---
OA_place: repository
OA_type: green
_id: '20845'
abstract:
- lang: eng
  text: "We develop new attacks against the Evasive LWE family of assumptions, in
    both the public and private-coin regime. To the best of our knowledge, ours are
    the first attacks against Evasive LWE in the public-coin regime, for any instantiation
    from the family. Our attacks are summarized below.\r\n\r\nPublic-Coin Attacks.\r\n1.The
    recent work by Hseih, Lin and Luo [17] constructed the first Attribute Based Encryption
    (ABE) for unbounded depth circuits by relying on the “circular” evasive LWE assumption.
    This assumption has been popularly considered as a safe, public-coin instance
    of Evasive LWE in contrast to its “private-coin” cousins (for instance, see [10,
    11]).\r\nWe provide the first attack against this assumption, challenging the
    widely held belief that this is a public-coin assumption.\r\n2. We demonstrate
    a counter-example against vanilla public-coin evasive LWE by Wee [26] in an unnatural
    parameter regime. Our attack crucially relies on the error in the pre-condition
    being larger than the error in the post-condition, necessitating a refinement
    of the assumption.\r\n\r\nPrivate-Coin Attacks.\r\n1. The recent work by Agrawal,
    Kumari and Yamada [2] constructed the first functional encryption scheme for pseudorandom
    functionalities (PRFE) and extended this to obfuscation for pseudorandom functionalities
    (PRIO) [4] by relying on private-coin evasive LWE. We provide a new attack against
    the assumption stated in the first posting of their work (subsequently refined
    to avoid these attacks).\r\n2. The recent work by Branco et al. [8] (concurrently
    to [4]) provides a construction of obfuscation for pseudorandom functionalities
    by relying on private-coin evasive LWE. We provide a new attack against their
    stated assumption.\r\n3. Branco et al. [8] showed that there exist contrived,
    “self-referential” classes of pseudorandom functionalities for which pseudorandom
    obfuscation cannot exist. We extend their techniques to develop an analogous result
    for pseudorandom functional encryption.\r\n\r\nWhile Evasive LWE was developed
    to specifically avoid “zeroizing attacks”, our work shows that in certain settings,
    such attacks can still apply."
acknowledgement: "We thank Rachel Lin for expressing concern about the applicability
  of “HJL-style” attacks [15] on the construction in [2] during a talk by the first
  author about [2]. This was the starting point of the investigation that led us to
  develop the attack in [5, Sec 4.1]. The first author also thanks Hoeteck Wee for
  sharing his rationale for introducing evasive LWE.\r\nThe first author is supported
  by the CyStar center of excellence, the VHAR faculty chair, and the C3iHub fellowship.
  The third author thanks Cystar, IIT Madras, for supporting a visit to IIT Madras
  during which the collaboration was initiated. The 4th author is partly supported
  by JST CREST Grant Number JPMJCR22M1."
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Shweta
  full_name: Agrawal, Shweta
  last_name: Agrawal
- first_name: Anuja
  full_name: Modi, Anuja
  last_name: Modi
- first_name: Anshu
  full_name: Yadav, Anshu
  id: dc8f1524-403e-11ee-bf07-9649ad996e21
  last_name: Yadav
- first_name: Shota
  full_name: Yamada, Shota
  last_name: Yamada
citation:
  ama: 'Agrawal S, Modi A, Yadav A, Yamada S. Zeroizing attacks against evasive and circular
    evasive LWE. In: <i>23rd International Conference on Theory of Cryptography</i>.
    Vol 16269. Springer Nature; 2025:259-290. doi:<a href="https://doi.org/10.1007/978-3-032-12293-3_9">10.1007/978-3-032-12293-3_9</a>'
  apa: 'Agrawal, S., Modi, A., Yadav, A., &#38; Yamada, S. (2025). Zeroizing attacks
    against evasive and circular evasive LWE. In <i>23rd International Conference
    on Theory of Cryptography</i> (Vol. 16269, pp. 259–290). Aarhus, Denmark: Springer
    Nature. <a href="https://doi.org/10.1007/978-3-032-12293-3_9">https://doi.org/10.1007/978-3-032-12293-3_9</a>'
  chicago: Agrawal, Shweta, Anuja Modi, Anshu Yadav, and Shota Yamada. “Zeroizing
    Attacks against Evasive and Circular Evasive LWE.” In <i>23rd International Conference
    on Theory of Cryptography</i>, 16269:259–90. Springer Nature, 2025. <a href="https://doi.org/10.1007/978-3-032-12293-3_9">https://doi.org/10.1007/978-3-032-12293-3_9</a>.
  ieee: S. Agrawal, A. Modi, A. Yadav, and S. Yamada, “Zeroizing attacks against evasive
    and circular evasive LWE,” in <i>23rd International Conference on Theory of Cryptography</i>,
    Aarhus, Denmark, 2025, vol. 16269, pp. 259–290.
  ista: 'Agrawal S, Modi A, Yadav A, Yamada S. 2025. Zeroizing attacks against evasive
    and circular evasive LWE. 23rd International Conference on Theory of Cryptography.
    TCC: Theory of Cryptography, LNCS, vol. 16269, 259–290.'
  mla: Agrawal, Shweta, et al. “Zeroizing Attacks against Evasive and Circular Evasive
    LWE.” <i>23rd International Conference on Theory of Cryptography</i>, vol. 16269,
    Springer Nature, 2025, pp. 259–90, doi:<a href="https://doi.org/10.1007/978-3-032-12293-3_9">10.1007/978-3-032-12293-3_9</a>.
  short: S. Agrawal, A. Modi, A. Yadav, S. Yamada, in:, 23rd International Conference
    on Theory of Cryptography, Springer Nature, 2025, pp. 259–290.
conference:
  end_date: 2025-12-05
  location: Aarhus, Denmark
  name: 'TCC: Theory of Cryptography'
  start_date: 2025-12-01
date_created: 2025-12-21T23:01:33Z
date_published: 2025-12-05T00:00:00Z
date_updated: 2025-12-29T11:51:13Z
day: '05'
department:
- _id: KrPi
doi: 10.1007/978-3-032-12293-3_9
intvolume: '     16269'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://eprint.iacr.org/2025/375
month: '12'
oa: 1
oa_version: Preprint
page: 259-290
publication: 23rd International Conference on Theory of Cryptography
publication_identifier:
  eissn:
  - 1611-3349
  isbn:
  - '9783032122926'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Zeroizing attacks against evasive and circular evasive LWE
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16269
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '20846'
abstract:
- lang: eng
  text: "CVRFs are PRFs that unify the properties of verifiable and constrained PRFs.
    Since they were introduced concurrently by Fuchsbauer and Chandran-Raghuraman-Vinayagamurthy
    in 2014, it has been an open problem to construct CVRFs without using heavy machinery
    such as multilinear maps, obfuscation or functional encryption.\r\nWe solve this
    problem by constructing a prefix-constrained verifiable PRF that does not rely
    on the aforementioned assumptions. Essentially, our construction is a verifiable
    version of the Goldreich-Goldwasser-Micali PRF. To achieve verifiability we leverage
    degree-2 algebraic PRGs and bilinear groups. In short, proofs consist of intermediate
    values of the Goldreich-Goldwasser-Micali PRF raised to the exponents of group
    elements. These outputs can be verified using pairings since the underlying PRG
    is of degree 2.\r\nWe prove the selective security of our construction under the
    Decisional Square Diffie-Hellman (DSDH) assumption and a new assumption, which
    we dub recursive Decisional Diffie-Hellman (recursive DDH).\r\nWe prove the soundness
    of recursive DDH in the generic group model assuming the hardness of the Multivariate
    Quadratic (MQ) problem and a new variant thereof, which we call MQ+.\r\nLast,
    in terms of applications, we observe that our CVRF is also an exponent (C)VRF
    in the plain model. Exponent VRFs were recently introduced by Boneh et al. (Eurocrypt’25)
    with various applications to threshold cryptography in mind. In addition to that,
    we give further applications for prefix-CVRFs in the blockchain setting, namely,
    stake-pooling and compressible randomness beacons."
acknowledgement: "We thank Jonas Steinbach and Gertjan De Mulder for helpful discussions
  on BIP 32, Dennis Hofheinz and Julia Kastner for helpful discussions on early prototypes
  of our CVRF, and Klaus Kraßnitzer for running pairing benchmarks on his MacBook
  Pro.\r\nChristoph U. Günther: This research was funded in whole or in part by the
  Austrian Science Fund (FWF) 10.55776/F85. For open access purposes, the author has
  applied a CC BY public copyright license to any author-accepted manuscript version
  arising from this submission."
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Nicholas
  full_name: Brandt, Nicholas
  last_name: Brandt
- first_name: Miguel
  full_name: Cueto Noval, Miguel
  id: ffc563a3-f6e0-11ea-865d-e3cce03d17cc
  last_name: Cueto Noval
  orcid: 0000-0002-2505-4246
- first_name: Christoph Ullrich
  full_name: Günther, Christoph Ullrich
  id: ec98511c-eb8e-11eb-b029-edd25d7271a1
  last_name: Günther
- first_name: Akin
  full_name: Ünal, Akin
  id: f6b56fb6-dc63-11ee-9dbf-f6780863a85a
  last_name: Ünal
  orcid: 0000-0002-8929-0221
- first_name: Stella
  full_name: Wohnig, Stella
  last_name: Wohnig
citation:
  ama: 'Brandt N, Cueto Noval M, Günther CU, Ünal A, Wohnig S. Constrained verifiable
    random functions without obfuscation and friends. In: <i>23rd International Conference
    on Theory of Cryptography</i>. Vol 16271. Springer Nature; 2025:478-511. doi:<a
    href="https://doi.org/10.1007/978-3-032-12290-2_16">10.1007/978-3-032-12290-2_16</a>'
  apa: 'Brandt, N., Cueto Noval, M., Günther, C. U., Ünal, A., &#38; Wohnig, S. (2025).
    Constrained verifiable random functions without obfuscation and friends. In <i>23rd
    International Conference on Theory of Cryptography</i> (Vol. 16271, pp. 478–511).
    Aarhus, Denmark: Springer Nature. <a href="https://doi.org/10.1007/978-3-032-12290-2_16">https://doi.org/10.1007/978-3-032-12290-2_16</a>'
  chicago: Brandt, Nicholas, Miguel Cueto Noval, Christoph Ullrich Günther, Akin Ünal,
    and Stella Wohnig. “Constrained Verifiable Random Functions without Obfuscation
    and Friends.” In <i>23rd International Conference on Theory of Cryptography</i>,
    16271:478–511. Springer Nature, 2025. <a href="https://doi.org/10.1007/978-3-032-12290-2_16">https://doi.org/10.1007/978-3-032-12290-2_16</a>.
  ieee: N. Brandt, M. Cueto Noval, C. U. Günther, A. Ünal, and S. Wohnig, “Constrained
    verifiable random functions without obfuscation and friends,” in <i>23rd International
    Conference on Theory of Cryptography</i>, Aarhus, Denmark, 2025, vol. 16271, pp.
    478–511.
  ista: 'Brandt N, Cueto Noval M, Günther CU, Ünal A, Wohnig S. 2025. Constrained
    verifiable random functions without obfuscation and friends. 23rd International
    Conference on Theory of Cryptography. TCC: Theory of Cryptography, LNCS, vol.
    16271, 478–511.'
  mla: Brandt, Nicholas, et al. “Constrained Verifiable Random Functions without Obfuscation
    and Friends.” <i>23rd International Conference on Theory of Cryptography</i>,
    vol. 16271, Springer Nature, 2025, pp. 478–511, doi:<a href="https://doi.org/10.1007/978-3-032-12290-2_16">10.1007/978-3-032-12290-2_16</a>.
  short: N. Brandt, M. Cueto Noval, C.U. Günther, A. Ünal, S. Wohnig, in:, 23rd International
    Conference on Theory of Cryptography, Springer Nature, 2025, pp. 478–511.
conference:
  end_date: 2025-12-05
  location: Aarhus, Denmark
  name: 'TCC: Theory of Cryptography'
  start_date: 2025-12-01
corr_author: '1'
date_created: 2025-12-21T23:01:34Z
date_published: 2025-12-05T00:00:00Z
date_updated: 2025-12-29T11:11:29Z
day: '05'
department:
- _id: KrPi
doi: 10.1007/978-3-032-12290-2_16
intvolume: '     16271'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://eprint.iacr.org/2025/1045
month: '12'
oa: 1
oa_version: Preprint
page: 478-511
project:
- _id: 34a34d57-11ca-11ed-8bc3-a2688a8724e1
  grant_number: F8509
  name: Security and Privacy by Design for Complex Systems
publication: 23rd International Conference on Theory of Cryptography
publication_identifier:
  eissn:
  - 1611-3349
  isbn:
  - '9783032122896'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Constrained verifiable random functions without obfuscation and friends
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16271
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '20847'
abstract:
- lang: eng
  text: "We report on an experimental active matter system with motion restricted
    to four cardinal directions. Our particles are magnetite-doped colloidal spheres
    driven by the Quincke electrorotational instability. The absence of a magnetic
    field (|\U0001D469|=0) leads to circular trajectories interspersed with short
    spontaneous runs. Intermediate fields (|\U0001D469|≲20mT) linearize the motion
    along the axis perpendicular to \U0001D469. At high magnetic fields, we observe
    the surprising emergence of a second, distinct linearization along the axis parallel
    to \U0001D469. With numerical simulations, we show that this behavior can be explained
    by anisotropic magnetic susceptibility."
acknowledged_ssus:
- _id: M-Shop
- _id: NanoFab
- _id: ScienComp
- _id: LifeSc
acknowledgement: "This research was funded in whole or in part by the Austrian Science
  Fund (FWF) [Grant DOI: 10.55776/ESP298]. This project has received funding from
  the European Research Council (ERC) under the European Union’s Horizon 2020 research
  and innovation programme (Grant\r\nAgreement No. 949120). This research was supported
  by the Scientific Service Units of The Institute of Science and Technology Austria
  (ISTA) through resources provided by the Miba Machine Shop, Nanofabrication Facility,
  Scientific Computing Facility, and Lab Support Facility. We wish to acknowledge
  the crucial contributions of Alexandre Morin in getting the project off the ground,
  and Jack Merrin for creating the SU-8 deposition protocol used in the construction
  of our\r\ncells. We also wish to thank Kimberley Modic and Hamza Nasir for their
  work on single-particle characterization. "
article_number: '065418'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Eavan
  full_name: Fitzgerald, Eavan
  id: 2df8ab8f-080d-11ed-979a-bfe651ca3afa
  last_name: Fitzgerald
- first_name: Cécile
  full_name: Clavaud, Cécile
  id: 5f654c5d-04a1-11eb-ab36-ba9ffec58bd8
  last_name: Clavaud
  orcid: 0000-0002-1843-3803
- first_name: Debasish
  full_name: Das, Debasish
  last_name: Das
- first_name: Isaac C
  full_name: Lenton, Isaac C
  id: a550210f-223c-11ec-8182-e2d45e817efb
  last_name: Lenton
  orcid: 0000-0002-5010-6984
- first_name: Scott R
  full_name: Waitukaitis, Scott R
  id: 3A1FFC16-F248-11E8-B48F-1D18A9856A87
  last_name: Waitukaitis
  orcid: 0000-0002-2299-3176
citation:
  ama: 'Fitzgerald E, Clavaud C, Das D, Lenton IC, Waitukaitis SR. Rolling at right
    angles: Magnetic anisotropy enables dual-anisotropic active matter. <i>Physical
    Review E</i>. 2025;112(6). doi:<a href="https://doi.org/10.1103/1ss8-31rb">10.1103/1ss8-31rb</a>'
  apa: 'Fitzgerald, E., Clavaud, C., Das, D., Lenton, I. C., &#38; Waitukaitis, S.
    R. (2025). Rolling at right angles: Magnetic anisotropy enables dual-anisotropic
    active matter. <i>Physical Review E</i>. American Physical Society. <a href="https://doi.org/10.1103/1ss8-31rb">https://doi.org/10.1103/1ss8-31rb</a>'
  chicago: 'Fitzgerald, Eavan, Cécile Clavaud, Debasish Das, Isaac C Lenton, and Scott
    R Waitukaitis. “Rolling at Right Angles: Magnetic Anisotropy Enables Dual-Anisotropic
    Active Matter.” <i>Physical Review E</i>. American Physical Society, 2025. <a
    href="https://doi.org/10.1103/1ss8-31rb">https://doi.org/10.1103/1ss8-31rb</a>.'
  ieee: 'E. Fitzgerald, C. Clavaud, D. Das, I. C. Lenton, and S. R. Waitukaitis, “Rolling
    at right angles: Magnetic anisotropy enables dual-anisotropic active matter,”
    <i>Physical Review E</i>, vol. 112, no. 6. American Physical Society, 2025.'
  ista: 'Fitzgerald E, Clavaud C, Das D, Lenton IC, Waitukaitis SR. 2025. Rolling
    at right angles: Magnetic anisotropy enables dual-anisotropic active matter. Physical
    Review E. 112(6), 065418.'
  mla: 'Fitzgerald, Eavan, et al. “Rolling at Right Angles: Magnetic Anisotropy Enables
    Dual-Anisotropic Active Matter.” <i>Physical Review E</i>, vol. 112, no. 6, 065418,
    American Physical Society, 2025, doi:<a href="https://doi.org/10.1103/1ss8-31rb">10.1103/1ss8-31rb</a>.'
  short: E. Fitzgerald, C. Clavaud, D. Das, I.C. Lenton, S.R. Waitukaitis, Physical
    Review E 112 (2025).
corr_author: '1'
date_created: 2025-12-21T23:01:34Z
date_published: 2025-12-01T00:00:00Z
date_updated: 2025-12-29T11:19:34Z
day: '01'
ddc:
- '530'
department:
- _id: ScWa
doi: 10.1103/1ss8-31rb
ec_funded: 1
external_id:
  arxiv:
  - '2508.05643'
file:
- access_level: open_access
  checksum: d593e933f976c3f3cde37ad66539d57d
  content_type: application/pdf
  creator: dernst
  date_created: 2025-12-29T11:15:42Z
  date_updated: 2025-12-29T11:15:42Z
  file_id: '20862'
  file_name: 2025_PhysReviewE_Fitzgerald.pdf
  file_size: 2131491
  relation: main_file
  success: 1
file_date_updated: 2025-12-29T11:15:42Z
has_accepted_license: '1'
intvolume: '       112'
issue: '6'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
project:
- _id: bd8eede5-d553-11ed-ba76-eaded0d13485
  grant_number: E 298
  name: 'MixQUIckR: Mixing with QUIncke Rollers'
- _id: 0aa60e99-070f-11eb-9043-a6de6bdc3afa
  call_identifier: H2020
  grant_number: '949120'
  name: 'Tribocharge: a multi-scale approach to an enduring problem in physics'
publication: Physical Review E
publication_identifier:
  eissn:
  - 2470-0053
  issn:
  - 2470-0045
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Rolling at right angles: Magnetic anisotropy enables dual-anisotropic active
  matter'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 112
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '20848'
abstract:
- lang: eng
  text: 'Genetic variation that influences complex disease susceptibility is introduced
    into the population by mutation and removed by natural selection and genetic drift.
    This mutation–selection–drift balance (MSDB) shapes the prevalence of a disease
    and its genetic architecture. To date, however, MSDB has been modeled only for
    monogenic (Mendelian) diseases. Here, we develop an MSDB model for complex disease
    susceptibility: we assume that genotype relates to disease risk according to the
    canonical liability threshold model and that the selection on variants affecting
    risk stems from the fitness cost of the disease. We focus on diseases that are
    highly polygenic, entail a substantial fitness cost, and are neither extremely
    common in the population nor exceedingly rare. The comparison of model predictions
    with genome-wide association studies and other observations in humans indicates
    that common genetic variation affecting complex disease susceptibility is little
    affected by directional selection and instead shaped by pleiotropic stabilizing
    selection on other traits. In turn, directional selection may exert a more substantial
    effect on rare, large-effect variants. Our results also suggest that current estimates
    of disease heritability are likely biased. The model thus provides a better understanding
    of the evolutionary processes that shape the architecture and prevalence of complex
    diseases.'
acknowledgement: We thank Nick Barton, Magnus Nordborg, John Novembre, Molly Przeworski,
  and Himani Sachdeva for many helpful discussions and for comments on the manuscript,
  and we thank Joshua Schraiber and 2 anonymous reviewers for comments on the manuscript.
  We also thank members of the Sella, Przeworski and Andolfatto labs at Columbia University,
  and the Berg, Novembre and Steinrücken labs at the University of Chicago, for feedback
  on the work at various stages. This work was completed in part with resources provided
  by the University of Chicago's Research Computing Center. This work was supported
  by National Institutes of Health F32 grant GM126787 and R35 grant GM151257 to J.J.B.
  and National Institutes of Health R01 grant GM115889 to G.S.
article_number: iyaf220
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Jeremy J.
  full_name: Berg, Jeremy J.
  last_name: Berg
- first_name: Xinyi
  full_name: Li, Xinyi
  last_name: Li
- first_name: Kellen
  full_name: Riall, Kellen
  last_name: Riall
- first_name: Laura
  full_name: Hayward, Laura
  id: fc885ee5-24bf-11eb-ad7b-bcc5104c0c1b
  last_name: Hayward
- first_name: Guy
  full_name: Sella, Guy
  last_name: Sella
citation:
  ama: Berg JJ, Li X, Riall K, Hayward L, Sella G. Mutation–selection–drift balance
    models of complex diseases. <i>Genetics</i>. 2025;231(4). doi:<a href="https://doi.org/10.1093/genetics/iyaf220">10.1093/genetics/iyaf220</a>
  apa: Berg, J. J., Li, X., Riall, K., Hayward, L., &#38; Sella, G. (2025). Mutation–selection–drift
    balance models of complex diseases. <i>Genetics</i>. Oxford University Press.
    <a href="https://doi.org/10.1093/genetics/iyaf220">https://doi.org/10.1093/genetics/iyaf220</a>
  chicago: Berg, Jeremy J., Xinyi Li, Kellen Riall, Laura Hayward, and Guy Sella.
    “Mutation–Selection–Drift Balance Models of Complex Diseases.” <i>Genetics</i>.
    Oxford University Press, 2025. <a href="https://doi.org/10.1093/genetics/iyaf220">https://doi.org/10.1093/genetics/iyaf220</a>.
  ieee: J. J. Berg, X. Li, K. Riall, L. Hayward, and G. Sella, “Mutation–selection–drift
    balance models of complex diseases,” <i>Genetics</i>, vol. 231, no. 4. Oxford
    University Press, 2025.
  ista: Berg JJ, Li X, Riall K, Hayward L, Sella G. 2025. Mutation–selection–drift
    balance models of complex diseases. Genetics. 231(4), iyaf220.
  mla: Berg, Jeremy J., et al. “Mutation–Selection–Drift Balance Models of Complex
    Diseases.” <i>Genetics</i>, vol. 231, no. 4, iyaf220, Oxford University Press,
    2025, doi:<a href="https://doi.org/10.1093/genetics/iyaf220">10.1093/genetics/iyaf220</a>.
  short: J.J. Berg, X. Li, K. Riall, L. Hayward, G. Sella, Genetics 231 (2025).
date_created: 2025-12-21T23:01:34Z
date_published: 2025-12-01T00:00:00Z
date_updated: 2025-12-29T11:29:16Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1093/genetics/iyaf220
external_id:
  pmid:
  - '41073879'
file:
- access_level: open_access
  checksum: b02eb6b78028b8bef435edc8435a8468
  content_type: application/pdf
  creator: dernst
  date_created: 2025-12-29T11:27:51Z
  date_updated: 2025-12-29T11:27:51Z
  file_id: '20863'
  file_name: 2025_Genetics_Berg.pdf
  file_size: 1182339
  relation: main_file
  success: 1
file_date_updated: 2025-12-29T11:27:51Z
has_accepted_license: '1'
intvolume: '       231'
issue: '4'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '12'
oa: 1
oa_version: Published Version
pmid: 1
publication: Genetics
publication_identifier:
  eissn:
  - 1943-2631
  issn:
  - 0016-6731
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mutation–selection–drift balance models of complex diseases
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 231
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '20850'
abstract:
- lang: eng
  text: We provide an estimate for the number of nontrivial integer points on the
    Pellian surface t^2 - du^2 = 1 in a bounded region. We give a lower bound on the
    size of fundamental solutions for almost all d in a certain class, based on a
    recent conjecture of Browning and Wilsch about integer points on log K3 surfaces.
    We also obtain an upper bound on the average of class number in this class, assuming
    the same conjecture.
- lang: fre
  text: "Nous donnons une estimation du nombre de points entiers non triviaux sur
    la surface pellienne \r\nt^2 - du^2 = 1 dans une région bornée. Nous établissons
    une borne inférieure pour la taille des solutions fondamentales pour presque tout
    d appartenant à une certaine classe, en nous fondant sur une conjecture récente
    de Browning et Wilsch concernant les points entiers sur les surfaces log K3. Nous
    obtenons également une borne supérieure pour la moyenne du nombre de classes dans
    cette classe, sous la même hypothèse conjecturale."
acknowledgement: The author would like to thank his supervisor Tim Browning for suggesting
  this project and many helpful conversations and useful comments. Moreover, he is
  grateful to Jakob Glas, Damaris Schindler, Igor Shparlinski, Matteo Verzobio, Victor
  Wang, Florian Wilsch and Shuntaro Yamagishi for taking their time to answer his
  questions and their valuable suggestions.
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Yijie
  full_name: Diao, Yijie
  id: 7b7eb4ca-eb2c-11ec-b98b-accec0b20c3b
  last_name: Diao
  orcid: 0000-0002-4989-5330
citation:
  ama: Diao Y. Class numbers and integer points on some Pellian surfaces. <i>Journal
    de theorie des nombres de Bordeaux</i>. 2025;37(3):973-988. doi:<a href="https://doi.org/10.5802/jtnb.1348">10.5802/jtnb.1348</a>
  apa: Diao, Y. (2025). Class numbers and integer points on some Pellian surfaces.
    <i>Journal de Theorie Des Nombres de Bordeaux</i>. Université de Bordeaux. <a
    href="https://doi.org/10.5802/jtnb.1348">https://doi.org/10.5802/jtnb.1348</a>
  chicago: Diao, Yijie. “Class Numbers and Integer Points on Some Pellian Surfaces.”
    <i>Journal de Theorie Des Nombres de Bordeaux</i>. Université de Bordeaux, 2025.
    <a href="https://doi.org/10.5802/jtnb.1348">https://doi.org/10.5802/jtnb.1348</a>.
  ieee: Y. Diao, “Class numbers and integer points on some Pellian surfaces,” <i>Journal
    de theorie des nombres de Bordeaux</i>, vol. 37, no. 3. Université de Bordeaux,
    pp. 973–988, 2025.
  ista: Diao Y. 2025. Class numbers and integer points on some Pellian surfaces. Journal
    de theorie des nombres de Bordeaux. 37(3), 973–988.
  mla: Diao, Yijie. “Class Numbers and Integer Points on Some Pellian Surfaces.” <i>Journal
    de Theorie Des Nombres de Bordeaux</i>, vol. 37, no. 3, Université de Bordeaux,
    2025, pp. 973–88, doi:<a href="https://doi.org/10.5802/jtnb.1348">10.5802/jtnb.1348</a>.
  short: Y. Diao, Journal de Theorie Des Nombres de Bordeaux 37 (2025) 973–988.
corr_author: '1'
date_created: 2025-12-21T23:01:35Z
date_published: 2025-11-27T00:00:00Z
date_updated: 2025-12-29T10:08:46Z
day: '27'
ddc:
- '510'
department:
- _id: TiBr
doi: 10.5802/jtnb.1348
external_id:
  arxiv:
  - '2408.03774'
file:
- access_level: open_access
  checksum: 67aa0afbc0b5bcbff5341f4d25e6ba20
  content_type: application/pdf
  creator: dernst
  date_created: 2025-12-29T10:05:22Z
  date_updated: 2025-12-29T10:05:22Z
  file_id: '20861'
  file_name: 2025_JTNB_Diao.pdf
  file_size: 766196
  relation: main_file
  success: 1
file_date_updated: 2025-12-29T10:05:22Z
has_accepted_license: '1'
intvolume: '        37'
issue: '3'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nd/4.0/
month: '11'
oa: 1
oa_version: Published Version
page: 973-988
publication: Journal de theorie des nombres de Bordeaux
publication_identifier:
  eissn:
  - 2118-8572
  issn:
  - 1246-7405
publication_status: published
publisher: Université de Bordeaux
quality_controlled: '1'
scopus_import: '1'
status: public
title: Class numbers and integer points on some Pellian surfaces
tmp:
  image: /image/cc_by_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nd/4.0/legalcode
  name: Creative Commons Attribution-NoDerivatives 4.0 International (CC BY-ND 4.0)
  short: CC BY-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 37
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '20851'
abstract:
- lang: eng
  text: High-voltage disordered spinel LiNi0.5Mn1.5O4 is a promising cathode material
    for high power density in lithium-ion batteries. However, it suffers from poor
    cycle life associated with the rock-salt phase transformation. This study presents
    a straightforward synthesis approach to enhance the electrochemical performance
    of LiNi0.5Mn1.5O4 through a synergistic solid-state modification with LiF and
    AlF3. This dual modification promotes rapid Li⁺ diffusion, enables near-complete
    delithiation/lithiation, approaching the theoretical capacity of disordered LiNi0.5Mn1.5O4,
    and, more importantly, effectively mitigates the formation of the rock-salt phase,
    thereby enhancing structural stability, as confirmed by operando X-ray absorption
    spectroscopy (XAS) and synchrotron X-ray diffraction (SXRD). As a result, the
    optimized LiNi0.5Mn1.5O4 (10 mg AlF3 + 30 mg LiF) delivers high reversible capacities
    of 142.1, 139.1, 129.2, 121.6, 110.3, 93.5, and 76.1 mAh∙g−1 at 0.2C, 0.5C, 1.0C,
    2.0C, 3.0C, 4.0C, and 5.0C, respectively. Full cells using graphite as the anode
    and a high-loading cathode exhibit excellent cycling performance. They retain
    80% of their capacity after 200 cycles at 0.5C within a voltage window of 3.5–4.9
    V with cathode loading of 11 mg∙cm−2. The findings of this study will significantly
    advance high-power LiNi0.5Mn1.5O4 materials, offering improved battery life and
    thereby enhancing their potential for practical applications.
acknowledged_ssus:
- _id: EM-Fac
- _id: NanoFab
acknowledgement: 'This work was supported by the European Commission-financed project
  IntelLigent (HORIZON-CL5-2021-D2-01-02) with project ID number 101069765. In collaboration
  with ALBA staff, the operando SXRD and XAS experiments were performed at BL-16-NOTOS
  beamline at ALBA Synchrotron Light Source (experiment number: 2023097765). This
  research was supported by the Scientific Service Units (SSU) of the Institute of
  Science and Technology Austria (ISTA) through resources provided by the Electron
  Microscopy Facility (EMF) and the Nanofabrication Facility (NFF), and M.I. and S.H.
  acknowledge financial support from ISTA and the Werner Siemens Foundation. Jordi
  Jacas Biendicho acknowledges the fellowship RYC2021-034994-I, funded by MICIU/AEI/10.13039/501100011033
  and the European Union «NextGenerationEU»/PRTR». Jordi Llorca is a Serra Húnter
  Fellow and is grateful to projects MICIN/AEI/FEDER PID2021-124572OB-C31 and Maria
  de Maeztu Units of Excellence Programme CEX2023-001300-M, and GC 2021 SGR 01061.'
article_number: e15962
article_processing_charge: Yes
article_type: original
author:
- first_name: Xingqi
  full_name: Chang, Xingqi
  last_name: Chang
- first_name: Carlos
  full_name: Escudero, Carlos
  last_name: Escudero
- first_name: Ashley P.
  full_name: Black, Ashley P.
  last_name: Black
- first_name: Sharona
  full_name: Horta, Sharona
  id: 03a7e858-01b1-11ec-8b71-99ae6c4a05bc
  last_name: Horta
- first_name: Elías
  full_name: Martínez, Elías
  last_name: Martínez
- first_name: Xuan
  full_name: Lu, Xuan
  last_name: Lu
- first_name: Jordi
  full_name: Llorca, Jordi
  last_name: Llorca
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Jordi Jacas
  full_name: Biendicho, Jordi Jacas
  last_name: Biendicho
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
citation:
  ama: Chang X, Escudero C, Black AP, et al. Mitigating the rock-salt phase transformation
    in disordered LNMO through synergetic solid-state AlF3/LiF modifications. <i>Advanced
    Science</i>. 2025. doi:<a href="https://doi.org/10.1002/advs.202515962">10.1002/advs.202515962</a>
  apa: Chang, X., Escudero, C., Black, A. P., Horta, S., Martínez, E., Lu, X., … Cabot,
    A. (2025). Mitigating the rock-salt phase transformation in disordered LNMO through
    synergetic solid-state AlF3/LiF modifications. <i>Advanced Science</i>. Wiley.
    <a href="https://doi.org/10.1002/advs.202515962">https://doi.org/10.1002/advs.202515962</a>
  chicago: Chang, Xingqi, Carlos Escudero, Ashley P. Black, Sharona Horta, Elías Martínez,
    Xuan Lu, Jordi Llorca, Maria Ibáñez, Jordi Jacas Biendicho, and Andreu Cabot.
    “Mitigating the Rock-Salt Phase Transformation in Disordered LNMO through Synergetic
    Solid-State AlF3/LiF Modifications.” <i>Advanced Science</i>. Wiley, 2025. <a
    href="https://doi.org/10.1002/advs.202515962">https://doi.org/10.1002/advs.202515962</a>.
  ieee: X. Chang <i>et al.</i>, “Mitigating the rock-salt phase transformation in
    disordered LNMO through synergetic solid-state AlF3/LiF modifications,” <i>Advanced
    Science</i>. Wiley, 2025.
  ista: Chang X, Escudero C, Black AP, Horta S, Martínez E, Lu X, Llorca J, Ibáñez
    M, Biendicho JJ, Cabot A. 2025. Mitigating the rock-salt phase transformation
    in disordered LNMO through synergetic solid-state AlF3/LiF modifications. Advanced
    Science., e15962.
  mla: Chang, Xingqi, et al. “Mitigating the Rock-Salt Phase Transformation in Disordered
    LNMO through Synergetic Solid-State AlF3/LiF Modifications.” <i>Advanced Science</i>,
    e15962, Wiley, 2025, doi:<a href="https://doi.org/10.1002/advs.202515962">10.1002/advs.202515962</a>.
  short: X. Chang, C. Escudero, A.P. Black, S. Horta, E. Martínez, X. Lu, J. Llorca,
    M. Ibáñez, J.J. Biendicho, A. Cabot, Advanced Science (2025).
date_created: 2025-12-21T23:01:35Z
date_published: 2025-12-12T00:00:00Z
date_updated: 2025-12-29T10:15:43Z
day: '12'
ddc:
- '540'
department:
- _id: MaIb
doi: 10.1002/advs.202515962
has_accepted_license: '1'
language:
- iso: eng
month: '12'
oa_version: Published Version
project:
- _id: 9B8F7476-BA93-11EA-9121-9846C619BF3A
  name: 'HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of
    Semiconductors for Waste Heat Recovery'
publication: Advanced Science
publication_identifier:
  eissn:
  - 2198-3844
publication_status: epub_ahead
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mitigating the rock-salt phase transformation in disordered LNMO through synergetic
  solid-state AlF3/LiF modifications
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '20857'
abstract:
- lang: eng
  text: 'Evolutionary games provide a flexible mathematical framework for many problems
    in biology and social evolution. Prisoners’ dilemma, and in particular, the important
    special case of donation games, represents social dilemmas where cooperation is
    mutually beneficial, yet defection is preferred by selfish agents. In evolutionary
    games on networks, the agents interact over a population structure. The existence
    of population structures that promote cooperative behavior is a fascinating and
    active research topic. Previous research establishes structures promoting cooperation
    in the limit of weak selection where the benefit-to-cost ratio β exceeds 1.5.
    The existence of such structures for medium and strong selection for 1 < ß < 2
    and for weak selection for 1 < ß < 1.5 has been a long-standing open question.
    First, we answer the open questions in the affirmative: For every selection strength
    and every ß > 1, we construct networks promoting cooperation. Second, we present
    a robustness result with respect to β and selection strength: Our structures promote
    cooperation for a range of these parameter values rather than specific parameter
    values. Finally, we supplement our theoretical results with simulation results
    on small population structures that show the effectiveness of our construction
    over well-studied population structures.'
acknowledgement: J.S. and K.C. were supported by the European Research Council CoG
  863818 (ForM-SMArt) and Austrian Science Fund (FWF) 10.55776/COE12.
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Jakub
  full_name: Svoboda, Jakub
  id: 130759D2-D7DD-11E9-87D2-DE0DE6697425
  last_name: Svoboda
  orcid: 0000-0002-1419-3267
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
citation:
  ama: Svoboda J, Chatterjee K. Promoters of cooperation in evolutionary games. <i>Proceedings
    of the National Academy of Sciences</i>. 2025;122(51):e2524109122. doi:<a href="https://doi.org/10.1073/pnas.2524109122">10.1073/pnas.2524109122</a>
  apa: Svoboda, J., &#38; Chatterjee, K. (2025). Promoters of cooperation in evolutionary
    games. <i>Proceedings of the National Academy of Sciences</i>. National Academy
    of Sciences. <a href="https://doi.org/10.1073/pnas.2524109122">https://doi.org/10.1073/pnas.2524109122</a>
  chicago: Svoboda, Jakub, and Krishnendu Chatterjee. “Promoters of Cooperation in
    Evolutionary Games.” <i>Proceedings of the National Academy of Sciences</i>. National
    Academy of Sciences, 2025. <a href="https://doi.org/10.1073/pnas.2524109122">https://doi.org/10.1073/pnas.2524109122</a>.
  ieee: J. Svoboda and K. Chatterjee, “Promoters of cooperation in evolutionary games,”
    <i>Proceedings of the National Academy of Sciences</i>, vol. 122, no. 51. National
    Academy of Sciences, p. e2524109122, 2025.
  ista: Svoboda J, Chatterjee K. 2025. Promoters of cooperation in evolutionary games.
    Proceedings of the National Academy of Sciences. 122(51), e2524109122.
  mla: Svoboda, Jakub, and Krishnendu Chatterjee. “Promoters of Cooperation in Evolutionary
    Games.” <i>Proceedings of the National Academy of Sciences</i>, vol. 122, no.
    51, National Academy of Sciences, 2025, p. e2524109122, doi:<a href="https://doi.org/10.1073/pnas.2524109122">10.1073/pnas.2524109122</a>.
  short: J. Svoboda, K. Chatterjee, Proceedings of the National Academy of Sciences
    122 (2025) e2524109122.
corr_author: '1'
date_created: 2025-12-28T23:01:26Z
date_published: 2025-12-15T00:00:00Z
date_updated: 2026-02-16T12:34:04Z
day: '15'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.1073/pnas.2524109122
ec_funded: 1
external_id:
  pmid:
  - '41397136'
file:
- access_level: open_access
  checksum: dd50b62a1efc28c0133fe9c11dbee53c
  content_type: application/pdf
  creator: dernst
  date_created: 2025-12-29T09:36:50Z
  date_updated: 2025-12-29T09:36:50Z
  file_id: '20860'
  file_name: 2025_PNAS_Svoboda.pdf
  file_size: 2308124
  relation: main_file
  success: 1
file_date_updated: 2025-12-29T09:36:50Z
has_accepted_license: '1'
intvolume: '       122'
issue: '51'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: e2524109122
pmid: 1
project:
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
  call_identifier: H2020
  grant_number: '863818'
  name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
publication: Proceedings of the National Academy of Sciences
publication_identifier:
  eissn:
  - 1091-6490
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Promoters of cooperation in evolutionary games
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 122
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '20858'
abstract:
- lang: eng
  text: Targeted antigen delivery to immune cells, particularly dendritic cells, has
    emerged as a promising strategy to enhance therapeutic efficacy of vaccines, while
    minimizing adverse effects associated with conventional immunization. In this
    study, we use our previously described small glycomimetic molecule that is selectively
    recognized by the Langerhans cell (LC)-specific surface receptor Langerin and
    demonstrate specific delivery of protein antigens to these specialized dendritic
    cells. Our results show that Langerin-mediated antigen delivery significantly
    enhances the immune response in vivo, resulting in increased expansion and activation
    of antigen-specific T cells, compared to immunization with unmodified antigen.
    We demonstrate the feasibility of our LC-targeted platform for immune cell-specific
    immunization with protein antigen and underscore the potential of LCs as an access
    point for next-generation vaccines and immunotherapies.
acknowledgement: This project was generously supported by Seedfinancing (grant no.
  P2282679) of the Austrian Bundesministerium für Digitalisierung und Wirtschaftsstandort
  and the Bundesministerium für Klimaschutz, Umwelt, Energie, Mobilität, Innovation,
  und Technologie, handled by the Austrian Wirtschaftsservice (aws), as well as by
  Life Science Call 2022 (grant no. FO999896442) of the Austrian Research Promotion
  Agency (FFG). We thank Mag. Michael Schunn from the PCF of the Institute of Science
  and Technology Austria for his continuous technical support.
article_processing_charge: No
article_type: original
author:
- first_name: Ramona
  full_name: Rica, Ramona
  last_name: Rica
- first_name: Klara
  full_name: Klein, Klara
  last_name: Klein
- first_name: Litty
  full_name: Johnson, Litty
  last_name: Johnson
- first_name: Gabriele
  full_name: Carta, Gabriele
  last_name: Carta
- first_name: Mirza
  full_name: Sarcevic, Mirza
  last_name: Sarcevic
- first_name: Freyja
  full_name: Langer, Freyja
  id: 3C1BE782-F248-11E8-B48F-1D18A9856A87
  last_name: Langer
- first_name: Christoph
  full_name: Rademacher, Christoph
  last_name: Rademacher
- first_name: Robert
  full_name: Wawrzinek, Robert
  last_name: Wawrzinek
- first_name: Federica
  full_name: Quattrone, Federica
  last_name: Quattrone
- first_name: Florian
  full_name: Sparber, Florian
  last_name: Sparber
citation:
  ama: Rica R, Klein K, Johnson L, et al. Langerhans cell-targeted protein delivery
    enhances antigen-specific cellular immune response. <i>Molecular Therapy</i>.
    doi:<a href="https://doi.org/10.1016/j.ymthe.2025.10.008">10.1016/j.ymthe.2025.10.008</a>
  apa: Rica, R., Klein, K., Johnson, L., Carta, G., Sarcevic, M., Langer, F., … Sparber,
    F. (n.d.). Langerhans cell-targeted protein delivery enhances antigen-specific
    cellular immune response. <i>Molecular Therapy</i>. Elsevier. <a href="https://doi.org/10.1016/j.ymthe.2025.10.008">https://doi.org/10.1016/j.ymthe.2025.10.008</a>
  chicago: Rica, Ramona, Klara Klein, Litty Johnson, Gabriele Carta, Mirza Sarcevic,
    Freyja Langer, Christoph Rademacher, Robert Wawrzinek, Federica Quattrone, and
    Florian Sparber. “Langerhans Cell-Targeted Protein Delivery Enhances Antigen-Specific
    Cellular Immune Response.” <i>Molecular Therapy</i>. Elsevier, n.d. <a href="https://doi.org/10.1016/j.ymthe.2025.10.008">https://doi.org/10.1016/j.ymthe.2025.10.008</a>.
  ieee: R. Rica <i>et al.</i>, “Langerhans cell-targeted protein delivery enhances
    antigen-specific cellular immune response,” <i>Molecular Therapy</i>. Elsevier.
  ista: Rica R, Klein K, Johnson L, Carta G, Sarcevic M, Langer F, Rademacher C, Wawrzinek
    R, Quattrone F, Sparber F. Langerhans cell-targeted protein delivery enhances
    antigen-specific cellular immune response. Molecular Therapy.
  mla: Rica, Ramona, et al. “Langerhans Cell-Targeted Protein Delivery Enhances Antigen-Specific
    Cellular Immune Response.” <i>Molecular Therapy</i>, Elsevier, doi:<a href="https://doi.org/10.1016/j.ymthe.2025.10.008">10.1016/j.ymthe.2025.10.008</a>.
  short: R. Rica, K. Klein, L. Johnson, G. Carta, M. Sarcevic, F. Langer, C. Rademacher,
    R. Wawrzinek, F. Quattrone, F. Sparber, Molecular Therapy (n.d.).
date_created: 2025-12-28T23:01:26Z
date_published: 2025-10-04T00:00:00Z
date_updated: 2025-12-29T09:55:05Z
day: '04'
department:
- _id: PreCl
doi: 10.1016/j.ymthe.2025.10.008
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1101/2025.05.05.652195
month: '10'
oa: 1
oa_version: Preprint
publication: Molecular Therapy
publication_identifier:
  eissn:
  - 1525-0024
  issn:
  - 1525-0016
publication_status: inpress
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Langerhans cell-targeted protein delivery enhances antigen-specific cellular
  immune response
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '20859'
abstract:
- lang: eng
  text: Effective immune responses rely on the efficient migration of leukocytes.
    Yet, how temperature regulates migration dynamics at the single-cell level has
    remained poorly understood. Using zebrafish embryos and mouse tissue explants,
    we found that temperature positively regulates leukocyte migration speed, exploration,
    and arrival frequencies to wounds and lymph vessels. Complementary 2D and 3D cultures
    revealed that this thermokinetic control of cell migration is conserved across
    immune cell types, independently of the 3D tissue environment. By applying precise
    (sub-)cellular temperature modulation, we identified a rapid and reversible thermo-response
    that depends on myosin II activity. Small physiological increases in temperature
    (1°C –2°C), as present during fever-like conditions, profoundly increased immune
    responses by accelerating arrival times at lymphatic vessels and tissue wounds.
    These findings identify myosin-II-dependent actomyosin contractility as a critical
    mechanical structure regulating single-cell thermo-adaptability, with physiological
    implications for tuning the speed of immune responses in vivo.
acknowledged_ssus:
- _id: NanoFab
acknowledgement: 'The authors would like to acknowledge the Super Resolution Light
  Microcopy and Nanoscopy (SLN) Facility of ICFO for their support with imaging experiments,
  Johann Osmond (Nanofabrication laboratory, ICFO) for the design and production of
  molds for generating confinement coverslip, Merche Rivas for cell culture of immune
  cells and further support from the CRG Core Facilities for Genomics and Advanced
  Light Microscopy. We would like to thank Michael Sixt for discussions on this work
  and the Quidant, Ruprecht, and Wieser lab members for critical reading of the manuscript.
  This research was supported by the Scientific Service Units (SSU) of IST-Austria
  through resources provided by the Nanofabrication Facility (NFF). C.A. acknowledges
  the funding from the European Union’s Horizon 2020 research and innovation programme
  under the Marie Skłodowska-Curie grant agreement no 847517 and V.V. from the ICFOstepstone
  – PhD Programme funded by the European Union’s Horizon 2020 research and innovation
  programme under the Marie Skłodowska-Curie grant agreement no 665884. S.W. acknowledges
  support through the Spanish Ministry of Economy and Competitiveness via MINECO’s
  Plan Nacional (BFU2017-86296-P). V.R. acknowledges funding from the European Union’s
  HORIZON-EIC-2021-PATHFINDEROPEN program under grant agreement no. 101046620 and
  European Union''s Horizon Europe program under the grant agreement no. 101072123.
  E.K. acknowledges funding by a fellowship of the Ministry of Innovation, Science
  and Research of North-Rhine-Westphalia (AZ: 421-8.03.03.02-137069) and the Deutsche
  Forschungsgemeinschaft (DFG, German Research Foundation) under Germany’s Excellence
  Strategy – EXC 2151 – 390873048 and by the TRA Life and Health (University of Bonn)
  as part of the Excellence Strategy of the federal and state governments.'
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Iván
  full_name: Company-Garrido, Iván
  last_name: Company-Garrido
- first_name: Alberto
  full_name: Zurita Carpio, Alberto
  last_name: Zurita Carpio
- first_name: Mariona
  full_name: Colomer-Rosell, Mariona
  last_name: Colomer-Rosell
- first_name: Bernard
  full_name: Ciraulo, Bernard
  last_name: Ciraulo
- first_name: Ronja
  full_name: Molkenbur, Ronja
  last_name: Molkenbur
- first_name: Peter
  full_name: Lanzerstorfer, Peter
  last_name: Lanzerstorfer
- first_name: Fabio
  full_name: Pezzano, Fabio
  last_name: Pezzano
- first_name: Costanza
  full_name: Agazzi, Costanza
  last_name: Agazzi
- first_name: Robert
  full_name: Hauschild, Robert
  id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
  last_name: Hauschild
  orcid: 0000-0001-9843-3522
- first_name: Saumey
  full_name: Jain, Saumey
  last_name: Jain
- first_name: Jeroen M.
  full_name: Jacques, Jeroen M.
  last_name: Jacques
- first_name: Valeria
  full_name: Venturini, Valeria
  last_name: Venturini
- first_name: Christian
  full_name: Knapp, Christian
  last_name: Knapp
- first_name: Yufei
  full_name: Xie, Yufei
  last_name: Xie
- first_name: Jack
  full_name: Merrin, Jack
  id: 4515C308-F248-11E8-B48F-1D18A9856A87
  last_name: Merrin
  orcid: 0000-0001-5145-4609
- first_name: Julian
  full_name: Weghuber, Julian
  last_name: Weghuber
- first_name: Marcel
  full_name: Schaaf, Marcel
  last_name: Schaaf
- first_name: Romain
  full_name: Quidant, Romain
  last_name: Quidant
- first_name: Eva
  full_name: Kiermaier, Eva
  id: 3EB04B78-F248-11E8-B48F-1D18A9856A87
  last_name: Kiermaier
  orcid: 0000-0001-6165-5738
- first_name: Jaime
  full_name: Ortega Arroyo, Jaime
  last_name: Ortega Arroyo
- first_name: Verena
  full_name: Ruprecht, Verena
  id: 4D71A03A-F248-11E8-B48F-1D18A9856A87
  last_name: Ruprecht
  orcid: 0000-0003-4088-8633
- first_name: Stefan
  full_name: Wieser, Stefan
  id: 355AA5A0-F248-11E8-B48F-1D18A9856A87
  last_name: Wieser
  orcid: 0000-0002-2670-2217
citation:
  ama: Company-Garrido I, Zurita Carpio A, Colomer-Rosell M, et al. Myosin II regulates
    cellular thermo-adaptability and the efficiency of immune responses. <i>Developmental
    Cell</i>. 2025. doi:<a href="https://doi.org/10.1016/j.devcel.2025.10.006">10.1016/j.devcel.2025.10.006</a>
  apa: Company-Garrido, I., Zurita Carpio, A., Colomer-Rosell, M., Ciraulo, B., Molkenbur,
    R., Lanzerstorfer, P., … Wieser, S. (2025). Myosin II regulates cellular thermo-adaptability
    and the efficiency of immune responses. <i>Developmental Cell</i>. Elsevier. <a
    href="https://doi.org/10.1016/j.devcel.2025.10.006">https://doi.org/10.1016/j.devcel.2025.10.006</a>
  chicago: Company-Garrido, Iván, Alberto Zurita Carpio, Mariona Colomer-Rosell, Bernard
    Ciraulo, Ronja Molkenbur, Peter Lanzerstorfer, Fabio Pezzano, et al. “Myosin II
    Regulates Cellular Thermo-Adaptability and the Efficiency of Immune Responses.”
    <i>Developmental Cell</i>. Elsevier, 2025. <a href="https://doi.org/10.1016/j.devcel.2025.10.006">https://doi.org/10.1016/j.devcel.2025.10.006</a>.
  ieee: I. Company-Garrido <i>et al.</i>, “Myosin II regulates cellular thermo-adaptability
    and the efficiency of immune responses,” <i>Developmental Cell</i>. Elsevier,
    2025.
  ista: Company-Garrido I, Zurita Carpio A, Colomer-Rosell M, Ciraulo B, Molkenbur
    R, Lanzerstorfer P, Pezzano F, Agazzi C, Hauschild R, Jain S, Jacques JM, Venturini
    V, Knapp C, Xie Y, Merrin J, Weghuber J, Schaaf M, Quidant R, Kiermaier E, Ortega
    Arroyo J, Ruprecht V, Wieser S. 2025. Myosin II regulates cellular thermo-adaptability
    and the efficiency of immune responses. Developmental Cell.
  mla: Company-Garrido, Iván, et al. “Myosin II Regulates Cellular Thermo-Adaptability
    and the Efficiency of Immune Responses.” <i>Developmental Cell</i>, Elsevier,
    2025, doi:<a href="https://doi.org/10.1016/j.devcel.2025.10.006">10.1016/j.devcel.2025.10.006</a>.
  short: I. Company-Garrido, A. Zurita Carpio, M. Colomer-Rosell, B. Ciraulo, R. Molkenbur,
    P. Lanzerstorfer, F. Pezzano, C. Agazzi, R. Hauschild, S. Jain, J.M. Jacques,
    V. Venturini, C. Knapp, Y. Xie, J. Merrin, J. Weghuber, M. Schaaf, R. Quidant,
    E. Kiermaier, J. Ortega Arroyo, V. Ruprecht, S. Wieser, Developmental Cell (2025).
date_created: 2025-12-28T23:01:27Z
date_published: 2025-11-04T00:00:00Z
date_updated: 2025-12-29T09:23:58Z
day: '04'
ddc:
- '570'
department:
- _id: Bio
- _id: NanoFab
doi: 10.1016/j.devcel.2025.10.006
external_id:
  pmid:
  - '41192429'
has_accepted_license: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.devcel.2025.10.006
month: '11'
oa: 1
oa_version: Published Version
pmid: 1
publication: Developmental Cell
publication_identifier:
  eissn:
  - 1878-1551
  issn:
  - 1534-5807
publication_status: epub_ahead
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Myosin II regulates cellular thermo-adaptability and the efficiency of immune
  responses
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '20866'
abstract:
- lang: eng
  text: In this work, we present hypernode automata as a specification formalism for
    hyperproperties of systems whose executions may be misaligned among themselves,
    such as concurrent systems. These automata consist of nodes labeled with hypernode
    logic formulas and transitions marked with synchronizing actions. Hypernode logic
    formulas establish relations between sequences of variable values among different
    system executions. This logic enables both synchronous and asynchronous analysis
    of traces. In its asynchronous view on execution traces, hypernode formulas establish
    relations on the order of value changes for each variable without correlating
    their timing. In both views, the analysis of different execution traces is synchronized
    through the transitions of hypernode automata. By combining logic’s declarative
    nature with automata’s procedural power, hypernode automata seamlessly integrate
    asynchronicity requirements at the node level with synchronicity between node
    transitions. We show that the model-checking problem for hypernode automata is
    decidable for specifications where each node specifies either a synchronous or
    an asynchronous requirement for the system’s executions, but not both.
acknowledgement: This work was supported in part by the Austrian Science Fund (FWF)
  SFB project SpyCoDe 10.55776/F85, by the FWF projects ZK-35 and W1255-N23, and by
  the ERC Advanced Grant VAMOS 101020093. Open access funding provided by Institute
  of Science and Technology (IST Austria).
article_number: '43'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Ezio
  full_name: Bartocci, Ezio
  last_name: Bartocci
- first_name: Marek
  full_name: Chalupa, Marek
  id: 87e34708-d6c6-11ec-9f5b-9391e7be2463
  last_name: Chalupa
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
- first_name: Dejan
  full_name: Nickovic, Dejan
  id: 41BCEE5C-F248-11E8-B48F-1D18A9856A87
  last_name: Nickovic
- first_name: Ana
  full_name: Oliveira da Costa, Ana
  id: f347ec37-6676-11ee-b395-a888cb7b4fb4
  last_name: Oliveira da Costa
  orcid: 0000-0002-8741-5799
citation:
  ama: Bartocci E, Chalupa M, Henzinger TA, Nickovic D, Oliveira da Costa A. Hypernode
    automata. <i>Acta Informatica</i>. 2025;62(4). doi:<a href="https://doi.org/10.1007/s00236-025-00509-8">10.1007/s00236-025-00509-8</a>
  apa: Bartocci, E., Chalupa, M., Henzinger, T. A., Nickovic, D., &#38; Oliveira da
    Costa, A. (2025). Hypernode automata. <i>Acta Informatica</i>. Springer Nature.
    <a href="https://doi.org/10.1007/s00236-025-00509-8">https://doi.org/10.1007/s00236-025-00509-8</a>
  chicago: Bartocci, Ezio, Marek Chalupa, Thomas A Henzinger, Dejan Nickovic, and
    Ana Oliveira da Costa. “Hypernode Automata.” <i>Acta Informatica</i>. Springer
    Nature, 2025. <a href="https://doi.org/10.1007/s00236-025-00509-8">https://doi.org/10.1007/s00236-025-00509-8</a>.
  ieee: E. Bartocci, M. Chalupa, T. A. Henzinger, D. Nickovic, and A. Oliveira da
    Costa, “Hypernode automata,” <i>Acta Informatica</i>, vol. 62, no. 4. Springer
    Nature, 2025.
  ista: Bartocci E, Chalupa M, Henzinger TA, Nickovic D, Oliveira da Costa A. 2025.
    Hypernode automata. Acta Informatica. 62(4), 43.
  mla: Bartocci, Ezio, et al. “Hypernode Automata.” <i>Acta Informatica</i>, vol.
    62, no. 4, 43, Springer Nature, 2025, doi:<a href="https://doi.org/10.1007/s00236-025-00509-8">10.1007/s00236-025-00509-8</a>.
  short: E. Bartocci, M. Chalupa, T.A. Henzinger, D. Nickovic, A. Oliveira da Costa,
    Acta Informatica 62 (2025).
corr_author: '1'
date_created: 2025-12-29T12:07:12Z
date_published: 2025-12-09T00:00:00Z
date_updated: 2026-01-05T12:27:41Z
day: '09'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1007/s00236-025-00509-8
ec_funded: 1
external_id:
  arxiv:
  - '2305.02836'
file:
- access_level: open_access
  checksum: 06ed45a1218ad8464818803ae2968aaf
  content_type: application/pdf
  creator: dernst
  date_created: 2026-01-05T12:26:43Z
  date_updated: 2026-01-05T12:26:43Z
  file_id: '20944'
  file_name: 2025_ActaInformatica_Bartocci.pdf
  file_size: 7117003
  relation: main_file
  success: 1
file_date_updated: 2026-01-05T12:26:43Z
has_accepted_license: '1'
intvolume: '        62'
issue: '4'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
- _id: 34a1b658-11ca-11ed-8bc3-c75229f0241e
  grant_number: F8502
  name: Interface Theory for Security and Privacy
publication: Acta Informatica
publication_identifier:
  eissn:
  - 1432-0525
  issn:
  - 0001-5903
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  record:
  - id: '14405'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: Hypernode automata
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 62
year: '2025'
...
---
OA_place: publisher
OA_type: diamond
PlanS_conform: '1'
_id: '20867'
abstract:
- lang: eng
  text: We discuss the embeddability of subspaces of the Gromov–Hausdorff space, which
    consists of isometry classes of compact metric spaces endowed with the Gromov–Hausdorff
    distance, into Hilbert spaces. These embeddings are particularly valuable for
    applications to topological data analysis. We prove that its subspace consisting
    of metric spaces with at most n points has asymptotic dimension n(n−1)∕2. Thus,
    there exists a coarse embedding of that space into a Hilbert space. On the contrary,
    if the number of points is not bounded, then the subspace cannot be coarsely embedded
    into any uniformly convex Banach space and so, in particular, into any Hilbert
    space. Furthermore, we prove that, even if we restrict to finite metric spaces
    whose diameter is bounded by some constant, the subspace still cannot be bi-Lipschitz
    embedded into any finite-dimensional Hilbert space. We obtain both nonembeddability
    results by finding obstructions to coarse and bi-Lipschitz embeddings in families
    of isometry classes of finite subsets of the real line endowed with the Euclidean–Hausdorff
    distance.
acknowledgement: "The author was supported by the FWF Grant, Project number I4245-N35.
  The author would like to thank Thomas Weighill for the helpful discussions around
  Theorem 3.10, and Takamitsu Yamauchi for bringing to my attention the fundamental
  reference [35]. Furthermore, the author\r\nis thankful for the detailed and helpful
  comments of the reviewer of this manuscript."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Nicolò
  full_name: Zava, Nicolò
  id: c8b3499c-7a77-11eb-b046-aa368cbbf2ad
  last_name: Zava
  orcid: 0000-0001-8686-1888
citation:
  ama: Zava N. Coarse and bi-Lipschitz embeddability of subspaces of the Gromov–Hausdorff
    space into Hilbert spaces. <i>Algebraic &#38; Geometric Topology</i>. 2025;25(8):5153-5174.
    doi:<a href="https://doi.org/10.2140/agt.2025.25.5153">10.2140/agt.2025.25.5153</a>
  apa: Zava, N. (2025). Coarse and bi-Lipschitz embeddability of subspaces of the
    Gromov–Hausdorff space into Hilbert spaces. <i>Algebraic &#38; Geometric Topology</i>.
    Mathematical Sciences Publishers. <a href="https://doi.org/10.2140/agt.2025.25.5153">https://doi.org/10.2140/agt.2025.25.5153</a>
  chicago: Zava, Nicolò. “Coarse and Bi-Lipschitz Embeddability of Subspaces of the
    Gromov–Hausdorff Space into Hilbert Spaces.” <i>Algebraic &#38; Geometric Topology</i>.
    Mathematical Sciences Publishers, 2025. <a href="https://doi.org/10.2140/agt.2025.25.5153">https://doi.org/10.2140/agt.2025.25.5153</a>.
  ieee: N. Zava, “Coarse and bi-Lipschitz embeddability of subspaces of the Gromov–Hausdorff
    space into Hilbert spaces,” <i>Algebraic &#38; Geometric Topology</i>, vol. 25,
    no. 8. Mathematical Sciences Publishers, pp. 5153–5174, 2025.
  ista: Zava N. 2025. Coarse and bi-Lipschitz embeddability of subspaces of the Gromov–Hausdorff
    space into Hilbert spaces. Algebraic &#38; Geometric Topology. 25(8), 5153–5174.
  mla: Zava, Nicolò. “Coarse and Bi-Lipschitz Embeddability of Subspaces of the Gromov–Hausdorff
    Space into Hilbert Spaces.” <i>Algebraic &#38; Geometric Topology</i>, vol. 25,
    no. 8, Mathematical Sciences Publishers, 2025, pp. 5153–74, doi:<a href="https://doi.org/10.2140/agt.2025.25.5153">10.2140/agt.2025.25.5153</a>.
  short: N. Zava, Algebraic &#38; Geometric Topology 25 (2025) 5153–5174.
corr_author: '1'
date_created: 2025-12-29T12:09:09Z
date_published: 2025-11-20T00:00:00Z
date_updated: 2026-01-05T12:19:09Z
day: '20'
ddc:
- '500'
department:
- _id: HeEd
doi: 10.2140/agt.2025.25.5153
external_id:
  arxiv:
  - '2303.04730'
file:
- access_level: open_access
  checksum: 1e05b4f17a44500ae1ae1e21bc636f6a
  content_type: application/pdf
  creator: dernst
  date_created: 2026-01-05T12:16:38Z
  date_updated: 2026-01-05T12:16:38Z
  file_id: '20943'
  file_name: 2025_AlgebraicGeomTopology_Zava.pdf
  file_size: 574389
  relation: main_file
  success: 1
file_date_updated: 2026-01-05T12:16:38Z
has_accepted_license: '1'
intvolume: '        25'
issue: '8'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 5153-5174
project:
- _id: 26AD5D90-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I04245
  name: Algebraic Footprints of Geometric Features in Homology
publication: Algebraic & Geometric Topology
publication_identifier:
  eissn:
  - 1472-2739
  issn:
  - 1472-2747
publication_status: published
publisher: Mathematical Sciences Publishers
quality_controlled: '1'
scopus_import: '1'
status: public
title: Coarse and bi-Lipschitz embeddability of subspaces of the Gromov–Hausdorff
  space into Hilbert spaces
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 25
year: '2025'
...
---
OA_type: closed access
_id: '20868'
abstract:
- lang: eng
  text: Residents of low-latitude megacities face growing vulnerability to humid-heat
    stress under urbanization and global warming, yet limited research has assessed
    the morbidity burden of mental and behavioral disorders (MBDs) linked to humid-heat
    exposures in these cities. Here we quantify the hospital admissions of MBDs in
    Shanghai, a megacity of over 25 million inhabitants, attributable to humid heat,
    and project future burdens under various greenhouse gas (GHG)-emission and population
    scenarios. Humid heat drives a higher morbidity burden than high temperature alone,
    especially in humid-heat nights. Without population change, the humid-heat-related
    morbidity burden of MBDs would increase by 68.2% (95% empirical confidence interval
    56.7%–81.6%) under the highest-GHG-emission scenario by the 2090s, while 8,465
    (95% empirical confidence interval 6,928–10,053) cases would be avoided by reducing
    emissions to the lowest pathway. With projected population decline, the attributable
    hospital admissions will decrease toward century’s end. These findings highlight
    the benefit of GHG mitigation in reducing the growing MBD risks posed by extreme
    humid heat.
acknowledgement: 'This research was supported by the National Natural Science Foundation
  of China (grants 42288101 and 42175066) and Shanghai International Science and Technology
  Partnership Project (grant 21230780200). G.S. is supported by the China Brain Project
  (grant 2025ZD0215100), the National Natural Science Foundation of China (grant 82150710554),
  the Chinese National Key Project (grant 2023YFE0199700), the National Natural Science
  Foundation of China (grant W2541022) and the EC Horizon Europe: environMENTAL project.'
article_processing_charge: No
article_type: original
author:
- first_name: Chen
  full_name: Liang, Chen
  last_name: Liang
- first_name: Jiacan
  full_name: Yuan, Jiacan
  last_name: Yuan
- first_name: Renhe
  full_name: Zhang, Renhe
  last_name: Zhang
- first_name: Xu
  full_name: Tang, Xu
  last_name: Tang
- first_name: Gunter
  full_name: Schumann, Gunter
  last_name: Schumann
- first_name: Esther
  full_name: Hitchen, Esther
  last_name: Hitchen
- first_name: Elli
  full_name: Polemiti, Elli
  last_name: Polemiti
- first_name: Emin
  full_name: Serin, Emin
  last_name: Serin
- first_name: Hedi
  full_name: Kebir, Hedi
  last_name: Kebir
- first_name: Tristram A.
  full_name: Lett, Tristram A.
  last_name: Lett
- first_name: Nilakshi
  full_name: Vaidya, Nilakshi
  last_name: Vaidya
- first_name: Jean-Charles
  full_name: Roy, Jean-Charles
  last_name: Roy
- first_name: Henrik
  full_name: Walter, Henrik
  last_name: Walter
- first_name: Andreas
  full_name: Heinz, Andreas
  last_name: Heinz
- first_name: Markus
  full_name: Ralser, Markus
  last_name: Ralser
- first_name: Sven
  full_name: Twardziok, Sven
  last_name: Twardziok
- first_name: Roland
  full_name: Eils, Roland
  last_name: Eils
- first_name: Marcel
  full_name: Jentsch, Marcel
  last_name: Jentsch
- first_name: Ulrike-Helene
  full_name: Taron, Ulrike-Helene
  last_name: Taron
- first_name: Tatjana
  full_name: Schütz, Tatjana
  last_name: Schütz
- first_name: Kerstin
  full_name: Schepanski, Kerstin
  last_name: Schepanski
- first_name: Tobias
  full_name: Banaschewski, Tobias
  last_name: Banaschewski
- first_name: Maja
  full_name: Neidhart, Maja
  last_name: Neidhart
- first_name: Andreas
  full_name: Meyer-Lindenberg, Andreas
  last_name: Meyer-Lindenberg
- first_name: Heike
  full_name: Tost, Heike
  last_name: Tost
- first_name: Nathalie
  full_name: Holz, Nathalie
  last_name: Holz
- first_name: Emanuel
  full_name: Schwarz, Emanuel
  last_name: Schwarz
- first_name: Argyris
  full_name: Stringaris, Argyris
  last_name: Stringaris
- first_name: Nina
  full_name: Christmann, Nina
  last_name: Christmann
- first_name: Karina
  full_name: Janson, Karina
  last_name: Janson
- first_name: Frauke
  full_name: Nees, Frauke
  last_name: Nees
- first_name: Maja
  full_name: Neidhart, Maja
  last_name: Neidhart
- first_name: Beke
  full_name: Seefried, Beke
  last_name: Seefried
- first_name: Rieke
  full_name: Aden, Rieke
  last_name: Aden
- first_name: Ole A.
  full_name: Andreassen, Ole A.
  last_name: Andreassen
- first_name: Lars T.
  full_name: Westlye, Lars T.
  last_name: Westlye
- first_name: Dennis
  full_name: van der Meer, Dennis
  last_name: van der Meer
- first_name: Sara
  full_name: Fernández-Cabello, Sara
  last_name: Fernández-Cabello
- first_name: Rikka
  full_name: Kjelkenes, Rikka
  last_name: Kjelkenes
- first_name: Helga
  full_name: Ask, Helga
  last_name: Ask
- first_name: Michael
  full_name: Rapp, Michael
  last_name: Rapp
- first_name: Mira
  full_name: Tschorn, Mira
  last_name: Tschorn
- first_name: Sarah Jane
  full_name: Böttger, Sarah Jane
  last_name: Böttger
- first_name: Andre
  full_name: Marquand, Andre
  last_name: Marquand
- first_name: Antoine
  full_name: Bernas, Antoine
  last_name: Bernas
- first_name: Gaia
  full_name: Novarino, Gaia
  id: 3E57A680-F248-11E8-B48F-1D18A9856A87
  last_name: Novarino
  orcid: 0000-0002-7673-7178
- first_name: Mel
  full_name: Slater, Mel
  last_name: Slater
- first_name: Jaime
  full_name: Gallego, Jaime
  last_name: Gallego
- first_name: Álvaro
  full_name: Pastor, Álvaro
  last_name: Pastor
- first_name: Guillem
  full_name: Feixas, Guillem
  last_name: Feixas
- first_name: Francisco José
  full_name: Eiroa-Orosa, Francisco José
  last_name: Eiroa-Orosa
- first_name: Markus M.
  full_name: Nöthen, Markus M.
  last_name: Nöthen
- first_name: Andreas J.
  full_name: Forstner, Andreas J.
  last_name: Forstner
- first_name: Isabelle
  full_name: Claus, Isabelle
  last_name: Claus
- first_name: Carina
  full_name: Mathey, Carina
  last_name: Mathey
- first_name: Stefanie
  full_name: Heilmann-Heimbach, Stefanie
  last_name: Heilmann-Heimbach
- first_name: Per
  full_name: Hoffmann, Per
  last_name: Hoffmann
- first_name: Abigail
  full_name: Miller, Abigail
  last_name: Miller
- first_name: Peter
  full_name: Sommer, Peter
  last_name: Sommer
- first_name: Karen
  full_name: Schmitt, Karen
  last_name: Schmitt
- first_name: Johannes
  full_name: Wilbertz, Johannes
  last_name: Wilbertz
- first_name: Myrto
  full_name: Patraskaki, Myrto
  last_name: Patraskaki
- first_name: Viktor
  full_name: Jirsa, Viktor
  last_name: Jirsa
- first_name: Spase
  full_name: Petkoski, Spase
  last_name: Petkoski
- first_name: Anastasios-Polykarpos
  full_name: Athanasiadis, Anastasios-Polykarpos
  last_name: Athanasiadis
- first_name: Bernhard
  full_name: Spanlang, Bernhard
  last_name: Spanlang
- first_name: Charlie
  full_name: Pearmund, Charlie
  last_name: Pearmund
- first_name: Sören
  full_name: Hese, Sören
  last_name: Hese
- first_name: Paul
  full_name: Renner, Paul
  last_name: Renner
- first_name: Tianye
  full_name: Jia, Tianye
  last_name: Jia
- first_name: Xiao
  full_name: Chang, Xiao
  last_name: Chang
- first_name: Yuxiang
  full_name: Dai, Yuxiang
  last_name: Dai
- first_name: Yunman
  full_name: Xia, Yunman
  last_name: Xia
- first_name: Yuzhu
  full_name: Li, Yuzhu
  last_name: Li
- first_name: Yanqing
  full_name: Zhang, Yanqing
  last_name: Zhang
- first_name: Vince
  full_name: Calhoun, Vince
  last_name: Calhoun
- first_name: Paul
  full_name: Thompson, Paul
  last_name: Thompson
- first_name: Nicholas
  full_name: Clinton, Nicholas
  last_name: Clinton
- first_name: Sylvane
  full_name: Desrivières, Sylvane
  last_name: Desrivières
- first_name: Kofoworola
  full_name: Agunbiade, Kofoworola
  last_name: Agunbiade
- first_name: Xinyang
  full_name: Yu, Xinyang
  last_name: Yu
- first_name: Zuo
  full_name: Zhang, Zuo
  last_name: Zhang
- first_name: Di
  full_name: Chen, Di
  last_name: Chen
- first_name: Allan H.
  full_name: Young, Allan H.
  last_name: Young
- first_name: Ameli
  full_name: Schwalber, Ameli
  last_name: Schwalber
- first_name: Vanessa
  full_name: Köhler, Vanessa
  last_name: Köhler
- first_name: Bernd
  full_name: Stahl, Bernd
  last_name: Stahl
- first_name: George
  full_name: Ogoh, George
  last_name: Ogoh
- first_name: Tamara
  full_name: Schikowski, Tamara
  last_name: Schikowski
- first_name: Ragnhild
  full_name: Brandlistuen, Ragnhild
  last_name: Brandlistuen
citation:
  ama: Liang C, Yuan J, Zhang R, et al. Projecting the morbidity burden of mental
    and behavioral disorders associated with increasing humid heat in Shanghai. <i>Nature
    Mental Health</i>. 2025;3(12):1532-1544. doi:<a href="https://doi.org/10.1038/s44220-025-00519-y">10.1038/s44220-025-00519-y</a>
  apa: Liang, C., Yuan, J., Zhang, R., Tang, X., Schumann, G., Hitchen, E., … Brandlistuen,
    R. (2025). Projecting the morbidity burden of mental and behavioral disorders
    associated with increasing humid heat in Shanghai. <i>Nature Mental Health</i>.
    Springer Nature. <a href="https://doi.org/10.1038/s44220-025-00519-y">https://doi.org/10.1038/s44220-025-00519-y</a>
  chicago: Liang, Chen, Jiacan Yuan, Renhe Zhang, Xu Tang, Gunter Schumann, Esther
    Hitchen, Elli Polemiti, et al. “Projecting the Morbidity Burden of Mental and
    Behavioral Disorders Associated with Increasing Humid Heat in Shanghai.” <i>Nature
    Mental Health</i>. Springer Nature, 2025. <a href="https://doi.org/10.1038/s44220-025-00519-y">https://doi.org/10.1038/s44220-025-00519-y</a>.
  ieee: C. Liang <i>et al.</i>, “Projecting the morbidity burden of mental and behavioral
    disorders associated with increasing humid heat in Shanghai,” <i>Nature Mental
    Health</i>, vol. 3, no. 12. Springer Nature, pp. 1532–1544, 2025.
  ista: Liang C, Yuan J, Zhang R, Tang X, Schumann G, Hitchen E, Polemiti E, Serin
    E, Kebir H, Lett TA, Vaidya N, Roy J-C, Walter H, Heinz A, Ralser M, Twardziok
    S, Eils R, Jentsch M, Taron U-H, Schütz T, Schepanski K, Banaschewski T, Neidhart
    M, Meyer-Lindenberg A, Tost H, Holz N, Schwarz E, Stringaris A, Christmann N,
    Janson K, Nees F, Neidhart M, Seefried B, Aden R, Andreassen OA, Westlye LT, van
    der Meer D, Fernández-Cabello S, Kjelkenes R, Ask H, Rapp M, Tschorn M, Böttger
    SJ, Marquand A, Bernas A, Novarino G, Slater M, Gallego J, Pastor Á, Feixas G,
    Eiroa-Orosa FJ, Nöthen MM, Forstner AJ, Claus I, Mathey C, Heilmann-Heimbach S,
    Hoffmann P, Miller A, Sommer P, Schmitt K, Wilbertz J, Patraskaki M, Jirsa V,
    Petkoski S, Athanasiadis A-P, Spanlang B, Pearmund C, Hese S, Renner P, Jia T,
    Chang X, Dai Y, Xia Y, Li Y, Zhang Y, Calhoun V, Thompson P, Clinton N, Desrivières
    S, Agunbiade K, Yu X, Zhang Z, Chen D, Young AH, Schwalber A, Köhler V, Stahl
    B, Ogoh G, Schikowski T, Brandlistuen R. 2025. Projecting the morbidity burden
    of mental and behavioral disorders associated with increasing humid heat in Shanghai.
    Nature Mental Health. 3(12), 1532–1544.
  mla: Liang, Chen, et al. “Projecting the Morbidity Burden of Mental and Behavioral
    Disorders Associated with Increasing Humid Heat in Shanghai.” <i>Nature Mental
    Health</i>, vol. 3, no. 12, Springer Nature, 2025, pp. 1532–44, doi:<a href="https://doi.org/10.1038/s44220-025-00519-y">10.1038/s44220-025-00519-y</a>.
  short: C. Liang, J. Yuan, R. Zhang, X. Tang, G. Schumann, E. Hitchen, E. Polemiti,
    E. Serin, H. Kebir, T.A. Lett, N. Vaidya, J.-C. Roy, H. Walter, A. Heinz, M. Ralser,
    S. Twardziok, R. Eils, M. Jentsch, U.-H. Taron, T. Schütz, K. Schepanski, T. Banaschewski,
    M. Neidhart, A. Meyer-Lindenberg, H. Tost, N. Holz, E. Schwarz, A. Stringaris,
    N. Christmann, K. Janson, F. Nees, M. Neidhart, B. Seefried, R. Aden, O.A. Andreassen,
    L.T. Westlye, D. van der Meer, S. Fernández-Cabello, R. Kjelkenes, H. Ask, M.
    Rapp, M. Tschorn, S.J. Böttger, A. Marquand, A. Bernas, G. Novarino, M. Slater,
    J. Gallego, Á. Pastor, G. Feixas, F.J. Eiroa-Orosa, M.M. Nöthen, A.J. Forstner,
    I. Claus, C. Mathey, S. Heilmann-Heimbach, P. Hoffmann, A. Miller, P. Sommer,
    K. Schmitt, J. Wilbertz, M. Patraskaki, V. Jirsa, S. Petkoski, A.-P. Athanasiadis,
    B. Spanlang, C. Pearmund, S. Hese, P. Renner, T. Jia, X. Chang, Y. Dai, Y. Xia,
    Y. Li, Y. Zhang, V. Calhoun, P. Thompson, N. Clinton, S. Desrivières, K. Agunbiade,
    X. Yu, Z. Zhang, D. Chen, A.H. Young, A. Schwalber, V. Köhler, B. Stahl, G. Ogoh,
    T. Schikowski, R. Brandlistuen, Nature Mental Health 3 (2025) 1532–1544.
date_created: 2025-12-29T12:11:28Z
date_published: 2025-12-01T00:00:00Z
date_updated: 2026-01-05T12:02:29Z
day: '01'
department:
- _id: GaNo
doi: 10.1038/s44220-025-00519-y
intvolume: '         3'
issue: '12'
language:
- iso: eng
month: '12'
oa_version: None
page: 1532-1544
project:
- _id: 349d1832-11ca-11ed-8bc3-d79b574010e0
  grant_number: '101057429'
  name: Reducing the impact of major environmental challenges on mental health
publication: Nature Mental Health
publication_identifier:
  issn:
  - 2731-6076
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Projecting the morbidity burden of mental and behavioral disorders associated
  with increasing humid heat in Shanghai
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 3
year: '2025'
...
---
OA_type: closed access
_id: '20869'
abstract:
- lang: eng
  text: "Premise: What maintains trait divergence in the face of gene flow? Two varieties
    of wild snapdragon (Antirrhinum majus) characterized by divergent flower color
    hybridize in their native range. Selection on flower color genes is indicated
    by sharp clines, but the selective agents have not been demonstrated. Although
    previous work has focused on pollinators, pigmentation genes can also contribute
    to abiotic stress tolerance. We hypothesized that pigmentation in A. majus mediates
    stress tolerance, which could contribute to hybrid zone maintenance through parental
    niche divergence or hybrid maladaptation. Specifically, we tested whether morphotype
    mediates drought tolerance in an experiment comparing magenta-flowered var. pseudomajus,
    yellow-flowered var. striatum, and their pink-flowered hybrid cross.\r\nMethods:
    We experimentally compared drought tolerance of each morphotype from allopatric
    crosses within and between varieties using three greenhouse treatments. Control
    plants were watered as needed, while drought-treated plants were watered half
    as often, either from the transplant stage (“early” drought), or from flowering
    onset (“late” drought).\r\nResults: Parental morphotypes responded identically
    to drought in fitness and most phenotypic traits. However, hybrids had lower survival
    (14%) under late drought stress than parental morphotypes (70%). All hybrids that
    flowered in the late drought treatment died, compared to ~20% of flowering parental
    morphotypes.\r\nConclusions: Hybrid maladaptation to abiotic stress could potentially
    contribute to flower color divergence in the face of gene flow in A. majus. Further
    research should test the relevance of our results to field conditions and explicitly
    probe the role of flower color genes in drought tolerance."
acknowledgement: Thank you to Doug Schemske and Nick Barton forcritically reviewing
  the manuscript, Beatriz Pablo Car-mona for assisting with data collection, Melinda
  Pickupand Eva Cereghetti for seedlings, and Louise Arathoon,Ksenia Khudiakova, Georg
  Rieckh, Daria Shiplina, andAnja Westram for help with experimental maintenance.We
  sincerely thank the Associate Editor Brenda Grewelland two anonymous reviewers for
  their thoughtfulcomments and suggestions, which substantially improved the clarity
  and quality of our manuscript. C.B. receivedfunding from the European Union's Horizon
  2020 researchand innovation programme under the Marie Skłodowska‐Curie Grant Agreement
  No. 754411
article_number: e70129
article_processing_charge: No
article_type: original
author:
- first_name: Alexandre
  full_name: Fuster‐Calvo, Alexandre
  last_name: Fuster‐Calvo
- first_name: Coline C.
  full_name: Jaworski, Coline C.
  last_name: Jaworski
- first_name: Thomas
  full_name: Ellis, Thomas
  id: 3153D6D4-F248-11E8-B48F-1D18A9856A87
  last_name: Ellis
  orcid: 0000-0002-8511-0254
- first_name: Carina
  full_name: Baskett, Carina
  id: 3B4A7CE2-F248-11E8-B48F-1D18A9856A87
  last_name: Baskett
  orcid: 0000-0002-7354-8574
citation:
  ama: Fuster‐Calvo A, Jaworski CC, Ellis T, Baskett C. Reduced fitness under drought
    stress in F1 hybrids of Antirrhinum majus varieties with divergent flower colors.
    <i>American Journal of Botany</i>. 2025;112(12). doi:<a href="https://doi.org/10.1002/ajb2.70129">10.1002/ajb2.70129</a>
  apa: Fuster‐Calvo, A., Jaworski, C. C., Ellis, T., &#38; Baskett, C. (2025). Reduced
    fitness under drought stress in F1 hybrids of Antirrhinum majus varieties with
    divergent flower colors. <i>American Journal of Botany</i>. Wiley. <a href="https://doi.org/10.1002/ajb2.70129">https://doi.org/10.1002/ajb2.70129</a>
  chicago: Fuster‐Calvo, Alexandre, Coline C. Jaworski, Thomas Ellis, and Carina Baskett.
    “Reduced Fitness under Drought Stress in F1 Hybrids of Antirrhinum Majus Varieties
    with Divergent Flower Colors.” <i>American Journal of Botany</i>. Wiley, 2025.
    <a href="https://doi.org/10.1002/ajb2.70129">https://doi.org/10.1002/ajb2.70129</a>.
  ieee: A. Fuster‐Calvo, C. C. Jaworski, T. Ellis, and C. Baskett, “Reduced fitness
    under drought stress in F1 hybrids of Antirrhinum majus varieties with divergent
    flower colors,” <i>American Journal of Botany</i>, vol. 112, no. 12. Wiley, 2025.
  ista: Fuster‐Calvo A, Jaworski CC, Ellis T, Baskett C. 2025. Reduced fitness under
    drought stress in F1 hybrids of Antirrhinum majus varieties with divergent flower
    colors. American Journal of Botany. 112(12), e70129.
  mla: Fuster‐Calvo, Alexandre, et al. “Reduced Fitness under Drought Stress in F1
    Hybrids of Antirrhinum Majus Varieties with Divergent Flower Colors.” <i>American
    Journal of Botany</i>, vol. 112, no. 12, e70129, Wiley, 2025, doi:<a href="https://doi.org/10.1002/ajb2.70129">10.1002/ajb2.70129</a>.
  short: A. Fuster‐Calvo, C.C. Jaworski, T. Ellis, C. Baskett, American Journal of
    Botany 112 (2025).
date_created: 2025-12-29T12:14:26Z
date_published: 2025-12-01T00:00:00Z
date_updated: 2026-01-05T11:56:22Z
day: '01'
department:
- _id: NiBa
doi: 10.1002/ajb2.70129
ec_funded: 1
external_id:
  pmid:
  - '41327576 '
intvolume: '       112'
issue: '12'
language:
- iso: eng
month: '12'
oa_version: None
pmid: 1
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: American Journal of Botany
publication_identifier:
  eissn:
  - 1537-2197
  issn:
  - 0002-9122
publication_status: published
publisher: Wiley
quality_controlled: '1'
related_material:
  link:
  - relation: software
    url: https://github.com/Alex-Fuster/hybrids_drought
scopus_import: '1'
status: public
title: Reduced fitness under drought stress in F1 hybrids of Antirrhinum majus varieties
  with divergent flower colors
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 112
year: '2025'
...
---
OA_type: closed access
_id: '20870'
abstract:
- lang: eng
  text: RNA sequencing (RNA-seq) methodologies have evolved rapidly, offering powerful
    tools to study gene expression, transcriptome dynamics, and molecular mechanisms
    in various biological contexts. However, the complexity of these approaches poses
    challenges in data interpretation, sensitivity, and applicability. This chapter
    provides a comprehensive overview of RNA-seq methodologies, highlighting their
    advantages, limitations, and applications, particularly in cardiovascular research.
    Bulk RNA sequencing enables high-throughput gene expression profiling but lacks
    the resolution to capture cellular heterogeneity and spatial context. Direct RNA
    sequencing preserves native RNA modifications, offering insights into post-transcriptional
    regulation, though it remains technically challenging. Single-cell RNA sequencing
    (scRNA-seq) and spatial transcriptomics (ST) bridge these gaps by resolving transcriptomic
    complexity at the cellular level and within tissue architecture, providing crucial
    insights into disease mechanisms such as atherosclerosis. By summarizing the strengths
    and limitations of these methodologies, this chapter aims to guide researchers
    in selecting the most suitable transcriptomic approach for their studies, ultimately
    advancing precision medicine and biomarker discovery in cardiovascular disease.
article_processing_charge: No
author:
- first_name: Victoria
  full_name: Stopa, Victoria
  last_name: Stopa
- first_name: Miron
  full_name: Sopić, Miron
  last_name: Sopić
- first_name: Guanliang
  full_name: Li, Guanliang
  last_name: Li
- first_name: Judith
  full_name: Sluimer, Judith
  last_name: Sluimer
- first_name: José
  full_name: Basílio, José
  last_name: Basílio
- first_name: Sander W.
  full_name: van der Laan, Sander W.
  last_name: van der Laan
- first_name: David P.
  full_name: Kreil, David P.
  last_name: Kreil
- first_name: Yvan
  full_name: Devaux, Yvan
  last_name: Devaux
- first_name: Bernhard
  full_name: Hochreiter, Bernhard
  id: e6cab3de-17f6-11ed-9210-c1e42e045e9d
  last_name: Hochreiter
citation:
  ama: 'Stopa V, Sopić M, Li G, et al. Essentials of transcriptomic methods: Navigating
    through RNA sequencing and beyond. In: Devaux Y, Sopic M, eds. <i>Transcriptomics
    in Atherosclerosis</i>. Elsevier; 2025:131-172. doi:<a href="https://doi.org/10.1016/b978-0-443-33064-3.00016-5">10.1016/b978-0-443-33064-3.00016-5</a>'
  apa: 'Stopa, V., Sopić, M., Li, G., Sluimer, J., Basílio, J., van der Laan, S. W.,
    … Hochreiter, B. (2025). Essentials of transcriptomic methods: Navigating through
    RNA sequencing and beyond. In Y. Devaux &#38; M. Sopic (Eds.), <i>Transcriptomics
    in Atherosclerosis</i> (pp. 131–172). Elsevier. <a href="https://doi.org/10.1016/b978-0-443-33064-3.00016-5">https://doi.org/10.1016/b978-0-443-33064-3.00016-5</a>'
  chicago: 'Stopa, Victoria, Miron Sopić, Guanliang Li, Judith Sluimer, José Basílio,
    Sander W. van der Laan, David P. Kreil, Yvan Devaux, and Bernhard Hochreiter.
    “Essentials of Transcriptomic Methods: Navigating through RNA Sequencing and Beyond.”
    In <i>Transcriptomics in Atherosclerosis</i>, edited by Yvan Devaux and Miron
    Sopic, 131–72. Elsevier, 2025. <a href="https://doi.org/10.1016/b978-0-443-33064-3.00016-5">https://doi.org/10.1016/b978-0-443-33064-3.00016-5</a>.'
  ieee: 'V. Stopa <i>et al.</i>, “Essentials of transcriptomic methods: Navigating
    through RNA sequencing and beyond,” in <i>Transcriptomics in Atherosclerosis</i>,
    Y. Devaux and M. Sopic, Eds. Elsevier, 2025, pp. 131–172.'
  ista: 'Stopa V, Sopić M, Li G, Sluimer J, Basílio J, van der Laan SW, Kreil DP,
    Devaux Y, Hochreiter B. 2025.Essentials of transcriptomic methods: Navigating
    through RNA sequencing and beyond. In: Transcriptomics in Atherosclerosis. , 131–172.'
  mla: 'Stopa, Victoria, et al. “Essentials of Transcriptomic Methods: Navigating
    through RNA Sequencing and Beyond.” <i>Transcriptomics in Atherosclerosis</i>,
    edited by Yvan Devaux and Miron Sopic, Elsevier, 2025, pp. 131–72, doi:<a href="https://doi.org/10.1016/b978-0-443-33064-3.00016-5">10.1016/b978-0-443-33064-3.00016-5</a>.'
  short: V. Stopa, M. Sopić, G. Li, J. Sluimer, J. Basílio, S.W. van der Laan, D.P.
    Kreil, Y. Devaux, B. Hochreiter, in:, Y. Devaux, M. Sopic (Eds.), Transcriptomics
    in Atherosclerosis, Elsevier, 2025, pp. 131–172.
date_created: 2025-12-29T12:16:22Z
date_published: 2025-10-24T00:00:00Z
date_updated: 2026-01-05T11:49:54Z
day: '24'
department:
- _id: Bio
doi: 10.1016/b978-0-443-33064-3.00016-5
editor:
- first_name: Yvan
  full_name: Devaux, Yvan
  last_name: Devaux
- first_name: Miron
  full_name: Sopic, Miron
  last_name: Sopic
language:
- iso: eng
month: '10'
oa_version: None
page: 131-172
publication: Transcriptomics in Atherosclerosis
publication_identifier:
  isbn:
  - '9780443330643'
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Essentials of transcriptomic methods: Navigating through RNA sequencing and
  beyond'
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_place: repository
OA_type: hybrid
_id: '20883'
abstract:
- lang: eng
  text: 'Evading imminent predator threat is critical for survival. Effective defensive
    strategies can vary, even between closely related species. However, the neural
    basis of such species-specific behaviours is still poorly understood. Here we
    find that two sister species of deer mice (genus Peromyscus) show different responses
    to the same looming stimulus: P. maniculatus, which occupies densely vegetated
    habitats, predominantly escapes, while the open field specialist, P. polionotus,
    briefly freezes. This difference arises from species-specific escape thresholds,
    is largely context-independent, and can be triggered by both visual and auditory
    threat stimuli. Using immunohistochemistry and electrophysiological recordings,
    we find that although visual threat activates the superior colliculus in both
    species, the role of the dorsal periaqueductal gray (dPAG) in driving behaviour
    differs. While dPAG activity scales with running speed in P. maniculatus, neural
    activity in the dPAG of P. polionotus correlates poorly with movement, including
    during visually triggered escape. Moreover, optogenetic activation of dPAG neurons
    elicits acceleration in P. maniculatus but not P. polionotus, while their chemogenetic
    inhibition during a looming stimulus delays escape onset in P. maniculatus to
    match that of P. polionotus. Together, we trace species-specific escape thresholds
    to a central circuit node, downstream of peripheral sensory neurons, localizing
    an ecologically relevant behavioural difference to a specific region of the mammalian
    brain.'
article_processing_charge: No
author:
- first_name: Baier
  full_name: Felix, Baier
  last_name: Felix
- first_name: Katja
  full_name: Reinhard, Katja
  last_name: Reinhard
- first_name: Bram
  full_name: Nuttin, Bram
  last_name: Nuttin
- first_name: Arnau
  full_name: Sans Dublanc, Arnau
  last_name: Sans Dublanc
- first_name: Chen
  full_name: Liu, Chen
  last_name: Liu
- first_name: Victoria
  full_name: Tong, Victoria
  last_name: Tong
- first_name: Julie Stefanie
  full_name: Murmann, Julie Stefanie
  id: 1d390868-f128-11eb-9611-a0ca5f7833b5
  last_name: Murmann
- first_name: Keimpe
  full_name: Wierda, Keimpe
  last_name: Wierda
- first_name: Karl
  full_name: Farrow, Karl
  last_name: Farrow
- first_name: Hopi
  full_name: Hoekstra, Hopi
  last_name: Hoekstra
citation:
  ama: Felix B, Reinhard K, Nuttin B, et al. The neural basis of species-specific
    defensive behaviour in Peromyscus mice. 2025. doi:<a href="https://doi.org/10.5061/DRYAD.Q2BVQ83XC">10.5061/DRYAD.Q2BVQ83XC</a>
  apa: Felix, B., Reinhard, K., Nuttin, B., Sans Dublanc, A., Liu, C., Tong, V., …
    Hoekstra, H. (2025). The neural basis of species-specific defensive behaviour
    in Peromyscus mice. Dryad. <a href="https://doi.org/10.5061/DRYAD.Q2BVQ83XC">https://doi.org/10.5061/DRYAD.Q2BVQ83XC</a>
  chicago: Felix, Baier, Katja Reinhard, Bram Nuttin, Arnau Sans Dublanc, Chen Liu,
    Victoria Tong, Julie Stefanie Murmann, Keimpe Wierda, Karl Farrow, and Hopi Hoekstra.
    “The Neural Basis of Species-Specific Defensive Behaviour in Peromyscus Mice.”
    Dryad, 2025. <a href="https://doi.org/10.5061/DRYAD.Q2BVQ83XC">https://doi.org/10.5061/DRYAD.Q2BVQ83XC</a>.
  ieee: B. Felix <i>et al.</i>, “The neural basis of species-specific defensive behaviour
    in Peromyscus mice.” Dryad, 2025.
  ista: Felix B, Reinhard K, Nuttin B, Sans Dublanc A, Liu C, Tong V, Murmann JS,
    Wierda K, Farrow K, Hoekstra H. 2025. The neural basis of species-specific defensive
    behaviour in Peromyscus mice, Dryad, <a href="https://doi.org/10.5061/DRYAD.Q2BVQ83XC">10.5061/DRYAD.Q2BVQ83XC</a>.
  mla: Felix, Baier, et al. <i>The Neural Basis of Species-Specific Defensive Behaviour
    in Peromyscus Mice</i>. Dryad, 2025, doi:<a href="https://doi.org/10.5061/DRYAD.Q2BVQ83XC">10.5061/DRYAD.Q2BVQ83XC</a>.
  short: B. Felix, K. Reinhard, B. Nuttin, A. Sans Dublanc, C. Liu, V. Tong, J.S.
    Murmann, K. Wierda, K. Farrow, H. Hoekstra, (2025).
date_created: 2025-12-30T07:36:29Z
date_published: 2025-06-23T00:00:00Z
date_updated: 2026-01-05T11:38:41Z
day: '23'
department:
- _id: GradSch
doi: 10.5061/DRYAD.Q2BVQ83XC
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5061/dryad.q2bvq83xc
month: '06'
oa: 1
oa_version: Submitted Version
publisher: Dryad
related_material:
  record:
  - id: '20101'
    relation: used_in_publication
    status: public
status: public
title: The neural basis of species-specific defensive behaviour in Peromyscus mice
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '20924'
abstract:
- lang: eng
  text: "Pioneer transcription factors (TFs) possess the ability to read out DNA motifs
    embedded within nucleosomes, driving changes in gene expression during cellular
    differentiation and reprogramming. Here, we present selected engagement on nucleosome
    sequencing (SeEN-seq), a protocol designed to systematically identify potential
    TF-binding sites on the nucleosome. We describe steps for nucleosome library assembly,
    SeEN-seq assay, and cryoelectron microscopy (cryo-EM) sample preparation. This
    protocol facilitates the preparation of homogeneous pioneer TF-nucleosome complexes
    for cryo-EM structure determination using single-particle analysis.\r\nFor complete
    details on the use and execution of this protocol, please refer to Michael et
    al.1"
acknowledgement: We thank R.H. Kim, A. Casper, and R. Gautsch for sequencing at the
  NGS facility (RRID:SCR_025746). K.T. is an Honorary Professor at the Department
  of Biology, Ludwig-Maximilians-University, Munich, Germany. This study was funded
  by European Research Council grant ERC-CoG-818556 TotipotentZygotChrom (K.T.), Max
  Planck Society (K.T.), and ERC Starting Grant “ChromaChrono” 101162145 (A.K.M.).
article_number: '104295'
article_processing_charge: Yes
article_type: original
author:
- first_name: Wataru
  full_name: Kobayashi, Wataru
  last_name: Kobayashi
- first_name: Alicia
  full_name: Michael, Alicia
  id: 6437c950-2a03-11ee-914d-d6476dd7b75c
  last_name: Michael
  orcid: 0000-0002-6080-839X
- first_name: Siwat
  full_name: Ruangroengkulrith, Siwat
  last_name: Ruangroengkulrith
- first_name: Maximilian
  full_name: Kümmecke, Maximilian
  last_name: Kümmecke
- first_name: Kikuë
  full_name: Tachibana, Kikuë
  last_name: Tachibana
citation:
  ama: Kobayashi W, Michael AK, Ruangroengkulrith S, Kümmecke M, Tachibana K. Protocol
    for integrative analysis of transcription factor-nucleosome interactions using
    SeEN-seq and cryo-EM structure determination. <i>STAR Protocols</i>. 2025;7. doi:<a
    href="https://doi.org/10.1016/j.xpro.2025.104295">10.1016/j.xpro.2025.104295</a>
  apa: Kobayashi, W., Michael, A. K., Ruangroengkulrith, S., Kümmecke, M., &#38; Tachibana,
    K. (2025). Protocol for integrative analysis of transcription factor-nucleosome
    interactions using SeEN-seq and cryo-EM structure determination. <i>STAR Protocols</i>.
    Elsevier. <a href="https://doi.org/10.1016/j.xpro.2025.104295">https://doi.org/10.1016/j.xpro.2025.104295</a>
  chicago: Kobayashi, Wataru, Alicia K. Michael, Siwat Ruangroengkulrith, Maximilian
    Kümmecke, and Kikuë Tachibana. “Protocol for Integrative Analysis of Transcription
    Factor-Nucleosome Interactions Using SeEN-Seq and Cryo-EM Structure Determination.”
    <i>STAR Protocols</i>. Elsevier, 2025. <a href="https://doi.org/10.1016/j.xpro.2025.104295">https://doi.org/10.1016/j.xpro.2025.104295</a>.
  ieee: W. Kobayashi, A. K. Michael, S. Ruangroengkulrith, M. Kümmecke, and K. Tachibana,
    “Protocol for integrative analysis of transcription factor-nucleosome interactions
    using SeEN-seq and cryo-EM structure determination,” <i>STAR Protocols</i>, vol.
    7. Elsevier, 2025.
  ista: Kobayashi W, Michael AK, Ruangroengkulrith S, Kümmecke M, Tachibana K. 2025.
    Protocol for integrative analysis of transcription factor-nucleosome interactions
    using SeEN-seq and cryo-EM structure determination. STAR Protocols. 7, 104295.
  mla: Kobayashi, Wataru, et al. “Protocol for Integrative Analysis of Transcription
    Factor-Nucleosome Interactions Using SeEN-Seq and Cryo-EM Structure Determination.”
    <i>STAR Protocols</i>, vol. 7, 104295, Elsevier, 2025, doi:<a href="https://doi.org/10.1016/j.xpro.2025.104295">10.1016/j.xpro.2025.104295</a>.
  short: W. Kobayashi, A.K. Michael, S. Ruangroengkulrith, M. Kümmecke, K. Tachibana,
    STAR Protocols 7 (2025).
corr_author: '1'
date_created: 2026-01-04T23:01:33Z
date_published: 2025-12-26T00:00:00Z
date_updated: 2026-01-05T11:16:11Z
day: '26'
department:
- _id: AlMi
doi: 10.1016/j.xpro.2025.104295
external_id:
  pmid:
  - '41455105'
has_accepted_license: '1'
intvolume: '         7'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.xpro.2025.104295
month: '12'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 9136c684-16d5-11f0-9cad-91c0177b365f
  grant_number: '101162145'
  name: Circadian structural transitions of chromatin
publication: STAR Protocols
publication_identifier:
  eissn:
  - 2666-1667
publication_status: epub_ahead
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Protocol for integrative analysis of transcription factor-nucleosome interactions
  using SeEN-seq and cryo-EM structure determination
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '20925'
abstract:
- lang: eng
  text: 'We prove normal typicality and dynamical typicality for a (centered) random
    block-band matrix model with block-dependent variances. A key feature of our model
    is that we achieve intermediate equilibration times, an aspect that has not been
    proven rigorously in any model before. Our proof builds on recently established
    concentration estimates for products of resolvents of Wigner type random matrices
    (Erdős and Riabov in Commun Math Phys 405(12): 282, 2024) and an intricate analysis
    of the deterministic approximation.'
acknowledgement: L.E. and J.H. are supported by the ERC Advanced Grant “RMTBeyond”
  No. 101020331. Moreover, J.H. acknowledges (partial) financial support by the ERC
  Consolidator Grant “ProbQuant” (jointly with the Swiss State Secretariat for Education,
  Research and Innovation). C.V. was (partially) supported by the German Academic
  Scholarship Foundation and the Deutsche Forschungsgemeinschaft (DFG, German Research
  Foundation) – TRR 352 – Project-ID 470903074. Moreover, C.V. acknowledges (partial)
  financial support by the ERC Starting Grant “FermiMath" No. 101040991 and the ERC
  Consolidator Grant “RAMBAS” No. 10104424, funded by the European Union. Open access
  funding provided by Institute of Science and Technology (IST Austria).
article_number: '5'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
  last_name: Erdös
  orcid: 0000-0001-5366-9603
- first_name: Sven Joscha
  full_name: Henheik, Sven Joscha
  id: 31d731d7-d235-11ea-ad11-b50331c8d7fb
  last_name: Henheik
  orcid: 0000-0003-1106-327X
- first_name: Cornelia
  full_name: Vogel, Cornelia
  id: 1cd0554a-ea28-11f0-9f40-ff76440883cd
  last_name: Vogel
citation:
  ama: Erdös L, Henheik SJ, Vogel C. Normal typicality and dynamical typicality for
    a random block-band matrix model. <i>Letters in Mathematical Physics</i>. 2025;116.
    doi:<a href="https://doi.org/10.1007/s11005-025-02037-5">10.1007/s11005-025-02037-5</a>
  apa: Erdös, L., Henheik, S. J., &#38; Vogel, C. (2025). Normal typicality and dynamical
    typicality for a random block-band matrix model. <i>Letters in Mathematical Physics</i>.
    Springer Nature. <a href="https://doi.org/10.1007/s11005-025-02037-5">https://doi.org/10.1007/s11005-025-02037-5</a>
  chicago: Erdös, László, Sven Joscha Henheik, and Cornelia Vogel. “Normal Typicality
    and Dynamical Typicality for a Random Block-Band Matrix Model.” <i>Letters in
    Mathematical Physics</i>. Springer Nature, 2025. <a href="https://doi.org/10.1007/s11005-025-02037-5">https://doi.org/10.1007/s11005-025-02037-5</a>.
  ieee: L. Erdös, S. J. Henheik, and C. Vogel, “Normal typicality and dynamical typicality
    for a random block-band matrix model,” <i>Letters in Mathematical Physics</i>,
    vol. 116. Springer Nature, 2025.
  ista: Erdös L, Henheik SJ, Vogel C. 2025. Normal typicality and dynamical typicality
    for a random block-band matrix model. Letters in Mathematical Physics. 116, 5.
  mla: Erdös, László, et al. “Normal Typicality and Dynamical Typicality for a Random
    Block-Band Matrix Model.” <i>Letters in Mathematical Physics</i>, vol. 116, 5,
    Springer Nature, 2025, doi:<a href="https://doi.org/10.1007/s11005-025-02037-5">10.1007/s11005-025-02037-5</a>.
  short: L. Erdös, S.J. Henheik, C. Vogel, Letters in Mathematical Physics 116 (2025).
corr_author: '1'
date_created: 2026-01-04T23:01:33Z
date_published: 2025-12-26T00:00:00Z
date_updated: 2026-01-05T11:22:25Z
day: '26'
ddc:
- '510'
department:
- _id: LaEr
doi: 10.1007/s11005-025-02037-5
ec_funded: 1
external_id:
  pmid:
  - '41459414'
has_accepted_license: '1'
intvolume: '       116'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1007/s11005-025-02037-5
month: '12'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 62796744-2b32-11ec-9570-940b20777f1d
  call_identifier: H2020
  grant_number: '101020331'
  name: Random matrices beyond Wigner-Dyson-Mehta
publication: Letters in Mathematical Physics
publication_identifier:
  eissn:
  - 1573-0530
  issn:
  - 0377-9017
publication_status: epub_ahead
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Normal typicality and dynamical typicality for a random block-band matrix model
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 116
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '20926'
abstract:
- lang: eng
  text: Most current machine learning interatomic potentials (MLIPs) rely on short-range
    approximations, without explicit treatment of long-range electrostatics. To address
    this, we recently developed the Latent Ewald Summation (LES) method, which infers
    electrostatic interactions, polarization, and Born effective charges (BECs), just
    by learning from energy and force training data. Here, we present LES as a standalone
    library, compatible with any short-range MLIP, and demonstrate its integration
    with methods such as MACE, NequIP, Allegro, CACE, CHGNet, and UMA. We benchmark
    LES-enhanced models on distinct systems, including bulk water, polar dipeptides,
    and gold dimer adsorption on defective substrates, and show that LES not only
    captures correct electrostatics but also improves accuracy. Additionally, we scale
    LES to large and chemically diverse data by training MACELES-OFF on the SPICE
    set containing molecules and clusters, making a universal MLIP with electrostatics
    for organic systems, including biomolecules. MACELES-OFF is more accurate than
    its short-range counterpart (MACE-OFF) trained on the same data set, predicts
    dipoles and BECs reliably, and has better descriptions of bulk liquids. By enabling
    efficient long-range electrostatics without directly training on electrical properties,
    LES paves the way for electrostatic foundation MLIPs.
acknowledgement: Research reported in this publication was supported by the National
  Institute Of General Medical Sciences of the National Institutes of Health under
  Award Number R35GM159986. The content is solely the responsibility of the authors
  and does not necessarily represent the official views of the National Institutes
  of Health. D.K. and B.C. acknowledge funding from Toyota Research Institute Synthesis
  Advanced Research Challenge. T.J.I., D.S.K. and P.Z. acknowledge funding from BIDMaP
  Postdoctoral Fellowship. T.J.I. used resources of the National Energy Research Scientific
  Computing Center (NERSC), a Department of Energy Office of Science User Facility
  using NERSC award DOEERCAP0031751 ′GenAI@NERSC’. The authors thank Bowen Deng for
  valuable discussions on MatGL implementation, and thank Gabor Csanyi for stimulating
  discussions.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Dongjin
  full_name: Kim, Dongjin
  last_name: Kim
- first_name: Xiaoyu
  full_name: Wang, Xiaoyu
  id: 8dff9c62-32b0-11ee-9fa8-fc73025e10f3
  last_name: Wang
- first_name: Santiago
  full_name: Vargas, Santiago
  last_name: Vargas
- first_name: Peichen
  full_name: Zhong, Peichen
  last_name: Zhong
- first_name: Daniel S.
  full_name: King, Daniel S.
  last_name: King
- first_name: Theo Jaffrelot
  full_name: Inizan, Theo Jaffrelot
  last_name: Inizan
- first_name: Bingqing
  full_name: Cheng, Bingqing
  id: cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9
  last_name: Cheng
  orcid: 0000-0002-3584-9632
citation:
  ama: Kim D, Wang X, Vargas S, et al. A universal augmentation framework for long-range
    electrostatics in machine learning interatomic potentials. <i>Journal of Chemical
    Theory and Computation</i>. 2025;21(24):12709-12724. doi:<a href="https://doi.org/10.1021/acs.jctc.5c01400">10.1021/acs.jctc.5c01400</a>
  apa: Kim, D., Wang, X., Vargas, S., Zhong, P., King, D. S., Inizan, T. J., &#38;
    Cheng, B. (2025). A universal augmentation framework for long-range electrostatics
    in machine learning interatomic potentials. <i>Journal of Chemical Theory and
    Computation</i>. American Chemical Society. <a href="https://doi.org/10.1021/acs.jctc.5c01400">https://doi.org/10.1021/acs.jctc.5c01400</a>
  chicago: Kim, Dongjin, Xiaoyu Wang, Santiago Vargas, Peichen Zhong, Daniel S. King,
    Theo Jaffrelot Inizan, and Bingqing Cheng. “A Universal Augmentation Framework
    for Long-Range Electrostatics in Machine Learning Interatomic Potentials.” <i>Journal
    of Chemical Theory and Computation</i>. American Chemical Society, 2025. <a href="https://doi.org/10.1021/acs.jctc.5c01400">https://doi.org/10.1021/acs.jctc.5c01400</a>.
  ieee: D. Kim <i>et al.</i>, “A universal augmentation framework for long-range electrostatics
    in machine learning interatomic potentials,” <i>Journal of Chemical Theory and
    Computation</i>, vol. 21, no. 24. American Chemical Society, pp. 12709–12724,
    2025.
  ista: Kim D, Wang X, Vargas S, Zhong P, King DS, Inizan TJ, Cheng B. 2025. A universal
    augmentation framework for long-range electrostatics in machine learning interatomic
    potentials. Journal of Chemical Theory and Computation. 21(24), 12709–12724.
  mla: Kim, Dongjin, et al. “A Universal Augmentation Framework for Long-Range Electrostatics
    in Machine Learning Interatomic Potentials.” <i>Journal of Chemical Theory and
    Computation</i>, vol. 21, no. 24, American Chemical Society, 2025, pp. 12709–24,
    doi:<a href="https://doi.org/10.1021/acs.jctc.5c01400">10.1021/acs.jctc.5c01400</a>.
  short: D. Kim, X. Wang, S. Vargas, P. Zhong, D.S. King, T.J. Inizan, B. Cheng, Journal
    of Chemical Theory and Computation 21 (2025) 12709–12724.
corr_author: '1'
date_created: 2026-01-04T23:01:33Z
date_published: 2025-12-10T00:00:00Z
date_updated: 2026-01-05T11:34:21Z
day: '10'
department:
- _id: GradSch
- _id: BiCh
doi: 10.1021/acs.jctc.5c01400
external_id:
  arxiv:
  - '2507.14302'
  pmid:
  - '41368735 '
intvolume: '        21'
issue: '24'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2507.14302
month: '12'
oa: 1
oa_version: Preprint
page: 12709-12724
pmid: 1
publication: Journal of Chemical Theory and Computation
publication_identifier:
  eissn:
  - 1549-9626
  issn:
  - 1549-9618
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: A universal augmentation framework for long-range electrostatics in machine
  learning interatomic potentials
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 21
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '20927'
abstract:
- lang: eng
  text: Cavity-magnon polaritons are hybrid excitations from the interaction between
    cavity photons and magnons, the quanta of collective spin oscillations. Along
    with the tunability of the magnon-photon coupling strength, fast information transfer
    and conversion speed are desired in hybrid devices. This can be achieved utilizing
    the propagating nature of spin waves with nonzero momentum for their ultrafast
    time dynamics and reduced ohmic dissipation. Antiferromagnets are particularly
    interesting as hosts for magnons since stray-field interactions are minimized
    and they support multiple modes with distinctive magnetic-field behavior across
    the phase diagram. Chromium trichloride (CrCl3) is a van der Waals layered antiferromagnet
    having a strong easy-plane anisotropy and a weak in-plane easy-axis anisotropy.
    Despite some magnetic resonance studies, the impact of magnetic reorientation
    of spins in CrCl3 on the cavity-magnon-polariton interaction strength as a function
    of magnetic field remains largely unexplored. In this study, we investigate the
    coupling between magnons in CrCl3 and photons in a coplanar waveguide resonator
    as a function of magnetic field. In particular, we find that the magnon-photon
    coupling strength varies nonmonotonically and distinctly with the magnetic field
    for the acoustic and the optical magnons, which can be utilized to tune the magnon-photon
    coupling strength using an external magnetic field as a knob. We find the signature
    of spin-flop transition in the two harmonics of the cavity due to a stronger dispersive
    coupling between optical magnons and cavity photons at lower fields. Additionally,
    we find standing modes formed by spin waves with nonzero momentum associated with
    the two hybrid magnons when the external field is applied at an angle with the
    crystal plane. These modes do not undergo substantial coupling with the cavity
    mode unlike the antiferromagnetic modes and can be used as low-loss propagation
    channels in hybrid devices.
acknowledgement: We thank R. Vijayaraghavan, V. Singh, A. Kamra, A. Barman, M. Patankar,
  S. Kundu, S. Hazra, S. Sahu, A. Riswadkar, A. Bhattacharjee, and S. Das for helpful
  discussions and experimental assistance. We acknowledge the Swarnajayanti Fellowship
  of the Department of Science and Technology (for M.M.D.), DST Nanomission Grant
  No. SR/NM/NS-45/2016, SERB SUPRA Grant No. SPR/2019/001247, ONRG Grant No. N62909–18-1–2058,
  and the Department of Atomic Energy of the Government of India Grant No. 12-R&D-TFR5.10–0100
  for support.
article_number: '214443'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Supriya
  full_name: Mandal, Supriya
  last_name: Mandal
- first_name: Krishnendu
  full_name: Maji, Krishnendu
  id: 76bc9e9f-ba0b-11ee-8184-90edabd17a58
  last_name: Maji
- first_name: Lucky
  full_name: Kapoor, Lucky
  id: 84b9700b-15b2-11ec-abd3-831089e67615
  last_name: Kapoor
  orcid: 0000-0001-8319-2148
- first_name: Souvik
  full_name: Sasmal, Souvik
  last_name: Sasmal
- first_name: Soham
  full_name: Manni, Soham
  last_name: Manni
- first_name: John
  full_name: Jesudasan, John
  last_name: Jesudasan
- first_name: Pratap
  full_name: Raychaudhuri, Pratap
  last_name: Raychaudhuri
- first_name: Arumugam
  full_name: Thamizhavel, Arumugam
  last_name: Thamizhavel
- first_name: Mandar M.
  full_name: Deshmukh, Mandar M.
  last_name: Deshmukh
citation:
  ama: Mandal S, Maji K, Kapoor L, et al. Cavity based sensing of antiferromagnetic
    canting and nonzero-momentum spin waves in a van der Waals cavity-magnon-polariton
    system. <i>Physical Review B</i>. 2025;112(21). doi:<a href="https://doi.org/10.1103/bdd1-b8ys">10.1103/bdd1-b8ys</a>
  apa: Mandal, S., Maji, K., Kapoor, L., Sasmal, S., Manni, S., Jesudasan, J., … Deshmukh,
    M. M. (2025). Cavity based sensing of antiferromagnetic canting and nonzero-momentum
    spin waves in a van der Waals cavity-magnon-polariton system. <i>Physical Review
    B</i>. American Physical Society. <a href="https://doi.org/10.1103/bdd1-b8ys">https://doi.org/10.1103/bdd1-b8ys</a>
  chicago: Mandal, Supriya, Krishnendu Maji, Lucky Kapoor, Souvik Sasmal, Soham Manni,
    John Jesudasan, Pratap Raychaudhuri, Arumugam Thamizhavel, and Mandar M. Deshmukh.
    “Cavity Based Sensing of Antiferromagnetic Canting and Nonzero-Momentum Spin Waves
    in a van Der Waals Cavity-Magnon-Polariton System.” <i>Physical Review B</i>.
    American Physical Society, 2025. <a href="https://doi.org/10.1103/bdd1-b8ys">https://doi.org/10.1103/bdd1-b8ys</a>.
  ieee: S. Mandal <i>et al.</i>, “Cavity based sensing of antiferromagnetic canting
    and nonzero-momentum spin waves in a van der Waals cavity-magnon-polariton system,”
    <i>Physical Review B</i>, vol. 112, no. 21. American Physical Society, 2025.
  ista: Mandal S, Maji K, Kapoor L, Sasmal S, Manni S, Jesudasan J, Raychaudhuri P,
    Thamizhavel A, Deshmukh MM. 2025. Cavity based sensing of antiferromagnetic canting
    and nonzero-momentum spin waves in a van der Waals cavity-magnon-polariton system.
    Physical Review B. 112(21), 214443.
  mla: Mandal, Supriya, et al. “Cavity Based Sensing of Antiferromagnetic Canting
    and Nonzero-Momentum Spin Waves in a van Der Waals Cavity-Magnon-Polariton System.”
    <i>Physical Review B</i>, vol. 112, no. 21, 214443, American Physical Society,
    2025, doi:<a href="https://doi.org/10.1103/bdd1-b8ys">10.1103/bdd1-b8ys</a>.
  short: S. Mandal, K. Maji, L. Kapoor, S. Sasmal, S. Manni, J. Jesudasan, P. Raychaudhuri,
    A. Thamizhavel, M.M. Deshmukh, Physical Review B 112 (2025).
date_created: 2026-01-04T23:01:34Z
date_published: 2025-12-19T00:00:00Z
date_updated: 2026-01-05T10:07:04Z
day: '19'
department:
- _id: MaIb
- _id: JoFi
doi: 10.1103/bdd1-b8ys
external_id:
  arxiv:
  - '2512.05236'
intvolume: '       112'
issue: '21'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2512.05236
month: '12'
oa: 1
oa_version: Preprint
publication: Physical Review B
publication_identifier:
  eissn:
  - 2469-9969
  issn:
  - 2469-9950
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
related_material:
  record:
  - id: '20940'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: Cavity based sensing of antiferromagnetic canting and nonzero-momentum spin
  waves in a van der Waals cavity-magnon-polariton system
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 112
year: '2025'
...
---
OA_type: closed access
_id: '20928'
abstract:
- lang: eng
  text: The current work focuses on the performance of hydrodynamics and mass transfer
    in a microchannel. A hydrodynamic model is developed for a gas–liquid (CO2–water)
    system and slug flow pattern. For the first time in literature, a concept of pulsating
    velocity input is introduced in an enhanced cross-T-junction microchannel to study
    the mass transfer using the physical absorption mechanism in ANSYS FLUENT R2 2024.
    The mass transfer model is associated with the hydrodynamic model and some user-defined
    functions in FLUENT. This work demonstrates that incorporating obstructions and
    applying trapezoidal and sinusoidal wave inputs improve the CO2 absorption rate.
    The obtained data are further compared with the plain T-junction microchannel
    in terms of mass transfer coefficient. Solubility of CO2 in three different solvents
    (ethyl alcohol, water, and ethylene glycol) has been revealed in an enhanced cross
    T-junction microchannel at two different temperatures, i.e., 298.15 and 303.15 K.
    The numerical simulations illustrate that an increase in temperature has an adverse
    effect on the mass transfer rate.
acknowledgement: The authors are thankful for the financial support provided by the
  Ministry of Education, India, and MNNIT Allahabad, as well as for the necessary
  equipment, computing facilities, and overall support to carry out this study.
article_number: '122012'
article_processing_charge: No
article_type: original
author:
- first_name: Bushra
  full_name: Khatoon, Bushra
  last_name: Khatoon
- first_name: Vikas K.
  full_name: Chaudhary, Vikas K.
  last_name: Chaudhary
- first_name: Shoaib
  full_name: Kamil, Shoaib
  id: 185a19af-dc7d-11ea-9b2f-8eb2201959e9
  last_name: Kamil
- first_name: Shabih Ul
  full_name: Hasan, Shabih Ul
  last_name: Hasan
- first_name: M. Siraj
  full_name: Alam, M. Siraj
  last_name: Alam
citation:
  ama: 'Khatoon B, Chaudhary VK, Kamil S, Hasan SU, Alam MS. Enhanced mass transfer
    in microgeometry using pulsating velocity inputs: Hydrodynamic analysis and numerical
    simulation. <i>Physics of Fluids</i>. 2025;37(12). doi:<a href="https://doi.org/10.1063/5.0303132">10.1063/5.0303132</a>'
  apa: 'Khatoon, B., Chaudhary, V. K., Kamil, S., Hasan, S. U., &#38; Alam, M. S.
    (2025). Enhanced mass transfer in microgeometry using pulsating velocity inputs:
    Hydrodynamic analysis and numerical simulation. <i>Physics of Fluids</i>. AIP
    Publishing. <a href="https://doi.org/10.1063/5.0303132">https://doi.org/10.1063/5.0303132</a>'
  chicago: 'Khatoon, Bushra, Vikas K. Chaudhary, Shoaib Kamil, Shabih Ul Hasan, and
    M. Siraj Alam. “Enhanced Mass Transfer in Microgeometry Using Pulsating Velocity
    Inputs: Hydrodynamic Analysis and Numerical Simulation.” <i>Physics of Fluids</i>.
    AIP Publishing, 2025. <a href="https://doi.org/10.1063/5.0303132">https://doi.org/10.1063/5.0303132</a>.'
  ieee: 'B. Khatoon, V. K. Chaudhary, S. Kamil, S. U. Hasan, and M. S. Alam, “Enhanced
    mass transfer in microgeometry using pulsating velocity inputs: Hydrodynamic analysis
    and numerical simulation,” <i>Physics of Fluids</i>, vol. 37, no. 12. AIP Publishing,
    2025.'
  ista: 'Khatoon B, Chaudhary VK, Kamil S, Hasan SU, Alam MS. 2025. Enhanced mass
    transfer in microgeometry using pulsating velocity inputs: Hydrodynamic analysis
    and numerical simulation. Physics of Fluids. 37(12), 122012.'
  mla: 'Khatoon, Bushra, et al. “Enhanced Mass Transfer in Microgeometry Using Pulsating
    Velocity Inputs: Hydrodynamic Analysis and Numerical Simulation.” <i>Physics of
    Fluids</i>, vol. 37, no. 12, 122012, AIP Publishing, 2025, doi:<a href="https://doi.org/10.1063/5.0303132">10.1063/5.0303132</a>.'
  short: B. Khatoon, V.K. Chaudhary, S. Kamil, S.U. Hasan, M.S. Alam, Physics of Fluids
    37 (2025).
date_created: 2026-01-04T23:01:34Z
date_published: 2025-12-01T00:00:00Z
date_updated: 2026-01-05T10:54:15Z
day: '01'
department:
- _id: BjHo
doi: 10.1063/5.0303132
intvolume: '        37'
issue: '12'
language:
- iso: eng
month: '12'
oa_version: None
publication: Physics of Fluids
publication_identifier:
  eissn:
  - 1089-7666
  issn:
  - 1070-6631
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Enhanced mass transfer in microgeometry using pulsating velocity inputs: Hydrodynamic
  analysis and numerical simulation'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 37
year: '2025'
...
