---
_id: '1485'
abstract:
- lang: eng
  text: In this article the notion of metabolic turnover is revisited in the light
    of recent results of out-of-equilibrium thermodynamics. By means of Monte Carlo
    methods we perform an exact sampling of the enzymatic fluxes in a genome scale
    metabolic network of E. Coli in stationary growth conditions from which we infer
    the metabolites turnover times. However the latter are inferred from net fluxes,
    and we argue that this approximation is not valid for enzymes working nearby thermodynamic
    equilibrium. We recalculate turnover times from total fluxes by performing an
    energy balance analysis of the network and recurring to the fluctuation theorem.
    We find in many cases values one of order of magnitude lower, implying a faster
    picture of intermediate metabolism.
article_number: '016003'
article_processing_charge: No
arxiv: 1
author:
- first_name: Daniele
  full_name: De Martino, Daniele
  id: 3FF5848A-F248-11E8-B48F-1D18A9856A87
  last_name: De Martino
  orcid: 0000-0002-5214-4706
citation:
  ama: De Martino D. Genome-scale estimate of the metabolic turnover of E. Coli from
    the energy balance analysis. <i>Physical Biology</i>. 2016;13(1). doi:<a href="https://doi.org/10.1088/1478-3975/13/1/016003">10.1088/1478-3975/13/1/016003</a>
  apa: De Martino, D. (2016). Genome-scale estimate of the metabolic turnover of E.
    Coli from the energy balance analysis. <i>Physical Biology</i>. IOP Publishing.
    <a href="https://doi.org/10.1088/1478-3975/13/1/016003">https://doi.org/10.1088/1478-3975/13/1/016003</a>
  chicago: De Martino, Daniele. “Genome-Scale Estimate of the Metabolic Turnover of
    E. Coli from the Energy Balance Analysis.” <i>Physical Biology</i>. IOP Publishing,
    2016. <a href="https://doi.org/10.1088/1478-3975/13/1/016003">https://doi.org/10.1088/1478-3975/13/1/016003</a>.
  ieee: D. De Martino, “Genome-scale estimate of the metabolic turnover of E. Coli
    from the energy balance analysis,” <i>Physical Biology</i>, vol. 13, no. 1. IOP
    Publishing, 2016.
  ista: De Martino D. 2016. Genome-scale estimate of the metabolic turnover of E.
    Coli from the energy balance analysis. Physical Biology. 13(1), 016003.
  mla: De Martino, Daniele. “Genome-Scale Estimate of the Metabolic Turnover of E.
    Coli from the Energy Balance Analysis.” <i>Physical Biology</i>, vol. 13, no.
    1, 016003, IOP Publishing, 2016, doi:<a href="https://doi.org/10.1088/1478-3975/13/1/016003">10.1088/1478-3975/13/1/016003</a>.
  short: D. De Martino, Physical Biology 13 (2016).
corr_author: '1'
date_created: 2018-12-11T11:52:18Z
date_published: 2016-01-29T00:00:00Z
date_updated: 2025-09-18T11:34:17Z
day: '29'
department:
- _id: GaTk
doi: 10.1088/1478-3975/13/1/016003
ec_funded: 1
external_id:
  arxiv:
  - '1505.04613'
  isi:
  - '000371585200003'
intvolume: '        13'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1505.04613
month: '01'
oa: 1
oa_version: Preprint
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Physical Biology
publication_status: published
publisher: IOP Publishing
publist_id: '5702'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Genome-scale estimate of the metabolic turnover of E. Coli from the energy
  balance analysis
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 13
year: '2016'
...
---
_id: '1486'
abstract:
- lang: eng
  text: We review recent results concerning the mathematical properties of the Bardeen-Cooper-Schrieffer
    (BCS) functional of superconductivity, which were obtained in a series of papers,
    partly in collaboration with R. Frank, E. Hamza, S. Naboko, and J. P. Solovej.
    Our discussion includes, in particular, an investigation of the critical temperature
    for a general class of interaction potentials, as well as a study of its dependence
    on external fields. We shall explain how the Ginzburg-Landau model can be derived
    from the BCS theory in a suitable parameter regime.
article_number: '021101'
article_processing_charge: No
arxiv: 1
author:
- first_name: Christian
  full_name: Hainzl, Christian
  last_name: Hainzl
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
citation:
  ama: Hainzl C, Seiringer R. The Bardeen–Cooper–Schrieffer functional of superconductivity
    and its mathematical properties. <i>Journal of Mathematical Physics</i>. 2016;57(2).
    doi:<a href="https://doi.org/10.1063/1.4941723">10.1063/1.4941723</a>
  apa: Hainzl, C., &#38; Seiringer, R. (2016). The Bardeen–Cooper–Schrieffer functional
    of superconductivity and its mathematical properties. <i>Journal of Mathematical
    Physics</i>. American Institute of Physics. <a href="https://doi.org/10.1063/1.4941723">https://doi.org/10.1063/1.4941723</a>
  chicago: Hainzl, Christian, and Robert Seiringer. “The Bardeen–Cooper–Schrieffer
    Functional of Superconductivity and Its Mathematical Properties.” <i>Journal of
    Mathematical Physics</i>. American Institute of Physics, 2016. <a href="https://doi.org/10.1063/1.4941723">https://doi.org/10.1063/1.4941723</a>.
  ieee: C. Hainzl and R. Seiringer, “The Bardeen–Cooper–Schrieffer functional of superconductivity
    and its mathematical properties,” <i>Journal of Mathematical Physics</i>, vol.
    57, no. 2. American Institute of Physics, 2016.
  ista: Hainzl C, Seiringer R. 2016. The Bardeen–Cooper–Schrieffer functional of superconductivity
    and its mathematical properties. Journal of Mathematical Physics. 57(2), 021101.
  mla: Hainzl, Christian, and Robert Seiringer. “The Bardeen–Cooper–Schrieffer Functional
    of Superconductivity and Its Mathematical Properties.” <i>Journal of Mathematical
    Physics</i>, vol. 57, no. 2, 021101, American Institute of Physics, 2016, doi:<a
    href="https://doi.org/10.1063/1.4941723">10.1063/1.4941723</a>.
  short: C. Hainzl, R. Seiringer, Journal of Mathematical Physics 57 (2016).
date_created: 2018-12-11T11:52:18Z
date_published: 2016-02-24T00:00:00Z
date_updated: 2025-09-18T11:31:30Z
day: '24'
department:
- _id: RoSe
doi: 10.1063/1.4941723
external_id:
  arxiv:
  - '1511.01995'
  isi:
  - '000371620000001'
intvolume: '        57'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1511.01995
month: '02'
oa: 1
oa_version: Preprint
publication: Journal of Mathematical Physics
publication_status: published
publisher: American Institute of Physics
publist_id: '5701'
quality_controlled: '1'
scopus_import: '1'
status: public
title: The Bardeen–Cooper–Schrieffer functional of superconductivity and its mathematical
  properties
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 57
year: '2016'
...
---
_id: '1487'
abstract:
- lang: eng
  text: Rhythms with time scales of multiple cycles per second permeate the mammalian
    brain, yet neuroscientists are not certain of their functional roles. One leading
    idea is that coherent oscillation between two brain regions facilitates the exchange
    of information between them. In rats, the hippocampus and the vibrissal sensorimotor
    system both are characterized by rhythmic oscillation in the theta range, 5–12
    Hz. Previous work has been divided as to whether the two rhythms are independent
    or coherent. To resolve this question, we acquired three measures from rats—whisker
    motion, hippocampal local field potential (LFP), and barrel cortex unit firing—during
    a whisker-mediated texture discrimination task and during control conditions (not
    engaged in a whisker-mediated memory task). Compared to control conditions, the
    theta band of hippocampal LFP showed a marked increase in power as the rats approached
    and then palpated the texture. Phase synchronization between whisking and hippocampal
    LFP increased by almost 50% during approach and texture palpation. In addition,
    a greater proportion of barrel cortex neurons showed firing that was phase-locked
    to hippocampal theta while rats were engaged in the discrimination task. Consistent
    with a behavioral consequence of phase synchronization, the rats identified the
    texture more rapidly and with lower error likelihood on trials in which there
    was an increase in theta-whisking coherence at the moment of texture palpation.
    These results suggest that coherence between the whisking rhythm, barrel cortex
    firing, and hippocampal LFP is augmented selectively during epochs in which the
    rat collects sensory information and that such coherence enhances the efficiency
    of integration of stimulus information into memory and decision-making centers.
acknowledgement: We thank Eric Maris, Demian Battaglia, and Rodrigo Quian Quiroga
  for useful discussions. We are grateful to Fabrizio Manzino and Marco Gigante for
  construction of the behavioral apparatus, Igor Perkon for developing custom whisker
  tracking software and to Francesca Pulecchi for animal care and histological processing.
article_number: e1002384
article_processing_charge: No
author:
- first_name: Natalia
  full_name: Grion, Natalia
  last_name: Grion
- first_name: Athena
  full_name: Akrami, Athena
  last_name: Akrami
- first_name: Yangfang
  full_name: Zuo, Yangfang
  last_name: Zuo
- first_name: Federico
  full_name: Stella, Federico
  id: 39AF1E74-F248-11E8-B48F-1D18A9856A87
  last_name: Stella
  orcid: 0000-0001-9439-3148
- first_name: Mathew
  full_name: Diamond, Mathew
  last_name: Diamond
citation:
  ama: Grion N, Akrami A, Zuo Y, Stella F, Diamond M. Coherence between rat sensorimotor
    system and hippocampus is enhanced during tactile discrimination. <i>PLoS Biology</i>.
    2016;14(2). doi:<a href="https://doi.org/10.1371/journal.pbio.1002384">10.1371/journal.pbio.1002384</a>
  apa: Grion, N., Akrami, A., Zuo, Y., Stella, F., &#38; Diamond, M. (2016). Coherence
    between rat sensorimotor system and hippocampus is enhanced during tactile discrimination.
    <i>PLoS Biology</i>. Public Library of Science. <a href="https://doi.org/10.1371/journal.pbio.1002384">https://doi.org/10.1371/journal.pbio.1002384</a>
  chicago: Grion, Natalia, Athena Akrami, Yangfang Zuo, Federico Stella, and Mathew
    Diamond. “Coherence between Rat Sensorimotor System and Hippocampus Is Enhanced
    during Tactile Discrimination.” <i>PLoS Biology</i>. Public Library of Science,
    2016. <a href="https://doi.org/10.1371/journal.pbio.1002384">https://doi.org/10.1371/journal.pbio.1002384</a>.
  ieee: N. Grion, A. Akrami, Y. Zuo, F. Stella, and M. Diamond, “Coherence between
    rat sensorimotor system and hippocampus is enhanced during tactile discrimination,”
    <i>PLoS Biology</i>, vol. 14, no. 2. Public Library of Science, 2016.
  ista: Grion N, Akrami A, Zuo Y, Stella F, Diamond M. 2016. Coherence between rat
    sensorimotor system and hippocampus is enhanced during tactile discrimination.
    PLoS Biology. 14(2), e1002384.
  mla: Grion, Natalia, et al. “Coherence between Rat Sensorimotor System and Hippocampus
    Is Enhanced during Tactile Discrimination.” <i>PLoS Biology</i>, vol. 14, no.
    2, e1002384, Public Library of Science, 2016, doi:<a href="https://doi.org/10.1371/journal.pbio.1002384">10.1371/journal.pbio.1002384</a>.
  short: N. Grion, A. Akrami, Y. Zuo, F. Stella, M. Diamond, PLoS Biology 14 (2016).
date_created: 2018-12-11T11:52:18Z
date_published: 2016-02-18T00:00:00Z
date_updated: 2025-09-18T11:30:07Z
day: '18'
ddc:
- '570'
department:
- _id: JoCs
doi: 10.1371/journal.pbio.1002384
external_id:
  isi:
  - '000371883600015'
file:
- access_level: open_access
  checksum: 3a5ce0d4e4e36bd6ceb4be761f85644a
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:15:11Z
  date_updated: 2020-07-14T12:44:57Z
  file_id: '5129'
  file_name: IST-2016-518-v1+1_journal.pbio.1002384.PDF
  file_size: 2879899
  relation: main_file
file_date_updated: 2020-07-14T12:44:57Z
has_accepted_license: '1'
intvolume: '        14'
isi: 1
issue: '2'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
publication: PLoS Biology
publication_status: published
publisher: Public Library of Science
publist_id: '5700'
pubrep_id: '518'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Coherence between rat sensorimotor system and hippocampus is enhanced during
  tactile discrimination
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 14
year: '2016'
...
---
_id: '1488'
abstract:
- lang: eng
  text: Branching morphogenesis of the epithelial ureteric bud forms the renal collecting
    duct system and is critical for normal nephron number, while low nephron number
    is implicated in hypertension and renal disease. Ureteric bud growth and branching
    requires GDNF signaling from the surrounding mesenchyme to cells at the ureteric
    bud tips, via the Ret receptor tyrosine kinase and coreceptor Gfrα1; Ret signaling
    up-regulates transcription factors Etv4 and Etv5, which are also critical for
    branching. Despite extensive knowledge of the genetic control of these events,
    it is not understood, at the cellular level, how renal branching morphogenesis
    is achieved or how Ret signaling influences epithelial cell behaviors to promote
    this process. Analysis of chimeric embryos previously suggested a role for Ret
    signaling in promoting cell rearrangements in the nephric duct, but this method
    was unsuited to study individual cell behaviors during ureteric bud branching.
    Here, we use Mosaic Analysis with Double Markers (MADM), combined with organ culture
    and time-lapse imaging, to trace the movements and divisions of individual ureteric
    bud tip cells. We first examine wild-type clones and then Ret or Etv4 mutant/wild-type
    clones in which the mutant and wild-type sister cells are differentially and heritably
    marked by green and red fluorescent proteins. We find that, in normal kidneys,
    most individual tip cells behave as self-renewing progenitors, some of whose progeny
    remain at the tips while others populate the growing UB trunks. In Ret or Etv4
    MADM clones, the wild-type cells generated at a UB tip are much more likely to
    remain at, or move to, the new tips during branching and elongation, while their
    Ret−/− or Etv4−/− sister cells tend to lag behind and contribute only to the trunks.
    By tracking successive mitoses in a cell lineage, we find that Ret signaling has
    little effect on proliferation, in contrast to its effects on cell movement. Our
    results show that Ret/Etv4 signaling promotes directed cell movements in the ureteric
    bud tips, and suggest a model in which these cell movements mediate branching
    morphogenesis.
acknowledgement: We thank Silvia Arber, Thomas Jessell, Kenneth M. Murphy, Carlton
  Bates, Hideki Enomoto, Liqun Luo and Andrew McMahon for mouse strains; Thomas Jessell
  for antibodies; and Laura Martinez Prat for experimental assistance.
article_number: e1002382
article_processing_charge: No
author:
- first_name: Paul
  full_name: Riccio, Paul
  last_name: Riccio
- first_name: Cristina
  full_name: Cebrián, Cristina
  last_name: Cebrián
- first_name: Hui
  full_name: Zong, Hui
  last_name: Zong
- first_name: Simon
  full_name: Hippenmeyer, Simon
  id: 37B36620-F248-11E8-B48F-1D18A9856A87
  last_name: Hippenmeyer
  orcid: 0000-0003-2279-1061
- first_name: Frank
  full_name: Costantini, Frank
  last_name: Costantini
citation:
  ama: Riccio P, Cebrián C, Zong H, Hippenmeyer S, Costantini F. Ret and Etv4 promote
    directed movements of progenitor cells during renal branching morphogenesis. <i>PLoS
    Biology</i>. 2016;14(2). doi:<a href="https://doi.org/10.1371/journal.pbio.1002382">10.1371/journal.pbio.1002382</a>
  apa: Riccio, P., Cebrián, C., Zong, H., Hippenmeyer, S., &#38; Costantini, F. (2016).
    Ret and Etv4 promote directed movements of progenitor cells during renal branching
    morphogenesis. <i>PLoS Biology</i>. Public Library of Science. <a href="https://doi.org/10.1371/journal.pbio.1002382">https://doi.org/10.1371/journal.pbio.1002382</a>
  chicago: Riccio, Paul, Cristina Cebrián, Hui Zong, Simon Hippenmeyer, and Frank
    Costantini. “Ret and Etv4 Promote Directed Movements of Progenitor Cells during
    Renal Branching Morphogenesis.” <i>PLoS Biology</i>. Public Library of Science,
    2016. <a href="https://doi.org/10.1371/journal.pbio.1002382">https://doi.org/10.1371/journal.pbio.1002382</a>.
  ieee: P. Riccio, C. Cebrián, H. Zong, S. Hippenmeyer, and F. Costantini, “Ret and
    Etv4 promote directed movements of progenitor cells during renal branching morphogenesis,”
    <i>PLoS Biology</i>, vol. 14, no. 2. Public Library of Science, 2016.
  ista: Riccio P, Cebrián C, Zong H, Hippenmeyer S, Costantini F. 2016. Ret and Etv4
    promote directed movements of progenitor cells during renal branching morphogenesis.
    PLoS Biology. 14(2), e1002382.
  mla: Riccio, Paul, et al. “Ret and Etv4 Promote Directed Movements of Progenitor
    Cells during Renal Branching Morphogenesis.” <i>PLoS Biology</i>, vol. 14, no.
    2, e1002382, Public Library of Science, 2016, doi:<a href="https://doi.org/10.1371/journal.pbio.1002382">10.1371/journal.pbio.1002382</a>.
  short: P. Riccio, C. Cebrián, H. Zong, S. Hippenmeyer, F. Costantini, PLoS Biology
    14 (2016).
date_created: 2018-12-11T11:52:19Z
date_published: 2016-02-19T00:00:00Z
date_updated: 2025-09-18T11:28:32Z
day: '19'
ddc:
- '570'
department:
- _id: SiHi
doi: 10.1371/journal.pbio.1002382
external_id:
  isi:
  - '000371883600013'
file:
- access_level: open_access
  checksum: 7f8fa1b3a29f94c0a14dd4465278cdbc
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:13:42Z
  date_updated: 2020-07-14T12:44:57Z
  file_id: '5027'
  file_name: IST-2016-517-v1+1_journal.pbio.1002382_1_.PDF
  file_size: 5904773
  relation: main_file
file_date_updated: 2020-07-14T12:44:57Z
has_accepted_license: '1'
intvolume: '        14'
isi: 1
issue: '2'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
publication: PLoS Biology
publication_status: published
publisher: Public Library of Science
publist_id: '5699'
pubrep_id: '517'
quality_controlled: '1'
related_material:
  record:
  - id: '9703'
    relation: research_data
    status: deleted
scopus_import: '1'
status: public
title: Ret and Etv4 promote directed movements of progenitor cells during renal branching
  morphogenesis
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 14
year: '2016'
...
---
_id: '1489'
abstract:
- lang: eng
  text: 'We prove optimal local law, bulk universality and non-trivial decay for the
    off-diagonal elements of the resolvent for a class of translation invariant Gaussian
    random matrix ensembles with correlated entries. '
acknowledgement: Open access funding provided by Institute of Science and Technology
  (IST Austria). Oskari H. Ajanki was Partially supported by ERC Advanced Grant RANMAT
  No. 338804, and SFB-TR 12 Grant of the German Research Council. László Erdős was
  Partially supported by ERC Advanced Grant RANMAT No. 338804. Torben Krüger was Partially
  supported by ERC Advanced Grant RANMAT No. 338804, and SFB-TR 12 Grant of the German
  Research Council.
article_processing_charge: Yes (via OA deal)
author:
- first_name: Oskari H
  full_name: Ajanki, Oskari H
  id: 36F2FB7E-F248-11E8-B48F-1D18A9856A87
  last_name: Ajanki
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
  last_name: Erdös
  orcid: 0000-0001-5366-9603
- first_name: Torben H
  full_name: Krüger, Torben H
  id: 3020C786-F248-11E8-B48F-1D18A9856A87
  last_name: Krüger
  orcid: 0000-0002-4821-3297
citation:
  ama: Ajanki OH, Erdös L, Krüger TH. Local spectral statistics of Gaussian matrices
    with correlated entries. <i>Journal of Statistical Physics</i>. 2016;163(2):280-302.
    doi:<a href="https://doi.org/10.1007/s10955-016-1479-y">10.1007/s10955-016-1479-y</a>
  apa: Ajanki, O. H., Erdös, L., &#38; Krüger, T. H. (2016). Local spectral statistics
    of Gaussian matrices with correlated entries. <i>Journal of Statistical Physics</i>.
    Springer. <a href="https://doi.org/10.1007/s10955-016-1479-y">https://doi.org/10.1007/s10955-016-1479-y</a>
  chicago: Ajanki, Oskari H, László Erdös, and Torben H Krüger. “Local Spectral Statistics
    of Gaussian Matrices with Correlated Entries.” <i>Journal of Statistical Physics</i>.
    Springer, 2016. <a href="https://doi.org/10.1007/s10955-016-1479-y">https://doi.org/10.1007/s10955-016-1479-y</a>.
  ieee: O. H. Ajanki, L. Erdös, and T. H. Krüger, “Local spectral statistics of Gaussian
    matrices with correlated entries,” <i>Journal of Statistical Physics</i>, vol.
    163, no. 2. Springer, pp. 280–302, 2016.
  ista: Ajanki OH, Erdös L, Krüger TH. 2016. Local spectral statistics of Gaussian
    matrices with correlated entries. Journal of Statistical Physics. 163(2), 280–302.
  mla: Ajanki, Oskari H., et al. “Local Spectral Statistics of Gaussian Matrices with
    Correlated Entries.” <i>Journal of Statistical Physics</i>, vol. 163, no. 2, Springer,
    2016, pp. 280–302, doi:<a href="https://doi.org/10.1007/s10955-016-1479-y">10.1007/s10955-016-1479-y</a>.
  short: O.H. Ajanki, L. Erdös, T.H. Krüger, Journal of Statistical Physics 163 (2016)
    280–302.
corr_author: '1'
date_created: 2018-12-11T11:52:19Z
date_published: 2016-04-01T00:00:00Z
date_updated: 2025-09-18T11:17:50Z
day: '01'
ddc:
- '510'
department:
- _id: LaEr
doi: 10.1007/s10955-016-1479-y
ec_funded: 1
external_id:
  isi:
  - '000373132700003'
file:
- access_level: open_access
  checksum: 7139598dcb1cafbe6866bd2bfd732b33
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:11:16Z
  date_updated: 2020-07-14T12:44:57Z
  file_id: '4869'
  file_name: IST-2016-516-v1+1_s10955-016-1479-y.pdf
  file_size: 660602
  relation: main_file
file_date_updated: 2020-07-14T12:44:57Z
has_accepted_license: '1'
intvolume: '       163'
isi: 1
issue: '2'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 280 - 302
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '338804'
  name: Random matrices, universality and disordered quantum systems
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: Journal of Statistical Physics
publication_status: published
publisher: Springer
publist_id: '5698'
pubrep_id: '516'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Local spectral statistics of Gaussian matrices with correlated entries
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 163
year: '2016'
...
---
_id: '1490'
abstract:
- lang: eng
  text: To induce adaptive immunity, dendritic cells (DCs) migrate through afferent
    lymphatic vessels (LVs) to draining lymph nodes (dLNs). This process occurs in
    several consecutive steps. Upon entry into lymphatic capillaries, DCs first actively
    crawl into downstream collecting vessels. From there, they are next passively
    and rapidly transported to the dLN by lymph flow. Here, we describe a role for
    the chemokine CCL21 in intralymphatic DC crawling. Performing time-lapse imaging
    in murine skin, we found that blockade of CCL21-but not the absence of lymph flow-completely
    abolished DC migration from capillaries toward collecting vessels and reduced
    the ability of intralymphatic DCs to emigrate from skin. Moreover, we found that
    in vitro low laminar flow established a CCL21 gradient along lymphatic endothelial
    monolayers, thereby inducing downstream-directed DC migration. These findings
    reveal a role for intralymphatic CCL21 in promoting DC trafficking to dLNs, through
    the formation of a flow-induced gradient.
article_processing_charge: No
author:
- first_name: Erica
  full_name: Russo, Erica
  last_name: Russo
- first_name: Alvaro
  full_name: Teijeira, Alvaro
  last_name: Teijeira
- first_name: Kari
  full_name: Vaahtomeri, Kari
  id: 368EE576-F248-11E8-B48F-1D18A9856A87
  last_name: Vaahtomeri
  orcid: 0000-0001-7829-3518
- first_name: Ann
  full_name: Willrodt, Ann
  last_name: Willrodt
- first_name: Joël
  full_name: Bloch, Joël
  last_name: Bloch
- first_name: Maximilian
  full_name: Nitschké, Maximilian
  last_name: Nitschké
- first_name: Laura
  full_name: Santambrogio, Laura
  last_name: Santambrogio
- first_name: Dontscho
  full_name: Kerjaschki, Dontscho
  last_name: Kerjaschki
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
- first_name: Cornelia
  full_name: Halin, Cornelia
  last_name: Halin
citation:
  ama: Russo E, Teijeira A, Vaahtomeri K, et al. Intralymphatic CCL21 promotes tissue
    egress of dendritic cells through afferent lymphatic vessels. <i>Cell Reports</i>.
    2016;14(7):1723-1734. doi:<a href="https://doi.org/10.1016/j.celrep.2016.01.048">10.1016/j.celrep.2016.01.048</a>
  apa: Russo, E., Teijeira, A., Vaahtomeri, K., Willrodt, A., Bloch, J., Nitschké,
    M., … Halin, C. (2016). Intralymphatic CCL21 promotes tissue egress of dendritic
    cells through afferent lymphatic vessels. <i>Cell Reports</i>. Cell Press. <a
    href="https://doi.org/10.1016/j.celrep.2016.01.048">https://doi.org/10.1016/j.celrep.2016.01.048</a>
  chicago: Russo, Erica, Alvaro Teijeira, Kari Vaahtomeri, Ann Willrodt, Joël Bloch,
    Maximilian Nitschké, Laura Santambrogio, Dontscho Kerjaschki, Michael K Sixt,
    and Cornelia Halin. “Intralymphatic CCL21 Promotes Tissue Egress of Dendritic
    Cells through Afferent Lymphatic Vessels.” <i>Cell Reports</i>. Cell Press, 2016.
    <a href="https://doi.org/10.1016/j.celrep.2016.01.048">https://doi.org/10.1016/j.celrep.2016.01.048</a>.
  ieee: E. Russo <i>et al.</i>, “Intralymphatic CCL21 promotes tissue egress of dendritic
    cells through afferent lymphatic vessels,” <i>Cell Reports</i>, vol. 14, no. 7.
    Cell Press, pp. 1723–1734, 2016.
  ista: Russo E, Teijeira A, Vaahtomeri K, Willrodt A, Bloch J, Nitschké M, Santambrogio
    L, Kerjaschki D, Sixt MK, Halin C. 2016. Intralymphatic CCL21 promotes tissue
    egress of dendritic cells through afferent lymphatic vessels. Cell Reports. 14(7),
    1723–1734.
  mla: Russo, Erica, et al. “Intralymphatic CCL21 Promotes Tissue Egress of Dendritic
    Cells through Afferent Lymphatic Vessels.” <i>Cell Reports</i>, vol. 14, no. 7,
    Cell Press, 2016, pp. 1723–34, doi:<a href="https://doi.org/10.1016/j.celrep.2016.01.048">10.1016/j.celrep.2016.01.048</a>.
  short: E. Russo, A. Teijeira, K. Vaahtomeri, A. Willrodt, J. Bloch, M. Nitschké,
    L. Santambrogio, D. Kerjaschki, M.K. Sixt, C. Halin, Cell Reports 14 (2016) 1723–1734.
date_created: 2018-12-11T11:52:19Z
date_published: 2016-02-23T00:00:00Z
date_updated: 2025-09-18T11:16:44Z
day: '23'
ddc:
- '570'
department:
- _id: MiSi
doi: 10.1016/j.celrep.2016.01.048
external_id:
  isi:
  - '000370970200016'
file:
- access_level: open_access
  checksum: c98c1151d5f1e5ce1643a83d8d7f3c29
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:12:30Z
  date_updated: 2020-07-14T12:44:58Z
  file_id: '4948'
  file_name: IST-2016-515-v1+1_1-s2.0-S2211124716300262-main.pdf
  file_size: 5489897
  relation: main_file
file_date_updated: 2020-07-14T12:44:58Z
has_accepted_license: '1'
intvolume: '        14'
isi: 1
issue: '7'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 1723 - 1734
publication: Cell Reports
publication_status: published
publisher: Cell Press
publist_id: '5697'
pubrep_id: '515'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Intralymphatic CCL21 promotes tissue egress of dendritic cells through afferent
  lymphatic vessels
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 14
year: '2016'
...
---
_id: '1491'
abstract:
- lang: eng
  text: We study the ground state of a trapped Bose gas, starting from the full many-body
    Schrödinger Hamiltonian, and derive the non-linear Schrödinger energy functional
    in the limit of a large particle number, when the interaction potential converges
    slowly to a Dirac delta function. Our method is based on quantitative estimates
    on the discrepancy between the full many-body energy and its mean-field approximation
    using Hartree states. These are proved using finite dimensional localization and
    a quantitative version of the quantum de Finetti theorem. Our approach covers
    the case of attractive interactions in the regime of stability. In particular,
    our main new result is a derivation of the 2D attractive non-linear Schrödinger
    ground state.
acknowledgement: The authors acknowledge financial support from the European Research
  Council (FP7/2007-2013 Grant Agreement MNIQS 258023) and the ANR (Mathostaq project,
  ANR-13-JS01-0005-01). The second and third authors have benefited from the hospitality
  of the Institute for Mathematical Science of the National University of Singapore.
article_processing_charge: No
arxiv: 1
author:
- first_name: Mathieu
  full_name: Lewin, Mathieu
  last_name: Lewin
- first_name: Phan
  full_name: Nam, Phan
  id: 404092F4-F248-11E8-B48F-1D18A9856A87
  last_name: Nam
- first_name: Nicolas
  full_name: Rougerie, Nicolas
  last_name: Rougerie
citation:
  ama: Lewin M, Nam P, Rougerie N. The mean-field approximation and the non-linear
    Schrödinger functional for trapped Bose gases. <i>Transactions of the American
    Mathematical Society</i>. 2016;368(9):6131-6157. doi:<a href="https://doi.org/10.1090/tran/6537">10.1090/tran/6537</a>
  apa: Lewin, M., Nam, P., &#38; Rougerie, N. (2016). The mean-field approximation
    and the non-linear Schrödinger functional for trapped Bose gases. <i>Transactions
    of the American Mathematical Society</i>. American Mathematical Society. <a href="https://doi.org/10.1090/tran/6537">https://doi.org/10.1090/tran/6537</a>
  chicago: Lewin, Mathieu, Phan Nam, and Nicolas Rougerie. “The Mean-Field Approximation
    and the Non-Linear Schrödinger Functional for Trapped Bose Gases.” <i>Transactions
    of the American Mathematical Society</i>. American Mathematical Society, 2016.
    <a href="https://doi.org/10.1090/tran/6537">https://doi.org/10.1090/tran/6537</a>.
  ieee: M. Lewin, P. Nam, and N. Rougerie, “The mean-field approximation and the non-linear
    Schrödinger functional for trapped Bose gases,” <i>Transactions of the American
    Mathematical Society</i>, vol. 368, no. 9. American Mathematical Society, pp.
    6131–6157, 2016.
  ista: Lewin M, Nam P, Rougerie N. 2016. The mean-field approximation and the non-linear
    Schrödinger functional for trapped Bose gases. Transactions of the American Mathematical
    Society. 368(9), 6131–6157.
  mla: Lewin, Mathieu, et al. “The Mean-Field Approximation and the Non-Linear Schrödinger
    Functional for Trapped Bose Gases.” <i>Transactions of the American Mathematical
    Society</i>, vol. 368, no. 9, American Mathematical Society, 2016, pp. 6131–57,
    doi:<a href="https://doi.org/10.1090/tran/6537">10.1090/tran/6537</a>.
  short: M. Lewin, P. Nam, N. Rougerie, Transactions of the American Mathematical
    Society 368 (2016) 6131–6157.
date_created: 2018-12-11T11:52:20Z
date_published: 2016-01-01T00:00:00Z
date_updated: 2025-09-18T11:15:32Z
day: '01'
department:
- _id: RoSe
doi: 10.1090/tran/6537
external_id:
  arxiv:
  - '1405.3220'
  isi:
  - '000370726100004'
intvolume: '       368'
isi: 1
issue: '9'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1405.3220
month: '01'
oa: 1
oa_version: Submitted Version
page: 6131 - 6157
publication: Transactions of the American Mathematical Society
publication_status: published
publisher: American Mathematical Society
publist_id: '5692'
quality_controlled: '1'
scopus_import: '1'
status: public
title: The mean-field approximation and the non-linear Schrödinger functional for
  trapped Bose gases
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 368
year: '2016'
...
---
_id: '1492'
abstract:
- lang: eng
  text: To sustain a lifelong ability to initiate organs, plants retain pools of undifferentiated
    cells with a preserved prolif eration capacity. The root pericycle represents
    a unique tissue with conditional meristematic activity, and its tight control
    determines initiation of lateral organs. Here we show that the meristematic activity
    of the pericycle is constrained by the interaction with the adjacent endodermis.
    Release of these restraints by elimination of endo dermal cells by single-cell
    ablation triggers the pericycle to re-enter the cell cycle. We found that endodermis
    removal substitutes for the phytohormone auxin-dependent initiation of the pericycle
    meristematic activity. However, auxin is indispensable to steer the cell division
    plane orientation of new organ-defining divisions. We propose a dual, spatiotemporally
    distinct role for auxin during lateral root initiation. In the endodermis, auxin
    releases constraints arising from cell-to-cell interactions that compromise the
    pericycle meristematic activity, whereas, in the pericycle, auxin defines the
    orientation of the cell division plane to initiate lateral roots.
acknowledged_ssus:
- _id: LifeSc
acknowledgement: 'This work was supported by a European Research Council Starting
  Inde-pendent Research grant (ERC-2007-Stg-207362-HCPO to J.D.), Research Foundation-Flanders
  (G033711N to A.A.), and the Austrian Science Fund (FWF01_I1774S to E.B.). P.M. is
  indebted to the Federation of European Biochemical Sciences for a Long-Term Fellowship. '
article_processing_charge: No
author:
- first_name: Peter
  full_name: Marhavy, Peter
  id: 3F45B078-F248-11E8-B48F-1D18A9856A87
  last_name: Marhavy
  orcid: 0000-0001-5227-5741
- first_name: Juan C
  full_name: Montesinos López, Juan C
  id: 310A8E3E-F248-11E8-B48F-1D18A9856A87
  last_name: Montesinos López
  orcid: 0000-0001-9179-6099
- first_name: Anas
  full_name: Abuzeineh, Anas
  last_name: Abuzeineh
- first_name: Daniël
  full_name: Van Damme, Daniël
  last_name: Van Damme
- first_name: Joop
  full_name: Vermeer, Joop
  last_name: Vermeer
- first_name: Jérôme
  full_name: Duclercq, Jérôme
  last_name: Duclercq
- first_name: Hana
  full_name: Rakusova, Hana
  last_name: Rakusova
- first_name: Petra
  full_name: Marhavá, Petra
  id: 44E59624-F248-11E8-B48F-1D18A9856A87
  last_name: Marhavá
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Niko
  full_name: Geldner, Niko
  last_name: Geldner
- first_name: Eva
  full_name: Benková, Eva
  id: 38F4F166-F248-11E8-B48F-1D18A9856A87
  last_name: Benková
  orcid: 0000-0002-8510-9739
citation:
  ama: Marhavý P, Montesinos López JC, Abuzeineh A, et al. Targeted cell elimination
    reveals an auxin-guided biphasic mode of lateral root initiation. <i>Genes and
    Development</i>. 2016;30(4):471-483. doi:<a href="https://doi.org/10.1101/gad.276964.115">10.1101/gad.276964.115</a>
  apa: Marhavý, P., Montesinos López, J. C., Abuzeineh, A., Van Damme, D., Vermeer,
    J., Duclercq, J., … Benková, E. (2016). Targeted cell elimination reveals an auxin-guided
    biphasic mode of lateral root initiation. <i>Genes and Development</i>. Cold Spring
    Harbor Laboratory Press. <a href="https://doi.org/10.1101/gad.276964.115">https://doi.org/10.1101/gad.276964.115</a>
  chicago: Marhavý, Peter, Juan C Montesinos López, Anas Abuzeineh, Daniël Van Damme,
    Joop Vermeer, Jérôme Duclercq, Hana Rakusova, et al. “Targeted Cell Elimination
    Reveals an Auxin-Guided Biphasic Mode of Lateral Root Initiation.” <i>Genes and
    Development</i>. Cold Spring Harbor Laboratory Press, 2016. <a href="https://doi.org/10.1101/gad.276964.115">https://doi.org/10.1101/gad.276964.115</a>.
  ieee: P. Marhavý <i>et al.</i>, “Targeted cell elimination reveals an auxin-guided
    biphasic mode of lateral root initiation,” <i>Genes and Development</i>, vol.
    30, no. 4. Cold Spring Harbor Laboratory Press, pp. 471–483, 2016.
  ista: Marhavý P, Montesinos López JC, Abuzeineh A, Van Damme D, Vermeer J, Duclercq
    J, Rakusova H, Marhavá P, Friml J, Geldner N, Benková E. 2016. Targeted cell elimination
    reveals an auxin-guided biphasic mode of lateral root initiation. Genes and Development.
    30(4), 471–483.
  mla: Marhavý, Peter, et al. “Targeted Cell Elimination Reveals an Auxin-Guided Biphasic
    Mode of Lateral Root Initiation.” <i>Genes and Development</i>, vol. 30, no. 4,
    Cold Spring Harbor Laboratory Press, 2016, pp. 471–83, doi:<a href="https://doi.org/10.1101/gad.276964.115">10.1101/gad.276964.115</a>.
  short: P. Marhavý, J.C. Montesinos López, A. Abuzeineh, D. Van Damme, J. Vermeer,
    J. Duclercq, H. Rakusova, P. Marhavá, J. Friml, N. Geldner, E. Benková, Genes
    and Development 30 (2016) 471–483.
corr_author: '1'
date_created: 2018-12-11T11:52:20Z
date_published: 2016-03-01T00:00:00Z
date_updated: 2025-09-18T11:14:08Z
day: '01'
ddc:
- '570'
department:
- _id: EvBe
doi: 10.1101/gad.276964.115
external_id:
  isi:
  - '000370131500009'
  pmid:
  - '    26883363'
file:
- access_level: open_access
  checksum: ea394498ee56270e021d1028a29358a0
  content_type: application/pdf
  creator: kschuh
  date_created: 2019-01-25T09:56:11Z
  date_updated: 2020-07-14T12:44:58Z
  file_id: '5883'
  file_name: 2016_GeneDev_Marhavy.pdf
  file_size: 2757636
  relation: main_file
file_date_updated: 2020-07-14T12:44:58Z
has_accepted_license: '1'
intvolume: '        30'
isi: 1
issue: '4'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 471 - 483
pmid: 1
publication: Genes and Development
publication_status: published
publisher: Cold Spring Harbor Laboratory Press
publist_id: '5691'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Targeted cell elimination reveals an auxin-guided biphasic mode of lateral
  root initiation
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 30
year: '2016'
...
---
_id: '1493'
abstract:
- lang: eng
  text: We introduce a new method for deriving the time-dependent Hartree or Hartree-Fock
    equations as an effective mean-field dynamics from the microscopic Schrödinger
    equation for fermionic many-particle systems in quantum mechanics. The method
    is an adaption of the method used in Pickl (Lett. Math. Phys. 97 (2) 151–164 2011)
    for bosonic systems to fermionic systems. It is based on a Gronwall type estimate
    for a suitable measure of distance between the microscopic solution and an antisymmetrized
    product state. We use this method to treat a new mean-field limit for fermions
    with long-range interactions in a large volume. Some of our results hold for singular
    attractive or repulsive interactions. We can also treat Coulomb interaction assuming
    either a mild singularity cutoff or certain regularity conditions on the solutions
    to the Hartree(-Fock) equations. In the considered limit, the kinetic and interaction
    energy are of the same order, while the average force is subleading. For some
    interactions, we prove that the Hartree(-Fock) dynamics is a more accurate approximation
    than a simpler dynamics that one would expect from the subleading force. With
    our method we also treat the mean-field limit coupled to a semiclassical limit,
    which was discussed in the literature before, and we recover some of the previous
    results. All results hold for initial data close (but not necessarily equal) to
    antisymmetrized product states and we always provide explicit rates of convergence.
acknowledgement: 'Open access funding provided by Institute of Science and Technology
  (IST Austria). '
article_number: '3'
article_processing_charge: Yes (via OA deal)
author:
- first_name: Sören P
  full_name: Petrat, Sören P
  id: 40AC02DC-F248-11E8-B48F-1D18A9856A87
  last_name: Petrat
  orcid: 0000-0002-9166-5889
- first_name: Peter
  full_name: Pickl, Peter
  last_name: Pickl
citation:
  ama: Petrat SP, Pickl P. A new method and a new scaling for deriving fermionic mean-field
    dynamics. <i>Mathematical Physics, Analysis and Geometry</i>. 2016;19(1). doi:<a
    href="https://doi.org/10.1007/s11040-016-9204-2">10.1007/s11040-016-9204-2</a>
  apa: Petrat, S. P., &#38; Pickl, P. (2016). A new method and a new scaling for deriving
    fermionic mean-field dynamics. <i>Mathematical Physics, Analysis and Geometry</i>.
    Springer. <a href="https://doi.org/10.1007/s11040-016-9204-2">https://doi.org/10.1007/s11040-016-9204-2</a>
  chicago: Petrat, Sören P, and Peter Pickl. “A New Method and a New Scaling for Deriving
    Fermionic Mean-Field Dynamics.” <i>Mathematical Physics, Analysis and Geometry</i>.
    Springer, 2016. <a href="https://doi.org/10.1007/s11040-016-9204-2">https://doi.org/10.1007/s11040-016-9204-2</a>.
  ieee: S. P. Petrat and P. Pickl, “A new method and a new scaling for deriving fermionic
    mean-field dynamics,” <i>Mathematical Physics, Analysis and Geometry</i>, vol.
    19, no. 1. Springer, 2016.
  ista: Petrat SP, Pickl P. 2016. A new method and a new scaling for deriving fermionic
    mean-field dynamics. Mathematical Physics, Analysis and Geometry. 19(1), 3.
  mla: Petrat, Sören P., and Peter Pickl. “A New Method and a New Scaling for Deriving
    Fermionic Mean-Field Dynamics.” <i>Mathematical Physics, Analysis and Geometry</i>,
    vol. 19, no. 1, 3, Springer, 2016, doi:<a href="https://doi.org/10.1007/s11040-016-9204-2">10.1007/s11040-016-9204-2</a>.
  short: S.P. Petrat, P. Pickl, Mathematical Physics, Analysis and Geometry 19 (2016).
corr_author: '1'
date_created: 2018-12-11T11:52:20Z
date_published: 2016-03-01T00:00:00Z
date_updated: 2025-09-18T11:12:46Z
day: '01'
ddc:
- '510'
- '530'
department:
- _id: RoSe
doi: 10.1007/s11040-016-9204-2
ec_funded: 1
external_id:
  isi:
  - '000374267300003'
file:
- access_level: open_access
  checksum: eb5d2145ef0d377c4f78bf06e18f4529
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:16:55Z
  date_updated: 2020-07-14T12:44:58Z
  file_id: '5246'
  file_name: IST-2016-514-v1+1_s11040-016-9204-2.pdf
  file_size: 911310
  relation: main_file
file_date_updated: 2020-07-14T12:44:58Z
has_accepted_license: '1'
intvolume: '        19'
isi: 1
issue: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: Mathematical Physics, Analysis and Geometry
publication_status: published
publisher: Springer
publist_id: '5690'
pubrep_id: '514'
quality_controlled: '1'
scopus_import: '1'
status: public
title: A new method and a new scaling for deriving fermionic mean-field dynamics
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 19
year: '2016'
...
---
_id: '1494'
abstract:
- lang: eng
  text: Turbulence is one of the most frequently encountered non-equilibrium phenomena
    in nature, yet characterizing the transition that gives rise to turbulence in
    basic shear flows has remained an elusive task. Although, in recent studies, critical
    points marking the onset of sustained turbulence have been determined for several
    such flows, the physical nature of the transition could not be fully explained.
    In extensive experimental and computational studies we show for the example of
    Couette flow that the onset of turbulence is a second-order phase transition and
    falls into the directed percolation universality class. Consequently, the complex
    laminar–turbulent patterns distinctive for the onset of turbulence in shear flows
    result from short-range interactions of turbulent domains and are characterized
    by universal critical exponents. More generally, our study demonstrates that even
    high-dimensional systems far from equilibrium such as turbulence exhibit universality
    at onset and that here the collective dynamics obeys simple rules.
acknowledgement: We thank P. Maier for providing valuable ideas and supporting us
  in the technical aspects. Discussions with D. Barkley, Y. Duguet, B. Eckhart, N.
  Goldenfeld, P. Manneville and K. Takeuchi are gratefully acknowledged. We acknowledge
  the Deutsche Forschungsgemeinschaft (Project No. FOR 1182), and the European Research
  Council under the European Union’s Seventh Framework Programme (FP/2007-2013)/ERC
  Grant Agreement 306589 for financial support. L.S. and B.H. acknowledge research
  funding by Deutsche Forschungsgemeinschaft (DFG) under Grant No. SFB 963/1 (project
  A8). Numerical simulations were performed thanks to the CPU time allocations of
  JUROPA in Juelich Supercomputing Center (project HGU17) and of the Max Planck Computing
  and Data Facility (Garching, Germany). Excellent technical support from M. Rampp
  on the hybrid code nsCouette is appreciated.
article_processing_charge: No
author:
- first_name: Grégoire M
  full_name: Lemoult, Grégoire M
  id: 4787FE80-F248-11E8-B48F-1D18A9856A87
  last_name: Lemoult
- first_name: Liang
  full_name: Shi, Liang
  id: 374A3F1A-F248-11E8-B48F-1D18A9856A87
  last_name: Shi
- first_name: Kerstin
  full_name: Avila, Kerstin
  last_name: Avila
- first_name: Shreyas V
  full_name: Jalikop, Shreyas V
  id: 44A1D772-F248-11E8-B48F-1D18A9856A87
  last_name: Jalikop
- first_name: Marc
  full_name: Avila, Marc
  last_name: Avila
- first_name: Björn
  full_name: Hof, Björn
  id: 3A374330-F248-11E8-B48F-1D18A9856A87
  last_name: Hof
  orcid: 0000-0003-2057-2754
citation:
  ama: Lemoult GM, Shi L, Avila K, Jalikop SV, Avila M, Hof B. Directed percolation
    phase transition to sustained turbulence in Couette flow. <i>Nature Physics</i>.
    2016;12(3):254-258. doi:<a href="https://doi.org/10.1038/nphys3675">10.1038/nphys3675</a>
  apa: Lemoult, G. M., Shi, L., Avila, K., Jalikop, S. V., Avila, M., &#38; Hof, B.
    (2016). Directed percolation phase transition to sustained turbulence in Couette
    flow. <i>Nature Physics</i>. Nature Publishing Group. <a href="https://doi.org/10.1038/nphys3675">https://doi.org/10.1038/nphys3675</a>
  chicago: Lemoult, Grégoire M, Liang Shi, Kerstin Avila, Shreyas V Jalikop, Marc
    Avila, and Björn Hof. “Directed Percolation Phase Transition to Sustained Turbulence
    in Couette Flow.” <i>Nature Physics</i>. Nature Publishing Group, 2016. <a href="https://doi.org/10.1038/nphys3675">https://doi.org/10.1038/nphys3675</a>.
  ieee: G. M. Lemoult, L. Shi, K. Avila, S. V. Jalikop, M. Avila, and B. Hof, “Directed
    percolation phase transition to sustained turbulence in Couette flow,” <i>Nature
    Physics</i>, vol. 12, no. 3. Nature Publishing Group, pp. 254–258, 2016.
  ista: Lemoult GM, Shi L, Avila K, Jalikop SV, Avila M, Hof B. 2016. Directed percolation
    phase transition to sustained turbulence in Couette flow. Nature Physics. 12(3),
    254–258.
  mla: Lemoult, Grégoire M., et al. “Directed Percolation Phase Transition to Sustained
    Turbulence in Couette Flow.” <i>Nature Physics</i>, vol. 12, no. 3, Nature Publishing
    Group, 2016, pp. 254–58, doi:<a href="https://doi.org/10.1038/nphys3675">10.1038/nphys3675</a>.
  short: G.M. Lemoult, L. Shi, K. Avila, S.V. Jalikop, M. Avila, B. Hof, Nature Physics
    12 (2016) 254–258.
date_created: 2018-12-11T11:52:21Z
date_published: 2016-02-15T00:00:00Z
date_updated: 2025-09-18T11:11:31Z
day: '15'
department:
- _id: BjHo
doi: 10.1038/nphys3675
ec_funded: 1
external_id:
  isi:
  - '000371505200019'
intvolume: '        12'
isi: 1
issue: '3'
language:
- iso: eng
month: '02'
oa_version: None
page: 254 - 258
project:
- _id: 25152F3A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '306589'
  name: Decoding the complexity of turbulence at its origin
- _id: 2511D90C-B435-11E9-9278-68D0E5697425
  grant_number: SFB 963  TP A8
  name: Astrophysical instability of currents and turbulences
publication: Nature Physics
publication_status: published
publisher: Nature Publishing Group
publist_id: '5685'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Directed percolation phase transition to sustained turbulence in Couette flow
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 12
year: '2016'
...
---
_id: '1496'
abstract:
- lang: eng
  text: The two-photon 1s2 2s 2p 3P0 1s22s2 1S0 transition in berylliumlike ions is
    theoretically investigated within a fully relativistic framework and a second-order
    perturbation theory. We focus our analysis on how electron correlation, as well
    as the negative-energy spectrum, can affect the forbidden E1M1 decay rate. For
    this purpose, we include the electronic correlation via an effective local potential
    and within a single configuration-state model. Due to its experimental interest,
    evaluations of decay rates are performed for berylliumlike xenon and uranium.
    We find that the negative-energy contribution can be neglected at the present
    level of accuracy in the evaluation of the decay rate. On the other hand, if contributions
    of electronic correlation are not carefully taken into account, it may change
    the lifetime of the metastable state by up to 20%. By performing a full-relativistic
    jj-coupling calculation, we found a decrease of the decay rate by two orders of
    magnitude compared to non-relativistic LS-coupling calculations, for the selected
    heavy ions.
acknowledgement: 'This  research  was  supported  in  part  by  FCT, Portugal, through
  Project No. PTDC/FIS/117606/2010, financed by the European Community  Fund  FEDER  through  the  COMPETE. '
article_number: '032502'
article_processing_charge: No
arxiv: 1
author:
- first_name: Pedro
  full_name: Amaro, Pedro
  last_name: Amaro
- first_name: Filippo
  full_name: Fratini, Filippo
  last_name: Fratini
- first_name: Laleh
  full_name: Safari, Laleh
  id: 3C325E5E-F248-11E8-B48F-1D18A9856A87
  last_name: Safari
- first_name: Jorge
  full_name: Machado, Jorge
  last_name: Machado
- first_name: Mauro
  full_name: Guerra, Mauro
  last_name: Guerra
- first_name: Paul
  full_name: Indelicato, Paul
  last_name: Indelicato
- first_name: José
  full_name: Santos, José
  last_name: Santos
citation:
  ama: Amaro P, Fratini F, Safari L, et al. Relativistic evaluation of the two-photon
    decay of the metastable 1s22s2p3P0 state in berylliumlike ions with an effective-potential
    model. <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>. 2016;93(3).
    doi:<a href="https://doi.org/10.1103/PhysRevA.93.032502">10.1103/PhysRevA.93.032502</a>
  apa: Amaro, P., Fratini, F., Safari, L., Machado, J., Guerra, M., Indelicato, P.,
    &#38; Santos, J. (2016). Relativistic evaluation of the two-photon decay of the
    metastable 1s22s2p3P0 state in berylliumlike ions with an effective-potential
    model. <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>. American
    Physical Society. <a href="https://doi.org/10.1103/PhysRevA.93.032502">https://doi.org/10.1103/PhysRevA.93.032502</a>
  chicago: Amaro, Pedro, Filippo Fratini, Laleh Safari, Jorge Machado, Mauro Guerra,
    Paul Indelicato, and José Santos. “Relativistic Evaluation of the Two-Photon Decay
    of the Metastable 1s22s2p3P0 State in Berylliumlike Ions with an Effective-Potential
    Model.” <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>. American
    Physical Society, 2016. <a href="https://doi.org/10.1103/PhysRevA.93.032502">https://doi.org/10.1103/PhysRevA.93.032502</a>.
  ieee: P. Amaro <i>et al.</i>, “Relativistic evaluation of the two-photon decay of
    the metastable 1s22s2p3P0 state in berylliumlike ions with an effective-potential
    model,” <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>, vol.
    93, no. 3. American Physical Society, 2016.
  ista: Amaro P, Fratini F, Safari L, Machado J, Guerra M, Indelicato P, Santos J.
    2016. Relativistic evaluation of the two-photon decay of the metastable 1s22s2p3P0
    state in berylliumlike ions with an effective-potential model. Physical Review
    A - Atomic, Molecular, and Optical Physics. 93(3), 032502.
  mla: Amaro, Pedro, et al. “Relativistic Evaluation of the Two-Photon Decay of the
    Metastable 1s22s2p3P0 State in Berylliumlike Ions with an Effective-Potential
    Model.” <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>, vol.
    93, no. 3, 032502, American Physical Society, 2016, doi:<a href="https://doi.org/10.1103/PhysRevA.93.032502">10.1103/PhysRevA.93.032502</a>.
  short: P. Amaro, F. Fratini, L. Safari, J. Machado, M. Guerra, P. Indelicato, J.
    Santos, Physical Review A - Atomic, Molecular, and Optical Physics 93 (2016).
date_created: 2018-12-11T11:52:21Z
date_published: 2016-03-07T00:00:00Z
date_updated: 2025-09-18T11:10:38Z
day: '07'
department:
- _id: MiLe
doi: 10.1103/PhysRevA.93.032502
ec_funded: 1
external_id:
  arxiv:
  - '1508.06169'
  isi:
  - '000371724100008'
intvolume: '        93'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1508.06169
month: '03'
oa: 1
oa_version: Preprint
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Physical Review A - Atomic, Molecular, and Optical Physics
publication_status: published
publisher: American Physical Society
publist_id: '5683'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Relativistic evaluation of the two-photon decay of the metastable 1s22s2p3P0
  state in berylliumlike ions with an effective-potential model
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 93
year: '2016'
...
---
_id: '1518'
abstract:
- lang: eng
  text: The inference of demographic history from genome data is hindered by a lack
    of efficient computational approaches. In particular, it has proved difficult
    to exploit the information contained in the distribution of genealogies across
    the genome. We have previously shown that the generating function (GF) of genealogies
    can be used to analytically compute likelihoods of demographic models from configurations
    of mutations in short sequence blocks (Lohse et al. 2011). Although the GF has
    a simple, recursive form, the size of such likelihood calculations explodes quickly
    with the number of individuals and applications of this framework have so far
    been mainly limited to small samples (pairs and triplets) for which the GF can
    be written by hand. Here we investigate several strategies for exploiting the
    inherent symmetries of the coalescent. In particular, we show that the GF of genealogies
    can be decomposed into a set of equivalence classes that allows likelihood calculations
    from nontrivial samples. Using this strategy, we automated blockwise likelihood
    calculations for a general set of demographic scenarios in Mathematica. These
    histories may involve population size changes, continuous migration, discrete
    divergence, and admixture between multiple populations. To give a concrete example,
    we calculate the likelihood for a model of isolation with migration (IM), assuming
    two diploid samples without phase and outgroup information. We demonstrate the
    new inference scheme with an analysis of two individual butterfly genomes from
    the sister species Heliconius melpomene rosina and H. cydno.
acknowledgement: "We thank Lynsey Bunnefeld for discussions throughout the project
  and Joshua Schraiber and one anonymous reviewer\r\nfor constructive comments on
  an earlier version of this manuscript. This work was supported by funding from the\r\nUnited
  Kingdom Natural Environment Research Council (to K.L.) (NE/I020288/1) and a grant
  from the European\r\nResearch Council (250152) (to N.H.B.)."
article_processing_charge: No
article_type: original
author:
- first_name: Konrad
  full_name: Lohse, Konrad
  last_name: Lohse
- first_name: Martin
  full_name: Chmelik, Martin
  id: 3624234E-F248-11E8-B48F-1D18A9856A87
  last_name: Chmelik
- first_name: Simon
  full_name: Martin, Simon
  last_name: Martin
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: Lohse K, Chmelik M, Martin S, Barton NH. Efficient strategies for calculating
    blockwise likelihoods under the coalescent. <i>Genetics</i>. 2016;202(2):775-786.
    doi:<a href="https://doi.org/10.1534/genetics.115.183814">10.1534/genetics.115.183814</a>
  apa: Lohse, K., Chmelik, M., Martin, S., &#38; Barton, N. H. (2016). Efficient strategies
    for calculating blockwise likelihoods under the coalescent. <i>Genetics</i>. Genetics
    Society of America. <a href="https://doi.org/10.1534/genetics.115.183814">https://doi.org/10.1534/genetics.115.183814</a>
  chicago: Lohse, Konrad, Martin Chmelik, Simon Martin, and Nicholas H Barton. “Efficient
    Strategies for Calculating Blockwise Likelihoods under the Coalescent.” <i>Genetics</i>.
    Genetics Society of America, 2016. <a href="https://doi.org/10.1534/genetics.115.183814">https://doi.org/10.1534/genetics.115.183814</a>.
  ieee: K. Lohse, M. Chmelik, S. Martin, and N. H. Barton, “Efficient strategies for
    calculating blockwise likelihoods under the coalescent,” <i>Genetics</i>, vol.
    202, no. 2. Genetics Society of America, pp. 775–786, 2016.
  ista: Lohse K, Chmelik M, Martin S, Barton NH. 2016. Efficient strategies for calculating
    blockwise likelihoods under the coalescent. Genetics. 202(2), 775–786.
  mla: Lohse, Konrad, et al. “Efficient Strategies for Calculating Blockwise Likelihoods
    under the Coalescent.” <i>Genetics</i>, vol. 202, no. 2, Genetics Society of America,
    2016, pp. 775–86, doi:<a href="https://doi.org/10.1534/genetics.115.183814">10.1534/genetics.115.183814</a>.
  short: K. Lohse, M. Chmelik, S. Martin, N.H. Barton, Genetics 202 (2016) 775–786.
date_created: 2018-12-11T11:52:29Z
date_published: 2016-02-01T00:00:00Z
date_updated: 2025-09-18T11:09:34Z
day: '01'
ddc:
- '570'
department:
- _id: KrCh
- _id: NiBa
doi: 10.1534/genetics.115.183814
ec_funded: 1
external_id:
  isi:
  - '000371304600032'
  pmid:
  - '26715666'
file:
- access_level: open_access
  checksum: 41c9b5d72e7fe4624dd22dfe622337d5
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:16:51Z
  date_updated: 2020-07-14T12:45:00Z
  file_id: '5241'
  file_name: IST-2016-561-v1+1_Lohse_et_al_Genetics_2015.pdf
  file_size: 957466
  relation: main_file
file_date_updated: 2020-07-14T12:45:00Z
has_accepted_license: '1'
intvolume: '       202'
isi: 1
issue: '2'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Preprint
page: 775 - 786
pmid: 1
project:
- _id: 25B07788-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '250152'
  name: Limits to selection in biology and in evolutionary computation
publication: Genetics
publication_status: published
publisher: Genetics Society of America
publist_id: '5658'
pubrep_id: '561'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Efficient strategies for calculating blockwise likelihoods under the coalescent
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 202
year: '2016'
...
---
_id: '1521'
abstract:
- lang: eng
  text: Complex I (NADH:ubiquinone oxidoreductase) plays a central role in cellular
    energy production, coupling electron transfer between NADH and quinone to proton
    translocation. It is the largest protein assembly of respiratory chains and one
    of the most elaborate redox membrane proteins known. Bacterial enzyme is about
    half the size of mitochondrial and thus provides its important &quot;minimal&quot;
    model. Dysfunction of mitochondrial complex I is implicated in many human neurodegenerative
    diseases. The L-shaped complex consists of a hydrophilic arm, where electron transfer
    occurs, and a membrane arm, where proton translocation takes place. We have solved
    the crystal structures of the hydrophilic domain of complex I from Thermus thermophilus,
    the membrane domain from Escherichia coli and recently of the intact, entire complex
    I from T. thermophilus (536. kDa, 16 subunits, 9 iron-sulphur clusters, 64 transmembrane
    helices). The 95. Å long electron transfer pathway through the enzyme proceeds
    from the primary electron acceptor flavin mononucleotide through seven conserved
    Fe-S clusters to the unusual elongated quinone-binding site at the interface with
    the membrane domain. Four putative proton translocation channels are found in
    the membrane domain, all linked by the central flexible axis containing charged
    residues. The redox energy of electron transfer is coupled to proton translocation
    by the as yet undefined mechanism proposed to involve long-range conformational
    changes. This article is part of a Special Issue entitled Respiratory complex
    I, edited by Volker Zickermann and Ulrich Brandt.
acknowledgement: funded by the Medical Research Council (Grant number MC_U105674180)
article_processing_charge: No
author:
- first_name: John
  full_name: Berrisford, John
  last_name: Berrisford
- first_name: Rozbeh
  full_name: Baradaran, Rozbeh
  last_name: Baradaran
- first_name: Leonid A
  full_name: Sazanov, Leonid A
  id: 338D39FE-F248-11E8-B48F-1D18A9856A87
  last_name: Sazanov
  orcid: 0000-0002-0977-7989
citation:
  ama: Berrisford J, Baradaran R, Sazanov LA. Structure of bacterial respiratory complex
    I. <i>Biochimica et Biophysica Acta - Bioenergetics</i>. 2016;1857(7):892-901.
    doi:<a href="https://doi.org/10.1016/j.bbabio.2016.01.012">10.1016/j.bbabio.2016.01.012</a>
  apa: Berrisford, J., Baradaran, R., &#38; Sazanov, L. A. (2016). Structure of bacterial
    respiratory complex I. <i>Biochimica et Biophysica Acta - Bioenergetics</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.bbabio.2016.01.012">https://doi.org/10.1016/j.bbabio.2016.01.012</a>
  chicago: Berrisford, John, Rozbeh Baradaran, and Leonid A Sazanov. “Structure of
    Bacterial Respiratory Complex I.” <i>Biochimica et Biophysica Acta - Bioenergetics</i>.
    Elsevier, 2016. <a href="https://doi.org/10.1016/j.bbabio.2016.01.012">https://doi.org/10.1016/j.bbabio.2016.01.012</a>.
  ieee: J. Berrisford, R. Baradaran, and L. A. Sazanov, “Structure of bacterial respiratory
    complex I,” <i>Biochimica et Biophysica Acta - Bioenergetics</i>, vol. 1857, no.
    7. Elsevier, pp. 892–901, 2016.
  ista: Berrisford J, Baradaran R, Sazanov LA. 2016. Structure of bacterial respiratory
    complex I. Biochimica et Biophysica Acta - Bioenergetics. 1857(7), 892–901.
  mla: Berrisford, John, et al. “Structure of Bacterial Respiratory Complex I.” <i>Biochimica
    et Biophysica Acta - Bioenergetics</i>, vol. 1857, no. 7, Elsevier, 2016, pp.
    892–901, doi:<a href="https://doi.org/10.1016/j.bbabio.2016.01.012">10.1016/j.bbabio.2016.01.012</a>.
  short: J. Berrisford, R. Baradaran, L.A. Sazanov, Biochimica et Biophysica Acta
    - Bioenergetics 1857 (2016) 892–901.
corr_author: '1'
date_created: 2018-12-11T11:52:30Z
date_published: 2016-07-01T00:00:00Z
date_updated: 2025-09-18T11:08:50Z
day: '01'
department:
- _id: LeSa
doi: 10.1016/j.bbabio.2016.01.012
external_id:
  isi:
  - '000377727500005'
intvolume: '      1857'
isi: 1
issue: '7'
language:
- iso: eng
month: '07'
oa_version: None
page: 892 - 901
publication: Biochimica et Biophysica Acta - Bioenergetics
publication_status: published
publisher: Elsevier
publist_id: '5654'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Structure of bacterial respiratory complex I
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 1857
year: '2016'
...
---
_id: '1522'
abstract:
- lang: eng
  text: 'We classify smooth Brunnian (i.e., unknotted on both components) embeddings
    (S2 × S1) ⊔ S3 → ℝ6. Any Brunnian embedding (S2 × S1) ⊔ S3 → ℝ6 is isotopic to
    an explicitly constructed embedding fk,m,n for some integers k, m, n such that
    m ≡ n (mod 2). Two embeddings fk,m,n and fk′ ,m′,n′ are isotopic if and only if
    k = k′, m ≡ m′ (mod 2k) and n ≡ n′ (mod 2k). We use Haefliger’s classification
    of embeddings S3 ⊔ S3 → ℝ6 in our proof. The relation between the embeddings (S2
    × S1) ⊔ S3 → ℝ6 and S3 ⊔ S3 → ℝ6 is not trivial, however. For example, we show
    that there exist embeddings f: (S2 ×S1) ⊔ S3 → ℝ6 and g, g′ : S3 ⊔ S3 → ℝ6 such
    that the componentwise embedded connected sum f # g is isotopic to f # g′ but
    g is not isotopic to g′.'
acknowledgement: "I thank A. Skopenkov for telling me about the problem and for his
  useful remarks.  I also thank A. Sossinsky,\r\nA. Zhubr, M. Skopenkov, P. Akhmetiev,
  and an anonymous referee for their feedback.  Author was partially\r\nsupported
  by Dobrushin fellowship, 2013, and by RFBR grant 15-01-06302."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Serhii
  full_name: Avvakumov, Serhii
  id: 3827DAC8-F248-11E8-B48F-1D18A9856A87
  last_name: Avvakumov
citation:
  ama: Avvakumov S. The classification of certain linked 3-manifolds in 6-space. <i>Moscow
    Mathematical Journal</i>. 2016;16(1):1-25. doi:<a href="https://doi.org/10.17323/1609-4514-2016-16-1-1-25">10.17323/1609-4514-2016-16-1-1-25</a>
  apa: Avvakumov, S. (2016). The classification of certain linked 3-manifolds in 6-space.
    <i>Moscow Mathematical Journal</i>. Independent University of Moscow. <a href="https://doi.org/10.17323/1609-4514-2016-16-1-1-25">https://doi.org/10.17323/1609-4514-2016-16-1-1-25</a>
  chicago: Avvakumov, Sergey. “The Classification of Certain Linked 3-Manifolds in
    6-Space.” <i>Moscow Mathematical Journal</i>. Independent University of Moscow,
    2016. <a href="https://doi.org/10.17323/1609-4514-2016-16-1-1-25">https://doi.org/10.17323/1609-4514-2016-16-1-1-25</a>.
  ieee: S. Avvakumov, “The classification of certain linked 3-manifolds in 6-space,”
    <i>Moscow Mathematical Journal</i>, vol. 16, no. 1. Independent University of
    Moscow, pp. 1–25, 2016.
  ista: Avvakumov S. 2016. The classification of certain linked 3-manifolds in 6-space.
    Moscow Mathematical Journal. 16(1), 1–25.
  mla: Avvakumov, Sergey. “The Classification of Certain Linked 3-Manifolds in 6-Space.”
    <i>Moscow Mathematical Journal</i>, vol. 16, no. 1, Independent University of
    Moscow, 2016, pp. 1–25, doi:<a href="https://doi.org/10.17323/1609-4514-2016-16-1-1-25">10.17323/1609-4514-2016-16-1-1-25</a>.
  short: S. Avvakumov, Moscow Mathematical Journal 16 (2016) 1–25.
corr_author: '1'
date_created: 2018-12-11T11:52:30Z
date_published: 2016-01-01T00:00:00Z
date_updated: 2024-10-09T20:56:44Z
day: '01'
department:
- _id: UlWa
doi: 10.17323/1609-4514-2016-16-1-1-25
external_id:
  arxiv:
  - '1408.3918'
intvolume: '        16'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1408.3918
month: '01'
oa: 1
oa_version: Preprint
page: 1 - 25
publication: Moscow Mathematical Journal
publication_identifier:
  eissn:
  - 1609-4514
publication_status: published
publisher: Independent University of Moscow
publist_id: '5652'
quality_controlled: '1'
scopus_import: '1'
status: public
title: The classification of certain linked 3-manifolds in 6-space
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2016'
...
---
_id: '1523'
abstract:
- lang: eng
  text: For random graphs, the containment problem considers the probability that
    a binomial random graph G(n, p) contains a given graph as a substructure. When
    asking for the graph as a topological minor, i.e., for a copy of a subdivision
    of the given graph, it is well known that the (sharp) threshold is at p = 1/n.
    We consider a natural analogue of this question for higher-dimensional random
    complexes Xk(n, p), first studied by Cohen, Costa, Farber and Kappeler for k =
    2. Improving previous results, we show that p = Θ(1/ √n) is the (coarse) threshold
    for containing a subdivision of any fixed complete 2-complex. For higher dimensions
    k &gt; 2, we get that p = O(n−1/k) is an upper bound for the threshold probability
    of containing a subdivision of a fixed k-dimensional complex.
acknowledgement: This research was supported by the Swiss National Science Foundation
  (SNF Projects 200021-125309 and 200020-138230
article_processing_charge: No
arxiv: 1
author:
- first_name: Anna
  full_name: Gundert, Anna
  last_name: Gundert
- first_name: Uli
  full_name: Wagner, Uli
  id: 36690CA2-F248-11E8-B48F-1D18A9856A87
  last_name: Wagner
  orcid: 0000-0002-1494-0568
citation:
  ama: Gundert A, Wagner U. On topological minors in random simplicial complexes.
    <i>Proceedings of the American Mathematical Society</i>. 2016;144(4):1815-1828.
    doi:<a href="https://doi.org/10.1090/proc/12824">10.1090/proc/12824</a>
  apa: Gundert, A., &#38; Wagner, U. (2016). On topological minors in random simplicial
    complexes. <i>Proceedings of the American Mathematical Society</i>. American Mathematical
    Society. <a href="https://doi.org/10.1090/proc/12824">https://doi.org/10.1090/proc/12824</a>
  chicago: Gundert, Anna, and Uli Wagner. “On Topological Minors in Random Simplicial
    Complexes.” <i>Proceedings of the American Mathematical Society</i>. American
    Mathematical Society, 2016. <a href="https://doi.org/10.1090/proc/12824">https://doi.org/10.1090/proc/12824</a>.
  ieee: A. Gundert and U. Wagner, “On topological minors in random simplicial complexes,”
    <i>Proceedings of the American Mathematical Society</i>, vol. 144, no. 4. American
    Mathematical Society, pp. 1815–1828, 2016.
  ista: Gundert A, Wagner U. 2016. On topological minors in random simplicial complexes.
    Proceedings of the American Mathematical Society. 144(4), 1815–1828.
  mla: Gundert, Anna, and Uli Wagner. “On Topological Minors in Random Simplicial
    Complexes.” <i>Proceedings of the American Mathematical Society</i>, vol. 144,
    no. 4, American Mathematical Society, 2016, pp. 1815–28, doi:<a href="https://doi.org/10.1090/proc/12824">10.1090/proc/12824</a>.
  short: A. Gundert, U. Wagner, Proceedings of the American Mathematical Society 144
    (2016) 1815–1828.
corr_author: '1'
date_created: 2018-12-11T11:52:30Z
date_published: 2016-04-01T00:00:00Z
date_updated: 2025-09-18T11:07:39Z
day: '01'
department:
- _id: UlWa
doi: 10.1090/proc/12824
external_id:
  arxiv:
  - '1404.2106'
  isi:
  - '000369298400040'
intvolume: '       144'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1404.2106
month: '04'
oa: 1
oa_version: Preprint
page: 1815 - 1828
publication: Proceedings of the American Mathematical Society
publication_status: published
publisher: American Mathematical Society
publist_id: '5650'
quality_controlled: '1'
scopus_import: '1'
status: public
title: On topological minors in random simplicial complexes
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 144
year: '2016'
...
---
_id: '1524'
abstract:
- lang: eng
  text: "When designing genetic circuits, the typical primitives used in major existing
    modelling formalisms are gene interaction graphs, where edges between genes denote
    either an activation or inhibition relation. However, when designing experiments,
    it is important to be precise about the low-level mechanistic details as to how
    each such relation is implemented. The rule-based modelling language Kappa allows
    to unambiguously specify mechanistic details such as DNA binding sites, dimerisation
    of transcription factors, or co-operative interactions. Such a detailed description
    comes with complexity and computationally costly executions. We propose a general
    method for automatically transforming a rule-based program, by eliminating intermediate
    species and adjusting the rate constants accordingly. To the best of our knowledge,
    we show the first automated reduction of rule-based models based on equilibrium
    approximations.\r\nOur algorithm is an adaptation of an existing algorithm, which
    was designed for reducing reaction-based programs; our version of the algorithm
    scans the rule-based Kappa model in search for those interaction patterns known
    to be amenable to equilibrium approximations (e.g. Michaelis-Menten scheme). Additional
    checks are then performed in order to verify if the reduction is meaningful in
    the context of the full model. The reduced model is efficiently obtained by static
    inspection over the rule-set. The tool is tested on a detailed rule-based model
    of a λ-phage switch, which lists 92 rules and 13 agents. The reduced model has
    11 rules and 5 agents, and provides a dramatic reduction in simulation time of
    several orders of magnitude."
acknowledgement: This research was supported by the People Programme (Marie Curie
  Actions) of the European Union’s Seventh Framework Programme (FP7/2007-2013) under
  REA grant agreement no. 291734, and the SNSF Early Postdoc.Mobility Fellowship,
  the grant number P2EZP2_148797.
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Andreea
  full_name: Beica, Andreea
  last_name: Beica
- first_name: Calin C
  full_name: Guet, Calin C
  id: 47F8433E-F248-11E8-B48F-1D18A9856A87
  last_name: Guet
  orcid: 0000-0001-6220-2052
- first_name: Tatjana
  full_name: Petrov, Tatjana
  id: 3D5811FC-F248-11E8-B48F-1D18A9856A87
  last_name: Petrov
  orcid: 0000-0002-9041-0905
citation:
  ama: 'Beica A, Guet CC, Petrov T. Efficient reduction of kappa models by static
    inspection of the rule-set. In: Vol 9271. Springer; 2016:173-191. doi:<a href="https://doi.org/10.1007/978-3-319-26916-0_10">10.1007/978-3-319-26916-0_10</a>'
  apa: 'Beica, A., Guet, C. C., &#38; Petrov, T. (2016). Efficient reduction of kappa
    models by static inspection of the rule-set (Vol. 9271, pp. 173–191). Presented
    at the HSB: Hybrid Systems Biology, Madrid, Spain: Springer. <a href="https://doi.org/10.1007/978-3-319-26916-0_10">https://doi.org/10.1007/978-3-319-26916-0_10</a>'
  chicago: Beica, Andreea, Calin C Guet, and Tatjana Petrov. “Efficient Reduction
    of Kappa Models by Static Inspection of the Rule-Set,” 9271:173–91. Springer,
    2016. <a href="https://doi.org/10.1007/978-3-319-26916-0_10">https://doi.org/10.1007/978-3-319-26916-0_10</a>.
  ieee: 'A. Beica, C. C. Guet, and T. Petrov, “Efficient reduction of kappa models
    by static inspection of the rule-set,” presented at the HSB: Hybrid Systems Biology,
    Madrid, Spain, 2016, vol. 9271, pp. 173–191.'
  ista: 'Beica A, Guet CC, Petrov T. 2016. Efficient reduction of kappa models by
    static inspection of the rule-set. HSB: Hybrid Systems Biology, LNCS, vol. 9271,
    173–191.'
  mla: Beica, Andreea, et al. <i>Efficient Reduction of Kappa Models by Static Inspection
    of the Rule-Set</i>. Vol. 9271, Springer, 2016, pp. 173–91, doi:<a href="https://doi.org/10.1007/978-3-319-26916-0_10">10.1007/978-3-319-26916-0_10</a>.
  short: A. Beica, C.C. Guet, T. Petrov, in:, Springer, 2016, pp. 173–191.
conference:
  end_date: 2015-09-05
  location: Madrid, Spain
  name: 'HSB: Hybrid Systems Biology'
  start_date: 2015-09-04
corr_author: '1'
date_created: 2018-12-11T11:52:31Z
date_published: 2016-01-10T00:00:00Z
date_updated: 2025-06-04T12:06:27Z
day: '10'
department:
- _id: CaGu
- _id: ToHe
doi: 10.1007/978-3-319-26916-0_10
ec_funded: 1
external_id:
  arxiv:
  - '1501.00440'
intvolume: '      9271'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1501.00440
month: '01'
oa: 1
oa_version: Preprint
page: 173 - 191
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication_status: published
publisher: Springer
publist_id: '5649'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Efficient reduction of kappa models by static inspection of the rule-set
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 9271
year: '2016'
...
---
_id: '15242'
abstract:
- lang: eng
  text: The recent discovery of gravitational radiation from merging black holes poses
    a challenge of how to organize the electromagnetic follow-up of gravitational-wave
    events as well as observed bursts of neutrinos. We propose a technique to select
    the galaxies that are most likely to host the event given some assumptions of
    whether the particular event is associated with recent star formation, low-metallicity
    stars or simply proportional to the total stellar mass in the galaxy. We combine
    data from the 2-MASS Photometric Redshift Galaxy Catalogue with results from galaxy
    formation simulations to develop observing strategies that potentially reduce
    the area of sky to search by up to a factor of 2 relative to an unweighted search
    of galaxies, and a factor of 20 to a search over the entire LIGO localization
    region.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Elisa
  full_name: Antolini, Elisa
  last_name: Antolini
- first_name: Ilaria
  full_name: Caiazzo, Ilaria
  id: 8ae5b6e7-2a03-11ee-914d-b58ed7a3b47d
  last_name: Caiazzo
  orcid: 0000-0002-4770-5388
- first_name: Romeel
  full_name: Davé, Romeel
  last_name: Davé
- first_name: Jeremy S.
  full_name: Heyl, Jeremy S.
  last_name: Heyl
citation:
  ama: Antolini E, Caiazzo I, Davé R, Heyl JS. Using galaxy formation simulations
    to optimize LIGO follow-up observations. <i>Monthly Notices of the Royal Astronomical
    Society</i>. 2016;466(2):2212-2216. doi:<a href="https://doi.org/10.1093/mnras/stw3292">10.1093/mnras/stw3292</a>
  apa: Antolini, E., Caiazzo, I., Davé, R., &#38; Heyl, J. S. (2016). Using galaxy
    formation simulations to optimize LIGO follow-up observations. <i>Monthly Notices
    of the Royal Astronomical Society</i>. Oxford University Press. <a href="https://doi.org/10.1093/mnras/stw3292">https://doi.org/10.1093/mnras/stw3292</a>
  chicago: Antolini, Elisa, Ilaria Caiazzo, Romeel Davé, and Jeremy S. Heyl. “Using
    Galaxy Formation Simulations to Optimize LIGO Follow-up Observations.” <i>Monthly
    Notices of the Royal Astronomical Society</i>. Oxford University Press, 2016.
    <a href="https://doi.org/10.1093/mnras/stw3292">https://doi.org/10.1093/mnras/stw3292</a>.
  ieee: E. Antolini, I. Caiazzo, R. Davé, and J. S. Heyl, “Using galaxy formation
    simulations to optimize LIGO follow-up observations,” <i>Monthly Notices of the
    Royal Astronomical Society</i>, vol. 466, no. 2. Oxford University Press, pp.
    2212–2216, 2016.
  ista: Antolini E, Caiazzo I, Davé R, Heyl JS. 2016. Using galaxy formation simulations
    to optimize LIGO follow-up observations. Monthly Notices of the Royal Astronomical
    Society. 466(2), 2212–2216.
  mla: Antolini, Elisa, et al. “Using Galaxy Formation Simulations to Optimize LIGO
    Follow-up Observations.” <i>Monthly Notices of the Royal Astronomical Society</i>,
    vol. 466, no. 2, Oxford University Press, 2016, pp. 2212–16, doi:<a href="https://doi.org/10.1093/mnras/stw3292">10.1093/mnras/stw3292</a>.
  short: E. Antolini, I. Caiazzo, R. Davé, J.S. Heyl, Monthly Notices of the Royal
    Astronomical Society 466 (2016) 2212–2216.
date_created: 2024-03-26T10:41:04Z
date_published: 2016-12-17T00:00:00Z
date_updated: 2024-04-08T07:05:23Z
day: '17'
doi: 10.1093/mnras/stw3292
extern: '1'
external_id:
  arxiv:
  - '1612.04412'
intvolume: '       466'
issue: '2'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.1612.04412
month: '12'
oa: 1
oa_version: Preprint
page: 2212-2216
publication: Monthly Notices of the Royal Astronomical Society
publication_identifier:
  eissn:
  - 1365-2966
  issn:
  - 0035-8711
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Using galaxy formation simulations to optimize LIGO follow-up observations
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 466
year: '2016'
...
---
_id: '15244'
abstract:
- lang: eng
  text: XIPE, the X-ray Imaging Polarimetry Explorer, is a mission dedicated to X-ray
    Astronomy. At the time of writing XIPE is in a competitive phase A as fourth medium
    size mission of ESA (M4). It promises to reopen the polarimetry window in high
    energy Astrophysics after more than 4 decades thanks to a detector that efficiently
    exploits the photoelectric effect and to X-ray optics with large effective area.
    XIPE uniqueness is time-spectrally-spatially- resolved X-ray polarimetry as a
    breakthrough in high energy astrophysics and fundamental physics. Indeed the payload
    consists of three Gas Pixel Detectors at the focus of three X-ray optics with
    a total effective area larger than one XMM mirror but with a low weight. The payload
    is compatible with the fairing of the Vega launcher. XIPE is designed as an observatory
    for X-ray astronomers with 75 % of the time dedicated to a Guest Observer competitive
    program and it is organized as a consortium across Europe with main contributions
    from Italy, Germany, Spain, United Kingdom, Poland, Sweden.
article_number: '990515'
article_processing_charge: No
arxiv: 1
author:
- first_name: Paolo
  full_name: Soffitta, Paolo
  last_name: Soffitta
- first_name: Ronaldo
  full_name: Bellazzini, Ronaldo
  last_name: Bellazzini
- first_name: Enrico
  full_name: Bozzo, Enrico
  last_name: Bozzo
- first_name: Vadim
  full_name: Burwitz, Vadim
  last_name: Burwitz
- first_name: Alberto
  full_name: Castro Tirado, Alberto
  last_name: Castro Tirado
- first_name: Enrico
  full_name: Costa, Enrico
  last_name: Costa
- first_name: Thierry
  full_name: Courvoisier, Thierry
  last_name: Courvoisier
- first_name: Hua
  full_name: Feng, Hua
  last_name: Feng
- first_name: Szymon
  full_name: Gburek, Szymon
  last_name: Gburek
- first_name: Rene'
  full_name: Goosmann, Rene'
  last_name: Goosmann
- first_name: Vladimir
  full_name: Karas, Vladimir
  last_name: Karas
- first_name: Giorgio
  full_name: Matt, Giorgio
  last_name: Matt
- first_name: Fabio
  full_name: Muleri, Fabio
  last_name: Muleri
- first_name: Kirpal
  full_name: Nandra, Kirpal
  last_name: Nandra
- first_name: Mark
  full_name: Pearce, Mark
  last_name: Pearce
- first_name: Juri
  full_name: Poutanen, Juri
  last_name: Poutanen
- first_name: Victor
  full_name: Reglero, Victor
  last_name: Reglero
- first_name: Maria Dolores
  full_name: Graziati, Maria Dolores
  last_name: Graziati
- first_name: Andrea
  full_name: Santangelo, Andrea
  last_name: Santangelo
- first_name: Gianpiero
  full_name: Tagliaferri, Gianpiero
  last_name: Tagliaferri
- first_name: Christopher
  full_name: Tenzer, Christopher
  last_name: Tenzer
- first_name: Jacco
  full_name: Vink, Jacco
  last_name: Vink
- first_name: Martin
  full_name: Weisskopf, Martin
  last_name: Weisskopf
- first_name: Silvia
  full_name: Zane, Silvia
  last_name: Zane
- first_name: I.
  full_name: Agudo, I.
  last_name: Agudo
- first_name: A.
  full_name: Antonelli, A.
  last_name: Antonelli
- first_name: P.
  full_name: Attina, P.
  last_name: Attina
- first_name: L.
  full_name: Baldini, L.
  last_name: Baldini
- first_name: A.
  full_name: Bykov, A.
  last_name: Bykov
- first_name: R.
  full_name: Carpentiero, R.
  last_name: Carpentiero
- first_name: E.
  full_name: Cavazzuti, E.
  last_name: Cavazzuti
- first_name: E.
  full_name: Churazov, E.
  last_name: Churazov
- first_name: E.
  full_name: Del Monte, E.
  last_name: Del Monte
- first_name: D.
  full_name: De Martino, D.
  last_name: De Martino
- first_name: I.
  full_name: Donnarumma, I.
  last_name: Donnarumma
- first_name: V.
  full_name: Doroshenko, V.
  last_name: Doroshenko
- first_name: Y.
  full_name: Evangelista, Y.
  last_name: Evangelista
- first_name: I.
  full_name: Ferreira, I.
  last_name: Ferreira
- first_name: E.
  full_name: Gallo, E.
  last_name: Gallo
- first_name: N.
  full_name: Grosso, N.
  last_name: Grosso
- first_name: P.
  full_name: Kaaret, P.
  last_name: Kaaret
- first_name: E.
  full_name: Kuulkers, E.
  last_name: Kuulkers
- first_name: J.
  full_name: Laranaga, J.
  last_name: Laranaga
- first_name: L.
  full_name: Latronico, L.
  last_name: Latronico
- first_name: D. H.
  full_name: Lumb, D. H.
  last_name: Lumb
- first_name: J.
  full_name: Macian, J.
  last_name: Macian
- first_name: J.
  full_name: Malzac, J.
  last_name: Malzac
- first_name: F.
  full_name: Marin, F.
  last_name: Marin
- first_name: E.
  full_name: Massaro, E.
  last_name: Massaro
- first_name: M.
  full_name: Minuti, M.
  last_name: Minuti
- first_name: C.
  full_name: Mundell, C.
  last_name: Mundell
- first_name: J. U.
  full_name: Ness, J. U.
  last_name: Ness
- first_name: T.
  full_name: Oosterbroek, T.
  last_name: Oosterbroek
- first_name: S.
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  last_name: Paltani
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- first_name: R.
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  last_name: Perna
- first_name: P.-O.
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  last_name: Petrucci
- first_name: H. B.
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- first_name: M.
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- first_name: J. P.
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- first_name: M.
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- first_name: A.
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- first_name: S.
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  last_name: Theodorou
- first_name: R.
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  last_name: Turolla
- first_name: E.
  full_name: Wilhelmi de Ona, E.
  last_name: Wilhelmi de Ona
- first_name: B.
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- first_name: A. M.
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  full_name: Allan, H.
  last_name: Allan
- first_name: R.
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  last_name: Aloisio
- first_name: D.
  full_name: Altamirano, D.
  last_name: Altamirano
- first_name: L.
  full_name: Amati, L.
  last_name: Amati
- first_name: E.
  full_name: Amato, E.
  last_name: Amato
- first_name: E.
  full_name: Angelakis, E.
  last_name: Angelakis
- first_name: J.
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  last_name: Arezu
- first_name: J.-L.
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  last_name: Atteia
- first_name: M.
  full_name: Axelsson, M.
  last_name: Axelsson
- first_name: M.
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- first_name: L.
  full_name: Ballo, L.
  last_name: Ballo
- first_name: S.
  full_name: Balman, S.
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conference:
  end_date: 2016-07-01
  location: Edinburgh, UK
  name: Astronomical Telescopes + Instrumentation
  start_date: 2016-06-26
date_created: 2024-03-26T10:41:49Z
date_published: 2016-10-11T00:00:00Z
date_updated: 2024-04-08T07:06:39Z
day: '11'
doi: 10.1117/12.2233046
extern: '1'
external_id:
  arxiv:
  - '1309.6995'
intvolume: '      9905'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.1309.6995
month: '10'
oa: 1
oa_version: Preprint
publication: 'Space Telescopes and Instrumentation 2016: Ultraviolet to Gamma Ray'
publication_identifier:
  issn:
  - 0168-9002
publication_status: published
publisher: SPIE
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'XIPE: The x-ray imaging polarimetry explorer'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 9905
year: '2016'
...
---
_id: '15245'
abstract:
- lang: eng
  text: 'eXTP is a science mission designed to study the state of matter under extreme
    conditions of density, gravity and magnetism. Primary goals are the determination
    of the equation of state of matter at supra-nuclear density, the measurement of
    QED effects in highly magnetized star, and the study of accretion in the strong-field
    regime of gravity. Primary targets include isolated and binary neutron stars,
    strong magnetic field systems like magnetars, and stellar-mass and supermassive
    black holes. The mission carries a unique and unprecedented suite of state-of-the-art
    scientific instruments enabling for the first time ever the simultaneous spectral-timing-polarimetry
    studies of cosmic sources in the energy range from 0.5-30 keV (and beyond). Key
    elements of the payload are: the Spectroscopic Focusing Array (SFA) - a set of
    11 X-ray optics for a total effective area of ∼0.9 m2 and 0.6 m2 at 2 keV and
    6 keV respectively, equipped with Silicon Drift Detectors offering <180 eV spectral
    resolution; the Large Area Detector (LAD) - a deployable set of 640 Silicon Drift
    Detectors, for a total effective area of ∼3.4 m2, between 6 and 10 keV, and spectral
    resolution better than 250 eV; the Polarimetry Focusing Array (PFA) - a set of
    2 X-ray telescope, for a total effective area of 250 cm2 at 2 keV, equipped with
    imaging gas pixel photoelectric polarimeters; the Wide Field Monitor (WFM) - a
    set of 3 coded mask wide field units, equipped with position-sensitive Silicon
    Drift Detectors, each covering a 90 degrees x 90 degrees field of view. The eXTP
    international consortium includes major institutions of the Chinese Academy of
    Sciences and Universities in China, as well as major institutions in several European
    countries and the United States. The predecessor of eXTP, the XTP mission concept,
    has been selected and funded as one of the so-called background missions in the
    Strategic Priority Space Science Program of the Chinese Academy of Sciences since
    2011. The strong European participation has significantly enhanced the scientific
    capabilities of eXTP. The planned launch date of the mission is earlier than 2025.'
article_number: '99051Q '
article_processing_charge: No
arxiv: 1
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citation:
  ama: 'Zhang SN, Feroci M, Santangelo A, et al. eXTP: Enhanced X-ray timing and polarization
    mission. In: <i>Proceedings of the SPIE</i>. Vol 9905. SPIE; 2016. doi:<a href="https://doi.org/10.1117/12.2232034">10.1117/12.2232034</a>'
  apa: 'Zhang, S. N., Feroci, M., Santangelo, A., Dong, Y. W., Feng, H., Lu, F. J.,
    … Zhou, X. L. (2016). eXTP: Enhanced X-ray timing and polarization mission. In
    <i>Proceedings of the SPIE</i> (Vol. 9905). SPIE. <a href="https://doi.org/10.1117/12.2232034">https://doi.org/10.1117/12.2232034</a>'
  chicago: 'Zhang, S. N., M. Feroci, A. Santangelo, Y. W. Dong, H. Feng, F. J. Lu,
    K. Nandra, et al. “EXTP: Enhanced X-Ray Timing and Polarization Mission.” In <i>Proceedings
    of the SPIE</i>, Vol. 9905. SPIE, 2016. <a href="https://doi.org/10.1117/12.2232034">https://doi.org/10.1117/12.2232034</a>.'
  ieee: 'S. N. Zhang <i>et al.</i>, “eXTP: Enhanced X-ray timing and polarization
    mission,” in <i>Proceedings of the SPIE</i>, 2016, vol. 9905.'
  ista: 'Zhang SN et al. 2016. eXTP: Enhanced X-ray timing and polarization mission.
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  mla: 'Zhang, S. N., et al. “EXTP: Enhanced X-Ray Timing and Polarization Mission.”
    <i>Proceedings of the SPIE</i>, vol. 9905, 99051Q, SPIE, 2016, doi:<a href="https://doi.org/10.1117/12.2232034">10.1117/12.2232034</a>.'
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    in ’t Zand, S. Zane, L. Alvarez, L. Amati, L. Baldini, C. Bambi, S. Basso, S.
    Bhattacharyya, R. Bellazzini, T. Belloni, P. Bellutti, S. Bianchi, A. Brez, M.
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date_created: 2024-03-26T10:42:21Z
date_published: 2016-07-01T00:00:00Z
date_updated: 2024-03-27T08:23:11Z
day: '01'
doi: 10.1117/12.2232034
extern: '1'
external_id:
  arxiv:
  - '1607.08823'
intvolume: '      9905'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.1607.08823
month: '07'
oa: 1
oa_version: Preprint
publication: Proceedings of the SPIE
publication_identifier:
  issn:
  - 0277-786X
publication_status: published
publisher: SPIE
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'eXTP: Enhanced X-ray timing and polarization mission'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 9905
year: '2016'
...
---
_id: '1526'
abstract:
- lang: eng
  text: 'We present the first study of robustness of systems that are both timed as
    well as reactive (I/O). We study the behavior of such timed I/O systems in the
    presence of uncertain inputs and formalize their robustness using the analytic
    notion of Lipschitz continuity: a timed I/O system is K-(Lipschitz) robust if
    the perturbation in its output is at most K times the perturbation in its input.
    We quantify input and output perturbation using similarity functions over timed
    words such as the timed version of the Manhattan distance and the Skorokhod distance.
    We consider two models of timed I/O systems — timed transducers and asynchronous
    sequential circuits. We show that K-robustness of timed transducers can be decided
    in polynomial space under certain conditions. For asynchronous sequential circuits,
    we reduce K-robustness w.r.t. timed Manhattan distances to K-robustness of discrete
    letter-to-letter transducers and show PSpace-completeness of the problem.'
acknowledgement: This research was supported in part by the European Research Council
  (ERC) under grant 267989 (QUAREM), by the Austrian Science Fund (FWF) under grants
  S11402-N23 (RiSE) and Z211-N23 (Wittgenstein Award), and by the National Science
  Centre (NCN), Poland under grant 2014/15/D/ST6/04543.
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Jan
  full_name: Otop, Jan
  id: 2FC5DA74-F248-11E8-B48F-1D18A9856A87
  last_name: Otop
- first_name: Roopsha
  full_name: Samanta, Roopsha
  id: 3D2AAC08-F248-11E8-B48F-1D18A9856A87
  last_name: Samanta
citation:
  ama: 'Henzinger TA, Otop J, Samanta R. Lipschitz robustness of timed I/O systems.
    In: Vol 9583. Springer; 2016:250-267. doi:<a href="https://doi.org/10.1007/978-3-662-49122-5_12">10.1007/978-3-662-49122-5_12</a>'
  apa: 'Henzinger, T. A., Otop, J., &#38; Samanta, R. (2016). Lipschitz robustness
    of timed I/O systems (Vol. 9583, pp. 250–267). Presented at the VMCAI: Verification,
    Model Checking and Abstract Interpretation, St. Petersburg, FL, USA: Springer.
    <a href="https://doi.org/10.1007/978-3-662-49122-5_12">https://doi.org/10.1007/978-3-662-49122-5_12</a>'
  chicago: Henzinger, Thomas A, Jan Otop, and Roopsha Samanta. “Lipschitz Robustness
    of Timed I/O Systems,” 9583:250–67. Springer, 2016. <a href="https://doi.org/10.1007/978-3-662-49122-5_12">https://doi.org/10.1007/978-3-662-49122-5_12</a>.
  ieee: 'T. A. Henzinger, J. Otop, and R. Samanta, “Lipschitz robustness of timed
    I/O systems,” presented at the VMCAI: Verification, Model Checking and Abstract
    Interpretation, St. Petersburg, FL, USA, 2016, vol. 9583, pp. 250–267.'
  ista: 'Henzinger TA, Otop J, Samanta R. 2016. Lipschitz robustness of timed I/O
    systems. VMCAI: Verification, Model Checking and Abstract Interpretation, LNCS,
    vol. 9583, 250–267.'
  mla: Henzinger, Thomas A., et al. <i>Lipschitz Robustness of Timed I/O Systems</i>.
    Vol. 9583, Springer, 2016, pp. 250–67, doi:<a href="https://doi.org/10.1007/978-3-662-49122-5_12">10.1007/978-3-662-49122-5_12</a>.
  short: T.A. Henzinger, J. Otop, R. Samanta, in:, Springer, 2016, pp. 250–267.
conference:
  end_date: 2016-01-19
  location: St. Petersburg, FL, USA
  name: 'VMCAI: Verification, Model Checking and Abstract Interpretation'
  start_date: 2016-01-17
corr_author: '1'
date_created: 2018-12-11T11:52:32Z
date_published: 2016-01-01T00:00:00Z
date_updated: 2025-09-18T11:06:25Z
day: '01'
department:
- _id: ToHe
doi: 10.1007/978-3-662-49122-5_12
ec_funded: 1
external_id:
  arxiv:
  - '1506.01233'
  isi:
  - '000375148800012'
intvolume: '      9583'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1506.01233
month: '01'
oa: 1
oa_version: Preprint
page: 250 - 267
project:
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z211
  name: Formal methods for the design and analysis of complex systems
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
publication_status: published
publisher: Springer
publist_id: '5647'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Lipschitz robustness of timed I/O systems
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 9583
year: '2016'
...