---
_id: '1201'
abstract:
- lang: eng
text: In this issue of Cell, Skau et al. show that the formin FMN2 organizes a perinuclear
actin cytoskeleton that protects the nucleus and its genomic content of migrating
cells squeezing through small spaces.
article_processing_charge: No
author:
- first_name: Jörg
full_name: Renkawitz, Jörg
id: 3F0587C8-F248-11E8-B48F-1D18A9856A87
last_name: Renkawitz
orcid: 0000-0003-2856-3369
- first_name: Michael K
full_name: Sixt, Michael K
id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
last_name: Sixt
orcid: 0000-0002-6620-9179
citation:
ama: Renkawitz J, Sixt MK. Formin’ a nuclear protection. Cell. 2016;167(6):1448-1449.
doi:10.1016/j.cell.2016.11.024
apa: Renkawitz, J., & Sixt, M. K. (2016). Formin’ a nuclear protection. Cell.
Cell Press. https://doi.org/10.1016/j.cell.2016.11.024
chicago: Renkawitz, Jörg, and Michael K Sixt. “Formin’ a Nuclear Protection.” Cell.
Cell Press, 2016. https://doi.org/10.1016/j.cell.2016.11.024.
ieee: J. Renkawitz and M. K. Sixt, “Formin’ a nuclear protection,” Cell,
vol. 167, no. 6. Cell Press, pp. 1448–1449, 2016.
ista: Renkawitz J, Sixt MK. 2016. Formin’ a nuclear protection. Cell. 167(6), 1448–1449.
mla: Renkawitz, Jörg, and Michael K. Sixt. “Formin’ a Nuclear Protection.” Cell,
vol. 167, no. 6, Cell Press, 2016, pp. 1448–49, doi:10.1016/j.cell.2016.11.024.
short: J. Renkawitz, M.K. Sixt, Cell 167 (2016) 1448–1449.
date_created: 2018-12-11T11:50:41Z
date_published: 2016-12-01T00:00:00Z
date_updated: 2025-09-22T09:41:33Z
day: '01'
department:
- _id: MiSi
doi: 10.1016/j.cell.2016.11.024
external_id:
isi:
- '000389470500007'
intvolume: ' 167'
isi: 1
issue: '6'
language:
- iso: eng
month: '12'
oa_version: None
page: 1448 - 1449
publication: Cell
publication_status: published
publisher: Cell Press
publist_id: '6149'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Formin’ a nuclear protection
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 167
year: '2016'
...
---
_id: '1202'
acknowledgement: The authors thank Sophie A.O. Armitage and Jan N. Offenborn for helpful
comments on the figures, and two anonymous reviewers for their helpful comments.
The project was funded by the Deutsche Forschungsgemeinschaft (DFG, KU 1929/4-2)
within the priority programme SPP 1399 “Host–Parasite Coevolution”.
article_processing_charge: No
author:
- first_name: Barbara
full_name: Milutinovic, Barbara
id: 2CDC32B8-F248-11E8-B48F-1D18A9856A87
last_name: Milutinovic
orcid: 0000-0002-8214-4758
- first_name: Robert
full_name: Peuß, Robert
last_name: Peuß
- first_name: Kevin
full_name: Ferro, Kevin
last_name: Ferro
- first_name: Joachim
full_name: Kurtz, Joachim
last_name: Kurtz
citation:
ama: 'Milutinovic B, Peuß R, Ferro K, Kurtz J. Immune priming in arthropods: an
update focusing on the red flour beetle. Zoology . 2016;119(4):254-261.
doi:10.1016/j.zool.2016.03.006'
apa: 'Milutinovic, B., Peuß, R., Ferro, K., & Kurtz, J. (2016). Immune priming
in arthropods: an update focusing on the red flour beetle. Zoology . Elsevier.
https://doi.org/10.1016/j.zool.2016.03.006'
chicago: 'Milutinovic, Barbara, Robert Peuß, Kevin Ferro, and Joachim Kurtz. “Immune
Priming in Arthropods: An Update Focusing on the Red Flour Beetle.” Zoology
. Elsevier, 2016. https://doi.org/10.1016/j.zool.2016.03.006.'
ieee: 'B. Milutinovic, R. Peuß, K. Ferro, and J. Kurtz, “Immune priming in arthropods:
an update focusing on the red flour beetle,” Zoology , vol. 119, no. 4.
Elsevier, pp. 254–261, 2016.'
ista: 'Milutinovic B, Peuß R, Ferro K, Kurtz J. 2016. Immune priming in arthropods:
an update focusing on the red flour beetle. Zoology . 119(4), 254–261.'
mla: 'Milutinovic, Barbara, et al. “Immune Priming in Arthropods: An Update Focusing
on the Red Flour Beetle.” Zoology , vol. 119, no. 4, Elsevier, 2016, pp.
254–61, doi:10.1016/j.zool.2016.03.006.'
short: B. Milutinovic, R. Peuß, K. Ferro, J. Kurtz, Zoology 119 (2016) 254–261.
date_created: 2018-12-11T11:50:41Z
date_published: 2016-08-01T00:00:00Z
date_updated: 2025-09-22T09:41:02Z
day: '01'
ddc:
- '570'
department:
- _id: SyCr
doi: 10.1016/j.zool.2016.03.006
external_id:
isi:
- '000384958500003'
file:
- access_level: open_access
checksum: 8396d5bd95f9c4295857162f902afabf
content_type: application/pdf
creator: kschuh
date_created: 2019-01-25T13:00:20Z
date_updated: 2020-07-14T12:44:39Z
file_id: '5885'
file_name: 2016_Elsevier_Milutinovic.pdf
file_size: 1473211
relation: main_file
file_date_updated: 2020-07-14T12:44:39Z
has_accepted_license: '1'
intvolume: ' 119'
isi: 1
issue: '4'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '08'
oa: 1
oa_version: Published Version
page: 254 - 261
project:
- _id: 25DAF0B2-B435-11E9-9278-68D0E5697425
grant_number: CR-118/3-1
name: Host-Parasite Coevolution
publication: 'Zoology '
publication_status: published
publisher: Elsevier
publist_id: '6147'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Immune priming in arthropods: an update focusing on the red flour beetle'
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 119
year: '2016'
...
---
_id: '1203'
abstract:
- lang: eng
text: Haemophilus haemolyticus has been recently discovered to have the potential
to cause invasive disease. It is closely related to nontypeable Haemophilus influenzae
(NT H. influenzae). NT H. influenzae and H. haemolyticus are often misidentified
because none of the existing tests targeting the known phenotypes of H. haemolyticus
are able to specifically identify H. haemolyticus. Through comparative genomic
analysis of H. haemolyticus and NT H. influenzae, we identified genes unique to
H. haemolyticus that can be used as targets for the identification of H. haemolyticus.
A real-time PCR targeting purT (encoding phosphoribosylglycinamide formyltransferase
2 in the purine synthesis pathway) was developed and evaluated. The lower limit
of detection was 40 genomes/PCR; the sensitivity and specificity in detecting
H. haemolyticus were 98.9% and 97%, respectively. To improve the discrimination
of H. haemolyticus and NT H. influenzae, a testing scheme combining two targets
(H. haemolyticus purT and H. influenzae hpd, encoding protein D lipoprotein) was
also evaluated and showed 96.7% sensitivity and 98.2% specificity for the identification
of H. haemolyticus and 92.8% sensitivity and 100% specificity for the identification
of H. influenzae, respectively. The dual-target testing scheme can be used for
the diagnosis and surveillance of infection and disease caused by H. haemolyticus
and NT H. influenzae.
acknowledgement: We are grateful to ABCs for providing strains and the Bacterial Meningitis
Laboratory for technical support.
article_processing_charge: No
author:
- first_name: Fang
full_name: Hu, Fang
last_name: Hu
- first_name: Lavanya
full_name: Rishishwar, Lavanya
last_name: Rishishwar
- first_name: Ambily
full_name: Sivadas, Ambily
last_name: Sivadas
- first_name: Gabriel
full_name: Mitchell, Gabriel
id: 315BCD80-F248-11E8-B48F-1D18A9856A87
last_name: Mitchell
- first_name: Jordan
full_name: King, Jordan
last_name: King
- first_name: Timothy
full_name: Murphy, Timothy
last_name: Murphy
- first_name: Janet
full_name: Gilsdorf, Janet
last_name: Gilsdorf
- first_name: Leonard
full_name: Mayer, Leonard
last_name: Mayer
- first_name: Xin
full_name: Wang, Xin
last_name: Wang
citation:
ama: Hu F, Rishishwar L, Sivadas A, et al. Comparative genomic analysis of Haemophilus
haemolyticus and nontypeable Haemophilus influenzae and a new testing scheme for
their discrimination. Journal of Clinical Microbiology. 2016;54(12):3010-3017.
doi:10.1128/JCM.01511-16
apa: Hu, F., Rishishwar, L., Sivadas, A., Mitchell, G., King, J., Murphy, T., …
Wang, X. (2016). Comparative genomic analysis of Haemophilus haemolyticus and
nontypeable Haemophilus influenzae and a new testing scheme for their discrimination.
Journal of Clinical Microbiology. American Society for Microbiology. https://doi.org/10.1128/JCM.01511-16
chicago: Hu, Fang, Lavanya Rishishwar, Ambily Sivadas, Gabriel Mitchell, Jordan
King, Timothy Murphy, Janet Gilsdorf, Leonard Mayer, and Xin Wang. “Comparative
Genomic Analysis of Haemophilus Haemolyticus and Nontypeable Haemophilus Influenzae
and a New Testing Scheme for Their Discrimination.” Journal of Clinical Microbiology.
American Society for Microbiology, 2016. https://doi.org/10.1128/JCM.01511-16.
ieee: F. Hu et al., “Comparative genomic analysis of Haemophilus haemolyticus
and nontypeable Haemophilus influenzae and a new testing scheme for their discrimination,”
Journal of Clinical Microbiology, vol. 54, no. 12. American Society for
Microbiology, pp. 3010–3017, 2016.
ista: Hu F, Rishishwar L, Sivadas A, Mitchell G, King J, Murphy T, Gilsdorf J, Mayer
L, Wang X. 2016. Comparative genomic analysis of Haemophilus haemolyticus and
nontypeable Haemophilus influenzae and a new testing scheme for their discrimination.
Journal of Clinical Microbiology. 54(12), 3010–3017.
mla: Hu, Fang, et al. “Comparative Genomic Analysis of Haemophilus Haemolyticus
and Nontypeable Haemophilus Influenzae and a New Testing Scheme for Their Discrimination.”
Journal of Clinical Microbiology, vol. 54, no. 12, American Society for
Microbiology, 2016, pp. 3010–17, doi:10.1128/JCM.01511-16.
short: F. Hu, L. Rishishwar, A. Sivadas, G. Mitchell, J. King, T. Murphy, J. Gilsdorf,
L. Mayer, X. Wang, Journal of Clinical Microbiology 54 (2016) 3010–3017.
date_created: 2018-12-11T11:50:41Z
date_published: 2016-12-01T00:00:00Z
date_updated: 2025-09-22T09:40:28Z
day: '01'
department:
- _id: GaTk
doi: 10.1128/JCM.01511-16
external_id:
isi:
- '000389209600026'
intvolume: ' 54'
isi: 1
issue: '12'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5121393/
month: '12'
oa: 1
oa_version: Submitted Version
page: 3010 - 3017
publication: Journal of Clinical Microbiology
publication_status: published
publisher: American Society for Microbiology
publist_id: '6146'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Comparative genomic analysis of Haemophilus haemolyticus and nontypeable Haemophilus
influenzae and a new testing scheme for their discrimination
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 54
year: '2016'
...
---
_id: '1204'
abstract:
- lang: eng
text: In science, as in life, "surprises" can be adequately appreciated
only in the presence of a null model, what we expect a priori. In physics, theories
sometimes express the values of dimensionless physical constants as combinations
of mathematical constants like π or e. The inverse problem also arises, whereby
the measured value of a physical constant admits a "surprisingly" simple
approximation in terms of well-known mathematical constants. Can we estimate the
probability for this to be a mere coincidence, rather than an inkling of some
theory? We answer the question in the most naive form.
article_processing_charge: No
arxiv: 1
author:
- first_name: Ariel
full_name: Amir, Ariel
last_name: Amir
- first_name: Mikhail
full_name: Lemeshko, Mikhail
id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
last_name: Lemeshko
orcid: 0000-0002-6990-7802
- first_name: Tadashi
full_name: Tokieda, Tadashi
last_name: Tokieda
citation:
ama: Amir A, Lemeshko M, Tokieda T. Surprises in numerical expressions of physical
constants. American Mathematical Monthly. 2016;123(6):609-612. doi:10.4169/amer.math.monthly.123.6.609
apa: Amir, A., Lemeshko, M., & Tokieda, T. (2016). Surprises in numerical expressions
of physical constants. American Mathematical Monthly. Mathematical Association
of America. https://doi.org/10.4169/amer.math.monthly.123.6.609
chicago: Amir, Ariel, Mikhail Lemeshko, and Tadashi Tokieda. “Surprises in Numerical
Expressions of Physical Constants.” American Mathematical Monthly. Mathematical
Association of America, 2016. https://doi.org/10.4169/amer.math.monthly.123.6.609.
ieee: A. Amir, M. Lemeshko, and T. Tokieda, “Surprises in numerical expressions
of physical constants,” American Mathematical Monthly, vol. 123, no. 6.
Mathematical Association of America, pp. 609–612, 2016.
ista: Amir A, Lemeshko M, Tokieda T. 2016. Surprises in numerical expressions of
physical constants. American Mathematical Monthly. 123(6), 609–612.
mla: Amir, Ariel, et al. “Surprises in Numerical Expressions of Physical Constants.”
American Mathematical Monthly, vol. 123, no. 6, Mathematical Association
of America, 2016, pp. 609–12, doi:10.4169/amer.math.monthly.123.6.609.
short: A. Amir, M. Lemeshko, T. Tokieda, American Mathematical Monthly 123 (2016)
609–612.
date_created: 2018-12-11T11:50:42Z
date_published: 2016-06-01T00:00:00Z
date_updated: 2025-09-22T09:39:09Z
day: '01'
department:
- _id: MiLe
doi: 10.4169/amer.math.monthly.123.6.609
external_id:
arxiv:
- '1603.00299'
isi:
- '000381754900010'
intvolume: ' 123'
isi: 1
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1603.00299
month: '06'
oa: 1
oa_version: Preprint
page: 609 - 612
publication: American Mathematical Monthly
publication_status: published
publisher: Mathematical Association of America
publist_id: '6143'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Surprises in numerical expressions of physical constants
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 123
year: '2016'
...
---
_id: '1205'
abstract:
- lang: eng
text: In this paper, we present a formal model-driven engineering approach to establishing
a safety-assured implementation of Multifunction vehicle bus controller (MVBC)
based on the generic reference models and requirements described in the International
Electrotechnical Commission (IEC) standard IEC-61375. First, the generic models
described in IEC-61375 are translated into a network of timed automata, and some
safety requirements tested in IEC-61375 are formalized as timed computation tree
logic (TCTL) formulas. With the help of Uppaal, we check and debug whether the
timed automata satisfy the formulas or not. Within this step, several logic inconsistencies
in the original standard are detected and corrected. Then, we apply the tool Times
to generate C code from the verified model, which was later synthesized into a
real MVBC chip. Finally, the runtime verification tool RMOR is applied to verify
some safety requirements at the implementation level. We set up a real platform
with worldwide mostly used MVBC D113, and verify the correctness and the scalability
of the synthesized MVBC chip more comprehensively. The errors in the standard
has been confirmed and the resulted MVBC has been deployed in real train communication
network.
acknowledgement: "This research is sponsored in part by NSFC Program (No. 91218302,
No. 61527812), National Science and Technology Major Project (No. 2016ZX01038101),
Tsinghua University Initiative Scientific Research Program (20131089331), MIIT IT
funds (Research and application of TCN key technologies) of China, and the National
Key Technology R&D Program (No. 2015BAG14B01-02), Austrian Science Fund (FWF) under
grants S11402-N23 (RiSE/SHiNE) and Z211-N23.\r\n"
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Yu
full_name: Jiang, Yu
last_name: Jiang
- first_name: Han
full_name: Liu, Han
last_name: Liu
- first_name: Houbing
full_name: Song, Houbing
last_name: Song
- first_name: Hui
full_name: Kong, Hui
id: 3BDE25AA-F248-11E8-B48F-1D18A9856A87
last_name: Kong
orcid: 0000-0002-3066-6941
- first_name: Ming
full_name: Gu, Ming
last_name: Gu
- first_name: Jiaguang
full_name: Sun, Jiaguang
last_name: Sun
- first_name: Lui
full_name: Sha, Lui
last_name: Sha
citation:
ama: 'Jiang Y, Liu H, Song H, et al. Safety assured formal model driven design of
the multifunction vehicle bus controller. In: Vol 9995. Springer; 2016:757-763.
doi:10.1007/978-3-319-48989-6_47'
apa: 'Jiang, Y., Liu, H., Song, H., Kong, H., Gu, M., Sun, J., & Sha, L. (2016).
Safety assured formal model driven design of the multifunction vehicle bus controller
(Vol. 9995, pp. 757–763). Presented at the FM: Formal Methods, Limassol, Cyprus:
Springer. https://doi.org/10.1007/978-3-319-48989-6_47'
chicago: Jiang, Yu, Han Liu, Houbing Song, Hui Kong, Ming Gu, Jiaguang Sun, and
Lui Sha. “Safety Assured Formal Model Driven Design of the Multifunction Vehicle
Bus Controller,” 9995:757–63. Springer, 2016. https://doi.org/10.1007/978-3-319-48989-6_47.
ieee: 'Y. Jiang et al., “Safety assured formal model driven design of the
multifunction vehicle bus controller,” presented at the FM: Formal Methods, Limassol,
Cyprus, 2016, vol. 9995, pp. 757–763.'
ista: 'Jiang Y, Liu H, Song H, Kong H, Gu M, Sun J, Sha L. 2016. Safety assured
formal model driven design of the multifunction vehicle bus controller. FM: Formal
Methods, LNCS, vol. 9995, 757–763.'
mla: Jiang, Yu, et al. Safety Assured Formal Model Driven Design of the Multifunction
Vehicle Bus Controller. Vol. 9995, Springer, 2016, pp. 757–63, doi:10.1007/978-3-319-48989-6_47.
short: Y. Jiang, H. Liu, H. Song, H. Kong, M. Gu, J. Sun, L. Sha, in:, Springer,
2016, pp. 757–763.
conference:
end_date: 2016-11-11
location: Limassol, Cyprus
name: 'FM: Formal Methods'
start_date: 2016-11-09
date_created: 2018-12-11T11:50:42Z
date_published: 2016-11-08T00:00:00Z
date_updated: 2025-09-22T09:39:55Z
day: '08'
ddc:
- '004'
department:
- _id: ToHe
doi: 10.1007/978-3-319-48989-6_47
external_id:
isi:
- '000389793300047'
file:
- access_level: open_access
checksum: fea0b3fae9a2a42e8bfec59840e30d8c
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:08:13Z
date_updated: 2020-07-14T12:44:39Z
file_id: '4673'
file_name: IST-2017-783-v1+1_FM-Safety-Assured-Development-of-MVBC.pdf
file_size: 281501
relation: main_file
file_date_updated: 2020-07-14T12:44:39Z
has_accepted_license: '1'
intvolume: ' 9995'
isi: 1
language:
- iso: eng
month: '11'
oa: 1
oa_version: Submitted Version
page: 757 - 763
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S 11407_N23
name: Rigorous Systems Engineering
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: Z211
name: Formal methods for the design and analysis of complex systems
publication_status: published
publisher: Springer
publist_id: '6144'
pubrep_id: '783'
quality_controlled: '1'
related_material:
record:
- id: '434'
relation: later_version
status: public
scopus_import: '1'
status: public
title: Safety assured formal model driven design of the multifunction vehicle bus
controller
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 9995
year: '2016'
...
---
_id: '1206'
abstract:
- lang: eng
text: We study a polar molecule immersed in a superfluid environment, such as a
helium nanodroplet or a Bose–Einstein condensate, in the presence of a strong
electrostatic field. We show that coupling of the molecular pendular motion, induced
by the field, to the fluctuating bath leads to formation of pendulons—spherical
harmonic librators dressed by a field of many-particle excitations. We study the
behavior of the pendulon in a broad range of molecule–bath and molecule–field
interaction strengths, and reveal that its spectrum features a series of instabilities
which are absent in the field-free case of the angulon quasiparticle. Furthermore,
we show that an external field allows to fine-tune the positions of these instabilities
in the molecular rotational spectrum. This opens the door to detailed experimental
studies of redistribution of orbital angular momentum in many-particle systems.
© 2016 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
article_processing_charge: No
arxiv: 1
author:
- first_name: Elena
full_name: Redchenko, Elena
id: 2C21D6E8-F248-11E8-B48F-1D18A9856A87
last_name: Redchenko
- first_name: Mikhail
full_name: Lemeshko, Mikhail
id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
last_name: Lemeshko
orcid: 0000-0002-6990-7802
citation:
ama: Redchenko E, Lemeshko M. Libration of strongly oriented polar molecules inside
a superfluid. ChemPhysChem. 2016;17(22):3649-3654. doi:10.1002/cphc.201601042
apa: Redchenko, E., & Lemeshko, M. (2016). Libration of strongly oriented polar
molecules inside a superfluid. ChemPhysChem. Wiley-Blackwell. https://doi.org/10.1002/cphc.201601042
chicago: Redchenko, Elena, and Mikhail Lemeshko. “Libration of Strongly Oriented
Polar Molecules inside a Superfluid.” ChemPhysChem. Wiley-Blackwell, 2016.
https://doi.org/10.1002/cphc.201601042.
ieee: E. Redchenko and M. Lemeshko, “Libration of strongly oriented polar molecules
inside a superfluid,” ChemPhysChem, vol. 17, no. 22. Wiley-Blackwell, pp.
3649–3654, 2016.
ista: Redchenko E, Lemeshko M. 2016. Libration of strongly oriented polar molecules
inside a superfluid. ChemPhysChem. 17(22), 3649–3654.
mla: Redchenko, Elena, and Mikhail Lemeshko. “Libration of Strongly Oriented Polar
Molecules inside a Superfluid.” ChemPhysChem, vol. 17, no. 22, Wiley-Blackwell,
2016, pp. 3649–54, doi:10.1002/cphc.201601042.
short: E. Redchenko, M. Lemeshko, ChemPhysChem 17 (2016) 3649–3654.
date_created: 2018-12-11T11:50:43Z
date_published: 2016-09-18T00:00:00Z
date_updated: 2025-09-22T09:38:39Z
day: '18'
department:
- _id: JoFi
- _id: MiLe
doi: 10.1002/cphc.201601042
ec_funded: 1
external_id:
arxiv:
- '1609.08161'
isi:
- '000388625000008'
intvolume: ' 17'
isi: 1
issue: '22'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1609.08161
month: '09'
oa: 1
oa_version: Preprint
page: 3649 - 3654
project:
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '665385'
name: International IST Doctoral Program
publication: ChemPhysChem
publication_status: published
publisher: Wiley-Blackwell
publist_id: '6140'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Libration of strongly oriented polar molecules inside a superfluid
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 17
year: '2016'
...
---
_id: '1209'
abstract:
- lang: eng
text: 'NADH-ubiquinone oxidoreductase (complex I) is the largest (∼1 MDa) and the
least characterized complex of the mitochondrial electron transport chain. Because
of the ease of sample availability, previous work has focused almost exclusively
on bovine complex I. However, only medium resolution structural analyses of this
complex have been reported. Working with other mammalian complex I homologues
is a potential approach for overcoming these limitations. Due to the inherent
difficulty of expressing large membrane protein complexes, screening of complex
I homologues is limited to large mammals reared for human consumption. The high
sequence identity among these available sources may preclude the benefits of screening.
Here, we report the characterization of complex I purified from Ovis aries (ovine)
heart mitochondria. All 44 unique subunits of the intact complex were identified
by mass spectrometry. We identified differences in the subunit composition of
subcomplexes of ovine complex I as compared with bovine, suggesting differential
stability of inter-subunit interactions within the complex. Furthermore, the 42-kDa
subunit, which is easily lost from the bovine enzyme, remains tightly bound to
ovine complex I. Additionally, we developed a novel purification protocol for
highly active and stable mitochondrial complex I using the branched-chain detergent
lauryl maltose neopentyl glycol. Our data demonstrate that, although closely related,
significant differences exist between the biochemical properties of complex I
prepared from ovine and bovine mitochondria and that ovine complex I represents
a suitable alternative target for further structural studies. '
acknowledgement: "J.A.S supported in part by a Medical Research D.G.Council UK Ph.D.
fellowship.\r\nThis work was supported in part by European Union's 2020 Research
and Innovation Program under Grant 701309. \r\n"
article_processing_charge: No
author:
- first_name: James A
full_name: Letts, James A
id: 322DA418-F248-11E8-B48F-1D18A9856A87
last_name: Letts
orcid: 0000-0002-9864-3586
- first_name: Gianluca
full_name: Degliesposti, Gianluca
last_name: Degliesposti
- first_name: Karol
full_name: Fiedorczuk, Karol
id: 5BFF67CE-02D1-11E9-B11A-A5A4D7DFFFD0
last_name: Fiedorczuk
- first_name: Mark
full_name: Skehel, Mark
last_name: Skehel
- first_name: Leonid A
full_name: Sazanov, Leonid A
id: 338D39FE-F248-11E8-B48F-1D18A9856A87
last_name: Sazanov
orcid: 0000-0002-0977-7989
citation:
ama: Letts JA, Degliesposti G, Fiedorczuk K, Skehel M, Sazanov LA. Purification
of ovine respiratory complex i results in a highly active and stable preparation.
Journal of Biological Chemistry. 2016;291(47):24657-24675. doi:10.1074/jbc.M116.735142
apa: Letts, J. A., Degliesposti, G., Fiedorczuk, K., Skehel, M., & Sazanov,
L. A. (2016). Purification of ovine respiratory complex i results in a highly
active and stable preparation. Journal of Biological Chemistry. American
Society for Biochemistry and Molecular Biology. https://doi.org/10.1074/jbc.M116.735142
chicago: Letts, James A, Gianluca Degliesposti, Karol Fiedorczuk, Mark Skehel, and
Leonid A Sazanov. “Purification of Ovine Respiratory Complex i Results in a Highly
Active and Stable Preparation.” Journal of Biological Chemistry. American
Society for Biochemistry and Molecular Biology, 2016. https://doi.org/10.1074/jbc.M116.735142.
ieee: J. A. Letts, G. Degliesposti, K. Fiedorczuk, M. Skehel, and L. A. Sazanov,
“Purification of ovine respiratory complex i results in a highly active and stable
preparation,” Journal of Biological Chemistry, vol. 291, no. 47. American
Society for Biochemistry and Molecular Biology, pp. 24657–24675, 2016.
ista: Letts JA, Degliesposti G, Fiedorczuk K, Skehel M, Sazanov LA. 2016. Purification
of ovine respiratory complex i results in a highly active and stable preparation.
Journal of Biological Chemistry. 291(47), 24657–24675.
mla: Letts, James A., et al. “Purification of Ovine Respiratory Complex i Results
in a Highly Active and Stable Preparation.” Journal of Biological Chemistry,
vol. 291, no. 47, American Society for Biochemistry and Molecular Biology, 2016,
pp. 24657–75, doi:10.1074/jbc.M116.735142.
short: J.A. Letts, G. Degliesposti, K. Fiedorczuk, M. Skehel, L.A. Sazanov, Journal
of Biological Chemistry 291 (2016) 24657–24675.
corr_author: '1'
date_created: 2018-12-11T11:50:44Z
date_published: 2016-11-18T00:00:00Z
date_updated: 2025-09-22T09:38:04Z
day: '18'
department:
- _id: LeSa
doi: 10.1074/jbc.M116.735142
ec_funded: 1
external_id:
isi:
- '000388875500026'
intvolume: ' 291'
isi: 1
issue: '47'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5114416/
month: '11'
oa: 1
oa_version: Submitted Version
page: 24657 - 24675
project:
- _id: 2593EBD6-B435-11E9-9278-68D0E5697425
name: Atomic-Resolution Structures of Mitochondrial Respiratory Chain Supercomplexes
- _id: 2590DB08-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '701309'
name: Atomic Resolution Structures of Mitochondrial Respiratory Chain Supercomplexes
publication: Journal of Biological Chemistry
publication_status: published
publisher: American Society for Biochemistry and Molecular Biology
publist_id: '6139'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Purification of ovine respiratory complex i results in a highly active and
stable preparation
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 291
year: '2016'
...
---
_id: '1210'
abstract:
- lang: eng
text: Mechanisms for cell protection are essential for survival of multicellular
organisms. In plants, the apical hook, which is transiently formed in darkness
when the germinating seedling penetrates towards the soil surface, plays such
protective role and shields the vitally important shoot apical meristem and cotyledons
from damage. The apical hook is formed by bending of the upper hypocotyl soon
after germination, and it is maintained in a closed stage while the hypocotyl
continues to penetrate through the soil and rapidly opens when exposed to light
in proximity of the soil surface. To uncover the complex molecular network orchestrating
this spatiotemporally tightly coordinated process, monitoring of the apical hook
development in real time is indispensable. Here we describe an imaging platform
that enables high-resolution kinetic analysis of this dynamic developmental process.
© Springer Science+Business Media New York 2017.
acknowledgement: "We thank Herman \r\nHöfte \r\n, Todor Asenov, Robert Hauschield,
and \r\nMarcal Gallemi for help with the establishment of the real-time
\ \r\nimaging platform and technical support. This work was supported \r\nby the
Czech Science Foundation (GA13-39982S) to Eva Benková. \r\nDominique Van Der
\ Straeten acknowledges the Research \r\nFoundation Flanders for fi\r\n
\ nancial support (G.0656.13N). Dajo \r\nSmet holds a PhD fellowship of the
Research Foundation Flanders. "
alternative_title:
- Methods in Molecular Biology
author:
- first_name: Qiang
full_name: Zhu, Qiang
id: 40A4B9E6-F248-11E8-B48F-1D18A9856A87
last_name: Zhu
- first_name: Petra
full_name: Žádníková, Petra
last_name: Žádníková
- first_name: Dajo
full_name: Smet, Dajo
last_name: Smet
- first_name: Dominique
full_name: Van Der Straeten, Dominique
last_name: Van Der Straeten
- first_name: Eva
full_name: Benková, Eva
id: 38F4F166-F248-11E8-B48F-1D18A9856A87
last_name: Benková
orcid: 0000-0002-8510-9739
citation:
ama: 'Zhu Q, Žádníková P, Smet D, Van Der Straeten D, Benková E. Real time analysis
of the apical hook development. In: Plant Hormones. Vol 1497. Humana Press;
2016:1-8. doi:10.1007/978-1-4939-6469-7_1'
apa: Zhu, Q., Žádníková, P., Smet, D., Van Der Straeten, D., & Benková, E. (2016).
Real time analysis of the apical hook development. In Plant Hormones (Vol.
1497, pp. 1–8). Humana Press. https://doi.org/10.1007/978-1-4939-6469-7_1
chicago: Zhu, Qiang, Petra Žádníková, Dajo Smet, Dominique Van Der Straeten, and
Eva Benková. “Real Time Analysis of the Apical Hook Development.” In Plant
Hormones, 1497:1–8. Humana Press, 2016. https://doi.org/10.1007/978-1-4939-6469-7_1.
ieee: Q. Zhu, P. Žádníková, D. Smet, D. Van Der Straeten, and E. Benková, “Real
time analysis of the apical hook development,” in Plant Hormones, vol.
1497, Humana Press, 2016, pp. 1–8.
ista: 'Zhu Q, Žádníková P, Smet D, Van Der Straeten D, Benková E. 2016.Real time
analysis of the apical hook development. In: Plant Hormones. Methods in Molecular
Biology, vol. 1497, 1–8.'
mla: Zhu, Qiang, et al. “Real Time Analysis of the Apical Hook Development.” Plant
Hormones, vol. 1497, Humana Press, 2016, pp. 1–8, doi:10.1007/978-1-4939-6469-7_1.
short: Q. Zhu, P. Žádníková, D. Smet, D. Van Der Straeten, E. Benková, in:, Plant
Hormones, Humana Press, 2016, pp. 1–8.
date_created: 2018-12-11T11:50:44Z
date_published: 2016-11-19T00:00:00Z
date_updated: 2021-01-12T06:49:07Z
day: '19'
department:
- _id: EvBe
doi: 10.1007/978-1-4939-6469-7_1
intvolume: ' 1497'
language:
- iso: eng
month: '11'
oa_version: None
page: 1 - 8
publication: Plant Hormones
publication_status: published
publisher: Humana Press
publist_id: '6135'
quality_controlled: '1'
scopus_import: 1
status: public
title: Real time analysis of the apical hook development
type: book_chapter
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 1497
year: '2016'
...
---
_id: '1212'
abstract:
- lang: eng
text: 'Plants adjust their growth according to gravity. Gravitropism involves gravity
perception, signal transduction, and asymmetric growth response, with organ bending
as a consequence [1]. Asymmetric growth results from the asymmetric distribution
of the plant-specific signaling molecule auxin [2] that is generated by lateral
transport, mediated in the hypocotyl predominantly by the auxin transporter PIN-FORMED3
(PIN3) [3–5]. Gravity stimulation polarizes PIN3 to the bottom sides of endodermal
cells, correlating with increased auxin accumulation in adjacent tissues at the
lower side of the stimulated organ, where auxin induces cell elongation and, hence,
organ bending. A curvature response allows the hypocotyl to resume straight growth
at a defined angle [6], implying that at some point auxin symmetry is restored
to prevent overbending. Here, we present initial insights into cellular and molecular
mechanisms that lead to the termination of the tropic response. We identified
an auxin feedback on PIN3 polarization as underlying mechanism that restores symmetry
of the PIN3-dependent auxin flow. Thus, two mechanistically distinct PIN3 polarization
events redirect auxin fluxes at different time points of the gravity response:
first, gravity-mediated redirection of PIN3-mediated auxin flow toward the lower
hypocotyl side, where auxin gradually accumulates and promotes growth, and later
PIN3 polarization to the opposite cell side, depleting this auxin maximum to end
the bending. Accordingly, genetic or pharmacological interference with the late
PIN3 polarization prevents termination of the response and leads to hypocotyl
overbending. This observation reveals a role of auxin feedback on PIN polarity
in the termination of the tropic response. © 2016 Elsevier Ltd'
acknowledgement: "We thank Dr. Jie Li (Key Laboratory of Plant Molecular Physiology,
Chinese Academy of Science, China) for the pPIN3::PIN3-GFP/DII::VENUS line and Martine
De Cock for help in preparing the manuscript. This work was supported by the European
Research Council (project ERC-2011-StG-20101109-PSDP), by the Czech Science Foundation
GAČR (GA13-40637S) to J.F., and by the Ministry of Education, Youth and Sports of
the Czech Republic under the project CEITEC 2020 (LQ1601) to H.S.R. H.R. is indebted
to the Agency for Innovation by Science and Technology (IWT) for a predoctoral fellowship.\r\n"
article_processing_charge: No
author:
- first_name: Hana
full_name: Rakusová, Hana
last_name: Rakusová
- first_name: Mohamad
full_name: Abbas, Mohamad
id: 47E8FC1C-F248-11E8-B48F-1D18A9856A87
last_name: Abbas
- first_name: Huibin
full_name: Han, Huibin
id: 31435098-F248-11E8-B48F-1D18A9856A87
last_name: Han
- first_name: Siyuan
full_name: Song, Siyuan
last_name: Song
- first_name: Hélène
full_name: Robert, Hélène
last_name: Robert
- first_name: Jirí
full_name: Friml, Jirí
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Rakusová H, Abbas M, Han H, Song S, Robert H, Friml J. Termination of shoot
gravitropic responses by auxin feedback on PIN3 polarity. Current Biology.
2016;26(22):3026-3032. doi:10.1016/j.cub.2016.08.067
apa: Rakusová, H., Abbas, M., Han, H., Song, S., Robert, H., & Friml, J. (2016).
Termination of shoot gravitropic responses by auxin feedback on PIN3 polarity.
Current Biology. Cell Press. https://doi.org/10.1016/j.cub.2016.08.067
chicago: Rakusová, Hana, Mohamad Abbas, Huibin Han, Siyuan Song, Hélène Robert,
and Jiří Friml. “Termination of Shoot Gravitropic Responses by Auxin Feedback
on PIN3 Polarity.” Current Biology. Cell Press, 2016. https://doi.org/10.1016/j.cub.2016.08.067.
ieee: H. Rakusová, M. Abbas, H. Han, S. Song, H. Robert, and J. Friml, “Termination
of shoot gravitropic responses by auxin feedback on PIN3 polarity,” Current
Biology, vol. 26, no. 22. Cell Press, pp. 3026–3032, 2016.
ista: Rakusová H, Abbas M, Han H, Song S, Robert H, Friml J. 2016. Termination of
shoot gravitropic responses by auxin feedback on PIN3 polarity. Current Biology.
26(22), 3026–3032.
mla: Rakusová, Hana, et al. “Termination of Shoot Gravitropic Responses by Auxin
Feedback on PIN3 Polarity.” Current Biology, vol. 26, no. 22, Cell Press,
2016, pp. 3026–32, doi:10.1016/j.cub.2016.08.067.
short: H. Rakusová, M. Abbas, H. Han, S. Song, H. Robert, J. Friml, Current Biology
26 (2016) 3026–3032.
date_created: 2018-12-11T11:50:44Z
date_published: 2016-11-21T00:00:00Z
date_updated: 2026-04-28T08:29:26Z
day: '21'
ddc:
- '581'
department:
- _id: JiFr
doi: 10.1016/j.cub.2016.08.067
ec_funded: 1
external_id:
isi:
- '000388545900020'
file:
- access_level: open_access
checksum: 79ed2498185a027cf51a8f88100379e6
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:09:33Z
date_updated: 2020-07-14T12:44:39Z
file_id: '4757'
file_name: IST-2018-1008-v1+1_Rakusova_CurrBiol_2016_proof.pdf
file_size: 5391923
relation: main_file
file_date_updated: 2020-07-14T12:44:39Z
has_accepted_license: '1'
intvolume: ' 26'
isi: 1
issue: '22'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Submitted Version
page: 3026 - 3032
project:
- _id: 25716A02-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '282300'
name: Polarity and subcellular dynamics in plants
publication: Current Biology
publication_status: published
publisher: Cell Press
publist_id: '6138'
pubrep_id: '1008'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Termination of shoot gravitropic responses by auxin feedback on PIN3 polarity
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 26
year: '2016'
...
---
_id: '1214'
abstract:
- lang: eng
text: 'With the accelerated development of robot technologies, optimal control becomes
one of the central themes of research. In traditional approaches, the controller,
by its internal functionality, finds appropriate actions on the basis of the history
of sensor values, guided by the goals, intentions, objectives, learning schemes,
and so forth. While very successful with classical robots, these methods run into
severe difficulties when applied to soft robots, a new field of robotics with
large interest for human-robot interaction. We claim that a novel controller paradigm
opens new perspective for this field. This paper applies a recently developed
neuro controller with differential extrinsic synaptic plasticity to a muscle-tendon
driven arm-shoulder system from the Myorobotics toolkit. In the experiments, we
observe a vast variety of self-organized behavior patterns: when left alone, the
arm realizes pseudo-random sequences of different poses. By applying physical
forces, the system can be entrained into definite motion patterns like wiping
a table. Most interestingly, after attaching an object, the controller gets in
a functional resonance with the object''s internal dynamics, starting to shake
spontaneously bottles half-filled with water or sensitively driving an attached
pendulum into a circular mode. When attached to the crank of a wheel the neural
system independently develops to rotate it. In this way, the robot discovers affordances
of objects its body is interacting with.'
acknowledgement: RD thanks for the hospitality at the Max-Planck-Institute and for
helpful discussions with Nihat Ay and Keyan Zahedi.
article_number: '7759138'
author:
- first_name: Georg S
full_name: Martius, Georg S
id: 3A276B68-F248-11E8-B48F-1D18A9856A87
last_name: Martius
- first_name: Raphael
full_name: Hostettler, Raphael
last_name: Hostettler
- first_name: Alois
full_name: Knoll, Alois
last_name: Knoll
- first_name: Ralf
full_name: Der, Ralf
last_name: Der
citation:
ama: 'Martius GS, Hostettler R, Knoll A, Der R. Compliant control for soft robots:
Emergent behavior of a tendon driven anthropomorphic arm. In: Vol 2016-November.
IEEE; 2016. doi:10.1109/IROS.2016.7759138'
apa: 'Martius, G. S., Hostettler, R., Knoll, A., & Der, R. (2016). Compliant
control for soft robots: Emergent behavior of a tendon driven anthropomorphic
arm (Vol. 2016–November). Presented at the IEEE RSJ International Conference on
Intelligent Robots and Systems IROS , Daejeon, Korea: IEEE. https://doi.org/10.1109/IROS.2016.7759138'
chicago: 'Martius, Georg S, Raphael Hostettler, Alois Knoll, and Ralf Der. “Compliant
Control for Soft Robots: Emergent Behavior of a Tendon Driven Anthropomorphic
Arm,” Vol. 2016–November. IEEE, 2016. https://doi.org/10.1109/IROS.2016.7759138.'
ieee: 'G. S. Martius, R. Hostettler, A. Knoll, and R. Der, “Compliant control for
soft robots: Emergent behavior of a tendon driven anthropomorphic arm,” presented
at the IEEE RSJ International Conference on Intelligent Robots and Systems IROS
, Daejeon, Korea, 2016, vol. 2016–November.'
ista: 'Martius GS, Hostettler R, Knoll A, Der R. 2016. Compliant control for soft
robots: Emergent behavior of a tendon driven anthropomorphic arm. IEEE RSJ International
Conference on Intelligent Robots and Systems IROS vol. 2016–November, 7759138.'
mla: 'Martius, Georg S., et al. Compliant Control for Soft Robots: Emergent Behavior
of a Tendon Driven Anthropomorphic Arm. Vol. 2016–November, 7759138, IEEE,
2016, doi:10.1109/IROS.2016.7759138.'
short: G.S. Martius, R. Hostettler, A. Knoll, R. Der, in:, IEEE, 2016.
conference:
end_date: 2016-09-14
location: Daejeon, Korea
name: 'IEEE RSJ International Conference on Intelligent Robots and Systems IROS '
start_date: 2016-09-09
date_created: 2018-12-11T11:50:45Z
date_published: 2016-11-28T00:00:00Z
date_updated: 2021-01-12T06:49:08Z
day: '28'
department:
- _id: ChLa
- _id: GaTk
doi: 10.1109/IROS.2016.7759138
language:
- iso: eng
month: '11'
oa_version: None
publication_status: published
publisher: IEEE
publist_id: '6121'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'Compliant control for soft robots: Emergent behavior of a tendon driven anthropomorphic
arm'
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 2016-November
year: '2016'
...
---
OA_place: repository
OA_type: green
_id: '22037'
abstract:
- lang: eng
text: The goal of this paper was to develop some basic harmonic analysis tools for
the Dirichlet–Laplacian in the exterior domain associated to a smooth convex obstacle
in dimensions d>=3. Specifically, we will discuss analogues of the Mikhlin Multiplier
Theorem, Littlewood–Paley Theory, and Hardy inequalities, culminating in a proof
that homogeneous Sobolev norms defined with respect to the Dirichlet and whole-space
Laplacians are equivalent for the sharp ranges of integrability exponent p and
regularity s. Counterexamples are included to show that these results are indeed
sharp. In particular, we precisely settle the question of boundedness of Riesz
transforms on L^p, including the endpoint. The utility of such results in the
study of nonlinear partial differential equation (PDE) is that they allow us to
deduce important results, such as the fractional product and chain rules for the
Dirichlet–Laplacian, directly from the classical Euclidean setting. As an application,
we discuss the local well-posedness and stability problems for energy-critical
NLS. All the results of this paper play an essential role in the authors' proof
of large-data global well-posedness and scattering for the energy-critical NLS
in three-dimensional exterior domains; see [29].
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Rowan
full_name: Killip, Rowan
last_name: Killip
- first_name: Monica
full_name: Visan, Monica
id: 056daca0-b8d1-11f0-964f-f91054abf8ca
last_name: Visan
- first_name: Xiaoyi
full_name: Zhang, Xiaoyi
last_name: Zhang
citation:
ama: Killip R, Vişan M, Zhang X. Riesz transforms outside a convex obstacle. International
Mathematics Research Notices. 2016;2016(19):5875-5921. doi:10.1093/imrn/rnv338
apa: Killip, R., Vişan, M., & Zhang, X. (2016). Riesz transforms outside a convex
obstacle. International Mathematics Research Notices. Oxford University
Press. https://doi.org/10.1093/imrn/rnv338
chicago: Killip, Rowan, Monica Vişan, and Xiaoyi Zhang. “Riesz Transforms Outside
a Convex Obstacle.” International Mathematics Research Notices. Oxford
University Press, 2016. https://doi.org/10.1093/imrn/rnv338.
ieee: R. Killip, M. Vişan, and X. Zhang, “Riesz transforms outside a convex obstacle,”
International Mathematics Research Notices, vol. 2016, no. 19. Oxford University
Press, pp. 5875–5921, 2016.
ista: Killip R, Vişan M, Zhang X. 2016. Riesz transforms outside a convex obstacle.
International Mathematics Research Notices. 2016(19), 5875–5921.
mla: Killip, Rowan, et al. “Riesz Transforms Outside a Convex Obstacle.” International
Mathematics Research Notices, vol. 2016, no. 19, Oxford University Press,
2016, pp. 5875–921, doi:10.1093/imrn/rnv338.
short: R. Killip, M. Vişan, X. Zhang, International Mathematics Research Notices
2016 (2016) 5875–5921.
das_tickbox: '1'
date_created: 2026-06-19T07:44:28Z
date_published: 2016-01-01T00:00:00Z
date_updated: 2026-06-22T13:09:52Z
day: '01'
doi: 10.1093/imrn/rnv338
extern: '1'
external_id:
arxiv:
- '1205.5784'
intvolume: ' 2016'
issue: '19'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.1205.5784
month: '01'
oa: 1
oa_version: Preprint
page: 5875-5921
publication: International Mathematics Research Notices
publication_identifier:
eissn:
- 1687-0247
issn:
- 1073-7928
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Riesz transforms outside a convex obstacle
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2016
year: '2016'
...
---
OA_place: repository
OA_type: green
_id: '22041'
abstract:
- lang: eng
text: We consider the defocusing energy-critical nonlinear Schr\"odinger equation
in the exterior of a smooth compact strictly convex obstacle in three dimensions.
For the initial-value problem with Dirichlet boundary condition we prove global
well-posedness and scattering for all initial data in the energy space.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Rowan
full_name: Killip, Rowan
last_name: Killip
- first_name: Monica
full_name: Visan, Monica
id: 056daca0-b8d1-11f0-964f-f91054abf8ca
last_name: Visan
- first_name: Xiaoyi
full_name: Zhang, Xiaoyi
last_name: Zhang
citation:
ama: Killip R, Vişan M, Zhang X. Quintic NLS in the exterior of a strictly convex
obstacle. American Journal of Mathematics. 2016;138(5):1193-1346. doi:10.1353/ajm.2016.0039
apa: Killip, R., Vişan, M., & Zhang, X. (2016). Quintic NLS in the exterior
of a strictly convex obstacle. American Journal of Mathematics. Johns Hopkins
University Press. https://doi.org/10.1353/ajm.2016.0039
chicago: Killip, Rowan, Monica Vişan, and Xiaoyi Zhang. “Quintic NLS in the Exterior
of a Strictly Convex Obstacle.” American Journal of Mathematics. Johns
Hopkins University Press, 2016. https://doi.org/10.1353/ajm.2016.0039.
ieee: R. Killip, M. Vişan, and X. Zhang, “Quintic NLS in the exterior of a strictly
convex obstacle,” American Journal of Mathematics, vol. 138, no. 5. Johns
Hopkins University Press, pp. 1193–1346, 2016.
ista: Killip R, Vişan M, Zhang X. 2016. Quintic NLS in the exterior of a strictly
convex obstacle. American Journal of Mathematics. 138(5), 1193–1346.
mla: Killip, Rowan, et al. “Quintic NLS in the Exterior of a Strictly Convex Obstacle.”
American Journal of Mathematics, vol. 138, no. 5, Johns Hopkins University
Press, 2016, pp. 1193–346, doi:10.1353/ajm.2016.0039.
short: R. Killip, M. Vişan, X. Zhang, American Journal of Mathematics 138 (2016)
1193–1346.
das_tickbox: '1'
date_created: 2026-06-19T07:45:53Z
date_published: 2016-10-01T00:00:00Z
date_updated: 2026-06-22T13:20:45Z
day: '01'
doi: 10.1353/ajm.2016.0039
extern: '1'
external_id:
arxiv:
- '1208.4904'
intvolume: ' 138'
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.1208.4904
month: '10'
oa: 1
oa_version: Preprint
page: 1193-1346
publication: American Journal of Mathematics
publication_identifier:
eissn:
- 1080-6377
publication_status: published
publisher: Johns Hopkins University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Quintic NLS in the exterior of a strictly convex obstacle
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 138
year: '2016'
...
---
OA_place: repository
OA_type: green
_id: '261'
abstract:
- lang: eng
text: Let G = SL(2, R) ⋉R2 and Γ = SL(2, Z) ⋉Z2. Building on recent work of Strömbergsson,
we prove a rate of equidistribution for the orbits of a certain one-dimensional
unipotent flow of Γ\G, which projects to a closed horocycle in the unit tangent
bundle to the modular surface. We use this to answer a question of Elkies and
McMullen by making effective the convergence of the gap distribution of √n mod
1.
acknowledgement: The research leading to these results has received funding from the
European Research Council under the European Union’s Seventh Framework Programme
(FP/2007–2013)/ERC Grant Agreements 291147 and 306457.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Timothy D
full_name: Browning, Timothy D
id: 35827D50-F248-11E8-B48F-1D18A9856A87
last_name: Browning
orcid: 0000-0002-8314-0177
- first_name: Ilya
full_name: Vinogradov, Ilya
last_name: Vinogradov
citation:
ama: Browning TD, Vinogradov I. Effective ratner theorem for SL (2, R) ⋉R2 and gaps
in √n modulo 1. Journal of the London Mathematical Society. 2016;94(1):61-84.
doi:10.1112/jlms/jdw025
apa: Browning, T. D., & Vinogradov, I. (2016). Effective ratner theorem for
SL (2, R) ⋉R2 and gaps in √n modulo 1. Journal of the London Mathematical Society.
Wiley. https://doi.org/10.1112/jlms/jdw025
chicago: Browning, Timothy D, and Ilya Vinogradov. “Effective Ratner Theorem for
SL (2, R) ⋉R2 and Gaps in √n modulo 1.” Journal of the London Mathematical
Society. Wiley, 2016. https://doi.org/10.1112/jlms/jdw025.
ieee: T. D. Browning and I. Vinogradov, “Effective ratner theorem for SL (2, R)
⋉R2 and gaps in √n modulo 1,” Journal of the London Mathematical Society,
vol. 94, no. 1. Wiley, pp. 61–84, 2016.
ista: Browning TD, Vinogradov I. 2016. Effective ratner theorem for SL (2, R) ⋉R2
and gaps in √n modulo 1. Journal of the London Mathematical Society. 94(1), 61–84.
mla: Browning, Timothy D., and Ilya Vinogradov. “Effective Ratner Theorem for SL
(2, R) ⋉R2 and Gaps in √n modulo 1.” Journal of the London Mathematical Society,
vol. 94, no. 1, Wiley, 2016, pp. 61–84, doi:10.1112/jlms/jdw025.
short: T.D. Browning, I. Vinogradov, Journal of the London Mathematical Society
94 (2016) 61–84.
date_created: 2018-12-11T11:45:29Z
date_published: 2016-05-24T00:00:00Z
date_updated: 2026-05-20T06:57:42Z
day: '24'
doi: 10.1112/jlms/jdw025
extern: '1'
external_id:
arxiv:
- '1311.6387'
intvolume: ' 94'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: ' https://doi.org/10.48550/arXiv.1311.6387'
month: '05'
oa: 1
oa_version: Preprint
page: 61 - 84
publication: Journal of the London Mathematical Society
publication_identifier:
eissn:
- 1469-7750
issn:
- 0024-6107
publication_status: published
publisher: Wiley
publist_id: '7641'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Effective ratner theorem for SL (2, R) ⋉R2 and gaps in √n modulo 1
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 94
year: '2016'
...
---
OA_place: repository
OA_type: green
_id: '262'
abstract:
- lang: eng
text: For any number field we calculate the exact proportion of rational numbers
which are everywhere locally a norm but not globally a norm from the number field.
acknowledgement: While working on this paper the first author was supported by ERC
grant 306457.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Timothy D
full_name: Browning, Timothy D
id: 35827D50-F248-11E8-B48F-1D18A9856A87
last_name: Browning
orcid: 0000-0002-8314-0177
- first_name: Rachel
full_name: Newton, Rachel
last_name: Newton
citation:
ama: Browning TD, Newton R. The proportion of failures of the Hasse norm principle.
Mathematika. 2016;62(2):337-347. doi:10.1112/S0025579315000261
apa: Browning, T. D., & Newton, R. (2016). The proportion of failures of the
Hasse norm principle. Mathematika. Cambridge University Press. https://doi.org/10.1112/S0025579315000261
chicago: Browning, Timothy D, and Rachel Newton. “The Proportion of Failures of
the Hasse Norm Principle.” Mathematika. Cambridge University Press, 2016.
https://doi.org/10.1112/S0025579315000261.
ieee: T. D. Browning and R. Newton, “The proportion of failures of the Hasse norm
principle,” Mathematika, vol. 62, no. 2. Cambridge University Press, pp.
337–347, 2016.
ista: Browning TD, Newton R. 2016. The proportion of failures of the Hasse norm
principle. Mathematika. 62(2), 337–347.
mla: Browning, Timothy D., and Rachel Newton. “The Proportion of Failures of the
Hasse Norm Principle.” Mathematika, vol. 62, no. 2, Cambridge University
Press, 2016, pp. 337–47, doi:10.1112/S0025579315000261.
short: T.D. Browning, R. Newton, Mathematika 62 (2016) 337–347.
date_created: 2018-12-11T11:45:29Z
date_published: 2016-01-22T00:00:00Z
date_updated: 2026-05-20T07:02:13Z
day: '22'
doi: 10.1112/S0025579315000261
extern: '1'
external_id:
arxiv:
- '1411.7775'
intvolume: ' 62'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: ' https://doi.org/10.48550/arXiv.1411.7775'
month: '01'
oa: 1
oa_version: Preprint
page: 337 - 347
publication: Mathematika
publication_identifier:
eissn:
- ' 2041-7942'
issn:
- 0025-5793
publication_status: published
publisher: Cambridge University Press
publist_id: '7640'
quality_controlled: '1'
scopus_import: '1'
status: public
title: The proportion of failures of the Hasse norm principle
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 62
year: '2016'
...
---
OA_place: repository
OA_type: green
_id: '263'
abstract:
- lang: eng
text: We count rational points of bounded height on the Cayley ruled cubic surface
and interpret the result in the context of general conjectures due to Batyrev
and Tschinkel.
acknowledgement: 'While working on this paper the first author was supported by an
IUF Junior and the second author was supported by ERC grant 306457. '
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Régis
full_name: De La Bretèche, Régis
last_name: De La Bretèche
- first_name: Timothy D
full_name: Browning, Timothy D
id: 35827D50-F248-11E8-B48F-1D18A9856A87
last_name: Browning
orcid: 0000-0002-8314-0177
- first_name: Per
full_name: Salberger, Per
last_name: Salberger
citation:
ama: De La Bretèche R, Browning TD, Salberger P. Counting rational points on the
Cayley ruled cubic. European Journal of Mathematics. 2016;2:55-72. doi:10.1007/s40879-015-0049-1
apa: De La Bretèche, R., Browning, T. D., & Salberger, P. (2016). Counting rational
points on the Cayley ruled cubic. European Journal of Mathematics. Springer
Nature. https://doi.org/10.1007/s40879-015-0049-1
chicago: De La Bretèche, Régis, Timothy D Browning, and Per Salberger. “Counting
Rational Points on the Cayley Ruled Cubic.” European Journal of Mathematics.
Springer Nature, 2016. https://doi.org/10.1007/s40879-015-0049-1.
ieee: R. De La Bretèche, T. D. Browning, and P. Salberger, “Counting rational points
on the Cayley ruled cubic,” European Journal of Mathematics, vol. 2. Springer
Nature, pp. 55–72, 2016.
ista: De La Bretèche R, Browning TD, Salberger P. 2016. Counting rational points
on the Cayley ruled cubic. European Journal of Mathematics. 2, 55–72.
mla: De La Bretèche, Régis, et al. “Counting Rational Points on the Cayley Ruled
Cubic.” European Journal of Mathematics, vol. 2, Springer Nature, 2016,
pp. 55–72, doi:10.1007/s40879-015-0049-1.
short: R. De La Bretèche, T.D. Browning, P. Salberger, European Journal of Mathematics
2 (2016) 55–72.
date_created: 2018-12-11T11:45:30Z
date_published: 2016-03-01T00:00:00Z
date_updated: 2026-05-20T07:05:23Z
day: '01'
doi: 10.1007/s40879-015-0049-1
extern: '1'
external_id:
arxiv:
- '1410.3855'
intvolume: ' 2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1410.3855
month: '03'
oa: 1
oa_version: Preprint
page: 55 - 72
publication: European Journal of Mathematics
publication_identifier:
eissn:
- 2199-6768
issn:
- 2199-675X
publication_status: published
publisher: Springer Nature
publist_id: '7639'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Counting rational points on the Cayley ruled cubic
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 2
year: '2016'
...
---
OA_place: repository
OA_type: green
_id: '264'
abstract:
- lang: eng
text: Given a family of varieties over a number field, we determine conditions under
which there is a Brauer-Manin obstruction to weak approximation for 100% of the
fibres which are everywhere locally soluble.
acknowledgement: While working on this paper the second author was supported by ERC
grant 306457.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Maritn
full_name: Bright, Maritn
last_name: Bright
- first_name: Timothy D
full_name: Browning, Timothy D
id: 35827D50-F248-11E8-B48F-1D18A9856A87
last_name: Browning
orcid: 0000-0002-8314-0177
- first_name: Daniel
full_name: Loughran, Daniel
last_name: Loughran
citation:
ama: Bright M, Browning TD, Loughran D. Failures of weak approximation in families.
Compositio Mathematica. 2016;152(7):1435-1475. doi:10.1112/S0010437X16007405
apa: Bright, M., Browning, T. D., & Loughran, D. (2016). Failures of weak approximation
in families. Compositio Mathematica. Cambridge University Press. https://doi.org/10.1112/S0010437X16007405
chicago: Bright, Maritn, Timothy D Browning, and Daniel Loughran. “Failures of Weak
Approximation in Families.” Compositio Mathematica. Cambridge University
Press, 2016. https://doi.org/10.1112/S0010437X16007405.
ieee: M. Bright, T. D. Browning, and D. Loughran, “Failures of weak approximation
in families,” Compositio Mathematica, vol. 152, no. 7. Cambridge University
Press, pp. 1435–1475, 2016.
ista: Bright M, Browning TD, Loughran D. 2016. Failures of weak approximation in
families. Compositio Mathematica. 152(7), 1435–1475.
mla: Bright, Maritn, et al. “Failures of Weak Approximation in Families.” Compositio
Mathematica, vol. 152, no. 7, Cambridge University Press, 2016, pp. 1435–75,
doi:10.1112/S0010437X16007405.
short: M. Bright, T.D. Browning, D. Loughran, Compositio Mathematica 152 (2016)
1435–1475.
date_created: 2018-12-11T11:45:30Z
date_published: 2016-07-01T00:00:00Z
date_updated: 2026-05-13T14:57:20Z
day: '01'
doi: 10.1112/S0010437X16007405
extern: '1'
external_id:
arxiv:
- '1506.01817'
intvolume: ' 152'
issue: '7'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: ' https://doi.org/10.48550/arXiv.1506.01817'
month: '07'
oa: 1
oa_version: Preprint
page: 1435 - 1475
publication: Compositio Mathematica
publication_identifier:
eissn:
- 1570-5846
issn:
- 0010-437X
publication_status: published
publisher: Cambridge University Press
publist_id: '7638'
status: public
title: Failures of weak approximation in families
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 152
year: '2016'
...
---
_id: '1216'
abstract:
- lang: eng
text: 'A framework fo r extracting features in 2D transient flows, based on the
acceleration field to ensure Galilean invariance is proposed in this paper. The
minima of the acceleration magnitude (a superset of acceleration zeros) are extracted
and discriminated into vortices and saddle points, based on the spectral properties
of the velocity Jacobian. The extraction of topological features is performed
with purely combinatorial algorithms from discrete computational topology. The
feature points are prioritized with persistence, as a physically meaningful importance
measure. These feature points are tracked in time with a robust algorithm for
tracking features. Thus, a space-time hierarchy of the minima is built and vortex
merging events are detected. We apply the acceleration feature extraction strategy
to three two-dimensional shear flows: (1) an incompressible periodic cylinder
wake, (2) an incompressible planar mixing layer and (3) a weakly compressible
planar jet. The vortex-like acceleration feature points are shown to be well aligned
with acceleration zeros, maxima of the vorticity magnitude, minima of the pressure
field and minima of λ2.'
acknowledgement: "The authors acknowledge funding of the German Re-\r\nsearch Foundation
\ (DFG) via the Collaborative Re-\r\nsearch Center (SFB 557) \\Control of
\ Complex Turbu-\r\nlent Shear Flows\" and the Emmy Noether Program.\r\nFurther
\ funding was provided by the Zuse Institute\r\nBerlin (ZIB), the DFG-CNRS
\ research group \\Noise\r\nGeneration in Turbulent Flows\" (2003{2010), the Chaire\r\nd'Excellence
'Closed-loop control of turbulent shear ows\r\nusing reduced-order models' (TUCOROM)
of the French\r\nAgence Nationale de la Recherche (ANR), and the Eu-\r\nropean Social
\ Fund (ESF App. No. 100098251). We\r\nthank the Ambrosys Ltd. Society
\ for Complex Sys-\r\ntems Management and the Bernd R. Noack Cybernet-\r\nics
\ Foundation for additional support. A part of this\r\nwork was performed
using HPC resources from GENCI-[CCRT/CINES/IDRIS] supported by the Grant 2011-\r\n[x2011020912"
article_processing_charge: No
author:
- first_name: Jens
full_name: Kasten, Jens
last_name: Kasten
- first_name: Jan
full_name: Reininghaus, Jan
id: 4505473A-F248-11E8-B48F-1D18A9856A87
last_name: Reininghaus
- first_name: Ingrid
full_name: Hotz, Ingrid
last_name: Hotz
- first_name: Hans
full_name: Hege, Hans
last_name: Hege
- first_name: Bernd
full_name: Noack, Bernd
last_name: Noack
- first_name: Guillaume
full_name: Daviller, Guillaume
last_name: Daviller
- first_name: Marek
full_name: Morzyński, Marek
last_name: Morzyński
citation:
ama: Kasten J, Reininghaus J, Hotz I, et al. Acceleration feature points of unsteady
shear flows. Archives of Mechanics. 2016;68(1):55-80.
apa: Kasten, J., Reininghaus, J., Hotz, I., Hege, H., Noack, B., Daviller, G., &
Morzyński, M. (2016). Acceleration feature points of unsteady shear flows. Archives
of Mechanics. Polish Academy of Sciences Publishing House.
chicago: Kasten, Jens, Jan Reininghaus, Ingrid Hotz, Hans Hege, Bernd Noack, Guillaume
Daviller, and Marek Morzyński. “Acceleration Feature Points of Unsteady Shear
Flows.” Archives of Mechanics. Polish Academy of Sciences Publishing House,
2016.
ieee: J. Kasten et al., “Acceleration feature points of unsteady shear flows,”
Archives of Mechanics, vol. 68, no. 1. Polish Academy of Sciences Publishing
House, pp. 55–80, 2016.
ista: Kasten J, Reininghaus J, Hotz I, Hege H, Noack B, Daviller G, Morzyński M.
2016. Acceleration feature points of unsteady shear flows. Archives of Mechanics.
68(1), 55–80.
mla: Kasten, Jens, et al. “Acceleration Feature Points of Unsteady Shear Flows.”
Archives of Mechanics, vol. 68, no. 1, Polish Academy of Sciences Publishing
House, 2016, pp. 55–80.
short: J. Kasten, J. Reininghaus, I. Hotz, H. Hege, B. Noack, G. Daviller, M. Morzyński,
Archives of Mechanics 68 (2016) 55–80.
date_created: 2018-12-11T11:50:46Z
date_published: 2016-01-01T00:00:00Z
date_updated: 2026-06-18T17:23:52Z
day: '01'
ddc:
- '500'
department:
- _id: HeEd
intvolume: ' 68'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://am.ippt.pan.pl/am/article/viewFile/v68p55/pdf
month: '01'
oa: 1
oa_version: Published Version
page: 55 - 80
publication: Archives of Mechanics
publication_status: published
publisher: Polish Academy of Sciences Publishing House
publist_id: '6118'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Acceleration feature points of unsteady shear flows
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 68
year: '2016'
...
---
_id: '1217'
abstract:
- lang: eng
text: Understanding the regulation of T-cell responses during inflammation and auto-immunity
is fundamental for designing efficient therapeutic strategies against immune diseases.
In this regard, prostaglandin E 2 (PGE 2) is mostly considered a myeloid-derived
immunosuppressive molecule. We describe for the first time that T cells secrete
PGE 2 during T-cell receptor stimulation. In addition, we show that autocrine
PGE 2 signaling through EP receptors is essential for optimal CD4 + T-cell activation
in vitro and in vivo, and for T helper 1 (Th1) and regulatory T cell differentiation.
PGE 2 was found to provide additive co-stimulatory signaling through AKT activation.
Intravital multiphoton microscopy showed that triggering EP receptors in T cells
is also essential for the stability of T cell-dendritic cell (DC) interactions
and Th-cell accumulation in draining lymph nodes (LNs) during inflammation. We
further demonstrated that blocking EP receptors in T cells during the initial
phase of collagen-induced arthritis in mice resulted in a reduction of clinical
arthritis. This could be attributable to defective T-cell activation, accompanied
by a decline in activated and interferon-γ-producing CD4 + Th1 cells in draining
LNs. In conclusion, we prove that T lymphocytes secret picomolar concentrations
of PGE 2, which in turn provide additive co-stimulatory signaling, enabling T
cells to attain a favorable activation threshold. PGE 2 signaling in T cells is
also required for maintaining long and stable interactions with DCs within LNs.
Blockade of EP receptors in vivo impairs T-cell activation and development of
T cell-mediated inflammatory responses. This may have implications in various
pathophysiological settings.
acknowledgement: This manuscript has been supported by grants SAF2007-61716 and S-SAL-0159/2006
awarded by the Spanish Ministry of Science and Education and the Community of Madrid
to Dr M Fresno.
article_processing_charge: No
author:
- first_name: Vinatha
full_name: Sreeramkumar, Vinatha
last_name: Sreeramkumar
- first_name: Miroslav
full_name: Hons, Miroslav
id: 4167FE56-F248-11E8-B48F-1D18A9856A87
last_name: Hons
orcid: 0000-0002-6625-3348
- first_name: Carmen
full_name: Punzón, Carmen
last_name: Punzón
- first_name: Jens
full_name: Stein, Jens
last_name: Stein
- first_name: David
full_name: Sancho, David
last_name: Sancho
- first_name: Manuel
full_name: Fresno Forcelledo, Manuel
last_name: Fresno Forcelledo
- first_name: Natalia
full_name: Cuesta, Natalia
last_name: Cuesta
citation:
ama: Sreeramkumar V, Hons M, Punzón C, et al. Efficient T-cell priming and activation
requires signaling through prostaglandin E2 (EP) receptors. Immunology and
Cell Biology. 2016;94(1):39-51. doi:10.1038/icb.2015.62
apa: Sreeramkumar, V., Hons, M., Punzón, C., Stein, J., Sancho, D., Fresno Forcelledo,
M., & Cuesta, N. (2016). Efficient T-cell priming and activation requires
signaling through prostaglandin E2 (EP) receptors. Immunology and Cell Biology.
Nature Publishing Group. https://doi.org/10.1038/icb.2015.62
chicago: Sreeramkumar, Vinatha, Miroslav Hons, Carmen Punzón, Jens Stein, David
Sancho, Manuel Fresno Forcelledo, and Natalia Cuesta. “Efficient T-Cell Priming
and Activation Requires Signaling through Prostaglandin E2 (EP) Receptors.” Immunology
and Cell Biology. Nature Publishing Group, 2016. https://doi.org/10.1038/icb.2015.62.
ieee: V. Sreeramkumar et al., “Efficient T-cell priming and activation requires
signaling through prostaglandin E2 (EP) receptors,” Immunology and Cell Biology,
vol. 94, no. 1. Nature Publishing Group, pp. 39–51, 2016.
ista: Sreeramkumar V, Hons M, Punzón C, Stein J, Sancho D, Fresno Forcelledo M,
Cuesta N. 2016. Efficient T-cell priming and activation requires signaling through
prostaglandin E2 (EP) receptors. Immunology and Cell Biology. 94(1), 39–51.
mla: Sreeramkumar, Vinatha, et al. “Efficient T-Cell Priming and Activation Requires
Signaling through Prostaglandin E2 (EP) Receptors.” Immunology and Cell Biology,
vol. 94, no. 1, Nature Publishing Group, 2016, pp. 39–51, doi:10.1038/icb.2015.62.
short: V. Sreeramkumar, M. Hons, C. Punzón, J. Stein, D. Sancho, M. Fresno Forcelledo,
N. Cuesta, Immunology and Cell Biology 94 (2016) 39–51.
date_created: 2018-12-11T11:50:46Z
date_published: 2016-01-01T00:00:00Z
date_updated: 2025-09-22T09:34:26Z
day: '01'
department:
- _id: MiSi
doi: 10.1038/icb.2015.62
external_id:
isi:
- '000367628600005'
intvolume: ' 94'
isi: 1
issue: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: 39 - 51
publication: Immunology and Cell Biology
publication_status: published
publisher: Nature Publishing Group
publist_id: '6116'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Efficient T-cell priming and activation requires signaling through prostaglandin
E2 (EP) receptors
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 94
year: '2016'
...
---
_id: '1218'
abstract:
- lang: eng
text: Investigating the physiology of cyanobacteria cultured under a diel light
regime is relevant for a better understanding of the resulting growth characteristics
and for specific biotechnological applications that are foreseen for these photosynthetic
organisms. Here, we present the results of a multiomics study of the model cyanobacterium
Synechocystis sp. strain PCC 6803, cultured in a lab-scale photobioreactor in
physiological conditions relevant for large-scale culturing. The culture was sparged
withN2 andCO2, leading to an anoxic environment during the dark period. Growth
followed the availability of light. Metabolite analysis performed with 1Hnuclear
magnetic resonance analysis showed that amino acids involved in nitrogen and sulfur
assimilation showed elevated levels in the light. Most protein levels, analyzed
through mass spectrometry, remained rather stable. However, several high-light-response
proteins and stress-response proteins showed distinct changes at the onset of
the light period. Microarray-based transcript analysis found common patterns of~56%
of the transcriptome following the diel regime. These oscillating transcripts
could be grouped coarsely into genes that were upregulated and downregulated in
the dark period. The accumulated glycogen was degraded in the anaerobic environment
in the dark. A small part was degraded gradually, reflecting basic maintenance
requirements of the cells in darkness. Surprisingly, the largest part was degraded
rapidly in a short time span at the end of the dark period. This degradation could
allow rapid formation of metabolic intermediates at the end of the dark period,
preparing the cells for the resumption of growth at the start of the light period.
acknowledgement: "Dutch Ministry of Economic Affairs, Agriculture, and Innovation
through the program BioSolar CellsS. Andreas Angermayr,Pascal van Alphen, Klaas
J. Hellingwerf\r\nWe thank Naira Quintana (presently at Rousselot, Belgium) for
the ini-\r\ntiative at the 10th Cyanobacterial Molecular Biology Workshop\r\n(CMBW),
June 2010, Lake Arrowhead, Los Angeles, CA, USA, to start the\r\ncollaborative endeavor
reported here. We thank Timo Maarleveld from\r\nCWI/VU (Amsterdam) for a custom-made
Python script handling the output from the NMR analysis and for evaluating and visualizing
the\r\nseparate metabolites for their evaluation. We thank Rob Verpoorte from\r\nLeiden
University (metabolome analysis) and Hans Aerts from the AMC\r\n(proteome analysis)
for lab space and equipment. We thank Robert Leh-\r\nmann (Humboldt University Berlin)
and Ilka Axmann (University of\r\nDüsseldorf) for sharing the R-code for the LOS
transformation of the\r\ntranscript data. We thank Hans C. P. Matthijs from IBED
for inspiring\r\ndialogues and insightful thoughts on continuous culturing of cyanobac-\r\nteria.
We thank Sandra Waaijenborg for performing the transcript nor-\r\nmalization and
Johan Westerhuis from BDA, Jeroen van der Steen and\r\nFilipe Branco dos Santos
from MMP, and Lucas Stal from IBED/NIOZ for\r\nhelpful discussions. We thank Milou
Schuurmans from MMP for help\r\nwith sampling and glycogen determination. We thank
the members of the\r\nRNA Biology & Applied Bioinformatics group at SILS, in particular
Selina\r\nvan Leeuwen, Elisa Hoekstra, and Martijs Jonker, for the microarray anal-\r\nysis.
We thank the reviewers of this work for their insightful comments\r\nwhich improved
the quality of the manuscript. This work, including the efforts of S. Andreas Angermayr,
Pascal van\r\nAlphen, and Klaas J. Hellingwerf, was funded by Dutch Ministry of
Eco-\r\nnomic Affairs, Agriculture, and Innovation through the program BioSolar\r\nCells."
article_processing_charge: No
author:
- first_name: Andreas
full_name: Angermayr, Andreas
id: 4677C796-F248-11E8-B48F-1D18A9856A87
last_name: Angermayr
orcid: 0000-0001-8619-2223
- first_name: Pascal
full_name: Van Alphen, Pascal
last_name: Van Alphen
- first_name: Dicle
full_name: Hasdemir, Dicle
last_name: Hasdemir
- first_name: Gertjan
full_name: Kramer, Gertjan
last_name: Kramer
- first_name: Muzamal
full_name: Iqbal, Muzamal
last_name: Iqbal
- first_name: Wilmar
full_name: Van Grondelle, Wilmar
last_name: Van Grondelle
- first_name: Huub
full_name: Hoefsloot, Huub
last_name: Hoefsloot
- first_name: Younghae
full_name: Choi, Younghae
last_name: Choi
- first_name: Klaas
full_name: Hellingwerf, Klaas
last_name: Hellingwerf
citation:
ama: Angermayr A, Van Alphen P, Hasdemir D, et al. Culturing synechocystis sp. Strain
pcc 6803 with N2 and CO2 in a diel regime reveals multiphase glycogen dynamics
with low maintenance costs. Applied and Environmental Microbiology. 2016;82(14):4180-4189.
doi:10.1128/AEM.00256-16
apa: Angermayr, A., Van Alphen, P., Hasdemir, D., Kramer, G., Iqbal, M., Van Grondelle,
W., … Hellingwerf, K. (2016). Culturing synechocystis sp. Strain pcc 6803 with
N2 and CO2 in a diel regime reveals multiphase glycogen dynamics with low maintenance
costs. Applied and Environmental Microbiology. American Society for Microbiology.
https://doi.org/10.1128/AEM.00256-16
chicago: Angermayr, Andreas, Pascal Van Alphen, Dicle Hasdemir, Gertjan Kramer,
Muzamal Iqbal, Wilmar Van Grondelle, Huub Hoefsloot, Younghae Choi, and Klaas
Hellingwerf. “Culturing Synechocystis Sp. Strain Pcc 6803 with N2 and CO2 in a
Diel Regime Reveals Multiphase Glycogen Dynamics with Low Maintenance Costs.”
Applied and Environmental Microbiology. American Society for Microbiology,
2016. https://doi.org/10.1128/AEM.00256-16.
ieee: A. Angermayr et al., “Culturing synechocystis sp. Strain pcc 6803 with
N2 and CO2 in a diel regime reveals multiphase glycogen dynamics with low maintenance
costs,” Applied and Environmental Microbiology, vol. 82, no. 14. American
Society for Microbiology, pp. 4180–4189, 2016.
ista: Angermayr A, Van Alphen P, Hasdemir D, Kramer G, Iqbal M, Van Grondelle W,
Hoefsloot H, Choi Y, Hellingwerf K. 2016. Culturing synechocystis sp. Strain pcc
6803 with N2 and CO2 in a diel regime reveals multiphase glycogen dynamics with
low maintenance costs. Applied and Environmental Microbiology. 82(14), 4180–4189.
mla: Angermayr, Andreas, et al. “Culturing Synechocystis Sp. Strain Pcc 6803 with
N2 and CO2 in a Diel Regime Reveals Multiphase Glycogen Dynamics with Low Maintenance
Costs.” Applied and Environmental Microbiology, vol. 82, no. 14, American
Society for Microbiology, 2016, pp. 4180–89, doi:10.1128/AEM.00256-16.
short: A. Angermayr, P. Van Alphen, D. Hasdemir, G. Kramer, M. Iqbal, W. Van Grondelle,
H. Hoefsloot, Y. Choi, K. Hellingwerf, Applied and Environmental Microbiology
82 (2016) 4180–4189.
date_created: 2018-12-11T11:50:46Z
date_published: 2016-07-01T00:00:00Z
date_updated: 2025-09-22T09:35:22Z
day: '01'
department:
- _id: ToBo
doi: 10.1128/AEM.00256-16
external_id:
isi:
- '000379345100012'
intvolume: ' 82'
isi: 1
issue: '14'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4959195/
month: '07'
oa: 1
oa_version: Submitted Version
page: 4180 - 4189
publication: Applied and Environmental Microbiology
publication_status: published
publisher: American Society for Microbiology
publist_id: '6117'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Culturing synechocystis sp. Strain pcc 6803 with N2 and CO2 in a diel regime
reveals multiphase glycogen dynamics with low maintenance costs
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 82
year: '2016'
...
---
_id: '1219'
abstract:
- lang: eng
text: We consider N×N random matrices of the form H = W + V where W is a real symmetric
or complex Hermitian Wigner matrix and V is a random or deterministic, real, diagonal
matrix whose entries are independent of W. We assume subexponential decay for
the matrix entries of W, and we choose V so that the eigenvalues ofW and V are
typically of the same order. For a large class of diagonal matrices V , we show
that the local statistics in the bulk of the spectrum are universal in the limit
of large N.
acknowledgement: "J.C. was supported in part by National Research Foundation of Korea
Grant 2011-0013474 and TJ Park Junior Faculty Fellowship.\r\nK.S. was supported
by ERC Advanced Grant RANMAT, No. 338804, and the \"Fund for Math.\"\r\nB.S. was
supported by NSF GRFP Fellowship DGE-1144152.\r\nH.Y. was supported in part by NSF
Grant DMS-13-07444 and Simons investigator fellowship. We thank Paul Bourgade, László
Erd ̋os and Antti Knowles for helpful comments. We are grateful to the Taida Institute
for Mathematical\r\nSciences and National Taiwan Universality for their hospitality
during part of this\r\nresearch. We thank Thomas Spencer and the Institute for Advanced
Study for their\r\nhospitality during the academic year 2013–2014. "
article_processing_charge: No
arxiv: 1
author:
- first_name: Jioon
full_name: Lee, Jioon
last_name: Lee
- first_name: Kevin
full_name: Schnelli, Kevin
id: 434AD0AE-F248-11E8-B48F-1D18A9856A87
last_name: Schnelli
orcid: 0000-0003-0954-3231
- first_name: Ben
full_name: Stetler, Ben
last_name: Stetler
- first_name: Horngtzer
full_name: Yau, Horngtzer
last_name: Yau
citation:
ama: Lee J, Schnelli K, Stetler B, Yau H. Bulk universality for deformed wigner
matrices. Annals of Probability. 2016;44(3):2349-2425. doi:10.1214/15-AOP1023
apa: Lee, J., Schnelli, K., Stetler, B., & Yau, H. (2016). Bulk universality
for deformed wigner matrices. Annals of Probability. Institute of Mathematical
Statistics. https://doi.org/10.1214/15-AOP1023
chicago: Lee, Jioon, Kevin Schnelli, Ben Stetler, and Horngtzer Yau. “Bulk Universality
for Deformed Wigner Matrices.” Annals of Probability. Institute of Mathematical
Statistics, 2016. https://doi.org/10.1214/15-AOP1023.
ieee: J. Lee, K. Schnelli, B. Stetler, and H. Yau, “Bulk universality for deformed
wigner matrices,” Annals of Probability, vol. 44, no. 3. Institute of Mathematical
Statistics, pp. 2349–2425, 2016.
ista: Lee J, Schnelli K, Stetler B, Yau H. 2016. Bulk universality for deformed
wigner matrices. Annals of Probability. 44(3), 2349–2425.
mla: Lee, Jioon, et al. “Bulk Universality for Deformed Wigner Matrices.” Annals
of Probability, vol. 44, no. 3, Institute of Mathematical Statistics, 2016,
pp. 2349–425, doi:10.1214/15-AOP1023.
short: J. Lee, K. Schnelli, B. Stetler, H. Yau, Annals of Probability 44 (2016)
2349–2425.
date_created: 2018-12-11T11:50:47Z
date_published: 2016-01-01T00:00:00Z
date_updated: 2025-09-22T09:33:43Z
day: '01'
department:
- _id: LaEr
doi: 10.1214/15-AOP1023
ec_funded: 1
external_id:
arxiv:
- '1405.6634'
isi:
- '000376180700016'
intvolume: ' 44'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1405.6634
month: '01'
oa: 1
oa_version: Preprint
page: 2349 - 2425
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '338804'
name: Random matrices, universality and disordered quantum systems
publication: Annals of Probability
publication_status: published
publisher: Institute of Mathematical Statistics
publist_id: '6115'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Bulk universality for deformed wigner matrices
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 44
year: '2016'
...