---
OA_place: repository
OA_type: green
_id: '1320'
abstract:
- lang: eng
  text: 'In recent years, several biomolecular systems have been shown to be scale-invariant
    (SI), i.e. to show the same output dynamics when exposed to geometrically scaled
    input signals (u → pu, p &gt; 0) after pre-adaptation to accordingly scaled constant
    inputs. In this article, we show that SI systems-as well as systems invariant
    with respect to other input transformations-can realize nonlinear differential
    operators: when excited by inputs obeying functional forms characteristic for
    a given class of invariant systems, the systems'' outputs converge to constant
    values directly quantifying the speed of the input.'
acknowledgement: The research leading to these results has received funding from the
  People Programme (Marie Curie Actions) of the European Union's Seventh Framework
  Programme (FP7/2007-2013) under REA grant agreement n° [291734]. Work supported
  in part by grants AFOSR FA9550-14-1-0060 and NIH 1R01GM100473.
article_number: '7526722'
article_processing_charge: No
author:
- first_name: Moritz
  full_name: Lang, Moritz
  id: 29E0800A-F248-11E8-B48F-1D18A9856A87
  last_name: Lang
- first_name: Eduardo
  full_name: Sontag, Eduardo
  last_name: Sontag
citation:
  ama: 'Lang M, Sontag E. Scale-invariant systems realize nonlinear differential operators.
    In: Vol 2016-July. IEEE; 2016. doi:<a href="https://doi.org/10.1109/ACC.2016.7526722">10.1109/ACC.2016.7526722</a>'
  apa: 'Lang, M., &#38; Sontag, E. (2016). Scale-invariant systems realize nonlinear
    differential operators (Vol. 2016–July). Presented at the ACC: American Control
    Conference, Boston, MA, USA: IEEE. <a href="https://doi.org/10.1109/ACC.2016.7526722">https://doi.org/10.1109/ACC.2016.7526722</a>'
  chicago: Lang, Moritz, and Eduardo Sontag. “Scale-Invariant Systems Realize Nonlinear
    Differential Operators,” Vol. 2016–July. IEEE, 2016. <a href="https://doi.org/10.1109/ACC.2016.7526722">https://doi.org/10.1109/ACC.2016.7526722</a>.
  ieee: 'M. Lang and E. Sontag, “Scale-invariant systems realize nonlinear differential
    operators,” presented at the ACC: American Control Conference, Boston, MA, USA,
    2016, vol. 2016–July.'
  ista: 'Lang M, Sontag E. 2016. Scale-invariant systems realize nonlinear differential
    operators. ACC: American Control Conference vol. 2016–July, 7526722.'
  mla: Lang, Moritz, and Eduardo Sontag. <i>Scale-Invariant Systems Realize Nonlinear
    Differential Operators</i>. Vol. 2016–July, 7526722, IEEE, 2016, doi:<a href="https://doi.org/10.1109/ACC.2016.7526722">10.1109/ACC.2016.7526722</a>.
  short: M. Lang, E. Sontag, in:, IEEE, 2016.
conference:
  end_date: 2016-07-08
  location: Boston, MA, USA
  name: 'ACC: American Control Conference'
  start_date: 2016-07-06
date_created: 2018-12-11T11:51:21Z
date_published: 2016-07-28T00:00:00Z
date_updated: 2025-06-25T11:46:37Z
day: '28'
ddc:
- '003'
- '621'
department:
- _id: CaGu
- _id: GaTk
doi: 10.1109/ACC.2016.7526722
ec_funded: 1
file:
- access_level: open_access
  checksum: 7219432b43defc62a0d45f48d4ce6a19
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:16:17Z
  date_updated: 2025-06-25T11:46:36Z
  file_id: '5203'
  file_name: IST-2017-810-v1+1_root.pdf
  file_size: 539166
  relation: main_file
file_date_updated: 2025-06-25T11:46:36Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Submitted Version
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication_status: published
publisher: IEEE
publist_id: '5950'
pubrep_id: '810'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Scale-invariant systems realize nonlinear differential operators
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2016-July
year: '2016'
...
---
_id: '1322'
abstract:
- lang: eng
  text: Direct reciprocity is a major mechanism for the evolution of cooperation.
    Several classical studies have suggested that humans should quickly learn to adopt
    reciprocal strategies to establish mutual cooperation in repeated interactions.
    On the other hand, the recently discovered theory of ZD strategies has found that
    subjects who use extortionate strategies are able to exploit and subdue cooperators.
    Although such extortioners have been predicted to succeed in any population of
    adaptive opponents, theoretical follow-up studies questioned whether extortion
    can evolve in reality. However, most of these studies presumed that individuals
    have similar strategic possibilities and comparable outside options, whereas asymmetries
    are ubiquitous in real world applications. Here we show with a model and an economic
    experiment that extortionate strategies readily emerge once subjects differ in
    their strategic power. Our experiment combines a repeated social dilemma with
    asymmetric partner choice. In our main treatment there is one randomly chosen
    group member who is unilaterally allowed to exchange one of the other group members
    after every ten rounds of the social dilemma. We find that this asymmetric replacement
    opportunity generally promotes cooperation, but often the resulting payoff distribution
    reflects the underlying power structure. Almost half of the subjects in a better
    strategic position turn into extortioners, who quickly proceed to exploit their
    peers. By adapting their cooperation probabilities consistent with ZD theory,
    extortioners force their co-players to cooperate without being similarly cooperative
    themselves. Comparison to non-extortionate players under the same conditions indicates
    a substantial net gain to extortion. Our results thus highlight how power asymmetries
    can endanger mutually beneficial interactions, and transform them into exploitative
    relationships. In particular, our results indicate that the extortionate strategies
    predicted from ZD theory could play a more prominent role in our daily interactions
    than previously thought.
acknowledgement: 'CH was funded by the Schrödinger program of the Austrian Science
  Fund (FWF) J3475. '
article_number: e0163867
article_processing_charge: No
author:
- first_name: Christian
  full_name: Hilbe, Christian
  id: 2FDF8F3C-F248-11E8-B48F-1D18A9856A87
  last_name: Hilbe
  orcid: 0000-0001-5116-955X
- first_name: Kristin
  full_name: Hagel, Kristin
  last_name: Hagel
- first_name: Manfred
  full_name: Milinski, Manfred
  last_name: Milinski
citation:
  ama: Hilbe C, Hagel K, Milinski M. Asymmetric power boosts extortion in an economic
    experiment. <i>PLoS One</i>. 2016;11(10). doi:<a href="https://doi.org/10.1371/journal.pone.0163867">10.1371/journal.pone.0163867</a>
  apa: Hilbe, C., Hagel, K., &#38; Milinski, M. (2016). Asymmetric power boosts extortion
    in an economic experiment. <i>PLoS One</i>. Public Library of Science. <a href="https://doi.org/10.1371/journal.pone.0163867">https://doi.org/10.1371/journal.pone.0163867</a>
  chicago: Hilbe, Christian, Kristin Hagel, and Manfred Milinski. “Asymmetric Power
    Boosts Extortion in an Economic Experiment.” <i>PLoS One</i>. Public Library of
    Science, 2016. <a href="https://doi.org/10.1371/journal.pone.0163867">https://doi.org/10.1371/journal.pone.0163867</a>.
  ieee: C. Hilbe, K. Hagel, and M. Milinski, “Asymmetric power boosts extortion in
    an economic experiment,” <i>PLoS One</i>, vol. 11, no. 10. Public Library of Science,
    2016.
  ista: Hilbe C, Hagel K, Milinski M. 2016. Asymmetric power boosts extortion in an
    economic experiment. PLoS One. 11(10), e0163867.
  mla: Hilbe, Christian, et al. “Asymmetric Power Boosts Extortion in an Economic
    Experiment.” <i>PLoS One</i>, vol. 11, no. 10, e0163867, Public Library of Science,
    2016, doi:<a href="https://doi.org/10.1371/journal.pone.0163867">10.1371/journal.pone.0163867</a>.
  short: C. Hilbe, K. Hagel, M. Milinski, PLoS One 11 (2016).
corr_author: '1'
date_created: 2018-12-11T11:51:22Z
date_published: 2016-10-04T00:00:00Z
date_updated: 2025-09-22T08:27:01Z
day: '04'
ddc:
- '004'
- '006'
department:
- _id: KrCh
doi: 10.1371/journal.pone.0163867
external_id:
  isi:
  - '000385696900024'
file:
- access_level: open_access
  checksum: 6b33e394003dfe8b4ca6be1858aaa8e3
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:08:08Z
  date_updated: 2020-07-14T12:44:44Z
  file_id: '4668'
  file_name: IST-2016-716-v1+1_journal.pone.0163867.PDF
  file_size: 2077905
  relation: main_file
file_date_updated: 2020-07-14T12:44:44Z
has_accepted_license: '1'
intvolume: '        11'
isi: 1
issue: '10'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
publication: PLoS One
publication_status: published
publisher: Public Library of Science
publist_id: '5948'
pubrep_id: '716'
quality_controlled: '1'
related_material:
  record:
  - id: '9867'
    relation: research_data
    status: public
  - id: '9868'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: Asymmetric power boosts extortion in an economic experiment
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 11
year: '2016'
...
---
_id: '1323'
abstract:
- lang: eng
  text: Mossy fiber synapses on CA3 pyramidal cells are 'conditional detonators' that
    reliably discharge postsynaptic targets. The 'conditional' nature implies that
    burst activity in dentate gyrus granule cells is required for detonation. Whether
    single unitary excitatory postsynaptic potentials (EPSPs) trigger spikes in CA3
    neurons remains unknown. Mossy fiber synapses exhibit both pronounced short-term
    facilitation and uniquely large post-tetanic potentiation (PTP). We tested whether
    PTP could convert mossy fiber synapses from subdetonator into detonator mode,
    using a recently developed method to selectively and noninvasively stimulate individual
    presynaptic terminals in rat brain slices. Unitary EPSPs failed to initiate a
    spike in CA3 neurons under control conditions, but reliably discharged them after
    induction of presynaptic short-term plasticity. Remarkably, PTP switched mossy
    fiber synapses into full detonators for tens of seconds. Plasticity-dependent
    detonation may be critical for efficient coding, storage, and recall of information
    in the granule cell–CA3 cell network.
acknowledged_ssus:
- _id: M-Shop
- _id: PreCl
article_number: e17977
article_processing_charge: No
author:
- first_name: Nicholas
  full_name: Vyleta, Nicholas
  id: 36C4978E-F248-11E8-B48F-1D18A9856A87
  last_name: Vyleta
- first_name: Carolina
  full_name: Borges Merjane, Carolina
  id: 4305C450-F248-11E8-B48F-1D18A9856A87
  last_name: Borges Merjane
  orcid: 0000-0003-0005-401X
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
citation:
  ama: Vyleta N, Borges Merjane C, Jonas PM. Plasticity-dependent, full detonation
    at hippocampal mossy fiber–CA3 pyramidal neuron synapses. <i>eLife</i>. 2016;5.
    doi:<a href="https://doi.org/10.7554/eLife.17977">10.7554/eLife.17977</a>
  apa: Vyleta, N., Borges Merjane, C., &#38; Jonas, P. M. (2016). Plasticity-dependent,
    full detonation at hippocampal mossy fiber–CA3 pyramidal neuron synapses. <i>ELife</i>.
    eLife Sciences Publications. <a href="https://doi.org/10.7554/eLife.17977">https://doi.org/10.7554/eLife.17977</a>
  chicago: Vyleta, Nicholas, Carolina Borges Merjane, and Peter M Jonas. “Plasticity-Dependent,
    Full Detonation at Hippocampal Mossy Fiber–CA3 Pyramidal Neuron Synapses.” <i>ELife</i>.
    eLife Sciences Publications, 2016. <a href="https://doi.org/10.7554/eLife.17977">https://doi.org/10.7554/eLife.17977</a>.
  ieee: N. Vyleta, C. Borges Merjane, and P. M. Jonas, “Plasticity-dependent, full
    detonation at hippocampal mossy fiber–CA3 pyramidal neuron synapses,” <i>eLife</i>,
    vol. 5. eLife Sciences Publications, 2016.
  ista: Vyleta N, Borges Merjane C, Jonas PM. 2016. Plasticity-dependent, full detonation
    at hippocampal mossy fiber–CA3 pyramidal neuron synapses. eLife. 5, e17977.
  mla: Vyleta, Nicholas, et al. “Plasticity-Dependent, Full Detonation at Hippocampal
    Mossy Fiber–CA3 Pyramidal Neuron Synapses.” <i>ELife</i>, vol. 5, e17977, eLife
    Sciences Publications, 2016, doi:<a href="https://doi.org/10.7554/eLife.17977">10.7554/eLife.17977</a>.
  short: N. Vyleta, C. Borges Merjane, P.M. Jonas, ELife 5 (2016).
corr_author: '1'
date_created: 2018-12-11T11:51:22Z
date_published: 2016-10-25T00:00:00Z
date_updated: 2025-09-22T08:26:29Z
day: '25'
ddc:
- '571'
- '572'
department:
- _id: PeJo
doi: 10.7554/eLife.17977
ec_funded: 1
external_id:
  isi:
  - '000387034600001'
file:
- access_level: open_access
  checksum: a7201280c571bed88ebd459ce5ce6a47
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:17:05Z
  date_updated: 2020-07-14T12:44:44Z
  file_id: '5257'
  file_name: IST-2016-715-v1+1_e17977-download.pdf
  file_size: 1477891
  relation: main_file
file_date_updated: 2020-07-14T12:44:44Z
has_accepted_license: '1'
intvolume: '         5'
isi: 1
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
project:
- _id: 25C0F108-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '268548'
  name: Nanophysiology of fast-spiking, parvalbumin-expressing GABAergic interneurons
- _id: 25B7EB9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '692692'
  name: Biophysics and circuit function of a giant cortical glutamatergic synapse
publication: eLife
publication_status: published
publisher: eLife Sciences Publications
publist_id: '5947'
pubrep_id: '715'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Plasticity-dependent, full detonation at hippocampal mossy fiber–CA3 pyramidal
  neuron synapses
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 5
year: '2016'
...
---
_id: '1324'
abstract:
- lang: eng
  text: 'DEC-POMDPs extend POMDPs to a multi-agent setting, where several agents operate
    in an uncertain environment independently to achieve a joint objective. DEC-POMDPs
    have been studied with finite-horizon and infinite-horizon discounted-sum objectives,
    and there exist solvers both for exact and approximate solutions. In this work
    we consider Goal-DEC-POMDPs, where given a set of target states, the objective
    is to ensure that the target set is reached with minimal cost. We consider the
    indefinite-horizon (infinite-horizon with either discounted-sum, or undiscounted-sum,
    where absorbing goal states have zero-cost) problem. We present a new and novel
    method to solve the problem that extends methods for finite-horizon DEC-POMDPs
    and the RTDP-Bel approach for POMDPs. We present experimental results on several
    examples, and show that our approach presents promising results. Copyright '
article_processing_charge: No
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Martin
  full_name: Chmelik, Martin
  id: 3624234E-F248-11E8-B48F-1D18A9856A87
  last_name: Chmelik
citation:
  ama: 'Chatterjee K, Chmelik M. Indefinite-horizon reachability in Goal-DEC-POMDPs.
    In: <i>Proceedings of the Twenty-Sixth International Conference on Automated Planning
    and Scheduling</i>. Vol 2016. AAAI Press; 2016:88-96. doi:<a href="https://doi.org/10.1609/icaps.v26i1.13737">10.1609/icaps.v26i1.13737</a>'
  apa: 'Chatterjee, K., &#38; Chmelik, M. (2016). Indefinite-horizon reachability
    in Goal-DEC-POMDPs. In <i>Proceedings of the Twenty-Sixth International Conference
    on Automated Planning and Scheduling</i> (Vol. 2016, pp. 88–96). London, United
    Kingdom: AAAI Press. <a href="https://doi.org/10.1609/icaps.v26i1.13737">https://doi.org/10.1609/icaps.v26i1.13737</a>'
  chicago: Chatterjee, Krishnendu, and Martin Chmelik. “Indefinite-Horizon Reachability
    in Goal-DEC-POMDPs.” In <i>Proceedings of the Twenty-Sixth International Conference
    on Automated Planning and Scheduling</i>, 2016:88–96. AAAI Press, 2016. <a href="https://doi.org/10.1609/icaps.v26i1.13737">https://doi.org/10.1609/icaps.v26i1.13737</a>.
  ieee: K. Chatterjee and M. Chmelik, “Indefinite-horizon reachability in Goal-DEC-POMDPs,”
    in <i>Proceedings of the Twenty-Sixth International Conference on Automated Planning
    and Scheduling</i>, London, United Kingdom, 2016, vol. 2016, pp. 88–96.
  ista: 'Chatterjee K, Chmelik M. 2016. Indefinite-horizon reachability in Goal-DEC-POMDPs.
    Proceedings of the Twenty-Sixth International Conference on Automated Planning
    and Scheduling. ICAPS: International Conference on Automated Planning and Scheduling
    vol. 2016, 88–96.'
  mla: Chatterjee, Krishnendu, and Martin Chmelik. “Indefinite-Horizon Reachability
    in Goal-DEC-POMDPs.” <i>Proceedings of the Twenty-Sixth International Conference
    on Automated Planning and Scheduling</i>, vol. 2016, AAAI Press, 2016, pp. 88–96,
    doi:<a href="https://doi.org/10.1609/icaps.v26i1.13737">10.1609/icaps.v26i1.13737</a>.
  short: K. Chatterjee, M. Chmelik, in:, Proceedings of the Twenty-Sixth International
    Conference on Automated Planning and Scheduling, AAAI Press, 2016, pp. 88–96.
conference:
  end_date: 2016-06-17
  location: London, United Kingdom
  name: 'ICAPS: International Conference on Automated Planning and Scheduling'
  start_date: 2016-06-12
corr_author: '1'
date_created: 2018-12-11T11:51:22Z
date_published: 2016-01-01T00:00:00Z
date_updated: 2025-05-19T11:03:49Z
day: '01'
department:
- _id: KrCh
doi: 10.1609/icaps.v26i1.13737
ec_funded: 1
intvolume: '      2016'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.aaai.org/ocs/index.php/ICAPS/ICAPS16/paper/view/12999
month: '01'
oa: 1
oa_version: None
page: 88 - 96
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
publication: Proceedings of the Twenty-Sixth International Conference on Automated
  Planning and Scheduling
publication_status: published
publisher: AAAI Press
publist_id: '5946'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Indefinite-horizon reachability in Goal-DEC-POMDPs
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2016
year: '2016'
...
---
_id: '1325'
abstract:
- lang: eng
  text: We study graphs and two-player games in which rewards are assigned to states,
    and the goal of the players is to satisfy or dissatisfy certain property of the
    generated outcome, given as a mean payoff property. Since the notion of mean-payoff
    does not reflect possible fluctuations from the mean-payoff along a run, we propose
    definitions and algorithms for capturing the stability of the system, and give
    algorithms for deciding if a given mean payoff and stability objective can be
    ensured in the system.
acknowledgement: "The work has been supported by the Czech Science Foundation, grant
  No. 15-17564S, by EPSRC grant\r\nEP/M023656/1, and by the People Programme (Marie
  Curie Actions) of the European Union’s Seventh\r\nFramework Programme (FP7/2007-2013)
  under REA grant agreement no [291734]"
alternative_title:
- LIPIcs
article_number: '10'
author:
- first_name: Tomáš
  full_name: Brázdil, Tomáš
  last_name: Brázdil
- first_name: Vojtěch
  full_name: Forejt, Vojtěch
  last_name: Forejt
- first_name: Antonín
  full_name: Kučera, Antonín
  last_name: Kučera
- first_name: Petr
  full_name: Novotny, Petr
  id: 3CC3B868-F248-11E8-B48F-1D18A9856A87
  last_name: Novotny
citation:
  ama: 'Brázdil T, Forejt V, Kučera A, Novotný P. Stability in graphs and games. In:
    Vol 59. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2016. doi:<a href="https://doi.org/10.4230/LIPIcs.CONCUR.2016.10">10.4230/LIPIcs.CONCUR.2016.10</a>'
  apa: 'Brázdil, T., Forejt, V., Kučera, A., &#38; Novotný, P. (2016). Stability in
    graphs and games (Vol. 59). Presented at the CONCUR: Concurrency Theory, Quebec
    City, Canada: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.4230/LIPIcs.CONCUR.2016.10">https://doi.org/10.4230/LIPIcs.CONCUR.2016.10</a>'
  chicago: Brázdil, Tomáš, Vojtěch Forejt, Antonín Kučera, and Petr Novotný. “Stability
    in Graphs and Games,” Vol. 59. Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
    2016. <a href="https://doi.org/10.4230/LIPIcs.CONCUR.2016.10">https://doi.org/10.4230/LIPIcs.CONCUR.2016.10</a>.
  ieee: 'T. Brázdil, V. Forejt, A. Kučera, and P. Novotný, “Stability in graphs and
    games,” presented at the CONCUR: Concurrency Theory, Quebec City, Canada, 2016,
    vol. 59.'
  ista: 'Brázdil T, Forejt V, Kučera A, Novotný P. 2016. Stability in graphs and games.
    CONCUR: Concurrency Theory, LIPIcs, vol. 59, 10.'
  mla: Brázdil, Tomáš, et al. <i>Stability in Graphs and Games</i>. Vol. 59, 10, Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik, 2016, doi:<a href="https://doi.org/10.4230/LIPIcs.CONCUR.2016.10">10.4230/LIPIcs.CONCUR.2016.10</a>.
  short: T. Brázdil, V. Forejt, A. Kučera, P. Novotný, in:, Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, 2016.
conference:
  end_date: 2016-08-26
  location: Quebec City, Canada
  name: 'CONCUR: Concurrency Theory'
  start_date: 2016-08-23
corr_author: '1'
date_created: 2018-12-11T11:51:23Z
date_published: 2016-08-01T00:00:00Z
date_updated: 2024-10-09T20:57:03Z
day: '01'
ddc:
- '004'
department:
- _id: KrCh
doi: 10.4230/LIPIcs.CONCUR.2016.10
ec_funded: 1
file:
- access_level: open_access
  checksum: 3c2dc6ab0358f8aa8f7aa7d6c1293159
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:16:40Z
  date_updated: 2020-07-14T12:44:44Z
  file_id: '5229'
  file_name: IST-2016-665-v1+1_Forejt_et_al__Stability_in_graphs_and_games.pdf
  file_size: 553648
  relation: main_file
file_date_updated: 2020-07-14T12:44:44Z
has_accepted_license: '1'
intvolume: '        59'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '5944'
pubrep_id: '665'
quality_controlled: '1'
scopus_import: 1
status: public
title: Stability in graphs and games
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 59
year: '2016'
...
---
_id: '1326'
abstract:
- lang: eng
  text: 'Energy Markov Decision Processes (EMDPs) are finite-state Markov decision
    processes where each transition is assigned an integer counter update and a rational
    payoff. An EMDP configuration is a pair s(n), where s is a control state and n
    is the current counter value. The configurations are changed by performing transitions
    in the standard way. We consider the problem of computing a safe strategy (i.e.,
    a strategy that keeps the counter non-negative) which maximizes the expected mean
    payoff. '
acknowledgement: The research was funded by the Czech Science Foundation Grant No.
  P202/12/G061 and by the People Programme (Marie Curie Actions) of the European Union’s
  Seventh Framework Programme (FP7/2007-2013) under REA grant agreement no [291734].
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Tomáš
  full_name: Brázdil, Tomáš
  last_name: Brázdil
- first_name: Antonín
  full_name: Kučera, Antonín
  last_name: Kučera
- first_name: Petr
  full_name: Novotny, Petr
  id: 3CC3B868-F248-11E8-B48F-1D18A9856A87
  last_name: Novotny
citation:
  ama: 'Brázdil T, Kučera A, Novotný P. Optimizing the expected mean payoff in Energy
    Markov Decision Processes. In: Vol 9938. Springer; 2016:32-49. doi:<a href="https://doi.org/10.1007/978-3-319-46520-3_3">10.1007/978-3-319-46520-3_3</a>'
  apa: 'Brázdil, T., Kučera, A., &#38; Novotný, P. (2016). Optimizing the expected
    mean payoff in Energy Markov Decision Processes (Vol. 9938, pp. 32–49). Presented
    at the ATVA: Automated Technology for Verification and Analysis, Chiba, Japan:
    Springer. <a href="https://doi.org/10.1007/978-3-319-46520-3_3">https://doi.org/10.1007/978-3-319-46520-3_3</a>'
  chicago: Brázdil, Tomáš, Antonín Kučera, and Petr Novotný. “Optimizing the Expected
    Mean Payoff in Energy Markov Decision Processes,” 9938:32–49. Springer, 2016.
    <a href="https://doi.org/10.1007/978-3-319-46520-3_3">https://doi.org/10.1007/978-3-319-46520-3_3</a>.
  ieee: 'T. Brázdil, A. Kučera, and P. Novotný, “Optimizing the expected mean payoff
    in Energy Markov Decision Processes,” presented at the ATVA: Automated Technology
    for Verification and Analysis, Chiba, Japan, 2016, vol. 9938, pp. 32–49.'
  ista: 'Brázdil T, Kučera A, Novotný P. 2016. Optimizing the expected mean payoff
    in Energy Markov Decision Processes. ATVA: Automated Technology for Verification
    and Analysis, LNCS, vol. 9938, 32–49.'
  mla: Brázdil, Tomáš, et al. <i>Optimizing the Expected Mean Payoff in Energy Markov
    Decision Processes</i>. Vol. 9938, Springer, 2016, pp. 32–49, doi:<a href="https://doi.org/10.1007/978-3-319-46520-3_3">10.1007/978-3-319-46520-3_3</a>.
  short: T. Brázdil, A. Kučera, P. Novotný, in:, Springer, 2016, pp. 32–49.
conference:
  end_date: 2016-10-20
  location: Chiba, Japan
  name: 'ATVA: Automated Technology for Verification and Analysis'
  start_date: 2016-10-17
corr_author: '1'
date_created: 2018-12-11T11:51:23Z
date_published: 2016-09-22T00:00:00Z
date_updated: 2025-09-22T08:25:26Z
day: '22'
department:
- _id: KrCh
doi: 10.1007/978-3-319-46520-3_3
ec_funded: 1
external_id:
  arxiv:
  - '1607.00678'
  isi:
  - '000389808100003'
intvolume: '      9938'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1607.00678
month: '09'
oa: 1
oa_version: Preprint
page: 32 - 49
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication_status: published
publisher: Springer
publist_id: '5943'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Optimizing the expected mean payoff in Energy Markov Decision Processes
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 9938
year: '2016'
...
---
_id: '1327'
abstract:
- lang: eng
  text: 'We consider partially observable Markov decision processes (POMDPs) with
    a set of target states and positive integer costs associated with every transition.
    The traditional optimization objective (stochastic shortest path) asks to minimize
    the expected total cost until the target set is reached. We extend the traditional
    framework of POMDPs to model energy consumption, which represents a hard constraint.
    The energy levels may increase and decrease with transitions, and the hard constraint
    requires that the energy level must remain positive in all steps till the target
    is reached. First, we present a novel algorithm for solving POMDPs with energy
    levels, developing on existing POMDP solvers and using RTDP as its main method.
    Our second contribution is related to policy representation. For larger POMDP
    instances the policies computed by existing solvers are too large to be understandable.
    We present an automated procedure based on machine learning techniques that automatically
    extracts important decisions of the policy allowing us to compute succinct human
    readable policies. Finally, we show experimentally that our algorithm performs
    well and computes succinct policies on a number of POMDP instances from the literature
    that were naturally enhanced with energy levels. '
article_processing_charge: No
arxiv: 1
author:
- first_name: Tomáš
  full_name: Brázdil, Tomáš
  last_name: Brázdil
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Martin
  full_name: Chmelik, Martin
  id: 3624234E-F248-11E8-B48F-1D18A9856A87
  last_name: Chmelik
- first_name: Anchit
  full_name: Gupta, Anchit
  last_name: Gupta
- first_name: Petr
  full_name: Novotny, Petr
  id: 3CC3B868-F248-11E8-B48F-1D18A9856A87
  last_name: Novotny
citation:
  ama: 'Brázdil T, Chatterjee K, Chmelik M, Gupta A, Novotný P. Stochastic shortest
    path with energy constraints in POMDPs. In: <i>Proceedings of the 15th International
    Conference on Autonomous Agents and Multiagent Systems</i>. ACM; 2016:1465-1466.'
  apa: 'Brázdil, T., Chatterjee, K., Chmelik, M., Gupta, A., &#38; Novotný, P. (2016).
    Stochastic shortest path with energy constraints in POMDPs. In <i>Proceedings
    of the 15th International Conference on Autonomous Agents and Multiagent Systems</i>
    (pp. 1465–1466). Singapore: ACM.'
  chicago: Brázdil, Tomáš, Krishnendu Chatterjee, Martin Chmelik, Anchit Gupta, and
    Petr Novotný. “Stochastic Shortest Path with Energy Constraints in POMDPs.” In
    <i>Proceedings of the 15th International Conference on Autonomous Agents and Multiagent
    Systems</i>, 1465–66. ACM, 2016.
  ieee: T. Brázdil, K. Chatterjee, M. Chmelik, A. Gupta, and P. Novotný, “Stochastic
    shortest path with energy constraints in POMDPs,” in <i>Proceedings of the 15th
    International Conference on Autonomous Agents and Multiagent Systems</i>, Singapore,
    2016, pp. 1465–1466.
  ista: 'Brázdil T, Chatterjee K, Chmelik M, Gupta A, Novotný P. 2016. Stochastic
    shortest path with energy constraints in POMDPs. Proceedings of the 15th International
    Conference on Autonomous Agents and Multiagent Systems. AAMAS: Autonomous Agents
    &#38; Multiagent Systems, 1465–1466.'
  mla: Brázdil, Tomáš, et al. “Stochastic Shortest Path with Energy Constraints in
    POMDPs.” <i>Proceedings of the 15th International Conference on Autonomous Agents
    and Multiagent Systems</i>, ACM, 2016, pp. 1465–66.
  short: T. Brázdil, K. Chatterjee, M. Chmelik, A. Gupta, P. Novotný, in:, Proceedings
    of the 15th International Conference on Autonomous Agents and Multiagent Systems,
    ACM, 2016, pp. 1465–1466.
conference:
  end_date: 2016-05-13
  location: Singapore
  name: 'AAMAS: Autonomous Agents & Multiagent Systems'
  start_date: 2016-05-09
date_created: 2018-12-11T11:51:23Z
date_published: 2016-01-01T00:00:00Z
date_updated: 2025-06-04T10:26:23Z
day: '01'
department:
- _id: KrCh
ec_funded: 1
external_id:
  arxiv:
  - '1602.07565'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1602.07565
month: '01'
oa: 1
oa_version: Preprint
page: 1465 - 1466
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
publication: Proceedings of the 15th International Conference on Autonomous Agents
  and Multiagent Systems
publication_status: published
publisher: ACM
publist_id: '5942'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Stochastic shortest path with energy constraints in POMDPs
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '1329'
abstract:
- lang: eng
  text: Daphnia species have become models for ecological genomics and exhibit interesting
    features, such as high phenotypic plasticity and a densely packed genome with
    many lineage-specific genes. They are also cyclic parthenogenetic, with alternating
    asexual and sexual cycles and environmental sex determination. Here, we present
    a de novo transcriptome assembly of over 32,000 D. galeata genes and use it to
    investigate gene expression in females and spontaneously produced males of two
    clonal lines derived from lakes in Germany and the Czech Republic. We find that
    only a low percentage (18%) of genes shows sex-biased expression and that there
    are many more female-biased gene (FBG) than male-biased gene (MBG). Furthermore,
    FBGs tend to be more conserved between species than MBGs in both sequence and
    expression. These patterns may be a consequence of cyclic parthenogenesis leading
    to a relaxation of purifying selection on MBGs. The two clonal lines show considerable
    differences in both number and identity of sex-biased genes, suggesting that they
    may have reproductive strategies differing in their investment in sexual reproduction.
    Orthologs of key genes in the sex determination and juvenile hormone pathways,
    which are thought to be important for the transition from asexual to sexual reproduction,
    are present in D. galeata and highly conserved among Daphnia species.
acknowledgement: This study was financially supported by individual grants from the
  Volkswagen Stiftung (to M.C.), the Deutsche Forschungsgemeinschaft (grant PA 903/6
  to J.P.) and the DAAD (to A.K.H.). The authors would like to thank I. Schrank, L.
  Theodosiou, M. Kredler, C. Laforsch, J. Wolinska, J. Griebel, R. Jaenichen, and
  K. Otte for providing the necessary resources and help for maintaining Daphnia cultures
  in the laboratory. H. Lainer supported us for the molecular laboratory work. D.
  Gilbert and J. K. Colbourne contributed ideas for the bioinformatics analysis, and
  L. Hardulak did the orthology mapping including more insect species. This study
  was financially supported by individual grants from the Volkswagen Stiftung (to
  M.C.), the Deutsche Forschungsgemeinschaft (grant PA 903/6 to J.P.) and the DAAD
  (to A.K.H.). This work benefits from and contributes to the Daphnia Genomics Consortium.
article_processing_charge: No
author:
- first_name: Ann K
  full_name: Huylmans, Ann K
  id: 4C0A3874-F248-11E8-B48F-1D18A9856A87
  last_name: Huylmans
  orcid: 0000-0001-8871-4961
- first_name: Alberto
  full_name: López Ezquerra, Alberto
  last_name: López Ezquerra
- first_name: John
  full_name: Parsch, John
  last_name: Parsch
- first_name: Mathilde
  full_name: Cordellier, Mathilde
  last_name: Cordellier
citation:
  ama: Huylmans AK, López Ezquerra A, Parsch J, Cordellier M. De novo transcriptome
    assembly and sex-biased gene expression in the cyclical parthenogenetic Daphnia
    galeata. <i>Genome Biology and Evolution</i>. 2016;8(10):3120-3139. doi:<a href="https://doi.org/10.1093/gbe/evw221">10.1093/gbe/evw221</a>
  apa: Huylmans, A. K., López Ezquerra, A., Parsch, J., &#38; Cordellier, M. (2016).
    De novo transcriptome assembly and sex-biased gene expression in the cyclical
    parthenogenetic Daphnia galeata. <i>Genome Biology and Evolution</i>. Oxford University
    Press. <a href="https://doi.org/10.1093/gbe/evw221">https://doi.org/10.1093/gbe/evw221</a>
  chicago: Huylmans, Ann K, Alberto López Ezquerra, John Parsch, and Mathilde Cordellier.
    “De Novo Transcriptome Assembly and Sex-Biased Gene Expression in the Cyclical
    Parthenogenetic Daphnia Galeata.” <i>Genome Biology and Evolution</i>. Oxford
    University Press, 2016. <a href="https://doi.org/10.1093/gbe/evw221">https://doi.org/10.1093/gbe/evw221</a>.
  ieee: A. K. Huylmans, A. López Ezquerra, J. Parsch, and M. Cordellier, “De novo
    transcriptome assembly and sex-biased gene expression in the cyclical parthenogenetic
    Daphnia galeata,” <i>Genome Biology and Evolution</i>, vol. 8, no. 10. Oxford
    University Press, pp. 3120–3139, 2016.
  ista: Huylmans AK, López Ezquerra A, Parsch J, Cordellier M. 2016. De novo transcriptome
    assembly and sex-biased gene expression in the cyclical parthenogenetic Daphnia
    galeata. Genome Biology and Evolution. 8(10), 3120–3139.
  mla: Huylmans, Ann K., et al. “De Novo Transcriptome Assembly and Sex-Biased Gene
    Expression in the Cyclical Parthenogenetic Daphnia Galeata.” <i>Genome Biology
    and Evolution</i>, vol. 8, no. 10, Oxford University Press, 2016, pp. 3120–39,
    doi:<a href="https://doi.org/10.1093/gbe/evw221">10.1093/gbe/evw221</a>.
  short: A.K. Huylmans, A. López Ezquerra, J. Parsch, M. Cordellier, Genome Biology
    and Evolution 8 (2016) 3120–3139.
date_created: 2018-12-11T11:51:24Z
date_published: 2016-10-01T00:00:00Z
date_updated: 2025-09-22T08:24:02Z
day: '01'
ddc:
- '576'
department:
- _id: BeVi
doi: 10.1093/gbe/evw221
external_id:
  isi:
  - '000386121300005'
file:
- access_level: open_access
  checksum: 25c7adcb452d39d3b6343ff4b57a652d
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:12:06Z
  date_updated: 2020-07-14T12:44:44Z
  file_id: '4924'
  file_name: IST-2016-663-v1+1_Genome_Biol_Evol-2016-Huylmans-3120-39.pdf
  file_size: 1406265
  relation: main_file
file_date_updated: 2020-07-14T12:44:44Z
has_accepted_license: '1'
intvolume: '         8'
isi: 1
issue: '10'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 3120 - 3139
publication: Genome Biology and Evolution
publication_status: published
publisher: Oxford University Press
publist_id: '5940'
pubrep_id: '663'
quality_controlled: '1'
scopus_import: '1'
status: public
title: De novo transcriptome assembly and sex-biased gene expression in the cyclical
  parthenogenetic Daphnia galeata
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 8
year: '2016'
...
---
_id: '1330'
abstract:
- lang: eng
  text: In this paper we investigate the existence of closed billiard trajectories
    in not necessarily smooth convex bodies. In particular, we show that if a body
    K ⊂ Rd has the property that the tangent cone of every non-smooth point q ∉ ∂K
    is acute (in a certain sense), then there is a closed billiard trajectory in K.
acknowledgement: Supported by People Programme (Marie Curie Actions) of the European
  Union’s Seventh Framework Programme (FP7/2007-2013) under REA grant agreement n°[291734].
  Supported by the Russian Foundation for Basic Research grant 15-31-20403 (mol a
  ved), by the Russian Foundation for Basic Research grant 15-01-99563 A, in part
  by the Moebius Contest Foundation for Young Scientists, and in part by the Simons
  Foundation.
article_processing_charge: No
arxiv: 1
author:
- first_name: Arseniy
  full_name: Akopyan, Arseniy
  id: 430D2C90-F248-11E8-B48F-1D18A9856A87
  last_name: Akopyan
  orcid: 0000-0002-2548-617X
- first_name: Alexey
  full_name: Balitskiy, Alexey
  last_name: Balitskiy
citation:
  ama: Akopyan A, Balitskiy A. Billiards in convex bodies with acute angles. <i>Israel
    Journal of Mathematics</i>. 2016;216(2):833-845. doi:<a href="https://doi.org/10.1007/s11856-016-1429-z">10.1007/s11856-016-1429-z</a>
  apa: Akopyan, A., &#38; Balitskiy, A. (2016). Billiards in convex bodies with acute
    angles. <i>Israel Journal of Mathematics</i>. Springer. <a href="https://doi.org/10.1007/s11856-016-1429-z">https://doi.org/10.1007/s11856-016-1429-z</a>
  chicago: Akopyan, Arseniy, and Alexey Balitskiy. “Billiards in Convex Bodies with
    Acute Angles.” <i>Israel Journal of Mathematics</i>. Springer, 2016. <a href="https://doi.org/10.1007/s11856-016-1429-z">https://doi.org/10.1007/s11856-016-1429-z</a>.
  ieee: A. Akopyan and A. Balitskiy, “Billiards in convex bodies with acute angles,”
    <i>Israel Journal of Mathematics</i>, vol. 216, no. 2. Springer, pp. 833–845,
    2016.
  ista: Akopyan A, Balitskiy A. 2016. Billiards in convex bodies with acute angles.
    Israel Journal of Mathematics. 216(2), 833–845.
  mla: Akopyan, Arseniy, and Alexey Balitskiy. “Billiards in Convex Bodies with Acute
    Angles.” <i>Israel Journal of Mathematics</i>, vol. 216, no. 2, Springer, 2016,
    pp. 833–45, doi:<a href="https://doi.org/10.1007/s11856-016-1429-z">10.1007/s11856-016-1429-z</a>.
  short: A. Akopyan, A. Balitskiy, Israel Journal of Mathematics 216 (2016) 833–845.
corr_author: '1'
date_created: 2018-12-11T11:51:24Z
date_published: 2016-10-15T00:00:00Z
date_updated: 2025-09-22T08:23:27Z
day: '15'
department:
- _id: HeEd
doi: 10.1007/s11856-016-1429-z
ec_funded: 1
external_id:
  arxiv:
  - '1506.06014'
  isi:
  - '000386356400012'
intvolume: '       216'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1506.06014
month: '10'
oa: 1
oa_version: Preprint
page: 833 - 845
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Israel Journal of Mathematics
publication_status: published
publisher: Springer
publist_id: '5938'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Billiards in convex bodies with acute angles
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 216
year: '2016'
...
---
_id: '1331'
abstract:
- lang: eng
  text: 'Cytokinin is a phytohormone that is well known for its roles in numerous
    plant growth and developmental processes, yet it has also been linked to abiotic
    stress response in a less defined manner. Arabidopsis (Arabidopsis thaliana) Cytokinin
    Response Factor 6 (CRF6) is a cytokinin-responsive AP2/ERF-family transcription
    factor that, through the cytokinin signaling pathway, plays a key role in the
    inhibition of dark-induced senescence. CRF6 expression is also induced by oxidative
    stress, and here we show a novel function for CRF6 in relation to oxidative stress
    and identify downstream transcriptional targets of CRF6 that are repressed in
    response to oxidative stress. Analysis of transcriptomic changes in wild-type
    and crf6 mutant plants treated with H2O2 identified CRF6-dependent differentially
    expressed transcripts, many of which were repressed rather than induced. Moreover,
    many repressed genes also show decreased expression in 35S:CRF6 overexpressing
    plants. Together, these findings suggest that CRF6 functions largely as a transcriptional
    repressor. Interestingly, among the H2O2 repressed CRF6-dependent transcripts
    was a set of five genes associated with cytokinin processes: (signaling) ARR6,
    ARR9, ARR11, (biosynthesis) LOG7, and (transport) ABCG14. We have examined mutants
    of these cytokinin-associated target genes to reveal novel connections to oxidative
    stress. Further examination of CRF6-DNA interactions indicated that CRF6 may regulate
    its targets both directly and indirectly. Together, this shows that CRF6 functions
    during oxidative stress as a negative regulator to control this cytokinin-associated
    module of CRF6- dependent genes and establishes a novel connection between cytokinin
    and oxidative stress response.'
acknowledgement: "This work was financially supported by the following: The Alabama
  Agricultural Experiment Station HATCH grants 370222-310010-2055 and 370225-310006-2055
  for funding to P.J.Z., E.A.K, A.M.P., and A.M.R. P.J.Z. and E.A.K were supported
  by an Auburn University Cellular and Molecular Biosciences Research Fellowship.
  I.D.C. is a postdoctoral fellow of the Research Foundation Flanders (FWO) (FWO/PDO14/043)
  and is also supported by FWO travel\r\ngrant 12N2415N. F.V.B. was supported by grants
  from the Interuniversity Attraction Poles Programme (IUAP P7/29 MARS) initiated
  by the Belgian Science Policy Office and Ghent University (Multidisciplinary Research
  Partnership Biotechnology for a Sustainable Economy, grant 01MRB510W)."
article_processing_charge: No
article_type: original
author:
- first_name: Paul
  full_name: Zwack, Paul
  last_name: Zwack
- first_name: Inge
  full_name: De Clercq, Inge
  last_name: De Clercq
- first_name: Timothy
  full_name: Howton, Timothy
  last_name: Howton
- first_name: H Tucker
  full_name: Hallmark, H Tucker
  last_name: Hallmark
- first_name: Andrej
  full_name: Hurny, Andrej
  id: 4DC4AF46-F248-11E8-B48F-1D18A9856A87
  last_name: Hurny
  orcid: 0000-0003-3638-1426
- first_name: Erika
  full_name: Keshishian, Erika
  last_name: Keshishian
- first_name: Alyssa
  full_name: Parish, Alyssa
  last_name: Parish
- first_name: Eva
  full_name: Benková, Eva
  id: 38F4F166-F248-11E8-B48F-1D18A9856A87
  last_name: Benková
  orcid: 0000-0002-8510-9739
- first_name: M Shahid
  full_name: Mukhtar, M Shahid
  last_name: Mukhtar
- first_name: Frank
  full_name: Van Breusegem, Frank
  last_name: Van Breusegem
- first_name: Aaron
  full_name: Rashotte, Aaron
  last_name: Rashotte
citation:
  ama: Zwack P, De Clercq I, Howton T, et al. Cytokinin response factor 6 represses
    cytokinin-associated genes during oxidative stress. <i>Plant Physiology</i>. 2016;172(2):1249-1258.
    doi:<a href="https://doi.org/10.1104/pp.16.00415">10.1104/pp.16.00415</a>
  apa: Zwack, P., De Clercq, I., Howton, T., Hallmark, H. T., Hurny, A., Keshishian,
    E., … Rashotte, A. (2016). Cytokinin response factor 6 represses cytokinin-associated
    genes during oxidative stress. <i>Plant Physiology</i>. American Society of Plant
    Biologists. <a href="https://doi.org/10.1104/pp.16.00415">https://doi.org/10.1104/pp.16.00415</a>
  chicago: Zwack, Paul, Inge De Clercq, Timothy Howton, H Tucker Hallmark, Andrej
    Hurny, Erika Keshishian, Alyssa Parish, et al. “Cytokinin Response Factor 6 Represses
    Cytokinin-Associated Genes during Oxidative Stress.” <i>Plant Physiology</i>.
    American Society of Plant Biologists, 2016. <a href="https://doi.org/10.1104/pp.16.00415">https://doi.org/10.1104/pp.16.00415</a>.
  ieee: P. Zwack <i>et al.</i>, “Cytokinin response factor 6 represses cytokinin-associated
    genes during oxidative stress,” <i>Plant Physiology</i>, vol. 172, no. 2. American
    Society of Plant Biologists, pp. 1249–1258, 2016.
  ista: Zwack P, De Clercq I, Howton T, Hallmark HT, Hurny A, Keshishian E, Parish
    A, Benková E, Mukhtar MS, Van Breusegem F, Rashotte A. 2016. Cytokinin response
    factor 6 represses cytokinin-associated genes during oxidative stress. Plant Physiology.
    172(2), 1249–1258.
  mla: Zwack, Paul, et al. “Cytokinin Response Factor 6 Represses Cytokinin-Associated
    Genes during Oxidative Stress.” <i>Plant Physiology</i>, vol. 172, no. 2, American
    Society of Plant Biologists, 2016, pp. 1249–58, doi:<a href="https://doi.org/10.1104/pp.16.00415">10.1104/pp.16.00415</a>.
  short: P. Zwack, I. De Clercq, T. Howton, H.T. Hallmark, A. Hurny, E. Keshishian,
    A. Parish, E. Benková, M.S. Mukhtar, F. Van Breusegem, A. Rashotte, Plant Physiology
    172 (2016) 1249–1258.
date_created: 2018-12-11T11:51:25Z
date_published: 2016-10-02T00:00:00Z
date_updated: 2025-09-22T08:22:54Z
day: '02'
department:
- _id: EvBe
doi: 10.1104/pp.16.00415
external_id:
  isi:
  - '000391147700047'
intvolume: '       172'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1104/pp.16.00415
month: '10'
oa: 1
oa_version: Published Version
page: 1249 - 1258
publication: Plant Physiology
publication_identifier:
  eissn:
  - 1532-2548
  issn:
  - 0032-0889
publication_status: published
publisher: American Society of Plant Biologists
publist_id: '5937'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Cytokinin response factor 6 represses cytokinin-associated genes during oxidative
  stress
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 172
year: '2016'
...
---
_id: '1332'
abstract:
- lang: eng
  text: Antibiotic-sensitive and -resistant bacteria coexist in natural environments
    with low, if detectable, antibiotic concentrations. Except possibly around localized
    antibiotic sources, where resistance can provide a strong advantage, bacterial
    fitness is dominated by stresses unaffected by resistance to the antibiotic. How
    do such mixed and heterogeneous conditions influence the selective advantage or
    disadvantage of antibiotic resistance? Here we find that sub-inhibitory levels
    of tetracyclines potentiate selection for or against tetracycline resistance around
    localized sources of almost any toxin or stress. Furthermore, certain stresses
    generate alternating rings of selection for and against resistance around a localized
    source of the antibiotic. In these conditions, localized antibiotic sources, even
    at high strengths, can actually produce a net selection against resistance to
    the antibiotic. Our results show that interactions between the effects of an antibiotic
    and other stresses in inhomogeneous environments can generate pervasive, complex
    patterns of selection both for and against antibiotic resistance.
acknowledgement: This work was partially supported by US National Institutes of Health
  grant R01-GM081617, Israeli Centers of Research Excellence I-CORE Program ISF Grant
  No. 152/11, and the European Research Council FP7 ERC Grant 281891.
article_number: '10333'
article_processing_charge: No
author:
- first_name: Remy P
  full_name: Chait, Remy P
  id: 3464AE84-F248-11E8-B48F-1D18A9856A87
  last_name: Chait
  orcid: 0000-0003-0876-3187
- first_name: Adam
  full_name: Palmer, Adam
  last_name: Palmer
- first_name: Idan
  full_name: Yelin, Idan
  last_name: Yelin
- first_name: Roy
  full_name: Kishony, Roy
  last_name: Kishony
citation:
  ama: Chait RP, Palmer A, Yelin I, Kishony R. Pervasive selection for and against
    antibiotic resistance in inhomogeneous multistress environments. <i>Nature Communications</i>.
    2016;7. doi:<a href="https://doi.org/10.1038/ncomms10333">10.1038/ncomms10333</a>
  apa: Chait, R. P., Palmer, A., Yelin, I., &#38; Kishony, R. (2016). Pervasive selection
    for and against antibiotic resistance in inhomogeneous multistress environments.
    <i>Nature Communications</i>. Nature Publishing Group. <a href="https://doi.org/10.1038/ncomms10333">https://doi.org/10.1038/ncomms10333</a>
  chicago: Chait, Remy P, Adam Palmer, Idan Yelin, and Roy Kishony. “Pervasive Selection
    for and against Antibiotic Resistance in Inhomogeneous Multistress Environments.”
    <i>Nature Communications</i>. Nature Publishing Group, 2016. <a href="https://doi.org/10.1038/ncomms10333">https://doi.org/10.1038/ncomms10333</a>.
  ieee: R. P. Chait, A. Palmer, I. Yelin, and R. Kishony, “Pervasive selection for
    and against antibiotic resistance in inhomogeneous multistress environments,”
    <i>Nature Communications</i>, vol. 7. Nature Publishing Group, 2016.
  ista: Chait RP, Palmer A, Yelin I, Kishony R. 2016. Pervasive selection for and
    against antibiotic resistance in inhomogeneous multistress environments. Nature
    Communications. 7, 10333.
  mla: Chait, Remy P., et al. “Pervasive Selection for and against Antibiotic Resistance
    in Inhomogeneous Multistress Environments.” <i>Nature Communications</i>, vol.
    7, 10333, Nature Publishing Group, 2016, doi:<a href="https://doi.org/10.1038/ncomms10333">10.1038/ncomms10333</a>.
  short: R.P. Chait, A. Palmer, I. Yelin, R. Kishony, Nature Communications 7 (2016).
date_created: 2018-12-11T11:51:25Z
date_published: 2016-01-20T00:00:00Z
date_updated: 2025-09-22T08:22:19Z
day: '20'
ddc:
- '570'
- '579'
department:
- _id: CaGu
- _id: GaTk
doi: 10.1038/ncomms10333
external_id:
  isi:
  - '000369021700002'
file:
- access_level: open_access
  checksum: ef147bcbb8bd37e9079cf3ce06f5815d
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:13:52Z
  date_updated: 2020-07-14T12:44:44Z
  file_id: '5039'
  file_name: IST-2016-662-v1+1_ncomms10333.pdf
  file_size: 1844107
  relation: main_file
file_date_updated: 2020-07-14T12:44:44Z
has_accepted_license: '1'
intvolume: '         7'
isi: 1
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
publication: Nature Communications
publication_status: published
publisher: Nature Publishing Group
publist_id: '5936'
pubrep_id: '662'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Pervasive selection for and against antibiotic resistance in inhomogeneous
  multistress environments
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 7
year: '2016'
...
---
_id: '1333'
abstract:
- lang: eng
  text: Social dilemmas force players to balance between personal and collective gain.
    In many dilemmas, such as elected governments negotiating climate-change mitigation
    measures, the decisions are made not by individual players but by their representatives.
    However, the behaviour of representatives in social dilemmas has not been investigated
    experimentally. Here inspired by the negotiations for greenhouse-gas emissions
    reductions, we experimentally study a collective-risk social dilemma that involves
    representatives deciding on behalf of their fellow group members. Representatives
    can be re-elected or voted out after each consecutive collective-risk game. Selfish
    players are preferentially elected and are hence found most frequently in the
    &quot;representatives&quot; treatment. Across all treatments, we identify the
    selfish players as extortioners. As predicted by our mathematical model, their
    steadfast strategies enforce cooperation from fair players who finally compensate
    almost completely the deficit caused by the extortionate co-players. Everybody
    gains, but the extortionate representatives and their groups gain the most.
acknowledgement: We thank the students for participation; H.-J. Krambeck for writing
  the software for the game; H. Arndt, T. Bakker, L. Becks, H. Brendelberger, S. Dobler
  and T. Reusch for support; and the Max Planck Society for the Advancement of Science
  for funding.
article_number: '10915'
article_processing_charge: No
author:
- first_name: Manfred
  full_name: Milinski, Manfred
  last_name: Milinski
- first_name: Christian
  full_name: Hilbe, Christian
  id: 2FDF8F3C-F248-11E8-B48F-1D18A9856A87
  last_name: Hilbe
  orcid: 0000-0001-5116-955X
- first_name: Dirk
  full_name: Semmann, Dirk
  last_name: Semmann
- first_name: Ralf
  full_name: Sommerfeld, Ralf
  last_name: Sommerfeld
- first_name: Jochem
  full_name: Marotzke, Jochem
  last_name: Marotzke
citation:
  ama: Milinski M, Hilbe C, Semmann D, Sommerfeld R, Marotzke J. Humans choose representatives
    who enforce cooperation in social dilemmas through extortion. <i>Nature Communications</i>.
    2016;7. doi:<a href="https://doi.org/10.1038/ncomms10915">10.1038/ncomms10915</a>
  apa: Milinski, M., Hilbe, C., Semmann, D., Sommerfeld, R., &#38; Marotzke, J. (2016).
    Humans choose representatives who enforce cooperation in social dilemmas through
    extortion. <i>Nature Communications</i>. Nature Publishing Group. <a href="https://doi.org/10.1038/ncomms10915">https://doi.org/10.1038/ncomms10915</a>
  chicago: Milinski, Manfred, Christian Hilbe, Dirk Semmann, Ralf Sommerfeld, and
    Jochem Marotzke. “Humans Choose Representatives Who Enforce Cooperation in Social
    Dilemmas through Extortion.” <i>Nature Communications</i>. Nature Publishing Group,
    2016. <a href="https://doi.org/10.1038/ncomms10915">https://doi.org/10.1038/ncomms10915</a>.
  ieee: M. Milinski, C. Hilbe, D. Semmann, R. Sommerfeld, and J. Marotzke, “Humans
    choose representatives who enforce cooperation in social dilemmas through extortion,”
    <i>Nature Communications</i>, vol. 7. Nature Publishing Group, 2016.
  ista: Milinski M, Hilbe C, Semmann D, Sommerfeld R, Marotzke J. 2016. Humans choose
    representatives who enforce cooperation in social dilemmas through extortion.
    Nature Communications. 7, 10915.
  mla: Milinski, Manfred, et al. “Humans Choose Representatives Who Enforce Cooperation
    in Social Dilemmas through Extortion.” <i>Nature Communications</i>, vol. 7, 10915,
    Nature Publishing Group, 2016, doi:<a href="https://doi.org/10.1038/ncomms10915">10.1038/ncomms10915</a>.
  short: M. Milinski, C. Hilbe, D. Semmann, R. Sommerfeld, J. Marotzke, Nature Communications
    7 (2016).
corr_author: '1'
date_created: 2018-12-11T11:51:25Z
date_published: 2016-03-07T00:00:00Z
date_updated: 2025-09-22T08:21:34Z
day: '07'
ddc:
- '519'
- '530'
- '599'
department:
- _id: KrCh
doi: 10.1038/ncomms10915
external_id:
  isi:
  - '000371720200001'
file:
- access_level: open_access
  checksum: 9ea0d7ce59a555a1cb8353d5559407cb
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:10:44Z
  date_updated: 2020-07-14T12:44:44Z
  file_id: '4834'
  file_name: IST-2016-661-v1+1_ncomms10915.pdf
  file_size: 1432577
  relation: main_file
file_date_updated: 2020-07-14T12:44:44Z
has_accepted_license: '1'
intvolume: '         7'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication: Nature Communications
publication_status: published
publisher: Nature Publishing Group
publist_id: '5935'
pubrep_id: '661'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Humans choose representatives who enforce cooperation in social dilemmas through
  extortion
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 7
year: '2016'
...
---
_id: '1334'
abstract:
- lang: eng
  text: Hippocampal neurons encode a cognitive map of space. These maps are thought
    to be updated during learning and in response to changes in the environment through
    activity-dependent synaptic plasticity. Here we examine how changes in activity
    influence spatial coding in rats using halorhodopsin-mediated, spatially selective
    optogenetic silencing. Halorhoposin stimulation leads to light-induced suppression
    in many place cells and interneurons; some place cells increase their firing through
    disinhibition, whereas some show no effect. We find that place fields of the unaffected
    subpopulation remain stable. On the other hand, place fields of suppressed place
    cells were unstable, showing remapping across sessions before and after optogenetic
    inhibition. Disinhibited place cells had stable maps but sustained an elevated
    firing rate. These findings suggest that place representation in the hippocampus
    is constantly governed by activity-dependent processes, and that disinhibition
    may provide a mechanism for rate remapping.
article_number: '11824'
article_processing_charge: No
author:
- first_name: Philipp
  full_name: Schönenberger, Philipp
  id: 3B9D816C-F248-11E8-B48F-1D18A9856A87
  last_name: Schönenberger
- first_name: Joseph
  full_name: O'Neill, Joseph
  id: 426376DC-F248-11E8-B48F-1D18A9856A87
  last_name: O'Neill
- first_name: Jozsef L
  full_name: Csicsvari, Jozsef L
  id: 3FA14672-F248-11E8-B48F-1D18A9856A87
  last_name: Csicsvari
  orcid: 0000-0002-5193-4036
citation:
  ama: Schönenberger P, O’Neill J, Csicsvari JL. Activity dependent plasticity of
    hippocampal place maps. <i>Nature Communications</i>. 2016;7. doi:<a href="https://doi.org/10.1038/ncomms11824">10.1038/ncomms11824</a>
  apa: Schönenberger, P., O’Neill, J., &#38; Csicsvari, J. L. (2016). Activity dependent
    plasticity of hippocampal place maps. <i>Nature Communications</i>. Nature Publishing
    Group. <a href="https://doi.org/10.1038/ncomms11824">https://doi.org/10.1038/ncomms11824</a>
  chicago: Schönenberger, Philipp, Joseph O’Neill, and Jozsef L Csicsvari. “Activity
    Dependent Plasticity of Hippocampal Place Maps.” <i>Nature Communications</i>.
    Nature Publishing Group, 2016. <a href="https://doi.org/10.1038/ncomms11824">https://doi.org/10.1038/ncomms11824</a>.
  ieee: P. Schönenberger, J. O’Neill, and J. L. Csicsvari, “Activity dependent plasticity
    of hippocampal place maps,” <i>Nature Communications</i>, vol. 7. Nature Publishing
    Group, 2016.
  ista: Schönenberger P, O’Neill J, Csicsvari JL. 2016. Activity dependent plasticity
    of hippocampal place maps. Nature Communications. 7, 11824.
  mla: Schönenberger, Philipp, et al. “Activity Dependent Plasticity of Hippocampal
    Place Maps.” <i>Nature Communications</i>, vol. 7, 11824, Nature Publishing Group,
    2016, doi:<a href="https://doi.org/10.1038/ncomms11824">10.1038/ncomms11824</a>.
  short: P. Schönenberger, J. O’Neill, J.L. Csicsvari, Nature Communications 7 (2016).
corr_author: '1'
date_created: 2018-12-11T11:51:26Z
date_published: 2016-06-10T00:00:00Z
date_updated: 2025-09-22T08:20:24Z
day: '10'
ddc:
- '570'
department:
- _id: JoCs
doi: 10.1038/ncomms11824
ec_funded: 1
external_id:
  isi:
  - '000378007300001'
file:
- access_level: open_access
  checksum: e43307754abe65b840a21939fe163618
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:16:10Z
  date_updated: 2020-07-14T12:44:44Z
  file_id: '5196'
  file_name: IST-2016-660-v1+1_ncomms11824.pdf
  file_size: 1793846
  relation: main_file
file_date_updated: 2020-07-14T12:44:44Z
has_accepted_license: '1'
intvolume: '         7'
isi: 1
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
project:
- _id: 257A4776-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '281511'
  name: Memory-related information processing in neuronal circuits of the hippocampus
    and entorhinal cortex
- _id: 257D4372-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I2072-B27
  name: Interneuron plasticity during spatial learning
publication: Nature Communications
publication_status: published
publisher: Nature Publishing Group
publist_id: '5934'
pubrep_id: '660'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Activity dependent plasticity of hippocampal place maps
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 7
year: '2016'
...
---
_id: '1335'
abstract:
- lang: eng
  text: In this paper we review various automata-theoretic formalisms for expressing
    quantitative properties. We start with finite-state Boolean automata that express
    the traditional regular properties. We then consider weighted ω-automata that
    can measure the average density of events, which finite-state Boolean automata
    cannot. However, even weighted ω-automata cannot express basic performance properties
    like average response time. We finally consider two formalisms of weighted ω-automata
    with monitors, where the monitors are either (a) counters or (b) weighted automata
    themselves. We present a translation result to establish that these two formalisms
    are equivalent. Weighted ω-automata with monitors generalize weighted ω-automata,
    and can express average response time property. They present a natural, robust,
    and expressive framework for quantitative specifications, with important decidable
    properties.
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Jan
  full_name: Otop, Jan
  id: 2FC5DA74-F248-11E8-B48F-1D18A9856A87
  last_name: Otop
citation:
  ama: 'Chatterjee K, Henzinger TA, Otop J. Quantitative monitor automata. In: Vol
    9837. Springer; 2016:23-38. doi:<a href="https://doi.org/10.1007/978-3-662-53413-7_2">10.1007/978-3-662-53413-7_2</a>'
  apa: 'Chatterjee, K., Henzinger, T. A., &#38; Otop, J. (2016). Quantitative monitor
    automata (Vol. 9837, pp. 23–38). Presented at the SAS: Static Analysis Symposium,
    Edinburgh, United Kingdom: Springer. <a href="https://doi.org/10.1007/978-3-662-53413-7_2">https://doi.org/10.1007/978-3-662-53413-7_2</a>'
  chicago: Chatterjee, Krishnendu, Thomas A Henzinger, and Jan Otop. “Quantitative
    Monitor Automata,” 9837:23–38. Springer, 2016. <a href="https://doi.org/10.1007/978-3-662-53413-7_2">https://doi.org/10.1007/978-3-662-53413-7_2</a>.
  ieee: 'K. Chatterjee, T. A. Henzinger, and J. Otop, “Quantitative monitor automata,”
    presented at the SAS: Static Analysis Symposium, Edinburgh, United Kingdom, 2016,
    vol. 9837, pp. 23–38.'
  ista: 'Chatterjee K, Henzinger TA, Otop J. 2016. Quantitative monitor automata.
    SAS: Static Analysis Symposium, LNCS, vol. 9837, 23–38.'
  mla: Chatterjee, Krishnendu, et al. <i>Quantitative Monitor Automata</i>. Vol. 9837,
    Springer, 2016, pp. 23–38, doi:<a href="https://doi.org/10.1007/978-3-662-53413-7_2">10.1007/978-3-662-53413-7_2</a>.
  short: K. Chatterjee, T.A. Henzinger, J. Otop, in:, Springer, 2016, pp. 23–38.
conference:
  end_date: 2016-09-10
  location: Edinburgh, United Kingdom
  name: 'SAS: Static Analysis Symposium'
  start_date: 2016-09-08
corr_author: '1'
date_created: 2018-12-11T11:51:26Z
date_published: 2016-08-31T00:00:00Z
date_updated: 2025-09-22T08:19:49Z
day: '31'
department:
- _id: KrCh
- _id: ToHe
doi: 10.1007/978-3-662-53413-7_2
ec_funded: 1
external_id:
  arxiv:
  - '1604.06764'
  isi:
  - '000388924600002'
intvolume: '      9837'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1604.06764
month: '08'
oa: 1
oa_version: Preprint
page: 23 - 38
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z211
  name: Formal methods for the design and analysis of complex systems
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 25892FC0-B435-11E9-9278-68D0E5697425
  grant_number: ICT15-003
  name: Efficient Algorithms for Computer Aided Verification
publication_status: published
publisher: Springer
publist_id: '5932'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Quantitative monitor automata
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 9837
year: '2016'
...
---
OA_place: publisher
OA_type: gold
_id: '19814'
abstract:
- lang: eng
  text: Metallic transition-metal dichalcogenides (TMDCs) are benchmark systems for
    studying and controlling intertwined electronic orders in solids, with superconductivity
    developing from a charge-density wave state. The interplay between such phases
    is thought to play a critical role in the unconventional superconductivity of
    cuprates, Fe-based and heavy-fermion systems, yet even for the more moderately-correlated
    TMDCs, their nature and origins have proved controversial. Here, we study a prototypical
    example, 2H-NbSe2, by spin- and angle-resolved photoemission and first-principles
    theory. We find that the normal state, from which its hallmark collective phases
    emerge, is characterized by quasiparticles whose spin is locked to their valley
    pseudospin. This results from a combination of strong spin–orbit interactions
    and local inversion symmetry breaking, while interlayer coupling further drives
    a rich three-dimensional momentum dependence of the underlying Fermi-surface spin
    texture. These findings necessitate a re-investigation of the nature of charge
    order and superconducting pairing in NbSe2 and related TMDCs.
article_number: '11711'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: L.
  full_name: Bawden, L.
  last_name: Bawden
- first_name: S. P.
  full_name: Cooil, S. P.
  last_name: Cooil
- first_name: F.
  full_name: Mazzola, F.
  last_name: Mazzola
- first_name: J. M.
  full_name: Riley, J. M.
  last_name: Riley
- first_name: L. J.
  full_name: Collins-McIntyre, L. J.
  last_name: Collins-McIntyre
- first_name: Veronika
  full_name: Sunko, Veronika
  id: 23cb1cf6-2c7a-11ef-91a4-f72fc19f20b3
  last_name: Sunko
  orcid: 0000-0003-2724-3523
- first_name: K. W. B.
  full_name: Hunvik, K. W. B.
  last_name: Hunvik
- first_name: M.
  full_name: Leandersson, M.
  last_name: Leandersson
- first_name: C. M.
  full_name: Polley, C. M.
  last_name: Polley
- first_name: T.
  full_name: Balasubramanian, T.
  last_name: Balasubramanian
- first_name: T. K.
  full_name: Kim, T. K.
  last_name: Kim
- first_name: M.
  full_name: Hoesch, M.
  last_name: Hoesch
- first_name: J. W.
  full_name: Wells, J. W.
  last_name: Wells
- first_name: G.
  full_name: Balakrishnan, G.
  last_name: Balakrishnan
- first_name: M. S.
  full_name: Bahramy, M. S.
  last_name: Bahramy
- first_name: P. D. C.
  full_name: King, P. D. C.
  last_name: King
citation:
  ama: Bawden L, Cooil SP, Mazzola F, et al. Spin-valley locking in the normal state
    of a transition-metal dichalcogenide superconductor. <i>Nature Communications</i>.
    2016;7. doi:<a href="https://doi.org/10.1038/ncomms11711">10.1038/ncomms11711</a>
  apa: Bawden, L., Cooil, S. P., Mazzola, F., Riley, J. M., Collins-McIntyre, L. J.,
    Sunko, V., … King, P. D. C. (2016). Spin-valley locking in the normal state of
    a transition-metal dichalcogenide superconductor. <i>Nature Communications</i>.
    Springer Nature. <a href="https://doi.org/10.1038/ncomms11711">https://doi.org/10.1038/ncomms11711</a>
  chicago: Bawden, L., S. P. Cooil, F. Mazzola, J. M. Riley, L. J. Collins-McIntyre,
    Veronika Sunko, K. W. B. Hunvik, et al. “Spin-Valley Locking in the Normal State
    of a Transition-Metal Dichalcogenide Superconductor.” <i>Nature Communications</i>.
    Springer Nature, 2016. <a href="https://doi.org/10.1038/ncomms11711">https://doi.org/10.1038/ncomms11711</a>.
  ieee: L. Bawden <i>et al.</i>, “Spin-valley locking in the normal state of a transition-metal
    dichalcogenide superconductor,” <i>Nature Communications</i>, vol. 7. Springer
    Nature, 2016.
  ista: Bawden L, Cooil SP, Mazzola F, Riley JM, Collins-McIntyre LJ, Sunko V, Hunvik
    KWB, Leandersson M, Polley CM, Balasubramanian T, Kim TK, Hoesch M, Wells JW,
    Balakrishnan G, Bahramy MS, King PDC. 2016. Spin-valley locking in the normal
    state of a transition-metal dichalcogenide superconductor. Nature Communications.
    7, 11711.
  mla: Bawden, L., et al. “Spin-Valley Locking in the Normal State of a Transition-Metal
    Dichalcogenide Superconductor.” <i>Nature Communications</i>, vol. 7, 11711, Springer
    Nature, 2016, doi:<a href="https://doi.org/10.1038/ncomms11711">10.1038/ncomms11711</a>.
  short: L. Bawden, S.P. Cooil, F. Mazzola, J.M. Riley, L.J. Collins-McIntyre, V.
    Sunko, K.W.B. Hunvik, M. Leandersson, C.M. Polley, T. Balasubramanian, T.K. Kim,
    M. Hoesch, J.W. Wells, G. Balakrishnan, M.S. Bahramy, P.D.C. King, Nature Communications
    7 (2016).
date_created: 2025-06-10T09:15:34Z
date_published: 2016-05-23T00:00:00Z
date_updated: 2025-06-10T13:10:23Z
day: '23'
ddc:
- '530'
doi: 10.1038/ncomms11711
extern: '1'
external_id:
  arxiv:
  - '1603.05207'
has_accepted_license: '1'
intvolume: '         7'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1038/ncomms11711
month: '05'
oa: 1
oa_version: Published Version
publication: Nature Communications
publication_identifier:
  issn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Spin-valley locking in the normal state of a transition-metal dichalcogenide
  superconductor
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2016'
...
---
OA_type: closed access
_id: '19991'
abstract:
- lang: eng
  text: 'When applying machine learning techniques to real-world problems, prior knowledge
    plays a crucial role in enriching the learning system. This prior knowledge is
    typically defined by domain experts and can be integrated into machine learning
    algorithms in a variety of ways: as a preference of certain prediction functions
    over others, as a Bayesian prior over parameters, or as additional information
    about the samples in the training set used for learning a prediction function.
    The latter setup is called learning using privileged information (LUPI) and was
    adopted by Vapnik and Vashist in (Neural Netw, 2009). Formally, LUPI refers to
    the setting when, in addition to the main data modality, the learning system has
    access to an extra source of information about the training examples. The additional
    source of information is only available during training and therefore is called
    privileged. The main goal of LUPI is to utilize privileged information and to
    learn a better model in the main data modality than one would learn without the
    privileged source. As an illustration, for protein classification based on amino-acid
    sequences, the protein tertiary structure can be considered additional information.
    Another example is recognizing objects in images; the textual information in the
    form of image tags contains additional object descriptions and can be used as
    privileged.'
article_processing_charge: No
author:
- first_name: Viktoriia
  full_name: Sharmanska, Viktoriia
  id: 2EA6D09E-F248-11E8-B48F-1D18A9856A87
  last_name: Sharmanska
  orcid: 0000-0003-0192-9308
- first_name: Novi
  full_name: Quadrianto, Novi
  last_name: Quadrianto
citation:
  ama: 'Sharmanska V, Quadrianto N. Learning Using Privileged Information. In: <i>Encyclopedia
    of Machine Learning and Data Mining</i>. Springer Nature; 2016:1-4. doi:<a href="https://doi.org/10.1007/978-1-4899-7502-7_892-1">10.1007/978-1-4899-7502-7_892-1</a>'
  apa: Sharmanska, V., &#38; Quadrianto, N. (2016). Learning Using Privileged Information.
    In <i>Encyclopedia of Machine Learning and Data Mining</i> (pp. 1–4). Springer
    Nature. <a href="https://doi.org/10.1007/978-1-4899-7502-7_892-1">https://doi.org/10.1007/978-1-4899-7502-7_892-1</a>
  chicago: Sharmanska, Viktoriia, and Novi Quadrianto. “Learning Using Privileged
    Information.” In <i>Encyclopedia of Machine Learning and Data Mining</i>, 1–4.
    Springer Nature, 2016. <a href="https://doi.org/10.1007/978-1-4899-7502-7_892-1">https://doi.org/10.1007/978-1-4899-7502-7_892-1</a>.
  ieee: V. Sharmanska and N. Quadrianto, “Learning Using Privileged Information,”
    in <i>Encyclopedia of Machine Learning and Data Mining</i>, Springer Nature, 2016,
    pp. 1–4.
  ista: 'Sharmanska V, Quadrianto N. 2016.Learning Using Privileged Information. In:
    Encyclopedia of Machine Learning and Data Mining. , 1–4.'
  mla: Sharmanska, Viktoriia, and Novi Quadrianto. “Learning Using Privileged Information.”
    <i>Encyclopedia of Machine Learning and Data Mining</i>, Springer Nature, 2016,
    pp. 1–4, doi:<a href="https://doi.org/10.1007/978-1-4899-7502-7_892-1">10.1007/978-1-4899-7502-7_892-1</a>.
  short: V. Sharmanska, N. Quadrianto, in:, Encyclopedia of Machine Learning and Data
    Mining, Springer Nature, 2016, pp. 1–4.
corr_author: '1'
date_created: 2025-07-10T13:57:52Z
date_published: 2016-07-06T00:00:00Z
date_updated: 2025-09-23T10:53:13Z
day: '06'
department:
- _id: ChLa
doi: 10.1007/978-1-4899-7502-7_892-1
language:
- iso: eng
month: '07'
oa_version: None
page: 1-4
publication: Encyclopedia of Machine Learning and Data Mining
publication_identifier:
  eisbn:
  - '9781489975027'
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Learning Using Privileged Information
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '1881'
abstract:
- lang: eng
  text: 'We consider random matrices of the form H=W+λV, λ∈ℝ+, where W is a real symmetric
    or complex Hermitian Wigner matrix of size N and V is a real bounded diagonal
    random matrix of size N with i.i.d.\ entries that are independent of W. We assume
    subexponential decay for the matrix entries of W and we choose λ∼1, so that the
    eigenvalues of W and λV are typically of the same order. Further, we assume that
    the density of the entries of V is supported on a single interval and is convex
    near the edges of its support. In this paper we prove that there is λ+∈ℝ+ such
    that the largest eigenvalues of H are in the limit of large N determined by the
    order statistics of V for λ&gt;λ+. In particular, the largest eigenvalue of H
    has a Weibull distribution in the limit N→∞ if λ&gt;λ+. Moreover, for N sufficiently
    large, we show that the eigenvectors associated to the largest eigenvalues are
    partially localized for λ&gt;λ+, while they are completely delocalized for λ&lt;λ+.
    Similar results hold for the lowest eigenvalues. '
acknowledgement: "Most of the presented work was obtained while Kevin Schnelli was
  staying at the IAS with the support of\r\nThe Fund For Math."
article_processing_charge: No
arxiv: 1
author:
- first_name: Jioon
  full_name: Lee, Jioon
  last_name: Lee
- first_name: Kevin
  full_name: Schnelli, Kevin
  id: 434AD0AE-F248-11E8-B48F-1D18A9856A87
  last_name: Schnelli
  orcid: 0000-0003-0954-3231
citation:
  ama: Lee J, Schnelli K. Extremal eigenvalues and eigenvectors of deformed Wigner
    matrices. <i>Probability Theory and Related Fields</i>. 2016;164(1-2):165-241.
    doi:<a href="https://doi.org/10.1007/s00440-014-0610-8">10.1007/s00440-014-0610-8</a>
  apa: Lee, J., &#38; Schnelli, K. (2016). Extremal eigenvalues and eigenvectors of
    deformed Wigner matrices. <i>Probability Theory and Related Fields</i>. Springer.
    <a href="https://doi.org/10.1007/s00440-014-0610-8">https://doi.org/10.1007/s00440-014-0610-8</a>
  chicago: Lee, Jioon, and Kevin Schnelli. “Extremal Eigenvalues and Eigenvectors
    of Deformed Wigner Matrices.” <i>Probability Theory and Related Fields</i>. Springer,
    2016. <a href="https://doi.org/10.1007/s00440-014-0610-8">https://doi.org/10.1007/s00440-014-0610-8</a>.
  ieee: J. Lee and K. Schnelli, “Extremal eigenvalues and eigenvectors of deformed
    Wigner matrices,” <i>Probability Theory and Related Fields</i>, vol. 164, no.
    1–2. Springer, pp. 165–241, 2016.
  ista: Lee J, Schnelli K. 2016. Extremal eigenvalues and eigenvectors of deformed
    Wigner matrices. Probability Theory and Related Fields. 164(1–2), 165–241.
  mla: Lee, Jioon, and Kevin Schnelli. “Extremal Eigenvalues and Eigenvectors of Deformed
    Wigner Matrices.” <i>Probability Theory and Related Fields</i>, vol. 164, no.
    1–2, Springer, 2016, pp. 165–241, doi:<a href="https://doi.org/10.1007/s00440-014-0610-8">10.1007/s00440-014-0610-8</a>.
  short: J. Lee, K. Schnelli, Probability Theory and Related Fields 164 (2016) 165–241.
corr_author: '1'
date_created: 2018-12-11T11:54:31Z
date_published: 2016-02-01T00:00:00Z
date_updated: 2025-09-18T10:46:46Z
day: '01'
department:
- _id: LaEr
doi: 10.1007/s00440-014-0610-8
ec_funded: 1
external_id:
  arxiv:
  - '1310.7057'
  isi:
  - '000373163300006'
intvolume: '       164'
isi: 1
issue: 1-2
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1310.7057
month: '02'
oa: 1
oa_version: Preprint
page: 165 - 241
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '338804'
  name: Random matrices, universality and disordered quantum systems
publication: Probability Theory and Related Fields
publication_status: published
publisher: Springer
publist_id: '5215'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Extremal eigenvalues and eigenvectors of deformed Wigner matrices
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 164
year: '2016'
...
---
_id: '1475'
abstract:
- lang: eng
  text: The actin cytoskeleton plays important roles in the formation and internalization
    of endocytic vesicles. In yeast, endocytic vesicles move towards early endosomes
    along actin cables, however, the molecular machinery regulating interaction between
    endocytic vesicles and actin cables is poorly understood. The Eps15-like protein
    Pan1p plays a key role in actin-mediated endocytosis and is negatively regulated
    by Ark1 and Prk1 kinases. Here we show that pan1 mutated to prevent phosphorylation
    at all 18 threonines, pan1-18TA, displayed almost the same endocytic defect as
    ark1Δ prk1Δ cells, and contained abnormal actin concentrations including several
    endocytic compartments. Early endosomes were highly localized in the actin concentrations
    and displayed movement along actin cables. The dephosphorylated form of Pan1p
    also caused stable associations between endocytic vesicles and actin cables, and
    between endocytic vesicles and endosomes. Thus Pan1 phosphorylation is part of
    a novel mechanism that regulates endocytic compartment interactions with each
    other and with actin cables.
article_number: e10276
article_processing_charge: No
author:
- first_name: Junko
  full_name: Toshima, Junko
  last_name: Toshima
- first_name: Eri
  full_name: Furuya, Eri
  last_name: Furuya
- first_name: Makoto
  full_name: Nagano, Makoto
  last_name: Nagano
- first_name: Chisa
  full_name: Kanno, Chisa
  last_name: Kanno
- first_name: Yuta
  full_name: Sakamoto, Yuta
  last_name: Sakamoto
- first_name: Masashi
  full_name: Ebihara, Masashi
  last_name: Ebihara
- first_name: Daria E
  full_name: Siekhaus, Daria E
  id: 3D224B9E-F248-11E8-B48F-1D18A9856A87
  last_name: Siekhaus
  orcid: 0000-0001-8323-8353
- first_name: Jiro
  full_name: Toshima, Jiro
  last_name: Toshima
citation:
  ama: Toshima J, Furuya E, Nagano M, et al. Yeast Eps15-like endocytic protein Pan1p
    regulates the interaction between endocytic vesicles, endosomes and the actin
    cytoskeleton. <i>eLife</i>. 2016;5(February 2016). doi:<a href="https://doi.org/10.7554/eLife.10276">10.7554/eLife.10276</a>
  apa: Toshima, J., Furuya, E., Nagano, M., Kanno, C., Sakamoto, Y., Ebihara, M.,
    … Toshima, J. (2016). Yeast Eps15-like endocytic protein Pan1p regulates the interaction
    between endocytic vesicles, endosomes and the actin cytoskeleton. <i>ELife</i>.
    eLife Sciences Publications. <a href="https://doi.org/10.7554/eLife.10276">https://doi.org/10.7554/eLife.10276</a>
  chicago: Toshima, Junko, Eri Furuya, Makoto Nagano, Chisa Kanno, Yuta Sakamoto,
    Masashi Ebihara, Daria E Siekhaus, and Jiro Toshima. “Yeast Eps15-like Endocytic
    Protein Pan1p Regulates the Interaction between Endocytic Vesicles, Endosomes
    and the Actin Cytoskeleton.” <i>ELife</i>. eLife Sciences Publications, 2016.
    <a href="https://doi.org/10.7554/eLife.10276">https://doi.org/10.7554/eLife.10276</a>.
  ieee: J. Toshima <i>et al.</i>, “Yeast Eps15-like endocytic protein Pan1p regulates
    the interaction between endocytic vesicles, endosomes and the actin cytoskeleton,”
    <i>eLife</i>, vol. 5, no. February 2016. eLife Sciences Publications, 2016.
  ista: Toshima J, Furuya E, Nagano M, Kanno C, Sakamoto Y, Ebihara M, Siekhaus DE,
    Toshima J. 2016. Yeast Eps15-like endocytic protein Pan1p regulates the interaction
    between endocytic vesicles, endosomes and the actin cytoskeleton. eLife. 5(February
    2016), e10276.
  mla: Toshima, Junko, et al. “Yeast Eps15-like Endocytic Protein Pan1p Regulates
    the Interaction between Endocytic Vesicles, Endosomes and the Actin Cytoskeleton.”
    <i>ELife</i>, vol. 5, no. February 2016, e10276, eLife Sciences Publications,
    2016, doi:<a href="https://doi.org/10.7554/eLife.10276">10.7554/eLife.10276</a>.
  short: J. Toshima, E. Furuya, M. Nagano, C. Kanno, Y. Sakamoto, M. Ebihara, D.E.
    Siekhaus, J. Toshima, ELife 5 (2016).
date_created: 2018-12-11T11:52:14Z
date_published: 2016-02-25T00:00:00Z
date_updated: 2025-09-18T11:41:25Z
day: '25'
ddc:
- '570'
department:
- _id: DaSi
doi: 10.7554/eLife.10276
ec_funded: 1
external_id:
  isi:
  - '000371885700001'
file:
- access_level: open_access
  checksum: d1cc44870580756ba8badd8e41adfdb5
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:10:08Z
  date_updated: 2020-07-14T12:44:56Z
  file_id: '4793'
  file_name: IST-2016-529-v1+1_elife-10276-v1.pdf
  file_size: 5198001
  relation: main_file
file_date_updated: 2020-07-14T12:44:56Z
has_accepted_license: '1'
intvolume: '         5'
isi: 1
issue: February 2016
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
project:
- _id: 2536F660-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '334077'
  name: Investigating the role of transporters in invasive migration through junctions
publication: eLife
publication_status: published
publisher: eLife Sciences Publications
publist_id: '5721'
pubrep_id: '529'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Yeast Eps15-like endocytic protein Pan1p regulates the interaction between
  endocytic vesicles, endosomes and the actin cytoskeleton
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 5
year: '2016'
...
---
_id: '1476'
abstract:
- lang: eng
  text: The dynamic assembly and disassembly of actin filaments is essential for the
    formation and transport of vesicles during endocytosis. In yeast, two types of
    actin structures, namely cortical patches and cytoplasmic cables, play a direct
    role in endocytosis, but how their interaction is regulated remains unclear. Here,
    we show that Srv2/CAP, an evolutionarily conserved actin regulator, is required
    for efficient endocytosis owing to its role in the formation of the actin patches
    that aid initial vesicle invagination and of the actin cables that these move
    along. Deletion of the SRV2 gene resulted in the appearance of aberrant fragmented
    actin cables that frequently moved past actin patches, the sites of endocytosis.
    We find that the C-terminal CARP domain of Srv2p is vitally important for the
    proper assembly of actin patches and cables; we also demonstrate that the N-terminal
    helical folded domain of Srv2 is required for its localization to actin patches,
    specifically to the ADP-actin rich region through an interaction with cofilin.
    These results demonstrate the in vivo roles of Srv2p in the regulation of the
    actin cytoskeleton during clathrin-mediated endocytosis
acknowledgement: We are grateful to Anthony Bretscher (Cornell University, NY) for
  providing the bni1-12 bnr1Δ (Y4135) strain. J.Y.T. was supported by a Japan Society
  for the Promotion of Science (JSPS) KAKENHI grant [grant number 26440067]; the Takeda
  Science Foundation; and the Novartis Foundation (Japan). J.T. was supported by a
  JSPS KAKENHI grant [grant number 25440054]; the Takeda Science Foundation; and the
  Kurata Memorial Hitachi Science and Technology Foundation. D.E.S. was supported
  by the European Union [grant number PCIG12-GA-2012-334077].
article_processing_charge: No
author:
- first_name: Junko
  full_name: Toshima, Junko
  last_name: Toshima
- first_name: Chika
  full_name: Horikomi, Chika
  last_name: Horikomi
- first_name: Asuka
  full_name: Okada, Asuka
  last_name: Okada
- first_name: Makiko
  full_name: Hatori, Makiko
  last_name: Hatori
- first_name: Makoto
  full_name: Nagano, Makoto
  last_name: Nagano
- first_name: Atsushi
  full_name: Masuda, Atsushi
  last_name: Masuda
- first_name: Wataru
  full_name: Yamamoto, Wataru
  last_name: Yamamoto
- first_name: Daria E
  full_name: Siekhaus, Daria E
  id: 3D224B9E-F248-11E8-B48F-1D18A9856A87
  last_name: Siekhaus
  orcid: 0000-0001-8323-8353
- first_name: Jiro
  full_name: Toshima, Jiro
  last_name: Toshima
citation:
  ama: Toshima J, Horikomi C, Okada A, et al. Srv2/CAP is required for polarized actin
    cable assembly and patch internalization during clathrin-mediated endocytosis.
    <i>Journal of Cell Science</i>. 2016;129(2):367-379. doi:<a href="https://doi.org/10.1242/jcs.176651">10.1242/jcs.176651</a>
  apa: Toshima, J., Horikomi, C., Okada, A., Hatori, M., Nagano, M., Masuda, A., …
    Toshima, J. (2016). Srv2/CAP is required for polarized actin cable assembly and
    patch internalization during clathrin-mediated endocytosis. <i>Journal of Cell
    Science</i>. Company of Biologists. <a href="https://doi.org/10.1242/jcs.176651">https://doi.org/10.1242/jcs.176651</a>
  chicago: Toshima, Junko, Chika Horikomi, Asuka Okada, Makiko Hatori, Makoto Nagano,
    Atsushi Masuda, Wataru Yamamoto, Daria E Siekhaus, and Jiro Toshima. “Srv2/CAP
    Is Required for Polarized Actin Cable Assembly and Patch Internalization during
    Clathrin-Mediated Endocytosis.” <i>Journal of Cell Science</i>. Company of Biologists,
    2016. <a href="https://doi.org/10.1242/jcs.176651">https://doi.org/10.1242/jcs.176651</a>.
  ieee: J. Toshima <i>et al.</i>, “Srv2/CAP is required for polarized actin cable
    assembly and patch internalization during clathrin-mediated endocytosis,” <i>Journal
    of Cell Science</i>, vol. 129, no. 2. Company of Biologists, pp. 367–379, 2016.
  ista: Toshima J, Horikomi C, Okada A, Hatori M, Nagano M, Masuda A, Yamamoto W,
    Siekhaus DE, Toshima J. 2016. Srv2/CAP is required for polarized actin cable assembly
    and patch internalization during clathrin-mediated endocytosis. Journal of Cell
    Science. 129(2), 367–379.
  mla: Toshima, Junko, et al. “Srv2/CAP Is Required for Polarized Actin Cable Assembly
    and Patch Internalization during Clathrin-Mediated Endocytosis.” <i>Journal of
    Cell Science</i>, vol. 129, no. 2, Company of Biologists, 2016, pp. 367–79, doi:<a
    href="https://doi.org/10.1242/jcs.176651">10.1242/jcs.176651</a>.
  short: J. Toshima, C. Horikomi, A. Okada, M. Hatori, M. Nagano, A. Masuda, W. Yamamoto,
    D.E. Siekhaus, J. Toshima, Journal of Cell Science 129 (2016) 367–379.
date_created: 2018-12-11T11:52:14Z
date_published: 2016-01-15T00:00:00Z
date_updated: 2025-09-18T11:39:13Z
day: '15'
ddc:
- '570'
- '576'
department:
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doi: 10.1242/jcs.176651
ec_funded: 1
external_id:
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  - '000369504000012'
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page: 367 - 379
project:
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  call_identifier: FP7
  grant_number: '334077'
  name: Investigating the role of transporters in invasive migration through junctions
publication: Journal of Cell Science
publication_status: published
publisher: Company of Biologists
publist_id: '5720'
pubrep_id: '767'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Srv2/CAP is required for polarized actin cable assembly and patch internalization
  during clathrin-mediated endocytosis
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 129
year: '2016'
...
---
_id: '1477'
abstract:
- lang: eng
  text: We consider partially observable Markov decision processes (POMDPs) with ω-regular
    conditions specified as parity objectives. The class of ω-regular languages provides
    a robust specification language to express properties in verification, and parity
    objectives are canonical forms to express them. The qualitative analysis problem
    given a POMDP and a parity objective asks whether there is a strategy to ensure
    that the objective is satisfied with probability 1 (resp. positive probability).
    While the qualitative analysis problems are undecidable even for special cases
    of parity objectives, we establish decidability (with optimal complexity) for
    POMDPs with all parity objectives under finite-memory strategies. We establish
    optimal (exponential) memory bounds and EXPTIME-completeness of the qualitative
    analysis problems under finite-memory strategies for POMDPs with parity objectives.
    We also present a practical approach, where we design heuristics to deal with
    the exponential complexity, and have applied our implementation on a number of
    POMDP examples.
article_processing_charge: No
arxiv: 1
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Martin
  full_name: Chmelik, Martin
  id: 3624234E-F248-11E8-B48F-1D18A9856A87
  last_name: Chmelik
- first_name: Mathieu
  full_name: Tracol, Mathieu
  id: 3F54FA38-F248-11E8-B48F-1D18A9856A87
  last_name: Tracol
citation:
  ama: Chatterjee K, Chmelik M, Tracol M. What is decidable about partially observable
    Markov decision processes with ω-regular objectives. <i>Journal of Computer and
    System Sciences</i>. 2016;82(5):878-911. doi:<a href="https://doi.org/10.1016/j.jcss.2016.02.009">10.1016/j.jcss.2016.02.009</a>
  apa: Chatterjee, K., Chmelik, M., &#38; Tracol, M. (2016). What is decidable about
    partially observable Markov decision processes with ω-regular objectives. <i>Journal
    of Computer and System Sciences</i>. Elsevier. <a href="https://doi.org/10.1016/j.jcss.2016.02.009">https://doi.org/10.1016/j.jcss.2016.02.009</a>
  chicago: Chatterjee, Krishnendu, Martin Chmelik, and Mathieu Tracol. “What Is Decidable
    about Partially Observable Markov Decision Processes with ω-Regular Objectives.”
    <i>Journal of Computer and System Sciences</i>. Elsevier, 2016. <a href="https://doi.org/10.1016/j.jcss.2016.02.009">https://doi.org/10.1016/j.jcss.2016.02.009</a>.
  ieee: K. Chatterjee, M. Chmelik, and M. Tracol, “What is decidable about partially
    observable Markov decision processes with ω-regular objectives,” <i>Journal of
    Computer and System Sciences</i>, vol. 82, no. 5. Elsevier, pp. 878–911, 2016.
  ista: Chatterjee K, Chmelik M, Tracol M. 2016. What is decidable about partially
    observable Markov decision processes with ω-regular objectives. Journal of Computer
    and System Sciences. 82(5), 878–911.
  mla: Chatterjee, Krishnendu, et al. “What Is Decidable about Partially Observable
    Markov Decision Processes with ω-Regular Objectives.” <i>Journal of Computer and
    System Sciences</i>, vol. 82, no. 5, Elsevier, 2016, pp. 878–911, doi:<a href="https://doi.org/10.1016/j.jcss.2016.02.009">10.1016/j.jcss.2016.02.009</a>.
  short: K. Chatterjee, M. Chmelik, M. Tracol, Journal of Computer and System Sciences
    82 (2016) 878–911.
corr_author: '1'
date_created: 2018-12-11T11:52:15Z
date_published: 2016-08-01T00:00:00Z
date_updated: 2025-09-18T11:38:39Z
day: '01'
department:
- _id: KrCh
doi: 10.1016/j.jcss.2016.02.009
ec_funded: 1
external_id:
  arxiv:
  - '1309.2802'
  isi:
  - '000374425900015'
intvolume: '        82'
isi: 1
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1309.2802
month: '08'
oa: 1
oa_version: Preprint
page: 878 - 911
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11407
  name: Game Theory
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2587B514-B435-11E9-9278-68D0E5697425
  name: Microsoft Research Faculty Fellowship
publication: Journal of Computer and System Sciences
publication_status: published
publisher: Elsevier
publist_id: '5718'
quality_controlled: '1'
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scopus_import: '1'
status: public
title: What is decidable about partially observable Markov decision processes with
  ω-regular objectives
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 82
year: '2016'
...
