---
OA_type: closed access
_id: '17968'
abstract:
- lang: eng
  text: While the electrical conductivity of bulk-scale group 14 materials such as
    diamond carbon, silicon, and germanium is well understood, there is a gap in knowledge
    regarding the conductivity of these materials at the nano and molecular scales.
    Filling this gap is important because integrated circuits have shrunk so far that
    their active regions, which rely so heavily on silicon and germanium, begin to
    resemble ornate molecules rather than extended solids. Here we unveil a new approach
    for synthesizing atomically discrete wires of germanium and present the first
    conductance measurements of molecular germanium using a scanning tunneling microscope-based
    break-junction (STM-BJ) technique. Our findings show that germanium and silicon
    wires are nearly identical in conductivity at the molecular scale, and that both
    are much more conductive than aliphatic carbon. We demonstrate that the strong
    donor ability of C–Ge σ-bonds can be used to raise the energy of the anchor lone
    pair and increase conductance. Furthermore, the oligogermane wires behave as conductance
    switches that function through stereoelectronic logic. These devices can be trained
    to operate with a higher switching factor by repeatedly compressing and elongating
    the molecular junction.
article_processing_charge: No
article_type: original
author:
- first_name: Timothy A.
  full_name: Su, Timothy A.
  last_name: Su
- first_name: Haixing
  full_name: Li, Haixing
  last_name: Li
- first_name: Vivian
  full_name: Zhang, Vivian
  last_name: Zhang
- first_name: Madhav
  full_name: Neupane, Madhav
  last_name: Neupane
- first_name: Arunabh
  full_name: Batra, Arunabh
  last_name: Batra
- first_name: Rebekka S.
  full_name: Klausen, Rebekka S.
  last_name: Klausen
- first_name: Bharat
  full_name: Kumar, Bharat
  last_name: Kumar
- first_name: Michael L.
  full_name: Steigerwald, Michael L.
  last_name: Steigerwald
- first_name: Latha
  full_name: Venkataraman, Latha
  id: 9ebb78a5-cc0d-11ee-8322-fae086a32caf
  last_name: Venkataraman
  orcid: 0000-0002-6957-6089
- first_name: Colin
  full_name: Nuckolls, Colin
  last_name: Nuckolls
citation:
  ama: Su TA, Li H, Zhang V, et al. Single-molecule conductance in atomically precise
    Germanium wires. <i>Journal of the American Chemical Society</i>. 2015;137(38):12400-12405.
    doi:<a href="https://doi.org/10.1021/jacs.5b08155">10.1021/jacs.5b08155</a>
  apa: Su, T. A., Li, H., Zhang, V., Neupane, M., Batra, A., Klausen, R. S., … Nuckolls,
    C. (2015). Single-molecule conductance in atomically precise Germanium wires.
    <i>Journal of the American Chemical Society</i>. American Chemical Society. <a
    href="https://doi.org/10.1021/jacs.5b08155">https://doi.org/10.1021/jacs.5b08155</a>
  chicago: Su, Timothy A., Haixing Li, Vivian Zhang, Madhav Neupane, Arunabh Batra,
    Rebekka S. Klausen, Bharat Kumar, Michael L. Steigerwald, Latha Venkataraman,
    and Colin Nuckolls. “Single-Molecule Conductance in Atomically Precise Germanium
    Wires.” <i>Journal of the American Chemical Society</i>. American Chemical Society,
    2015. <a href="https://doi.org/10.1021/jacs.5b08155">https://doi.org/10.1021/jacs.5b08155</a>.
  ieee: T. A. Su <i>et al.</i>, “Single-molecule conductance in atomically precise
    Germanium wires,” <i>Journal of the American Chemical Society</i>, vol. 137, no.
    38. American Chemical Society, pp. 12400–12405, 2015.
  ista: Su TA, Li H, Zhang V, Neupane M, Batra A, Klausen RS, Kumar B, Steigerwald
    ML, Venkataraman L, Nuckolls C. 2015. Single-molecule conductance in atomically
    precise Germanium wires. Journal of the American Chemical Society. 137(38), 12400–12405.
  mla: Su, Timothy A., et al. “Single-Molecule Conductance in Atomically Precise Germanium
    Wires.” <i>Journal of the American Chemical Society</i>, vol. 137, no. 38, American
    Chemical Society, 2015, pp. 12400–05, doi:<a href="https://doi.org/10.1021/jacs.5b08155">10.1021/jacs.5b08155</a>.
  short: T.A. Su, H. Li, V. Zhang, M. Neupane, A. Batra, R.S. Klausen, B. Kumar, M.L.
    Steigerwald, L. Venkataraman, C. Nuckolls, Journal of the American Chemical Society
    137 (2015) 12400–12405.
date_created: 2024-09-09T09:43:25Z
date_published: 2015-09-16T00:00:00Z
date_updated: 2024-12-18T11:24:37Z
day: '16'
doi: 10.1021/jacs.5b08155
extern: '1'
external_id:
  pmid:
  - '26373928'
intvolume: '       137'
issue: '38'
language:
- iso: eng
month: '09'
oa_version: None
page: 12400-12405
pmid: 1
publication: Journal of the American Chemical Society
publication_identifier:
  eissn:
  - 1520-5126
  issn:
  - 0002-7863
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Single-molecule conductance in atomically precise Germanium wires
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 137
year: '2015'
...
---
OA_place: repository
OA_type: green
_id: '17969'
abstract:
- lang: eng
  text: Recent experiments have shown that transport properties of molecular-scale
    devices can be reversibly altered by the surrounding solvent. Here, we use a combination
    of first-principles calculations and experiment to explain this change in transport
    properties through a shift in the local electrostatic potential at the junction
    caused by nearby conducting and solvent molecules chemically bound to the electrodes.
    This effect is found to alter the conductance of 4,4′-bipyridine-gold junctions
    by more than 50%. Moreover, we develop a general electrostatic model that quantitatively
    relates the conductance and dipoles associated with the bound solvent and conducting
    molecules. Our work shows that solvent-induced effects can be used to control
    charge and energy transport at molecular-scale interfaces.
article_processing_charge: No
article_type: letter_note
arxiv: 1
author:
- first_name: Michele
  full_name: Kotiuga, Michele
  last_name: Kotiuga
- first_name: Pierre
  full_name: Darancet, Pierre
  last_name: Darancet
- first_name: Carlos R.
  full_name: Arroyo, Carlos R.
  last_name: Arroyo
- first_name: Latha
  full_name: Venkataraman, Latha
  id: 9ebb78a5-cc0d-11ee-8322-fae086a32caf
  last_name: Venkataraman
  orcid: 0000-0002-6957-6089
- first_name: Jeffrey B.
  full_name: Neaton, Jeffrey B.
  last_name: Neaton
citation:
  ama: Kotiuga M, Darancet P, Arroyo CR, Venkataraman L, Neaton JB. Adsorption-induced
    solvent-based electrostatic gating of charge transport through molecular junctions.
    <i>Nano Letters</i>. 2015;15(7):4498-4503. doi:<a href="https://doi.org/10.1021/acs.nanolett.5b00990">10.1021/acs.nanolett.5b00990</a>
  apa: Kotiuga, M., Darancet, P., Arroyo, C. R., Venkataraman, L., &#38; Neaton, J.
    B. (2015). Adsorption-induced solvent-based electrostatic gating of charge transport
    through molecular junctions. <i>Nano Letters</i>. American Chemical Society. <a
    href="https://doi.org/10.1021/acs.nanolett.5b00990">https://doi.org/10.1021/acs.nanolett.5b00990</a>
  chicago: Kotiuga, Michele, Pierre Darancet, Carlos R. Arroyo, Latha Venkataraman,
    and Jeffrey B. Neaton. “Adsorption-Induced Solvent-Based Electrostatic Gating
    of Charge Transport through Molecular Junctions.” <i>Nano Letters</i>. American
    Chemical Society, 2015. <a href="https://doi.org/10.1021/acs.nanolett.5b00990">https://doi.org/10.1021/acs.nanolett.5b00990</a>.
  ieee: M. Kotiuga, P. Darancet, C. R. Arroyo, L. Venkataraman, and J. B. Neaton,
    “Adsorption-induced solvent-based electrostatic gating of charge transport through
    molecular junctions,” <i>Nano Letters</i>, vol. 15, no. 7. American Chemical Society,
    pp. 4498–4503, 2015.
  ista: Kotiuga M, Darancet P, Arroyo CR, Venkataraman L, Neaton JB. 2015. Adsorption-induced
    solvent-based electrostatic gating of charge transport through molecular junctions.
    Nano Letters. 15(7), 4498–4503.
  mla: Kotiuga, Michele, et al. “Adsorption-Induced Solvent-Based Electrostatic Gating
    of Charge Transport through Molecular Junctions.” <i>Nano Letters</i>, vol. 15,
    no. 7, American Chemical Society, 2015, pp. 4498–503, doi:<a href="https://doi.org/10.1021/acs.nanolett.5b00990">10.1021/acs.nanolett.5b00990</a>.
  short: M. Kotiuga, P. Darancet, C.R. Arroyo, L. Venkataraman, J.B. Neaton, Nano
    Letters 15 (2015) 4498–4503.
date_created: 2024-09-09T09:44:13Z
date_published: 2015-06-12T00:00:00Z
date_updated: 2024-12-18T11:28:49Z
day: '12'
doi: 10.1021/acs.nanolett.5b00990
extern: '1'
external_id:
  arxiv:
  - '1410.1439'
intvolume: '        15'
issue: '7'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.1410.1439
month: '06'
oa: 1
oa_version: Preprint
page: 4498-4503
publication: Nano Letters
publication_identifier:
  eissn:
  - 1530-6992
  issn:
  - 1530-6984
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Adsorption-induced solvent-based electrostatic gating of charge transport through
  molecular junctions
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 15
year: '2015'
...
---
OA_type: closed access
_id: '17970'
abstract:
- lang: eng
  text: Charge transport properties of metal–molecule interfaces depend strongly on
    the character of molecule–electrode interactions. Although through-bond coupled
    systems have attracted the most attention, through-space coupling is important
    in molecular systems when, for example, through-bond coupling is suppressed due
    to quantum interference effects. To date, a probe that clearly distinguishes these
    two types of coupling has not yet been demonstrated. Here, we investigate the
    origin of flicker noise in single molecule junctions and demonstrate how the character
    of the molecule–electrode coupling influences the flicker noise behavior of single
    molecule junctions. Importantly, we find that flicker noise shows a power law
    dependence on conductance in all junctions studied with an exponent that can distinguish
    through-space and through-bond coupling. Our results provide a new and powerful
    tool for probing and understanding coupling at the metal-molecule interface.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Olgun
  full_name: Adak, Olgun
  last_name: Adak
- first_name: Ethan
  full_name: Rosenthal, Ethan
  last_name: Rosenthal
- first_name: Jeffery
  full_name: Meisner, Jeffery
  last_name: Meisner
- first_name: Erick F.
  full_name: Andrade, Erick F.
  last_name: Andrade
- first_name: Abhay N.
  full_name: Pasupathy, Abhay N.
  last_name: Pasupathy
- first_name: Colin
  full_name: Nuckolls, Colin
  last_name: Nuckolls
- first_name: Mark S.
  full_name: Hybertsen, Mark S.
  last_name: Hybertsen
- first_name: Latha
  full_name: Venkataraman, Latha
  id: 9ebb78a5-cc0d-11ee-8322-fae086a32caf
  last_name: Venkataraman
  orcid: 0000-0002-6957-6089
citation:
  ama: Adak O, Rosenthal E, Meisner J, et al. Flicker noise as a probe of electronic
    interaction at metal–single molecule interfaces. <i>Nano Letters</i>. 2015;15(6):4143-4149.
    doi:<a href="https://doi.org/10.1021/acs.nanolett.5b01270">10.1021/acs.nanolett.5b01270</a>
  apa: Adak, O., Rosenthal, E., Meisner, J., Andrade, E. F., Pasupathy, A. N., Nuckolls,
    C., … Venkataraman, L. (2015). Flicker noise as a probe of electronic interaction
    at metal–single molecule interfaces. <i>Nano Letters</i>. American Chemical Society.
    <a href="https://doi.org/10.1021/acs.nanolett.5b01270">https://doi.org/10.1021/acs.nanolett.5b01270</a>
  chicago: Adak, Olgun, Ethan Rosenthal, Jeffery Meisner, Erick F. Andrade, Abhay
    N. Pasupathy, Colin Nuckolls, Mark S. Hybertsen, and Latha Venkataraman. “Flicker
    Noise as a Probe of Electronic Interaction at Metal–Single Molecule Interfaces.”
    <i>Nano Letters</i>. American Chemical Society, 2015. <a href="https://doi.org/10.1021/acs.nanolett.5b01270">https://doi.org/10.1021/acs.nanolett.5b01270</a>.
  ieee: O. Adak <i>et al.</i>, “Flicker noise as a probe of electronic interaction
    at metal–single molecule interfaces,” <i>Nano Letters</i>, vol. 15, no. 6. American
    Chemical Society, pp. 4143–4149, 2015.
  ista: Adak O, Rosenthal E, Meisner J, Andrade EF, Pasupathy AN, Nuckolls C, Hybertsen
    MS, Venkataraman L. 2015. Flicker noise as a probe of electronic interaction at
    metal–single molecule interfaces. Nano Letters. 15(6), 4143–4149.
  mla: Adak, Olgun, et al. “Flicker Noise as a Probe of Electronic Interaction at
    Metal–Single Molecule Interfaces.” <i>Nano Letters</i>, vol. 15, no. 6, American
    Chemical Society, 2015, pp. 4143–49, doi:<a href="https://doi.org/10.1021/acs.nanolett.5b01270">10.1021/acs.nanolett.5b01270</a>.
  short: O. Adak, E. Rosenthal, J. Meisner, E.F. Andrade, A.N. Pasupathy, C. Nuckolls,
    M.S. Hybertsen, L. Venkataraman, Nano Letters 15 (2015) 4143–4149.
date_created: 2024-09-09T09:45:50Z
date_published: 2015-05-05T00:00:00Z
date_updated: 2024-12-18T11:32:55Z
day: '05'
doi: 10.1021/acs.nanolett.5b01270
extern: '1'
external_id:
  pmid:
  - '25942441'
intvolume: '        15'
issue: '6'
language:
- iso: eng
month: '05'
oa_version: None
page: 4143-4149
pmid: 1
publication: Nano Letters
publication_identifier:
  eissn:
  - 1530-6992
  issn:
  - 1530-6984
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Flicker noise as a probe of electronic interaction at metal–single molecule
  interfaces
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 15
year: '2015'
...
---
OA_place: repository
OA_type: green
_id: '17971'
abstract:
- lang: eng
  text: We study the impact of electrode band structure on transport through single-molecule
    junctions by measuring the conductance of pyridine-based molecules using Ag and
    Au electrodes. Our experiments are carried out using the scanning tunneling microscope
    based break-junction technique and are supported by density functional theory
    based calculations. We find from both experiments and calculations that the coupling
    of the dominant transport orbital to the metal is stronger for Au-based junctions
    when compared with Ag-based junctions. We attribute this difference to relativistic
    effects, which result in an enhanced density of d-states at the Fermi energy for
    Au compared with Ag. We further show that the alignment of the conducting orbital
    relative to the Fermi level does not follow the work function difference between
    two metals and is different for conjugated and saturated systems. We thus demonstrate
    that the details of the molecular level alignment and electronic coupling in metal–organic
    interfaces do not follow simple rules but are rather the consequence of subtle
    local interactions.
article_processing_charge: No
article_type: letter_note
arxiv: 1
author:
- first_name: Olgun
  full_name: Adak, Olgun
  last_name: Adak
- first_name: Richard
  full_name: Korytár, Richard
  last_name: Korytár
- first_name: Andrew Y.
  full_name: Joe, Andrew Y.
  last_name: Joe
- first_name: Ferdinand
  full_name: Evers, Ferdinand
  last_name: Evers
- first_name: Latha
  full_name: Venkataraman, Latha
  id: 9ebb78a5-cc0d-11ee-8322-fae086a32caf
  last_name: Venkataraman
  orcid: 0000-0002-6957-6089
citation:
  ama: Adak O, Korytár R, Joe AY, Evers F, Venkataraman L. Impact of electrode density
    of states on transport through pyridine-linked single molecule junctions. <i>Nano
    Letters</i>. 2015;15(6):3716-3722. doi:<a href="https://doi.org/10.1021/acs.nanolett.5b01195">10.1021/acs.nanolett.5b01195</a>
  apa: Adak, O., Korytár, R., Joe, A. Y., Evers, F., &#38; Venkataraman, L. (2015).
    Impact of electrode density of states on transport through pyridine-linked single
    molecule junctions. <i>Nano Letters</i>. American Chemical Society. <a href="https://doi.org/10.1021/acs.nanolett.5b01195">https://doi.org/10.1021/acs.nanolett.5b01195</a>
  chicago: Adak, Olgun, Richard Korytár, Andrew Y. Joe, Ferdinand Evers, and Latha
    Venkataraman. “Impact of Electrode Density of States on Transport through Pyridine-Linked
    Single Molecule Junctions.” <i>Nano Letters</i>. American Chemical Society, 2015.
    <a href="https://doi.org/10.1021/acs.nanolett.5b01195">https://doi.org/10.1021/acs.nanolett.5b01195</a>.
  ieee: O. Adak, R. Korytár, A. Y. Joe, F. Evers, and L. Venkataraman, “Impact of
    electrode density of states on transport through pyridine-linked single molecule
    junctions,” <i>Nano Letters</i>, vol. 15, no. 6. American Chemical Society, pp.
    3716–3722, 2015.
  ista: Adak O, Korytár R, Joe AY, Evers F, Venkataraman L. 2015. Impact of electrode
    density of states on transport through pyridine-linked single molecule junctions.
    Nano Letters. 15(6), 3716–3722.
  mla: Adak, Olgun, et al. “Impact of Electrode Density of States on Transport through
    Pyridine-Linked Single Molecule Junctions.” <i>Nano Letters</i>, vol. 15, no.
    6, American Chemical Society, 2015, pp. 3716–22, doi:<a href="https://doi.org/10.1021/acs.nanolett.5b01195">10.1021/acs.nanolett.5b01195</a>.
  short: O. Adak, R. Korytár, A.Y. Joe, F. Evers, L. Venkataraman, Nano Letters 15
    (2015) 3716–3722.
date_created: 2024-09-09T10:02:07Z
date_published: 2015-05-28T00:00:00Z
date_updated: 2024-12-18T11:37:35Z
day: '28'
doi: 10.1021/acs.nanolett.5b01195
extern: '1'
external_id:
  arxiv:
  - '1504.00242'
intvolume: '        15'
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1504.00242
month: '05'
oa: 1
oa_version: Preprint
page: 3716-3722
publication: Nano Letters
publication_identifier:
  eissn:
  - 1530-6992
  issn:
  - 1530-6984
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Impact of electrode density of states on transport through pyridine-linked
  single molecule junctions
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 15
year: '2015'
...
---
OA_type: closed access
_id: '17972'
abstract:
- lang: eng
  text: Molecular electronics aims to miniaturize electronic devices by using subnanometre-scale
    active components1,2,3. A single-molecule diode, a circuit element that directs
    current flow4, was first proposed more than 40 years ago5 and consisted of an
    asymmetric molecule comprising a donor–bridge–acceptor architecture to mimic a
    semiconductor p–n junction. Several single-molecule diodes have since been realized
    in junctions featuring asymmetric molecular backbones6,7,8, molecule–electrode
    linkers9 or electrode materials10. Despite these advances, molecular diodes have
    had limited potential for applications due to their low conductance, low rectification
    ratios, extreme sensitivity to the junction structure and high operating voltages7,8,9,11,12.
    Here, we demonstrate a powerful approach to induce current rectification in symmetric
    single-molecule junctions using two electrodes of the same metal, but breaking
    symmetry by exposing considerably different electrode areas to an ionic solution.
    This allows us to control the junction's electrostatic environment in an asymmetric
    fashion by simply changing the bias polarity. With this method, we reliably and
    reproducibly achieve rectification ratios in excess of 200 at voltages as low
    as 370 mV using a symmetric oligomer of thiophene-1,1-dioxide13,14. By taking
    advantage of the changes in the junction environment induced by the presence of
    an ionic solution, this method provides a general route for tuning nonlinear nanoscale
    device phenomena, which could potentially be applied in systems beyond single-molecule
    junctions.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Brian
  full_name: Capozzi, Brian
  last_name: Capozzi
- first_name: Jianlong
  full_name: Xia, Jianlong
  last_name: Xia
- first_name: Olgun
  full_name: Adak, Olgun
  last_name: Adak
- first_name: Emma J.
  full_name: Dell, Emma J.
  last_name: Dell
- first_name: Zhen-Fei
  full_name: Liu, Zhen-Fei
  last_name: Liu
- first_name: Jeffrey C.
  full_name: Taylor, Jeffrey C.
  last_name: Taylor
- first_name: Jeffrey B.
  full_name: Neaton, Jeffrey B.
  last_name: Neaton
- first_name: Luis M.
  full_name: Campos, Luis M.
  last_name: Campos
- first_name: Latha
  full_name: Venkataraman, Latha
  id: 9ebb78a5-cc0d-11ee-8322-fae086a32caf
  last_name: Venkataraman
  orcid: 0000-0002-6957-6089
citation:
  ama: Capozzi B, Xia J, Adak O, et al. Single-molecule diodes with high rectification
    ratios through environmental control. <i>Nature Nanotechnology</i>. 2015;10(6):522-527.
    doi:<a href="https://doi.org/10.1038/nnano.2015.97">10.1038/nnano.2015.97</a>
  apa: Capozzi, B., Xia, J., Adak, O., Dell, E. J., Liu, Z.-F., Taylor, J. C., … Venkataraman,
    L. (2015). Single-molecule diodes with high rectification ratios through environmental
    control. <i>Nature Nanotechnology</i>. Springer Nature. <a href="https://doi.org/10.1038/nnano.2015.97">https://doi.org/10.1038/nnano.2015.97</a>
  chicago: Capozzi, Brian, Jianlong Xia, Olgun Adak, Emma J. Dell, Zhen-Fei Liu, Jeffrey
    C. Taylor, Jeffrey B. Neaton, Luis M. Campos, and Latha Venkataraman. “Single-Molecule
    Diodes with High Rectification Ratios through Environmental Control.” <i>Nature
    Nanotechnology</i>. Springer Nature, 2015. <a href="https://doi.org/10.1038/nnano.2015.97">https://doi.org/10.1038/nnano.2015.97</a>.
  ieee: B. Capozzi <i>et al.</i>, “Single-molecule diodes with high rectification
    ratios through environmental control,” <i>Nature Nanotechnology</i>, vol. 10,
    no. 6. Springer Nature, pp. 522–527, 2015.
  ista: Capozzi B, Xia J, Adak O, Dell EJ, Liu Z-F, Taylor JC, Neaton JB, Campos LM,
    Venkataraman L. 2015. Single-molecule diodes with high rectification ratios through
    environmental control. Nature Nanotechnology. 10(6), 522–527.
  mla: Capozzi, Brian, et al. “Single-Molecule Diodes with High Rectification Ratios
    through Environmental Control.” <i>Nature Nanotechnology</i>, vol. 10, no. 6,
    Springer Nature, 2015, pp. 522–27, doi:<a href="https://doi.org/10.1038/nnano.2015.97">10.1038/nnano.2015.97</a>.
  short: B. Capozzi, J. Xia, O. Adak, E.J. Dell, Z.-F. Liu, J.C. Taylor, J.B. Neaton,
    L.M. Campos, L. Venkataraman, Nature Nanotechnology 10 (2015) 522–527.
date_created: 2024-09-09T10:03:23Z
date_published: 2015-06-01T00:00:00Z
date_updated: 2024-12-18T12:03:16Z
day: '01'
doi: 10.1038/nnano.2015.97
extern: '1'
external_id:
  pmid:
  - '26005998'
intvolume: '        10'
issue: '6'
language:
- iso: eng
month: '06'
oa_version: None
page: 522-527
pmid: 1
publication: Nature Nanotechnology
publication_identifier:
  eissn:
  - 1748-3395
  issn:
  - 1748-3387
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Single-molecule diodes with high rectification ratios through environmental
  control
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 10
year: '2015'
...
---
OA_type: closed access
_id: '17973'
abstract:
- lang: eng
  text: Here we study the stability and rupture of molecular junctions under high
    voltage bias at the single molecule/single bond level using the scanning tunneling
    microscope-based break-junction technique. We synthesize carbon-, silicon-, and
    germanium-based molecular wires terminated by aurophilic linker groups and study
    how the molecular backbone and linker group affect the probability of voltage-induced
    junction rupture. First, we find that junctions formed with covalent S–Au bonds
    are robust under high voltage and their rupture does not demonstrate bias dependence
    within our bias range. In contrast, junctions formed through donor–acceptor bonds
    rupture more frequently, and their rupture probability demonstrates a strong bias
    dependence. Moreover, we find that the junction rupture probability increases
    significantly above ∼1 V in junctions formed from methylthiol-terminated disilanes
    and digermanes, indicating a voltage-induced rupture of individual Si–Si and Ge–Ge
    bonds. Finally, we compare the rupture probabilities of the thiol-terminated silane
    derivatives containing Si–Si, Si–C, and Si–O bonds and find that Si–C backbones
    have higher probabilities of sustaining the highest voltage. These results establish
    a new method for studying electric field breakdown phenomena at the single molecule
    level.
article_processing_charge: No
article_type: original
author:
- first_name: Haixing
  full_name: Li, Haixing
  last_name: Li
- first_name: Timothy A.
  full_name: Su, Timothy A.
  last_name: Su
- first_name: Vivian
  full_name: Zhang, Vivian
  last_name: Zhang
- first_name: Michael L.
  full_name: Steigerwald, Michael L.
  last_name: Steigerwald
- first_name: Colin
  full_name: Nuckolls, Colin
  last_name: Nuckolls
- first_name: Latha
  full_name: Venkataraman, Latha
  id: 9ebb78a5-cc0d-11ee-8322-fae086a32caf
  last_name: Venkataraman
  orcid: 0000-0002-6957-6089
citation:
  ama: Li H, Su TA, Zhang V, Steigerwald ML, Nuckolls C, Venkataraman L. Electric
    field breakdown in single molecule junctions. <i>Journal of the American Chemical
    Society</i>. 2015;137(15):5028-5033. doi:<a href="https://doi.org/10.1021/ja512523r">10.1021/ja512523r</a>
  apa: Li, H., Su, T. A., Zhang, V., Steigerwald, M. L., Nuckolls, C., &#38; Venkataraman,
    L. (2015). Electric field breakdown in single molecule junctions. <i>Journal of
    the American Chemical Society</i>. American Chemical Society. <a href="https://doi.org/10.1021/ja512523r">https://doi.org/10.1021/ja512523r</a>
  chicago: Li, Haixing, Timothy A. Su, Vivian Zhang, Michael L. Steigerwald, Colin
    Nuckolls, and Latha Venkataraman. “Electric Field Breakdown in Single Molecule
    Junctions.” <i>Journal of the American Chemical Society</i>. American Chemical
    Society, 2015. <a href="https://doi.org/10.1021/ja512523r">https://doi.org/10.1021/ja512523r</a>.
  ieee: H. Li, T. A. Su, V. Zhang, M. L. Steigerwald, C. Nuckolls, and L. Venkataraman,
    “Electric field breakdown in single molecule junctions,” <i>Journal of the American
    Chemical Society</i>, vol. 137, no. 15. American Chemical Society, pp. 5028–5033,
    2015.
  ista: Li H, Su TA, Zhang V, Steigerwald ML, Nuckolls C, Venkataraman L. 2015. Electric
    field breakdown in single molecule junctions. Journal of the American Chemical
    Society. 137(15), 5028–5033.
  mla: Li, Haixing, et al. “Electric Field Breakdown in Single Molecule Junctions.”
    <i>Journal of the American Chemical Society</i>, vol. 137, no. 15, American Chemical
    Society, 2015, pp. 5028–33, doi:<a href="https://doi.org/10.1021/ja512523r">10.1021/ja512523r</a>.
  short: H. Li, T.A. Su, V. Zhang, M.L. Steigerwald, C. Nuckolls, L. Venkataraman,
    Journal of the American Chemical Society 137 (2015) 5028–5033.
date_created: 2024-09-09T10:04:02Z
date_published: 2015-02-12T00:00:00Z
date_updated: 2024-12-18T12:10:06Z
day: '12'
doi: 10.1021/ja512523r
extern: '1'
external_id:
  pmid:
  - '25675085'
intvolume: '       137'
issue: '15'
language:
- iso: eng
month: '02'
oa_version: None
page: 5028-5033
pmid: 1
publication: Journal of the American Chemical Society
publication_identifier:
  eissn:
  - 1520-5126
  issn:
  - 0002-7863
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Electric field breakdown in single molecule junctions
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 137
year: '2015'
...
---
OA_type: closed access
_id: '17974'
abstract:
- lang: eng
  text: Guest editors Dirk M. Guldi, Hiroshi Nishihara and Latha Venkataraman introduce
    the Molecular Wires issue of "Chemical Society Reviews".
article_processing_charge: No
article_type: letter_note
author:
- first_name: Dirk M.
  full_name: Guldi, Dirk M.
  last_name: Guldi
- first_name: Hiroshi
  full_name: Nishihara, Hiroshi
  last_name: Nishihara
- first_name: Latha
  full_name: Venkataraman, Latha
  id: 9ebb78a5-cc0d-11ee-8322-fae086a32caf
  last_name: Venkataraman
  orcid: 0000-0002-6957-6089
citation:
  ama: Guldi DM, Nishihara H, Venkataraman L. Molecular wires. <i>Chemical Society
    Reviews</i>. 2015;44(4):842-844. doi:<a href="https://doi.org/10.1039/c5cs90010g">10.1039/c5cs90010g</a>
  apa: Guldi, D. M., Nishihara, H., &#38; Venkataraman, L. (2015). Molecular wires.
    <i>Chemical Society Reviews</i>. Royal Society of Chemistry. <a href="https://doi.org/10.1039/c5cs90010g">https://doi.org/10.1039/c5cs90010g</a>
  chicago: Guldi, Dirk M., Hiroshi Nishihara, and Latha Venkataraman. “Molecular Wires.”
    <i>Chemical Society Reviews</i>. Royal Society of Chemistry, 2015. <a href="https://doi.org/10.1039/c5cs90010g">https://doi.org/10.1039/c5cs90010g</a>.
  ieee: D. M. Guldi, H. Nishihara, and L. Venkataraman, “Molecular wires,” <i>Chemical
    Society Reviews</i>, vol. 44, no. 4. Royal Society of Chemistry, pp. 842–844,
    2015.
  ista: Guldi DM, Nishihara H, Venkataraman L. 2015. Molecular wires. Chemical Society
    Reviews. 44(4), 842–844.
  mla: Guldi, Dirk M., et al. “Molecular Wires.” <i>Chemical Society Reviews</i>,
    vol. 44, no. 4, Royal Society of Chemistry, 2015, pp. 842–44, doi:<a href="https://doi.org/10.1039/c5cs90010g">10.1039/c5cs90010g</a>.
  short: D.M. Guldi, H. Nishihara, L. Venkataraman, Chemical Society Reviews 44 (2015)
    842–844.
date_created: 2024-09-09T10:53:55Z
date_published: 2015-01-30T00:00:00Z
date_updated: 2025-01-02T13:26:36Z
day: '30'
doi: 10.1039/c5cs90010g
extern: '1'
external_id:
  pmid:
  - '25636152'
intvolume: '        44'
issue: '4'
language:
- iso: eng
month: '01'
oa_version: None
page: 842-844
pmid: 1
publication: Chemical Society Reviews
publication_identifier:
  eissn:
  - 1460-4744
  issn:
  - 0306-0012
publication_status: published
publisher: Royal Society of Chemistry
quality_controlled: '1'
scopus_import: '1'
status: public
title: Molecular wires
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 44
year: '2015'
...
---
OA_type: closed access
_id: '17975'
abstract:
- lang: eng
  text: A new intersection between reaction chemistry and electronic circuitry is
    emerging from the ultraminiaturization of electronic devices. Over decades chemists
    have developed a nuanced understanding of stereoelectronics to establish how the
    electronic properties of molecules relate to their conformation; the recent advent
    of single-molecule break-junction techniques provides the means to alter this
    conformation with a level of control previously unimagined. Here we unite these
    ideas by demonstrating the first single-molecule switch that operates through
    a stereoelectronic effect. We demonstrate this behaviour in permethyloligosilanes
    with methylthiomethyl electrode linkers. The strong σ conjugation in the oligosilane
    backbone couples the stereoelectronic properties of the sulfur–methylene σ bonds
    that terminate the molecule. Theoretical calculations support the existence of
    three distinct dihedral conformations that differ drastically in their electronic
    character. We can shift between these three species by simply lengthening or compressing
    the molecular junction, and, in doing so, we can switch conductance digitally
    between two states.
article_processing_charge: No
article_type: original
author:
- first_name: Timothy A.
  full_name: Su, Timothy A.
  last_name: Su
- first_name: Haixing
  full_name: Li, Haixing
  last_name: Li
- first_name: Michael L.
  full_name: Steigerwald, Michael L.
  last_name: Steigerwald
- first_name: Latha
  full_name: Venkataraman, Latha
  id: 9ebb78a5-cc0d-11ee-8322-fae086a32caf
  last_name: Venkataraman
  orcid: 0000-0002-6957-6089
- first_name: Colin
  full_name: Nuckolls, Colin
  last_name: Nuckolls
citation:
  ama: Su TA, Li H, Steigerwald ML, Venkataraman L, Nuckolls C. Stereoelectronic switching
    in single-molecule junctions. <i>Nature Chemistry</i>. 2015;7(3):215-220. doi:<a
    href="https://doi.org/10.1038/nchem.2180">10.1038/nchem.2180</a>
  apa: Su, T. A., Li, H., Steigerwald, M. L., Venkataraman, L., &#38; Nuckolls, C.
    (2015). Stereoelectronic switching in single-molecule junctions. <i>Nature Chemistry</i>.
    Springer Nature. <a href="https://doi.org/10.1038/nchem.2180">https://doi.org/10.1038/nchem.2180</a>
  chicago: Su, Timothy A., Haixing Li, Michael L. Steigerwald, Latha Venkataraman,
    and Colin Nuckolls. “Stereoelectronic Switching in Single-Molecule Junctions.”
    <i>Nature Chemistry</i>. Springer Nature, 2015. <a href="https://doi.org/10.1038/nchem.2180">https://doi.org/10.1038/nchem.2180</a>.
  ieee: T. A. Su, H. Li, M. L. Steigerwald, L. Venkataraman, and C. Nuckolls, “Stereoelectronic
    switching in single-molecule junctions,” <i>Nature Chemistry</i>, vol. 7, no.
    3. Springer Nature, pp. 215–220, 2015.
  ista: Su TA, Li H, Steigerwald ML, Venkataraman L, Nuckolls C. 2015. Stereoelectronic
    switching in single-molecule junctions. Nature Chemistry. 7(3), 215–220.
  mla: Su, Timothy A., et al. “Stereoelectronic Switching in Single-Molecule Junctions.”
    <i>Nature Chemistry</i>, vol. 7, no. 3, Springer Nature, 2015, pp. 215–20, doi:<a
    href="https://doi.org/10.1038/nchem.2180">10.1038/nchem.2180</a>.
  short: T.A. Su, H. Li, M.L. Steigerwald, L. Venkataraman, C. Nuckolls, Nature Chemistry
    7 (2015) 215–220.
date_created: 2024-09-09T10:54:59Z
date_published: 2015-02-16T00:00:00Z
date_updated: 2025-01-02T13:28:51Z
day: '16'
doi: 10.1038/nchem.2180
extern: '1'
external_id:
  pmid:
  - '25698330'
intvolume: '         7'
issue: '3'
language:
- iso: eng
month: '02'
oa_version: None
page: 215-220
pmid: 1
publication: Nature Chemistry
publication_identifier:
  eissn:
  - 1755-4349
  issn:
  - 1755-4330
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Stereoelectronic switching in single-molecule junctions
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2015'
...
---
OA_type: closed access
_id: '17976'
abstract:
- lang: eng
  text: To develop advanced materials for electronic devices, it is of utmost importance
    to design organic building blocks with tunable functionality and to study their
    properties at the molecular level. For organic electronic and photovoltaic applications,
    the ability to vary the nature of charge carriers and so create either electron
    donors or acceptors is critical. Here we demonstrate that charge carriers in single-molecule
    junctions can be tuned within a family of molecules that contain electron-deficient
    thiophene-1,1-dioxide (TDO) building blocks. Oligomers of TDO were designed to
    increase electron affinity and maintain delocalized frontier orbitals while significantly
    decreasing the transport gap. Through thermopower measurements we show that the
    dominant charge carriers change from holes to electrons as the number of TDO units
    is increased. This results in a unique system in which the charge carrier depends
    on the backbone length, and provides a new means to tune p- and n-type transport
    in organic materials.
article_processing_charge: No
article_type: original
author:
- first_name: Emma J.
  full_name: Dell, Emma J.
  last_name: Dell
- first_name: Brian
  full_name: Capozzi, Brian
  last_name: Capozzi
- first_name: Jianlong
  full_name: Xia, Jianlong
  last_name: Xia
- first_name: Latha
  full_name: Venkataraman, Latha
  id: 9ebb78a5-cc0d-11ee-8322-fae086a32caf
  last_name: Venkataraman
  orcid: 0000-0002-6957-6089
- first_name: Luis M.
  full_name: Campos, Luis M.
  last_name: Campos
citation:
  ama: Dell EJ, Capozzi B, Xia J, Venkataraman L, Campos LM. Molecular length dictates
    the nature of charge carriers in single-molecule junctions of oxidized oligothiophenes.
    <i>Nature Chemistry</i>. 2015;7(3):209-214. doi:<a href="https://doi.org/10.1038/nchem.2160">10.1038/nchem.2160</a>
  apa: Dell, E. J., Capozzi, B., Xia, J., Venkataraman, L., &#38; Campos, L. M. (2015).
    Molecular length dictates the nature of charge carriers in single-molecule junctions
    of oxidized oligothiophenes. <i>Nature Chemistry</i>. Springer Nature. <a href="https://doi.org/10.1038/nchem.2160">https://doi.org/10.1038/nchem.2160</a>
  chicago: Dell, Emma J., Brian Capozzi, Jianlong Xia, Latha Venkataraman, and Luis
    M. Campos. “Molecular Length Dictates the Nature of Charge Carriers in Single-Molecule
    Junctions of Oxidized Oligothiophenes.” <i>Nature Chemistry</i>. Springer Nature,
    2015. <a href="https://doi.org/10.1038/nchem.2160">https://doi.org/10.1038/nchem.2160</a>.
  ieee: E. J. Dell, B. Capozzi, J. Xia, L. Venkataraman, and L. M. Campos, “Molecular
    length dictates the nature of charge carriers in single-molecule junctions of
    oxidized oligothiophenes,” <i>Nature Chemistry</i>, vol. 7, no. 3. Springer Nature,
    pp. 209–214, 2015.
  ista: Dell EJ, Capozzi B, Xia J, Venkataraman L, Campos LM. 2015. Molecular length
    dictates the nature of charge carriers in single-molecule junctions of oxidized
    oligothiophenes. Nature Chemistry. 7(3), 209–214.
  mla: Dell, Emma J., et al. “Molecular Length Dictates the Nature of Charge Carriers
    in Single-Molecule Junctions of Oxidized Oligothiophenes.” <i>Nature Chemistry</i>,
    vol. 7, no. 3, Springer Nature, 2015, pp. 209–14, doi:<a href="https://doi.org/10.1038/nchem.2160">10.1038/nchem.2160</a>.
  short: E.J. Dell, B. Capozzi, J. Xia, L. Venkataraman, L.M. Campos, Nature Chemistry
    7 (2015) 209–214.
date_created: 2024-09-09T10:55:42Z
date_published: 2015-02-02T00:00:00Z
date_updated: 2025-01-02T13:35:46Z
day: '02'
doi: 10.1038/nchem.2160
extern: '1'
external_id:
  pmid:
  - '25698329'
intvolume: '         7'
issue: '3'
language:
- iso: eng
month: '02'
oa_version: None
page: 209-214
pmid: 1
publication: Nature Chemistry
publication_identifier:
  eissn:
  - 1755-4349
  issn:
  - 1755-4330
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Molecular length dictates the nature of charge carriers in single-molecule
  junctions of oxidized oligothiophenes
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2015'
...
---
_id: '1802'
abstract:
- lang: eng
  text: Noncoding variants in the human MIR137 gene locus increase schizophrenia risk
    with genome-wide significance. However, the functional consequence of these risk
    alleles is unknown. Here we examined induced human neurons harboring the minor
    alleles of four disease-associated single nucleotide polymorphisms in MIR137.
    We observed increased MIR137 levels compared to those in major allele–carrying
    cells. microRNA-137 gain of function caused downregulation of the presynaptic
    target genes complexin-1 (Cplx1), Nsf and synaptotagmin-1 (Syt1), leading to impaired
    vesicle release. In vivo, miR-137 gain of function resulted in changes in synaptic
    vesicle pool distribution, impaired induction of mossy fiber long-term potentiation
    and deficits in hippocampus-dependent learning and memory. By sequestering endogenous
    miR-137, we were able to ameliorate the synaptic phenotypes. Moreover, reinstatement
    of Syt1 expression partially restored synaptic plasticity, demonstrating the importance
    of Syt1 as a miR-137 target. Our data provide new insight into the mechanism by
    which miR-137 dysregulation can impair synaptic plasticity in the hippocampus.
acknowledgement: S.S. was supported by a Human Frontier Science Program (HFSP) long-term
  postdoctoral fellowship and a Swiss National Science Foundation fellowship for prospective
  researchers. E.J.K. was supported by a Simons Foundation Postdoctoral Fellowship.
  A.R. was supported by a NARSAD Young Investigator Award. This work was supported
  by a Seed Grant from the Simons Center for the Social Brain and US National Institutes
  of Health grant RO1 MH 091115 to L.-H.T.
author:
- first_name: Sandra
  full_name: Sandra Siegert
  id: 36ACD32E-F248-11E8-B48F-1D18A9856A87
  last_name: Siegert
  orcid: 0000-0001-8635-0877
- first_name: Jinsoo
  full_name: Seo, Jinsoo
  last_name: Seo
- first_name: Ester
  full_name: Kwon, Ester J
  last_name: Kwon
- first_name: Andrii
  full_name: Rudenko, Andrii
  last_name: Rudenko
- first_name: Sukhee
  full_name: Cho, Sukhee
  last_name: Cho
- first_name: Wenyuan
  full_name: Wang, Wenyuan
  last_name: Wang
- first_name: Zachary
  full_name: Flood, Zachary C
  last_name: Flood
- first_name: Anthony
  full_name: Martorell, Anthony J
  last_name: Martorell
- first_name: Maria
  full_name: Ericsson, Maria
  last_name: Ericsson
- first_name: Alison
  full_name: Mungenast, Alison E
  last_name: Mungenast
- first_name: Lihuei
  full_name: Tsai, Lihuei
  last_name: Tsai
citation:
  ama: Siegert S, Seo J, Kwon E, et al. The schizophrenia risk gene product miR-137
    alters presynaptic plasticity. <i>Nature Neuroscience</i>. 2015;18:1008-1016.
    doi:<a href="https://doi.org/10.1038/nn.4023">10.1038/nn.4023</a>
  apa: Siegert, S., Seo, J., Kwon, E., Rudenko, A., Cho, S., Wang, W., … Tsai, L.
    (2015). The schizophrenia risk gene product miR-137 alters presynaptic plasticity.
    <i>Nature Neuroscience</i>. Nature Publishing Group. <a href="https://doi.org/10.1038/nn.4023">https://doi.org/10.1038/nn.4023</a>
  chicago: Siegert, Sandra, Jinsoo Seo, Ester Kwon, Andrii Rudenko, Sukhee Cho, Wenyuan
    Wang, Zachary Flood, et al. “The Schizophrenia Risk Gene Product MiR-137 Alters
    Presynaptic Plasticity.” <i>Nature Neuroscience</i>. Nature Publishing Group,
    2015. <a href="https://doi.org/10.1038/nn.4023">https://doi.org/10.1038/nn.4023</a>.
  ieee: S. Siegert <i>et al.</i>, “The schizophrenia risk gene product miR-137 alters
    presynaptic plasticity,” <i>Nature Neuroscience</i>, vol. 18. Nature Publishing
    Group, pp. 1008–1016, 2015.
  ista: Siegert S, Seo J, Kwon E, Rudenko A, Cho S, Wang W, Flood Z, Martorell A,
    Ericsson M, Mungenast A, Tsai L. 2015. The schizophrenia risk gene product miR-137
    alters presynaptic plasticity. Nature Neuroscience. 18, 1008–1016.
  mla: Siegert, Sandra, et al. “The Schizophrenia Risk Gene Product MiR-137 Alters
    Presynaptic Plasticity.” <i>Nature Neuroscience</i>, vol. 18, Nature Publishing
    Group, 2015, pp. 1008–16, doi:<a href="https://doi.org/10.1038/nn.4023">10.1038/nn.4023</a>.
  short: S. Siegert, J. Seo, E. Kwon, A. Rudenko, S. Cho, W. Wang, Z. Flood, A. Martorell,
    M. Ericsson, A. Mungenast, L. Tsai, Nature Neuroscience 18 (2015) 1008–1016.
date_created: 2018-12-11T11:54:05Z
date_published: 2015-07-01T00:00:00Z
date_updated: 2021-01-12T06:53:18Z
day: '01'
doi: 10.1038/nn.4023
extern: 1
intvolume: '        18'
month: '07'
page: 1008 - 1016
publication: Nature Neuroscience
publication_status: published
publisher: Nature Publishing Group
publist_id: '5308'
quality_controlled: 0
status: public
title: The schizophrenia risk gene product miR-137 alters presynaptic plasticity
type: journal_article
volume: 18
year: '2015'
...
---
_id: '1803'
abstract:
- lang: eng
  text: Repeated stress has been suggested to underlie learning and memory deficits
    via the basolateral amygdala (BLA) and the hippocampus; however, the functional
    contribution of BLA inputs to the hippocampus and their molecular repercussions
    are not well understood. Here we show that repeated stress is accompanied by generation
    of the Cdk5 (cyclin-dependent kinase 5)-activator p25, up-regulation and phosphorylation
    of glucocorticoid receptors, increased HDAC2 expression, and reduced expression
    of memoryrelated genes in the hippocampus. A combination of optogenetic and pharmacosynthetic
    approaches shows that BLA activation is both necessary and sufficient for stress-associated
    molecular changes and memory impairments. Furthermore, we show that this effect
    relies on direct glutamatergic projections from the BLA to the dorsal hippocampus.
    Finally, we show that p25 generation is necessary for the stress-induced memory
    dysfunction. Taken together, our data provide a neural circuit model for stress-induced
    hippocampal memory deficits through BLA activity-dependent p25 generation.
acknowledgement: |-
  AG047661; NIH; Schweizerische Nationalfonds zur Förderung der Wissenschaftlichen Forschung
  NS051874; NIH; Schweizerische Nationalfonds zur Förderung der Wissenschaftlichen Forschung
  SNSF; Schweizerische Nationalfonds zur Förderung der Wissenschaftlichen Forschung
author:
- first_name: Damien
  full_name: Rei, Damien
  last_name: Rei
- first_name: Xenos
  full_name: Mason, Xenos
  last_name: Mason
- first_name: Jinsoo
  full_name: Seo, Jinsoo
  last_name: Seo
- first_name: Johannes
  full_name: Gräff, Johannes
  last_name: Gräff
- first_name: Andrii
  full_name: Rudenko, Andrii
  last_name: Rudenko
- first_name: Jùn
  full_name: Wang, Jùn
  last_name: Wang
- first_name: Richard
  full_name: Rueda, Richard
  last_name: Rueda
- first_name: Sandra
  full_name: Sandra Siegert
  id: 36ACD32E-F248-11E8-B48F-1D18A9856A87
  last_name: Siegert
  orcid: 0000-0001-8635-0877
- first_name: Sukhee
  full_name: Cho, Sukhee
  last_name: Cho
- first_name: Rebecca
  full_name: Canter, Rebecca G
  last_name: Canter
- first_name: Alison
  full_name: Mungenast, Alison E
  last_name: Mungenast
- first_name: Karl
  full_name: Deisseroth, Karl A
  last_name: Deisseroth
- first_name: Lihuei
  full_name: Tsai, Lihuei
  last_name: Tsai
citation:
  ama: Rei D, Mason X, Seo J, et al. Basolateral amygdala bidirectionally modulates
    stress induced hippocampal learning and memory deficits through a p25/Cdk5-dependent
    pathway. <i>PNAS</i>. 2015;112(23):7291-7296. doi:<a href="https://doi.org/10.1073/pnas.1415845112">10.1073/pnas.1415845112</a>
  apa: Rei, D., Mason, X., Seo, J., Gräff, J., Rudenko, A., Wang, J., … Tsai, L. (2015).
    Basolateral amygdala bidirectionally modulates stress induced hippocampal learning
    and memory deficits through a p25/Cdk5-dependent pathway. <i>PNAS</i>. National
    Academy of Sciences. <a href="https://doi.org/10.1073/pnas.1415845112">https://doi.org/10.1073/pnas.1415845112</a>
  chicago: Rei, Damien, Xenos Mason, Jinsoo Seo, Johannes Gräff, Andrii Rudenko, Jùn
    Wang, Richard Rueda, et al. “Basolateral Amygdala Bidirectionally Modulates Stress
    Induced Hippocampal Learning and Memory Deficits through a P25/Cdk5-Dependent
    Pathway.” <i>PNAS</i>. National Academy of Sciences, 2015. <a href="https://doi.org/10.1073/pnas.1415845112">https://doi.org/10.1073/pnas.1415845112</a>.
  ieee: D. Rei <i>et al.</i>, “Basolateral amygdala bidirectionally modulates stress
    induced hippocampal learning and memory deficits through a p25/Cdk5-dependent
    pathway,” <i>PNAS</i>, vol. 112, no. 23. National Academy of Sciences, pp. 7291–7296,
    2015.
  ista: Rei D, Mason X, Seo J, Gräff J, Rudenko A, Wang J, Rueda R, Siegert S, Cho
    S, Canter R, Mungenast A, Deisseroth K, Tsai L. 2015. Basolateral amygdala bidirectionally
    modulates stress induced hippocampal learning and memory deficits through a p25/Cdk5-dependent
    pathway. PNAS. 112(23), 7291–7296.
  mla: Rei, Damien, et al. “Basolateral Amygdala Bidirectionally Modulates Stress
    Induced Hippocampal Learning and Memory Deficits through a P25/Cdk5-Dependent
    Pathway.” <i>PNAS</i>, vol. 112, no. 23, National Academy of Sciences, 2015, pp.
    7291–96, doi:<a href="https://doi.org/10.1073/pnas.1415845112">10.1073/pnas.1415845112</a>.
  short: D. Rei, X. Mason, J. Seo, J. Gräff, A. Rudenko, J. Wang, R. Rueda, S. Siegert,
    S. Cho, R. Canter, A. Mungenast, K. Deisseroth, L. Tsai, PNAS 112 (2015) 7291–7296.
date_created: 2018-12-11T11:54:06Z
date_published: 2015-06-09T00:00:00Z
date_updated: 2021-01-12T06:53:18Z
day: '09'
doi: 10.1073/pnas.1415845112
extern: 1
intvolume: '       112'
issue: '23'
month: '06'
page: 7291 - 7296
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '5307'
quality_controlled: 0
status: public
title: Basolateral amygdala bidirectionally modulates stress induced hippocampal learning
  and memory deficits through a p25/Cdk5-dependent pathway
type: journal_article
volume: 112
year: '2015'
...
---
_id: '1804'
abstract:
- lang: eng
  text: It is known that in classical fluids turbulence typically occurs at high Reynolds
    numbers. But can turbulence occur at low Reynolds numbers? Here we investigate
    the transition to turbulence in the classic Taylor-Couette system in which the
    rotating fluids are manufactured ferrofluids with magnetized nanoparticles embedded
    in liquid carriers. We find that, in the presence of a magnetic field transverse
    to the symmetry axis of the system, turbulence can occur at Reynolds numbers that
    are at least one order of magnitude smaller than those in conventional fluids.
    This is established by extensive computational ferrohydrodynamics through a detailed
    investigation of transitions in the flow structure, and characterization of behaviors
    of physical quantities such as the energy, the wave number, and the angular momentum
    through the bifurcations. A finding is that, as the magnetic field is increased,
    onset of turbulence can be determined accurately and reliably. Our results imply
    that experimental investigation of turbulence may be feasible by using ferrofluids.
    Our study of transition to and evolution of turbulence in the Taylor-Couette ferrofluidic
    flow system provides insights into the challenging problem of turbulence control.
article_number: '10781'
article_processing_charge: No
author:
- first_name: Sebastian
  full_name: Altmeyer, Sebastian
  id: 2EE67FDC-F248-11E8-B48F-1D18A9856A87
  last_name: Altmeyer
  orcid: 0000-0001-5964-0203
- first_name: Younghae
  full_name: Do, Younghae
  last_name: Do
- first_name: Ying
  full_name: Lai, Ying
  last_name: Lai
citation:
  ama: Altmeyer S, Do Y, Lai Y. Transition to turbulence in Taylor-Couette ferrofluidic
    flow. <i>Scientific Reports</i>. 2015;5. doi:<a href="https://doi.org/10.1038/srep10781">10.1038/srep10781</a>
  apa: Altmeyer, S., Do, Y., &#38; Lai, Y. (2015). Transition to turbulence in Taylor-Couette
    ferrofluidic flow. <i>Scientific Reports</i>. Nature Publishing Group. <a href="https://doi.org/10.1038/srep10781">https://doi.org/10.1038/srep10781</a>
  chicago: Altmeyer, Sebastian, Younghae Do, and Ying Lai. “Transition to Turbulence
    in Taylor-Couette Ferrofluidic Flow.” <i>Scientific Reports</i>. Nature Publishing
    Group, 2015. <a href="https://doi.org/10.1038/srep10781">https://doi.org/10.1038/srep10781</a>.
  ieee: S. Altmeyer, Y. Do, and Y. Lai, “Transition to turbulence in Taylor-Couette
    ferrofluidic flow,” <i>Scientific Reports</i>, vol. 5. Nature Publishing Group,
    2015.
  ista: Altmeyer S, Do Y, Lai Y. 2015. Transition to turbulence in Taylor-Couette
    ferrofluidic flow. Scientific Reports. 5, 10781.
  mla: Altmeyer, Sebastian, et al. “Transition to Turbulence in Taylor-Couette Ferrofluidic
    Flow.” <i>Scientific Reports</i>, vol. 5, 10781, Nature Publishing Group, 2015,
    doi:<a href="https://doi.org/10.1038/srep10781">10.1038/srep10781</a>.
  short: S. Altmeyer, Y. Do, Y. Lai, Scientific Reports 5 (2015).
corr_author: '1'
date_created: 2018-12-11T11:54:06Z
date_published: 2015-06-12T00:00:00Z
date_updated: 2025-09-29T10:58:13Z
day: '12'
ddc:
- '530'
department:
- _id: BjHo
doi: 10.1038/srep10781
external_id:
  isi:
  - '000356150200001'
file:
- access_level: open_access
  checksum: 7716f582f8c9d82d8f2bf80bf896b440
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:17:26Z
  date_updated: 2020-07-14T12:45:16Z
  file_id: '5280'
  file_name: IST-2016-450-v1+1_srep10781.pdf
  file_size: 2449723
  relation: main_file
file_date_updated: 2020-07-14T12:45:16Z
has_accepted_license: '1'
intvolume: '         5'
isi: 1
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
publication: Scientific Reports
publication_status: published
publisher: Nature Publishing Group
publist_id: '5306'
pubrep_id: '450'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Transition to turbulence in Taylor-Couette ferrofluidic flow
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 5
year: '2015'
...
---
OA_place: publisher
OA_type: free access
_id: '1805'
abstract:
- lang: eng
  text: 'We consider the problem of deciding whether the persistent homology group
    of a simplicial pair (K,L) can be realized as the homology H∗(X) of some complex
    X with L ⊂ X ⊂ K. We show that this problem is NP-complete even if K is embedded
    in double-struck R3. As a consequence, we show that it is NP-hard to simplify
    level and sublevel sets of scalar functions on double-struck S3 within a given
    tolerance constraint. This problem has relevance to the visualization of medical
    images by isosurfaces. We also show an implication to the theory of well groups
    of scalar functions: not every well group can be realized by some level set, and
    deciding whether a well group can be realized is NP-hard.'
article_processing_charge: No
article_type: original
author:
- first_name: Dominique
  full_name: Attali, Dominique
  last_name: Attali
- first_name: Ulrich
  full_name: Bauer, Ulrich
  id: 2ADD483A-F248-11E8-B48F-1D18A9856A87
  last_name: Bauer
  orcid: 0000-0002-9683-0724
- first_name: Olivier
  full_name: Devillers, Olivier
  last_name: Devillers
- first_name: Marc
  full_name: Glisse, Marc
  last_name: Glisse
- first_name: André
  full_name: Lieutier, André
  last_name: Lieutier
citation:
  ama: 'Attali D, Bauer U, Devillers O, Glisse M, Lieutier A. Homological reconstruction
    and simplification in R3. <i>Computational Geometry: Theory and Applications</i>.
    2015;48(8):606-621. doi:<a href="https://doi.org/10.1016/j.comgeo.2014.08.010">10.1016/j.comgeo.2014.08.010</a>'
  apa: 'Attali, D., Bauer, U., Devillers, O., Glisse, M., &#38; Lieutier, A. (2015).
    Homological reconstruction and simplification in R3. <i>Computational Geometry:
    Theory and Applications</i>. Elsevier. <a href="https://doi.org/10.1016/j.comgeo.2014.08.010">https://doi.org/10.1016/j.comgeo.2014.08.010</a>'
  chicago: 'Attali, Dominique, Ulrich Bauer, Olivier Devillers, Marc Glisse, and André
    Lieutier. “Homological Reconstruction and Simplification in R3.” <i>Computational
    Geometry: Theory and Applications</i>. Elsevier, 2015. <a href="https://doi.org/10.1016/j.comgeo.2014.08.010">https://doi.org/10.1016/j.comgeo.2014.08.010</a>.'
  ieee: 'D. Attali, U. Bauer, O. Devillers, M. Glisse, and A. Lieutier, “Homological
    reconstruction and simplification in R3,” <i>Computational Geometry: Theory and
    Applications</i>, vol. 48, no. 8. Elsevier, pp. 606–621, 2015.'
  ista: 'Attali D, Bauer U, Devillers O, Glisse M, Lieutier A. 2015. Homological reconstruction
    and simplification in R3. Computational Geometry: Theory and Applications. 48(8),
    606–621.'
  mla: 'Attali, Dominique, et al. “Homological Reconstruction and Simplification in
    R3.” <i>Computational Geometry: Theory and Applications</i>, vol. 48, no. 8, Elsevier,
    2015, pp. 606–21, doi:<a href="https://doi.org/10.1016/j.comgeo.2014.08.010">10.1016/j.comgeo.2014.08.010</a>.'
  short: 'D. Attali, U. Bauer, O. Devillers, M. Glisse, A. Lieutier, Computational
    Geometry: Theory and Applications 48 (2015) 606–621.'
corr_author: '1'
date_created: 2018-12-11T11:54:06Z
date_published: 2015-06-03T00:00:00Z
date_updated: 2025-09-23T09:18:30Z
day: '03'
department:
- _id: HeEd
doi: 10.1016/j.comgeo.2014.08.010
ec_funded: 1
external_id:
  isi:
  - '000357353200006'
intvolume: '        48'
isi: 1
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.comgeo.2014.08.010
month: '06'
oa: 1
oa_version: Published Version
page: 606 - 621
project:
- _id: 255D761E-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '318493'
  name: Topological Complex Systems
publication: 'Computational Geometry: Theory and Applications'
publication_status: published
publisher: Elsevier
publist_id: '5305'
quality_controlled: '1'
related_material:
  record:
  - id: '2812'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: Homological reconstruction and simplification in R3
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 48
year: '2015'
...
---
_id: '1807'
abstract:
- lang: eng
  text: We study a double Cahn-Hilliard type functional related to the Gross-Pitaevskii
    energy of two-components Bose-Einstein condensates. In the case of large but same
    order intercomponent and intracomponent coupling strengths, we prove Γ-convergence
    to a perimeter minimisation functional with an inhomogeneous surface tension.
    We study the asymptotic behavior of the surface tension as the ratio between the
    intercomponent and intracomponent coupling strengths becomes very small or very
    large and obtain good agreement with the physical literature. We obtain as a consequence,
    symmetry breaking of the minimisers for the harmonic potential.
article_processing_charge: No
arxiv: 1
author:
- first_name: Michael
  full_name: Goldman, Michael
  last_name: Goldman
- first_name: Jimena
  full_name: Royo-Letelier, Jimena
  id: 4D3BED28-F248-11E8-B48F-1D18A9856A87
  last_name: Royo-Letelier
citation:
  ama: Goldman M, Royo-Letelier J. Sharp interface limit for two components Bose-Einstein
    condensates. <i>ESAIM - Control, Optimisation and Calculus of Variations</i>.
    2015;21(3):603-624. doi:<a href="https://doi.org/10.1051/cocv/2014040">10.1051/cocv/2014040</a>
  apa: Goldman, M., &#38; Royo-Letelier, J. (2015). Sharp interface limit for two
    components Bose-Einstein condensates. <i>ESAIM - Control, Optimisation and Calculus
    of Variations</i>. EDP Sciences. <a href="https://doi.org/10.1051/cocv/2014040">https://doi.org/10.1051/cocv/2014040</a>
  chicago: Goldman, Michael, and Jimena Royo-Letelier. “Sharp Interface Limit for
    Two Components Bose-Einstein Condensates.” <i>ESAIM - Control, Optimisation and
    Calculus of Variations</i>. EDP Sciences, 2015. <a href="https://doi.org/10.1051/cocv/2014040">https://doi.org/10.1051/cocv/2014040</a>.
  ieee: M. Goldman and J. Royo-Letelier, “Sharp interface limit for two components
    Bose-Einstein condensates,” <i>ESAIM - Control, Optimisation and Calculus of Variations</i>,
    vol. 21, no. 3. EDP Sciences, pp. 603–624, 2015.
  ista: Goldman M, Royo-Letelier J. 2015. Sharp interface limit for two components
    Bose-Einstein condensates. ESAIM - Control, Optimisation and Calculus of Variations.
    21(3), 603–624.
  mla: Goldman, Michael, and Jimena Royo-Letelier. “Sharp Interface Limit for Two
    Components Bose-Einstein Condensates.” <i>ESAIM - Control, Optimisation and Calculus
    of Variations</i>, vol. 21, no. 3, EDP Sciences, 2015, pp. 603–24, doi:<a href="https://doi.org/10.1051/cocv/2014040">10.1051/cocv/2014040</a>.
  short: M. Goldman, J. Royo-Letelier, ESAIM - Control, Optimisation and Calculus
    of Variations 21 (2015) 603–624.
corr_author: '1'
date_created: 2018-12-11T11:54:07Z
date_published: 2015-05-01T00:00:00Z
date_updated: 2025-09-23T10:45:09Z
day: '01'
department:
- _id: RoSe
doi: 10.1051/cocv/2014040
external_id:
  arxiv:
  - '1401.1727'
  isi:
  - '000356012000001'
intvolume: '        21'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1401.1727
month: '05'
oa: 1
oa_version: Preprint
page: 603 - 624
publication: ESAIM - Control, Optimisation and Calculus of Variations
publication_status: published
publisher: EDP Sciences
publist_id: '5303'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Sharp interface limit for two components Bose-Einstein condensates
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 21
year: '2015'
...
---
_id: '1808'
article_number: '7'
article_processing_charge: No
author:
- first_name: Ashutosh
  full_name: Gupta, Ashutosh
  id: 335E5684-F248-11E8-B48F-1D18A9856A87
  last_name: Gupta
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
citation:
  ama: Gupta A, Henzinger TA. Guest editors’ introduction to special issue on computational
    methods in systems biology. <i>ACM Transactions on Modeling and Computer Simulation</i>.
    2015;25(2). doi:<a href="https://doi.org/10.1145/2745799">10.1145/2745799</a>
  apa: Gupta, A., &#38; Henzinger, T. A. (2015). Guest editors’ introduction to special
    issue on computational methods in systems biology. <i>ACM Transactions on Modeling
    and Computer Simulation</i>. ACM. <a href="https://doi.org/10.1145/2745799">https://doi.org/10.1145/2745799</a>
  chicago: Gupta, Ashutosh, and Thomas A Henzinger. “Guest Editors’ Introduction to
    Special Issue on Computational Methods in Systems Biology.” <i>ACM Transactions
    on Modeling and Computer Simulation</i>. ACM, 2015. <a href="https://doi.org/10.1145/2745799">https://doi.org/10.1145/2745799</a>.
  ieee: A. Gupta and T. A. Henzinger, “Guest editors’ introduction to special issue
    on computational methods in systems biology,” <i>ACM Transactions on Modeling
    and Computer Simulation</i>, vol. 25, no. 2. ACM, 2015.
  ista: Gupta A, Henzinger TA. 2015. Guest editors’ introduction to special issue
    on computational methods in systems biology. ACM Transactions on Modeling and
    Computer Simulation. 25(2), 7.
  mla: Gupta, Ashutosh, and Thomas A. Henzinger. “Guest Editors’ Introduction to Special
    Issue on Computational Methods in Systems Biology.” <i>ACM Transactions on Modeling
    and Computer Simulation</i>, vol. 25, no. 2, 7, ACM, 2015, doi:<a href="https://doi.org/10.1145/2745799">10.1145/2745799</a>.
  short: A. Gupta, T.A. Henzinger, ACM Transactions on Modeling and Computer Simulation
    25 (2015).
date_created: 2018-12-11T11:54:07Z
date_published: 2015-05-01T00:00:00Z
date_updated: 2025-09-23T09:11:51Z
day: '01'
department:
- _id: ToHe
doi: 10.1145/2745799
external_id:
  isi:
  - '000354789200001'
intvolume: '        25'
isi: 1
issue: '2'
language:
- iso: eng
month: '05'
oa_version: None
publication: ACM Transactions on Modeling and Computer Simulation
publication_status: published
publisher: ACM
publist_id: '5302'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Guest editors' introduction to special issue on computational methods in systems
  biology
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 25
year: '2015'
...
---
_id: '1809'
abstract:
- lang: eng
  text: 'Background: Indirect genetic effects (IGEs) occur when genes expressed in
    one individual alter the expression of traits in social partners. Previous studies
    focused on the evolutionary consequences and evolutionary dynamics of IGEs, using
    equilibrium solutions to predict phenotypes in subsequent generations. However,
    whether or not such steady states may be reached may depend on the dynamics of
    interactions themselves. Results: In our study, we focus on the dynamics of social
    interactions and indirect genetic effects and investigate how they modify phenotypes
    over time. Unlike previous IGE studies, we do not analyse evolutionary dynamics;
    rather we consider within-individual phenotypic changes, also referred to as phenotypic
    plasticity. We analyse iterative interactions, when individuals interact in a
    series of discontinuous events, and investigate the stability of steady state
    solutions and the dependence on model parameters, such as population size, strength,
    and the nature of interactions. We show that for interactions where a feedback
    loop occurs, the possible parameter space of interaction strength is fairly limited,
    affecting the evolutionary consequences of IGEs. We discuss the implications of
    our results for current IGE model predictions and their limitations.'
article_processing_charge: No
author:
- first_name: Barbora
  full_name: Trubenova, Barbora
  id: 42302D54-F248-11E8-B48F-1D18A9856A87
  last_name: Trubenova
  orcid: 0000-0002-6873-2967
- first_name: Sebastian
  full_name: Novak, Sebastian
  id: 461468AE-F248-11E8-B48F-1D18A9856A87
  last_name: Novak
  orcid: 0000-0002-2519-824X
- first_name: Reinmar
  full_name: Hager, Reinmar
  last_name: Hager
citation:
  ama: Trubenova B, Novak S, Hager R. Indirect genetic effects and the dynamics of
    social interactions. <i>PLoS One</i>. 2015;10(5). doi:<a href="https://doi.org/10.1371/journal.pone.0126907">10.1371/journal.pone.0126907</a>
  apa: Trubenova, B., Novak, S., &#38; Hager, R. (2015). Indirect genetic effects
    and the dynamics of social interactions. <i>PLoS One</i>. Public Library of Science.
    <a href="https://doi.org/10.1371/journal.pone.0126907">https://doi.org/10.1371/journal.pone.0126907</a>
  chicago: Trubenova, Barbora, Sebastian Novak, and Reinmar Hager. “Indirect Genetic
    Effects and the Dynamics of Social Interactions.” <i>PLoS One</i>. Public Library
    of Science, 2015. <a href="https://doi.org/10.1371/journal.pone.0126907">https://doi.org/10.1371/journal.pone.0126907</a>.
  ieee: B. Trubenova, S. Novak, and R. Hager, “Indirect genetic effects and the dynamics
    of social interactions,” <i>PLoS One</i>, vol. 10, no. 5. Public Library of Science,
    2015.
  ista: Trubenova B, Novak S, Hager R. 2015. Indirect genetic effects and the dynamics
    of social interactions. PLoS One. 10(5).
  mla: Trubenova, Barbora, et al. “Indirect Genetic Effects and the Dynamics of Social
    Interactions.” <i>PLoS One</i>, vol. 10, no. 5, Public Library of Science, 2015,
    doi:<a href="https://doi.org/10.1371/journal.pone.0126907">10.1371/journal.pone.0126907</a>.
  short: B. Trubenova, S. Novak, R. Hager, PLoS One 10 (2015).
corr_author: '1'
date_created: 2018-12-11T11:54:07Z
date_published: 2015-05-18T00:00:00Z
date_updated: 2025-09-23T09:21:54Z
day: '18'
ddc:
- '570'
- '576'
department:
- _id: NiBa
doi: 10.1371/journal.pone.0126907
external_id:
  isi:
  - '000354917300064'
file:
- access_level: open_access
  checksum: d3a4a58ef4bd3b3e2f32b7fd7af4a743
  content_type: application/pdf
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  date_created: 2018-12-12T10:09:07Z
  date_updated: 2020-07-14T12:45:17Z
  file_id: '4730'
  file_name: IST-2016-453-v1+1_journal.pone.0126907.pdf
  file_size: 2748982
  relation: main_file
file_date_updated: 2020-07-14T12:45:17Z
has_accepted_license: '1'
intvolume: '        10'
isi: 1
issue: '5'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
publication: PLoS One
publication_status: published
publisher: Public Library of Science
publist_id: '5299'
pubrep_id: '453'
quality_controlled: '1'
related_material:
  record:
  - id: '9715'
    relation: research_data
    status: public
  - id: '9772'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: Indirect genetic effects and the dynamics of social interactions
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 10
year: '2015'
...
---
_id: '1810'
abstract:
- lang: eng
  text: Combining antibiotics is a promising strategy for increasing treatment efficacy
    and for controlling resistance evolution. When drugs are combined, their effects
    on cells may be amplified or weakened, that is the drugs may show synergistic
    or antagonistic interactions. Recent work revealed the underlying mechanisms of
    such drug interactions by elucidating the drugs'; joint effects on cell physiology.
    Moreover, new treatment strategies that use drug combinations to exploit evolutionary
    tradeoffs were shown to affect the rate of resistance evolution in predictable
    ways. High throughput studies have further identified drug candidates based on
    their interactions with established antibiotics and general principles that enable
    the prediction of drug interactions were suggested. Overall, the conceptual and
    technical foundation for the rational design of potent drug combinations is rapidly
    developing.
article_processing_charge: No
author:
- first_name: Mark Tobias
  full_name: Bollenbach, Mark Tobias
  id: 3E6DB97A-F248-11E8-B48F-1D18A9856A87
  last_name: Bollenbach
  orcid: 0000-0003-4398-476X
citation:
  ama: 'Bollenbach MT. Antimicrobial interactions: Mechanisms and implications for
    drug discovery and resistance evolution. <i>Current Opinion in Microbiology</i>.
    2015;27:1-9. doi:<a href="https://doi.org/10.1016/j.mib.2015.05.008">10.1016/j.mib.2015.05.008</a>'
  apa: 'Bollenbach, M. T. (2015). Antimicrobial interactions: Mechanisms and implications
    for drug discovery and resistance evolution. <i>Current Opinion in Microbiology</i>.
    Elsevier. <a href="https://doi.org/10.1016/j.mib.2015.05.008">https://doi.org/10.1016/j.mib.2015.05.008</a>'
  chicago: 'Bollenbach, Mark Tobias. “Antimicrobial Interactions: Mechanisms and Implications
    for Drug Discovery and Resistance Evolution.” <i>Current Opinion in Microbiology</i>.
    Elsevier, 2015. <a href="https://doi.org/10.1016/j.mib.2015.05.008">https://doi.org/10.1016/j.mib.2015.05.008</a>.'
  ieee: 'M. T. Bollenbach, “Antimicrobial interactions: Mechanisms and implications
    for drug discovery and resistance evolution,” <i>Current Opinion in Microbiology</i>,
    vol. 27. Elsevier, pp. 1–9, 2015.'
  ista: 'Bollenbach MT. 2015. Antimicrobial interactions: Mechanisms and implications
    for drug discovery and resistance evolution. Current Opinion in Microbiology.
    27, 1–9.'
  mla: 'Bollenbach, Mark Tobias. “Antimicrobial Interactions: Mechanisms and Implications
    for Drug Discovery and Resistance Evolution.” <i>Current Opinion in Microbiology</i>,
    vol. 27, Elsevier, 2015, pp. 1–9, doi:<a href="https://doi.org/10.1016/j.mib.2015.05.008">10.1016/j.mib.2015.05.008</a>.'
  short: M.T. Bollenbach, Current Opinion in Microbiology 27 (2015) 1–9.
corr_author: '1'
date_created: 2018-12-11T11:54:08Z
date_published: 2015-06-01T00:00:00Z
date_updated: 2025-09-23T07:55:38Z
day: '01'
ddc:
- '570'
department:
- _id: ToBo
doi: 10.1016/j.mib.2015.05.008
ec_funded: 1
external_id:
  isi:
  - '000365065400003'
file:
- access_level: open_access
  checksum: 1683bb0f42ef892a5b3b71a050d65d25
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:17:23Z
  date_updated: 2020-07-14T12:45:17Z
  file_id: '5277'
  file_name: IST-2016-493-v1+1_1-s2.0-S1369527415000594-main.pdf
  file_size: 1047255
  relation: main_file
file_date_updated: 2020-07-14T12:45:17Z
has_accepted_license: '1'
intvolume: '        27'
isi: 1
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 1 - 9
project:
- _id: 25E9AF9E-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P27201-B22
  name: Revealing the mechanisms underlying drug interactions
- _id: 25E83C2C-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '303507'
  name: Optimality principles in responses to antibiotics
- _id: 25EB3A80-B435-11E9-9278-68D0E5697425
  grant_number: RGP0042/2013
  name: Revealing the fundamental limits of cell growth
publication: Current Opinion in Microbiology
publication_status: published
publisher: Elsevier
publist_id: '5298'
pubrep_id: '493'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Antimicrobial interactions: Mechanisms and implications for drug discovery
  and resistance evolution'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 27
year: '2015'
...
---
_id: '1811'
abstract:
- lang: eng
  text: Atomic form factors are widely used for the characterization of targets and
    specimens, from crystallography to biology. By using recent mathematical results,
    here we derive an analytical expression for the atomic form factor within the
    independent particle model constructed from nonrelativistic screened hydrogenic
    wave functions. The range of validity of this analytical expression is checked
    by comparing the analytically obtained form factors with the ones obtained within
    the Hartee-Fock method. As an example, we apply our analytical expression for
    the atomic form factor to evaluate the differential cross section for Rayleigh
    scattering off neutral atoms.
acknowledgement: The research leading to these results has received funding from the
  People Programme (Marie Curie Actions) of the European Union’s Seventh Framework
  Programme (FP7/2007-2013) under REA grant agreement n◦ [291734]. F.F. acknowledges
  support by Fundação de Amparo à Pesquisa do estado de Minas Gerais (FAPEMIG), by
  Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq), and by the
  Austrian Science Fund (FWF) through the START Grant No. Y 591-N16.
article_number: '052105'
article_processing_charge: No
arxiv: 1
author:
- first_name: Laleh
  full_name: Safari, Laleh
  id: 3C325E5E-F248-11E8-B48F-1D18A9856A87
  last_name: Safari
- first_name: José
  full_name: Santos, José
  last_name: Santos
- first_name: Pedro
  full_name: Amaro, Pedro
  last_name: Amaro
- first_name: Kari
  full_name: Jänkälä, Kari
  last_name: Jänkälä
- first_name: Filippo
  full_name: Fratini, Filippo
  last_name: Fratini
citation:
  ama: 'Safari L, Santos J, Amaro P, Jänkälä K, Fratini F. Analytical evaluation of
    atomic form factors: Application to Rayleigh scattering. <i>Journal of Mathematical
    Physics</i>. 2015;56(5). doi:<a href="https://doi.org/10.1063/1.4921227">10.1063/1.4921227</a>'
  apa: 'Safari, L., Santos, J., Amaro, P., Jänkälä, K., &#38; Fratini, F. (2015).
    Analytical evaluation of atomic form factors: Application to Rayleigh scattering.
    <i>Journal of Mathematical Physics</i>. American Institute of Physics. <a href="https://doi.org/10.1063/1.4921227">https://doi.org/10.1063/1.4921227</a>'
  chicago: 'Safari, Laleh, José Santos, Pedro Amaro, Kari Jänkälä, and Filippo Fratini.
    “Analytical Evaluation of Atomic Form Factors: Application to Rayleigh Scattering.”
    <i>Journal of Mathematical Physics</i>. American Institute of Physics, 2015. <a
    href="https://doi.org/10.1063/1.4921227">https://doi.org/10.1063/1.4921227</a>.'
  ieee: 'L. Safari, J. Santos, P. Amaro, K. Jänkälä, and F. Fratini, “Analytical evaluation
    of atomic form factors: Application to Rayleigh scattering,” <i>Journal of Mathematical
    Physics</i>, vol. 56, no. 5. American Institute of Physics, 2015.'
  ista: 'Safari L, Santos J, Amaro P, Jänkälä K, Fratini F. 2015. Analytical evaluation
    of atomic form factors: Application to Rayleigh scattering. Journal of Mathematical
    Physics. 56(5), 052105.'
  mla: 'Safari, Laleh, et al. “Analytical Evaluation of Atomic Form Factors: Application
    to Rayleigh Scattering.” <i>Journal of Mathematical Physics</i>, vol. 56, no.
    5, 052105, American Institute of Physics, 2015, doi:<a href="https://doi.org/10.1063/1.4921227">10.1063/1.4921227</a>.'
  short: L. Safari, J. Santos, P. Amaro, K. Jänkälä, F. Fratini, Journal of Mathematical
    Physics 56 (2015).
corr_author: '1'
date_created: 2018-12-11T11:54:08Z
date_published: 2015-05-20T00:00:00Z
date_updated: 2025-09-23T07:53:00Z
day: '20'
department:
- _id: MiLe
doi: 10.1063/1.4921227
ec_funded: 1
external_id:
  arxiv:
  - '1409.0110'
  isi:
  - '000355920800016'
intvolume: '        56'
isi: 1
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1409.0110
month: '05'
oa: 1
oa_version: Preprint
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Journal of Mathematical Physics
publication_status: published
publisher: American Institute of Physics
publist_id: '5295'
scopus_import: '1'
status: public
title: 'Analytical evaluation of atomic form factors: Application to Rayleigh scattering'
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 56
year: '2015'
...
---
_id: '1812'
abstract:
- lang: eng
  text: "We investigate the occurrence of rotons in a quadrupolar Bose–Einstein condensate
    confined to two dimensions. Depending on the particle density, the ratio of the
    contact and quadrupole–quadrupole interactions, and the alignment of the quadrupole
    moments with respect to the confinement plane, the dispersion relation features
    two or four point-like roton minima or one ring-shaped minimum. We map out the
    entire parameter space of the roton behavior and identify the instability regions.
    We propose to observe the exotic rotons by monitoring the characteristic density
    wave dynamics resulting from a short local perturbation, and discuss the possibilities
    to detect the predicted effects in state-of-the-art experiments with ultracold
    homonuclear molecules.\r\n"
article_number: '045005'
article_processing_charge: No
author:
- first_name: Martin
  full_name: Lahrz, Martin
  last_name: Lahrz
- first_name: Mikhail
  full_name: Lemeshko, Mikhail
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Ludwig
  full_name: Mathey, Ludwig
  last_name: Mathey
citation:
  ama: Lahrz M, Lemeshko M, Mathey L. Exotic roton excitations in quadrupolar Bose–Einstein
    condensates . <i>New Journal of Physics</i>. 2015;17(4). doi:<a href="https://doi.org/10.1088/1367-2630/17/4/045005">10.1088/1367-2630/17/4/045005</a>
  apa: Lahrz, M., Lemeshko, M., &#38; Mathey, L. (2015). Exotic roton excitations
    in quadrupolar Bose–Einstein condensates . <i>New Journal of Physics</i>. IOP
    Publishing. <a href="https://doi.org/10.1088/1367-2630/17/4/045005">https://doi.org/10.1088/1367-2630/17/4/045005</a>
  chicago: Lahrz, Martin, Mikhail Lemeshko, and Ludwig Mathey. “Exotic Roton Excitations
    in Quadrupolar Bose–Einstein Condensates .” <i>New Journal of Physics</i>. IOP
    Publishing, 2015. <a href="https://doi.org/10.1088/1367-2630/17/4/045005">https://doi.org/10.1088/1367-2630/17/4/045005</a>.
  ieee: M. Lahrz, M. Lemeshko, and L. Mathey, “Exotic roton excitations in quadrupolar
    Bose–Einstein condensates ,” <i>New Journal of Physics</i>, vol. 17, no. 4. IOP
    Publishing, 2015.
  ista: Lahrz M, Lemeshko M, Mathey L. 2015. Exotic roton excitations in quadrupolar
    Bose–Einstein condensates . New Journal of Physics. 17(4), 045005.
  mla: Lahrz, Martin, et al. “Exotic Roton Excitations in Quadrupolar Bose–Einstein
    Condensates .” <i>New Journal of Physics</i>, vol. 17, no. 4, 045005, IOP Publishing,
    2015, doi:<a href="https://doi.org/10.1088/1367-2630/17/4/045005">10.1088/1367-2630/17/4/045005</a>.
  short: M. Lahrz, M. Lemeshko, L. Mathey, New Journal of Physics 17 (2015).
date_created: 2018-12-11T11:54:09Z
date_published: 2015-04-01T00:00:00Z
date_updated: 2025-09-23T08:45:19Z
day: '01'
ddc:
- '530'
department:
- _id: MiLe
doi: 10.1088/1367-2630/17/4/045005
external_id:
  isi:
  - '000354022400001'
file:
- access_level: open_access
  checksum: 551f751a75b39b89a1db2f7f498f9a49
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:15:59Z
  date_updated: 2020-07-14T12:45:17Z
  file_id: '5184'
  file_name: IST-2016-446-v1+1_document.pdf
  file_size: 1900925
  relation: main_file
file_date_updated: 2020-07-14T12:45:17Z
has_accepted_license: '1'
intvolume: '        17'
isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
publication: New Journal of Physics
publication_status: published
publisher: IOP Publishing
publist_id: '5294'
pubrep_id: '446'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Exotic roton excitations in quadrupolar Bose–Einstein condensates '
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 17
year: '2015'
...
---
_id: '1813'
abstract:
- lang: eng
  text: We develop a microscopic theory describing a quantum impurity whose rotational
    degree of freedom is coupled to a many-particle bath. We approach the problem
    by introducing the concept of an “angulon”—a quantum rotor dressed by a quantum
    field—and reveal its quasiparticle properties using a combination of variational
    and diagrammatic techniques. Our theory predicts renormalization of the impurity
    rotational structure, such as that observed in experiments with molecules in superfluid
    helium droplets, in terms of a rotational Lamb shift induced by the many-particle
    environment. Furthermore, we discover a rich many-body-induced fine structure,
    emerging in rotational spectra due to a redistribution of angular momentum within
    the quantum many-body system.
article_number: '203001'
article_processing_charge: No
arxiv: 1
author:
- first_name: Richard
  full_name: Schmidt, Richard
  last_name: Schmidt
- first_name: Mikhail
  full_name: Lemeshko, Mikhail
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
citation:
  ama: Schmidt R, Lemeshko M. Rotation of quantum impurities in the presence of a
    many-body environment. <i>Physical Review Letters</i>. 2015;114(20). doi:<a href="https://doi.org/10.1103/PhysRevLett.114.203001">10.1103/PhysRevLett.114.203001</a>
  apa: Schmidt, R., &#38; Lemeshko, M. (2015). Rotation of quantum impurities in the
    presence of a many-body environment. <i>Physical Review Letters</i>. American
    Physical Society. <a href="https://doi.org/10.1103/PhysRevLett.114.203001">https://doi.org/10.1103/PhysRevLett.114.203001</a>
  chicago: Schmidt, Richard, and Mikhail Lemeshko. “Rotation of Quantum Impurities
    in the Presence of a Many-Body Environment.” <i>Physical Review Letters</i>. American
    Physical Society, 2015. <a href="https://doi.org/10.1103/PhysRevLett.114.203001">https://doi.org/10.1103/PhysRevLett.114.203001</a>.
  ieee: R. Schmidt and M. Lemeshko, “Rotation of quantum impurities in the presence
    of a many-body environment,” <i>Physical Review Letters</i>, vol. 114, no. 20.
    American Physical Society, 2015.
  ista: Schmidt R, Lemeshko M. 2015. Rotation of quantum impurities in the presence
    of a many-body environment. Physical Review Letters. 114(20), 203001.
  mla: Schmidt, Richard, and Mikhail Lemeshko. “Rotation of Quantum Impurities in
    the Presence of a Many-Body Environment.” <i>Physical Review Letters</i>, vol.
    114, no. 20, 203001, American Physical Society, 2015, doi:<a href="https://doi.org/10.1103/PhysRevLett.114.203001">10.1103/PhysRevLett.114.203001</a>.
  short: R. Schmidt, M. Lemeshko, Physical Review Letters 114 (2015).
corr_author: '1'
date_created: 2018-12-11T11:54:09Z
date_published: 2015-05-18T00:00:00Z
date_updated: 2025-09-23T10:40:28Z
day: '18'
department:
- _id: MiLe
doi: 10.1103/PhysRevLett.114.203001
external_id:
  arxiv:
  - '1502.03447'
  isi:
  - '000354969900003'
intvolume: '       114'
isi: 1
issue: '20'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1502.03447
month: '05'
oa: 1
oa_version: Preprint
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '5293'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Rotation of quantum impurities in the presence of a many-body environment
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 114
year: '2015'
...
