical Society, 2017.
  ista: Serbyn M, Abanin D. 2017. Loschmidt echo in many body localized phases. Physical
    Review B - Condensed Matter and Materials Physics. 96(1).
  mla: Serbyn, Maksym, and Dimitry Abanin. “Loschmidt Echo in Many Body Localized
    Phases.” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol.
    96, no. 1, American Physical Society, 2017, doi:<a href="https://doi.org/10.1103/PhysRevB.96.014202">10.1103/PhysRevB.96.014202</a>.
  short: M. Serbyn, D. Abanin, Physical Review B - Condensed Matter and Materials
    Physics 96 (2017).
date_created: 2018-12-11T11:46:31Z
date_published: 2017-07-12T00:00:00Z
date_updated: 2025-09-04T06:59:31Z
day: '12'
doi: 10.1103/PhysRevB.96.014202
extern: '1'
external_id:
  arxiv:
  - '1701.07772'
intvolume: '        96'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1701.07772
month: '07'
oa: 1
oa_version: Preprint
publication: Physical Review B - Condensed Matter and Materials Physics
publication_status: published
publisher: American Physical Society
publist_id: '7378'
status: public
title: Loschmidt echo in many body localized phases
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 96
year: '2017'
...
---
_id: '447'
abstract:
- lang: eng
  text: We consider last passage percolation (LPP) models with exponentially distributed
    random variables, which are linked to the totally asymmetric simple exclusion
    process (TASEP). The competition interface for LPP was introduced and studied
    in Ferrari and Pimentel (2005a) for cases where the corresponding exclusion process
    had a rarefaction fan. Here we consider situations with a shock and determine
    the law of the fluctuations of the competition interface around its deter- ministic
    law of large number position. We also study the multipoint distribution of the
    LPP around the shock, extending our one-point result of Ferrari and Nejjar (2015).
article_processing_charge: No
article_type: original
author:
- first_name: Patrik
  full_name: Ferrari, Patrik
  last_name: Ferrari
- first_name: Peter
  full_name: Nejjar, Peter
  id: 4BF426E2-F248-11E8-B48F-1D18A9856A87
  last_name: Nejjar
citation:
  ama: Ferrari P, Nejjar P. Fluctuations of the competition interface in presence
    of shocks. <i>Revista Latino-Americana de Probabilidade e Estatística</i>. 2017;9:299-325.
    doi:<a href="https://doi.org/10.30757/ALEA.v14-17">10.30757/ALEA.v14-17</a>
  apa: Ferrari, P., &#38; Nejjar, P. (2017). Fluctuations of the competition interface
    in presence of shocks. <i>Revista Latino-Americana de Probabilidade e Estatística</i>.
    Instituto Nacional de Matematica Pura e Aplicada. <a href="https://doi.org/10.30757/ALEA.v14-17">https://doi.org/10.30757/ALEA.v14-17</a>
  chicago: Ferrari, Patrik, and Peter Nejjar. “Fluctuations of the Competition Interface
    in Presence of Shocks.” <i>Revista Latino-Americana de Probabilidade e Estatística</i>.
    Instituto Nacional de Matematica Pura e Aplicada, 2017. <a href="https://doi.org/10.30757/ALEA.v14-17">https://doi.org/10.30757/ALEA.v14-17</a>.
  ieee: P. Ferrari and P. Nejjar, “Fluctuations of the competition interface in presence
    of shocks,” <i>Revista Latino-Americana de Probabilidade e Estatística</i>, vol.
    9. Instituto Nacional de Matematica Pura e Aplicada, pp. 299–325, 2017.
  ista: Ferrari P, Nejjar P. 2017. Fluctuations of the competition interface in presence
    of shocks. Revista Latino-Americana de Probabilidade e Estatística. 9, 299–325.
  mla: Ferrari, Patrik, and Peter Nejjar. “Fluctuations of the Competition Interface
    in Presence of Shocks.” <i>Revista Latino-Americana de Probabilidade e Estatística</i>,
    vol. 9, Instituto Nacional de Matematica Pura e Aplicada, 2017, pp. 299–325, doi:<a
    href="https://doi.org/10.30757/ALEA.v14-17">10.30757/ALEA.v14-17</a>.
  short: P. Ferrari, P. Nejjar, Revista Latino-Americana de Probabilidade e Estatística
    9 (2017) 299–325.
corr_author: '1'
date_created: 2018-12-11T11:46:31Z
date_published: 2017-03-23T00:00:00Z
date_updated: 2025-09-18T10:02:36Z
day: '23'
department:
- _id: LaEr
- _id: JaMa
doi: 10.30757/ALEA.v14-17
ec_funded: 1
external_id:
  isi:
  - '000404011700017'
intvolume: '         9'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://alea.impa.br/articles/v14/14-17.pdf
month: '03'
oa: 1
oa_version: Submitted Version
page: 299 - 325
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '338804'
  name: Random matrices, universality and disordered quantum systems
publication: Revista Latino-Americana de Probabilidade e Estatística
publication_status: published
publisher: Instituto Nacional de Matematica Pura e Aplicada
publist_id: '7376'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Fluctuations of the competition interface in presence of shocks
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 9
year: '2017'
...
---
_id: '452'
abstract:
- lang: eng
  text: 'Spinning tops and yo-yos have long fascinated cultures around the world with
    their unexpected, graceful motions that seemingly elude gravity. Yet, due to the
    exceeding difficulty of creating stably spinning objects of asymmetric shape in
    a manual trial-and-error process, there has been little departure from rotationally
    symmetric designs. With modern 3D printing technologies, however, we can manufacture
    shapes of almost unbounded complexity at the press of a button, shifting this
    design complexity toward computation. In this article, we describe an algorithm
    to generate designs for spinning objects by optimizing their mass distribution:
    as input, the user provides a solid 3D model and a desired axis of rotation. Our
    approach then modifies the interior mass distribution such that the principal
    directions of the moment of inertia align with the target rotation frame. To create
    voids inside the model, we represent its volume with an adaptive multiresolution
    voxelization and optimize the discrete voxel fill values using a continuous, nonlinear
    formulation. We further optimize for rotational stability by maximizing the dominant
    principal moment. Our method is well-suited for a variety of 3D printed models,
    ranging from characters to abstract shapes. We demonstrate tops and yo-yos that
    spin surprisingly stably despite their asymmetric appearance.'
acknowledgement: "This project was supported in part by the ERC Starting Grant iModel
  (StG-2012-306877). Emily Whiting was supported by the ETH Zurich/Marie Curie COFUND
  Postdoctoral Fellowship. \r\nFirst and foremost, we would like to thank our editor
  Steve Marschner for his invaluable feedback. We were fortunate to get further help
  from Maurizio Nitti for model design, Romain Prévost for Make-It-Stand comparisons,
  Alexander Sorkine-Hornung, Kaan Yücer, and Changil Kim for video and photo assistance,
  Ronnie Gänsli for metal casting, Alec Jacobson for the posed Elephant and Armadillo
  models, and Romain Prévost and Amit Bermano for print preparation. Model sources
  include: Woven Ring: generated by “Sculpture Generator 1” by Carlo H. Séquin, UC
  Berkeley; Elephant: De Espona model library, courtesy of Robert Sumner; T-Rex: TurboSquid;
  Armadillo: Stanford Computer Graphics Laboratory; and Utah Teapot: Martin Newell,
  University of Utah. "
article_processing_charge: No
article_type: original
author:
- first_name: Moritz
  full_name: Bächer, Moritz
  last_name: Bächer
- first_name: Bernd
  full_name: Bickel, Bernd
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
- first_name: Emily
  full_name: Whiting, Emily
  last_name: Whiting
- first_name: Olga
  full_name: Sorkine Hornung, Olga
  last_name: Sorkine Hornung
citation:
  ama: 'Bächer M, Bickel B, Whiting E, Sorkine Hornung O. Spin it: Optimizing moment
    of inertia for spinnable objects. <i>Communications of the ACM</i>. 2017;60(8):92-99.
    doi:<a href="https://doi.org/10.1145/3068766">10.1145/3068766</a>'
  apa: 'Bächer, M., Bickel, B., Whiting, E., &#38; Sorkine Hornung, O. (2017). Spin
    it: Optimizing moment of inertia for spinnable objects. <i>Communications of the
    ACM</i>. ACM. <a href="https://doi.org/10.1145/3068766">https://doi.org/10.1145/3068766</a>'
  chicago: 'Bächer, Moritz, Bernd Bickel, Emily Whiting, and Olga Sorkine Hornung.
    “Spin It: Optimizing Moment of Inertia for Spinnable Objects.” <i>Communications
    of the ACM</i>. ACM, 2017. <a href="https://doi.org/10.1145/3068766">https://doi.org/10.1145/3068766</a>.'
  ieee: 'M. Bächer, B. Bickel, E. Whiting, and O. Sorkine Hornung, “Spin it: Optimizing
    moment of inertia for spinnable objects,” <i>Communications of the ACM</i>, vol.
    60, no. 8. ACM, pp. 92–99, 2017.'
  ista: 'Bächer M, Bickel B, Whiting E, Sorkine Hornung O. 2017. Spin it: Optimizing
    moment of inertia for spinnable objects. Communications of the ACM. 60(8), 92–99.'
  mla: 'Bächer, Moritz, et al. “Spin It: Optimizing Moment of Inertia for Spinnable
    Objects.” <i>Communications of the ACM</i>, vol. 60, no. 8, ACM, 2017, pp. 92–99,
    doi:<a href="https://doi.org/10.1145/3068766">10.1145/3068766</a>.'
  short: M. Bächer, B. Bickel, E. Whiting, O. Sorkine Hornung, Communications of the
    ACM 60 (2017) 92–99.
date_created: 2018-12-11T11:46:33Z
date_published: 2017-08-01T00:00:00Z
date_updated: 2025-08-05T14:20:24Z
day: '01'
department:
- _id: BeBi
doi: 10.1145/3068766
intvolume: '        60'
issue: '8'
language:
- iso: eng
month: '08'
oa_version: None
page: 92 - 99
publication: Communications of the ACM
publication_status: published
publisher: ACM
publist_id: '7370'
quality_controlled: '1'
related_material:
  record:
  - id: '2080'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: 'Spin it: Optimizing moment of inertia for spinnable objects'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 60
year: '2017'
...
---
OA_place: publisher
OA_type: hybrid
_id: '453'
abstract:
- lang: eng
  text: Most kinesin motors move in only one direction along microtubules. Members
    of the kinesin-5 subfamily were initially described as unidirectional plus-end-directed
    motors and shown to produce piconewton forces. However, some fungal kinesin-5
    motors are bidirectional. The force production of a bidirectional kinesin-5 has
    not yet been measured. Therefore, it remains unknown whether the mechanism of
    the unconventional minus-end-directed motility differs fundamentally from that
    of plus-end-directed stepping. Using force spectroscopy, we have measured here
    the forces that ensembles of purified budding yeast kinesin-5 Cin8 produce in
    microtubule gliding assays in both plus- and minus-end direction. Correlation
    analysis of pause forces demonstrated that individual Cin8 molecules produce additive
    forces in both directions of movement. In ensembles, Cin8 motors were able to
    produce single-motor forces up to a magnitude of ∼1.5 pN. Hence, these properties
    appear to be conserved within the kinesin-5 subfamily. Force production was largely
    independent of the directionality of movement, indicating similarities between
    the motility mechanisms for both directions. These results provide constraints
    for the development of models for the bidirectional motility mechanism of fission
    yeast kinesin-5 and provide insight into the function of this mitotic motor.
acknowledgement: 'The plasmid for full-length kinesin-1 was a gift from G. Holzwarth
  and J. Macosko with permission from J. Howard. We thank I. Lueke and N. I. Cade
  for technical assistance. G.P. thanks the Francis Crick Institute, and in particular
  the Surrey and Salbreux groups, for their hospitality during his sabbatical stay,
  as well as Imperial College London for making it possible. This work was supported
  by the Francis Crick Institute, which receives its core funding from Cancer Research
  UK (FC001163), the United Kingdom Medical Research Council (FC001163), and the Wellcome
  Trust (FC001163), and by Imperial College London. J.R. was also supported by a Sir
  Henry Wellcome Postdoctoral Fellowship (100145/Z/12/Z) and T.S. by the European
  Research Council (Advanced Grant, project 323042). '
article_processing_charge: No
article_type: original
author:
- first_name: Todd
  full_name: Fallesen, Todd
  last_name: Fallesen
- first_name: Johanna
  full_name: Roostalu, Johanna
  last_name: Roostalu
- first_name: Christian F
  full_name: Düllberg, Christian F
  id: 459064DC-F248-11E8-B48F-1D18A9856A87
  last_name: Düllberg
  orcid: 0000-0001-6335-9748
- first_name: Gunnar
  full_name: Pruessner, Gunnar
  last_name: Pruessner
- first_name: Thomas
  full_name: Surrey, Thomas
  last_name: Surrey
citation:
  ama: Fallesen T, Roostalu J, Düllberg CF, Pruessner G, Surrey T. Ensembles of bidirectional
    kinesin Cin8 produce additive forces in both directions of movement. <i>Biophysical
    Journal</i>. 2017;113(9):2055-2067. doi:<a href="https://doi.org/10.1016/j.bpj.2017.09.006">10.1016/j.bpj.2017.09.006</a>
  apa: Fallesen, T., Roostalu, J., Düllberg, C. F., Pruessner, G., &#38; Surrey, T.
    (2017). Ensembles of bidirectional kinesin Cin8 produce additive forces in both
    directions of movement. <i>Biophysical Journal</i>. Biophysical Society. <a href="https://doi.org/10.1016/j.bpj.2017.09.006">https://doi.org/10.1016/j.bpj.2017.09.006</a>
  chicago: Fallesen, Todd, Johanna Roostalu, Christian F Düllberg, Gunnar Pruessner,
    and Thomas Surrey. “Ensembles of Bidirectional Kinesin Cin8 Produce Additive Forces
    in Both Directions of Movement.” <i>Biophysical Journal</i>. Biophysical Society,
    2017. <a href="https://doi.org/10.1016/j.bpj.2017.09.006">https://doi.org/10.1016/j.bpj.2017.09.006</a>.
  ieee: T. Fallesen, J. Roostalu, C. F. Düllberg, G. Pruessner, and T. Surrey, “Ensembles
    of bidirectional kinesin Cin8 produce additive forces in both directions of movement,”
    <i>Biophysical Journal</i>, vol. 113, no. 9. Biophysical Society, pp. 2055–2067,
    2017.
  ista: Fallesen T, Roostalu J, Düllberg CF, Pruessner G, Surrey T. 2017. Ensembles
    of bidirectional kinesin Cin8 produce additive forces in both directions of movement.
    Biophysical Journal. 113(9), 2055–2067.
  mla: Fallesen, Todd, et al. “Ensembles of Bidirectional Kinesin Cin8 Produce Additive
    Forces in Both Directions of Movement.” <i>Biophysical Journal</i>, vol. 113,
    no. 9, Biophysical Society, 2017, pp. 2055–67, doi:<a href="https://doi.org/10.1016/j.bpj.2017.09.006">10.1016/j.bpj.2017.09.006</a>.
  short: T. Fallesen, J. Roostalu, C.F. Düllberg, G. Pruessner, T. Surrey, Biophysical
    Journal 113 (2017) 2055–2067.
date_created: 2018-12-11T11:46:33Z
date_published: 2017-11-07T00:00:00Z
date_updated: 2025-08-05T14:08:52Z
day: '07'
ddc:
- '570'
department:
- _id: MaLo
doi: 10.1016/j.bpj.2017.09.006
external_id:
  pmid:
  - '29117528'
file:
- access_level: open_access
  checksum: 99a2474088e20ac74b1882c4fbbb45b1
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:14:03Z
  date_updated: 2020-07-14T12:46:31Z
  file_id: '5052'
  file_name: IST-2018-965-v1+1_2017_Duellberg_Ensembles_of.pdf
  file_size: 977192
  relation: main_file
file_date_updated: 2020-07-14T12:46:31Z
has_accepted_license: '1'
intvolume: '       113'
issue: '9'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 2055 - 2067
pmid: 1
publication: Biophysical Journal
publication_identifier:
  eissn:
  - 1542-0086
  issn:
  - 0006-3495
publication_status: published
publisher: Biophysical Society
publist_id: '7369'
pubrep_id: '965'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Ensembles of bidirectional kinesin Cin8 produce additive forces in both directions
  of movement
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 113
year: '2017'
...
---
_id: '459'
abstract:
- lang: eng
  text: The social insects bees, wasps, ants, and termites are species-rich, occur
    in many habitats, and often constitute a large part of the biomass. Many are also
    invasive, including species of termites, the red imported fire ant, and the Argentine
    ant. While invasive social insects have been a problem in Southern Europe for
    some time, Central Europa was free of invasive ant species until recently because
    most ants are adapted to warmer climates. Only in the 1990s, did Lasius neglectus,
    a close relative of the common black garden ant, arrive in Germany. First described
    in 1990 based on individuals collected in Budapest, the species has since been
    detected for example in France, Germany, Spain, England, and Kyrgyzstan. The species
    is spread with soil during construction work or plantings, and L. neglectus therefore
    is often found in parks and botanical gardens. Another invasive ant now spreading
    in southern Germany is Formica fuscocinerea, which occurs along rivers, including
    in the sandy floodplains of the river Isar. As is typical of pioneer species,
    F. fuscocinerea quickly becomes extremely abundant and therefore causes problems
    for example on playgrounds in Munich. All invasive ant species are characterized
    by cooperation across nests, leading to strongly interconnected, very large super-colonies.
    The resulting dominance results in the extinction of native ant species as well
    as other arthropod species and thus in the reduction of biodiversity.
article_processing_charge: No
author:
- first_name: Sylvia
  full_name: Cremer, Sylvia
  id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
  last_name: Cremer
  orcid: 0000-0002-2193-3868
citation:
  ama: 'Cremer S. Invasive Ameisen in Europa: Wie sie sich ausbreiten und die heimische
    Fauna verändern. <i>Rundgespräche Forum Ökologie</i>. 2017;46:105-116.'
  apa: 'Cremer, S. (2017). Invasive Ameisen in Europa: Wie sie sich ausbreiten und
    die heimische Fauna verändern. <i>Rundgespräche Forum Ökologie</i>. Verlag Dr.
    Friedrich Pfeil.'
  chicago: 'Cremer, Sylvia. “Invasive Ameisen in Europa: Wie Sie Sich Ausbreiten Und
    Die Heimische Fauna Verändern.” <i>Rundgespräche Forum Ökologie</i>. Verlag Dr.
    Friedrich Pfeil, 2017.'
  ieee: 'S. Cremer, “Invasive Ameisen in Europa: Wie sie sich ausbreiten und die heimische
    Fauna verändern,” <i>Rundgespräche Forum Ökologie</i>, vol. 46. Verlag Dr. Friedrich
    Pfeil, pp. 105–116, 2017.'
  ista: 'Cremer S. 2017. Invasive Ameisen in Europa: Wie sie sich ausbreiten und die
    heimische Fauna verändern. Rundgespräche Forum Ökologie. 46, 105–116.'
  mla: 'Cremer, Sylvia. “Invasive Ameisen in Europa: Wie Sie Sich Ausbreiten Und Die
    Heimische Fauna Verändern.” <i>Rundgespräche Forum Ökologie</i>, vol. 46, Verlag
    Dr. Friedrich Pfeil, 2017, pp. 105–16.'
  short: S. Cremer, Rundgespräche Forum Ökologie 46 (2017) 105–116.
corr_author: '1'
date_created: 2018-12-11T11:46:35Z
date_published: 2017-04-04T00:00:00Z
date_updated: 2024-10-09T20:58:13Z
day: '04'
ddc:
- '592'
department:
- _id: SyCr
file:
- access_level: open_access
  checksum: 4919baf9050415ca151fe22497379f78
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:15:52Z
  date_updated: 2020-07-14T12:46:32Z
  file_id: '5175'
  file_name: IST-2018-962-v1+1_044676698_07_Cremer__Invasive_Ameisen_in_Europa_...__BY-ND_.pdf
  file_size: 1711131
  relation: main_file
file_date_updated: 2020-07-14T12:46:32Z
has_accepted_license: '1'
intvolume: '        46'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nd/4.0/
month: '04'
oa: 1
oa_version: Published Version
page: 105 - 116
publication: Rundgespräche Forum Ökologie
publication_identifier:
  issn:
  - 2366-2875
publication_status: published
publisher: Verlag Dr. Friedrich Pfeil
publist_id: '7362'
pubrep_id: '962'
quality_controlled: '1'
status: public
title: 'Invasive Ameisen in Europa: Wie sie sich ausbreiten und die heimische Fauna
  verändern'
tmp:
  image: /image/cc_by_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nd/4.0/legalcode
  name: Creative Commons Attribution-NoDerivatives 4.0 International (CC BY-ND 4.0)
  short: CC BY-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 46
year: '2017'
...
---
OA_place: repository
OA_type: green
_id: '12193'
abstract:
- lang: eng
  text: DNA methylation regulates eukaryotic gene expression and is extensively reprogrammed
    during animal development. However, whether developmental methylation reprogramming
    during the sporophytic life cycle of flowering plants regulates genes is presently
    unknown. Here we report a distinctive gene-targeted RNA-directed DNA methylation
    (RdDM) activity in the Arabidopsis thaliana male sexual lineage that regulates
    gene expression in meiocytes. Loss of sexual-lineage-specific RdDM causes mis-splicing
    of the MPS1 gene (also known as PRD2), thereby disrupting meiosis. Our results
    establish a regulatory paradigm in which de novo methylation creates a cell-lineage-specific
    epigenetic signature that controls gene expression and contributes to cellular
    function in flowering plants.
acknowledgement: We thank Daniel Zilberman for intellectual contributions to this
  work and assistance with manuscript preparation. We also thank Caroline Dean, Kirsten
  Bomblies, Vinod Kumar, Siobhan Brady and Sophien Kamoun for comments on the manuscript,
  Hugh Dickinson and Josephine Hellberg for developing the meiocyte isolation method,
  Giles Oldroyd for the pGWB13-Bar vector, Elisa Fiume for the pMDC107-NTF vector,
  Matthew Hartley, Matthew Couchman and Tjelvar Sten Gunnar Olsson for bioinformatics
  support, and the John Innes Centre Bioimaging Facility (Elaine Barclay and Grant
  Calder) for their assistance with microscopy. This work was funded by a Biotechnology
  and Biological Sciences Research Council (BBSRC) David Phillips Fellowship (BBL0250431)
  to X.F., a BBSRC grant (BBM01973X1) to J.H., and a Sainsbury PhD Studentship to
  J.W.
article_processing_charge: No
article_type: original
author:
- first_name: James
  full_name: Walker, James
  last_name: Walker
- first_name: Hongbo
  full_name: Gao, Hongbo
  last_name: Gao
- first_name: Jingyi
  full_name: Zhang, Jingyi
  last_name: Zhang
- first_name: Billy
  full_name: Aldridge, Billy
  last_name: Aldridge
- first_name: Martin
  full_name: Vickers, Martin
  last_name: Vickers
- first_name: James D.
  full_name: Higgins, James D.
  last_name: Higgins
- first_name: Xiaoqi
  full_name: Feng, Xiaoqi
  id: e0164712-22ee-11ed-b12a-d80fcdf35958
  last_name: Feng
  orcid: 0000-0002-4008-1234
citation:
  ama: Walker J, Gao H, Zhang J, et al. Sexual-lineage-specific DNA methylation regulates
    meiosis in Arabidopsis. <i>Nature Genetics</i>. 2017;50(1):130-137. doi:<a href="https://doi.org/10.1038/s41588-017-0008-5">10.1038/s41588-017-0008-5</a>
  apa: Walker, J., Gao, H., Zhang, J., Aldridge, B., Vickers, M., Higgins, J. D.,
    &#38; Feng, X. (2017). Sexual-lineage-specific DNA methylation regulates meiosis
    in Arabidopsis. <i>Nature Genetics</i>. Nature Research. <a href="https://doi.org/10.1038/s41588-017-0008-5">https://doi.org/10.1038/s41588-017-0008-5</a>
  chicago: Walker, James, Hongbo Gao, Jingyi Zhang, Billy Aldridge, Martin Vickers,
    James D. Higgins, and Xiaoqi Feng. “Sexual-Lineage-Specific DNA Methylation Regulates
    Meiosis in Arabidopsis.” <i>Nature Genetics</i>. Nature Research, 2017. <a href="https://doi.org/10.1038/s41588-017-0008-5">https://doi.org/10.1038/s41588-017-0008-5</a>.
  ieee: J. Walker <i>et al.</i>, “Sexual-lineage-specific DNA methylation regulates
    meiosis in Arabidopsis,” <i>Nature Genetics</i>, vol. 50, no. 1. Nature Research,
    pp. 130–137, 2017.
  ista: Walker J, Gao H, Zhang J, Aldridge B, Vickers M, Higgins JD, Feng X. 2017.
    Sexual-lineage-specific DNA methylation regulates meiosis in Arabidopsis. Nature
    Genetics. 50(1), 130–137.
  mla: Walker, James, et al. “Sexual-Lineage-Specific DNA Methylation Regulates Meiosis
    in Arabidopsis.” <i>Nature Genetics</i>, vol. 50, no. 1, Nature Research, 2017,
    pp. 130–37, doi:<a href="https://doi.org/10.1038/s41588-017-0008-5">10.1038/s41588-017-0008-5</a>.
  short: J. Walker, H. Gao, J. Zhang, B. Aldridge, M. Vickers, J.D. Higgins, X. Feng,
    Nature Genetics 50 (2017) 130–137.
date_created: 2023-01-16T09:18:05Z
date_published: 2017-12-18T00:00:00Z
date_updated: 2026-03-19T10:51:18Z
day: '18'
department:
- _id: XiFe
doi: 10.1038/s41588-017-0008-5
extern: '1'
external_id:
  pmid:
  - '29255257'
intvolume: '        50'
issue: '1'
keyword:
- Genetics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7611288/
month: '12'
oa: 1
oa_version: Submitted Version
page: 130-137
pmid: 1
publication: Nature Genetics
publication_identifier:
  eissn:
  - 1546-1718
  issn:
  - 1061-4036
publication_status: published
publisher: Nature Research
quality_controlled: '1'
scopus_import: '1'
status: public
title: Sexual-lineage-specific DNA methylation regulates meiosis in Arabidopsis
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 50
year: '2017'
...
