---
_id: '1325'
abstract:
- lang: eng
text: We study graphs and two-player games in which rewards are assigned to states,
and the goal of the players is to satisfy or dissatisfy certain property of the
generated outcome, given as a mean payoff property. Since the notion of mean-payoff
does not reflect possible fluctuations from the mean-payoff along a run, we propose
definitions and algorithms for capturing the stability of the system, and give
algorithms for deciding if a given mean payoff and stability objective can be
ensured in the system.
acknowledgement: "The work has been supported by the Czech Science Foundation, grant
No. 15-17564S, by EPSRC grant\r\nEP/M023656/1, and by the People Programme (Marie
Curie Actions) of the European Union’s Seventh\r\nFramework Programme (FP7/2007-2013)
under REA grant agreement no [291734]"
alternative_title:
- LIPIcs
article_number: '10'
author:
- first_name: Tomáš
full_name: Brázdil, Tomáš
last_name: Brázdil
- first_name: Vojtěch
full_name: Forejt, Vojtěch
last_name: Forejt
- first_name: Antonín
full_name: Kučera, Antonín
last_name: Kučera
- first_name: Petr
full_name: Novotny, Petr
id: 3CC3B868-F248-11E8-B48F-1D18A9856A87
last_name: Novotny
citation:
ama: 'Brázdil T, Forejt V, Kučera A, Novotný P. Stability in graphs and games. In:
Vol 59. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2016. doi:10.4230/LIPIcs.CONCUR.2016.10'
apa: 'Brázdil, T., Forejt, V., Kučera, A., & Novotný, P. (2016). Stability in
graphs and games (Vol. 59). Presented at the CONCUR: Concurrency Theory, Quebec
City, Canada: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.CONCUR.2016.10'
chicago: Brázdil, Tomáš, Vojtěch Forejt, Antonín Kučera, and Petr Novotný. “Stability
in Graphs and Games,” Vol. 59. Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
2016. https://doi.org/10.4230/LIPIcs.CONCUR.2016.10.
ieee: 'T. Brázdil, V. Forejt, A. Kučera, and P. Novotný, “Stability in graphs and
games,” presented at the CONCUR: Concurrency Theory, Quebec City, Canada, 2016,
vol. 59.'
ista: 'Brázdil T, Forejt V, Kučera A, Novotný P. 2016. Stability in graphs and games.
CONCUR: Concurrency Theory, LIPIcs, vol. 59, 10.'
mla: Brázdil, Tomáš, et al. Stability in Graphs and Games. Vol. 59, 10, Schloss
Dagstuhl - Leibniz-Zentrum für Informatik, 2016, doi:10.4230/LIPIcs.CONCUR.2016.10.
short: T. Brázdil, V. Forejt, A. Kučera, P. Novotný, in:, Schloss Dagstuhl - Leibniz-Zentrum
für Informatik, 2016.
conference:
end_date: 2016-08-26
location: Quebec City, Canada
name: 'CONCUR: Concurrency Theory'
start_date: 2016-08-23
corr_author: '1'
date_created: 2018-12-11T11:51:23Z
date_published: 2016-08-01T00:00:00Z
date_updated: 2024-10-09T20:57:03Z
day: '01'
ddc:
- '004'
department:
- _id: KrCh
doi: 10.4230/LIPIcs.CONCUR.2016.10
ec_funded: 1
file:
- access_level: open_access
checksum: 3c2dc6ab0358f8aa8f7aa7d6c1293159
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:16:40Z
date_updated: 2020-07-14T12:44:44Z
file_id: '5229'
file_name: IST-2016-665-v1+1_Forejt_et_al__Stability_in_graphs_and_games.pdf
file_size: 553648
relation: main_file
file_date_updated: 2020-07-14T12:44:44Z
fulldoi: https://doi.org/10.4230/LIPIcs.CONCUR.2016.10
has_accepted_license: '1'
intvolume: ' 59'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '291734'
name: International IST Postdoc Fellowship Programme
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '5944'
pubrep_id: '665'
quality_controlled: '1'
scopus_import: 1
status: public
title: Stability in graphs and games
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 59
year: '2016'
...
---
_id: '1326'
abstract:
- lang: eng
text: 'Energy Markov Decision Processes (EMDPs) are finite-state Markov decision
processes where each transition is assigned an integer counter update and a rational
payoff. An EMDP configuration is a pair s(n), where s is a control state and n
is the current counter value. The configurations are changed by performing transitions
in the standard way. We consider the problem of computing a safe strategy (i.e.,
a strategy that keeps the counter non-negative) which maximizes the expected mean
payoff. '
acknowledgement: The research was funded by the Czech Science Foundation Grant No.
P202/12/G061 and by the People Programme (Marie Curie Actions) of the European Union’s
Seventh Framework Programme (FP7/2007-2013) under REA grant agreement no [291734].
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Tomáš
full_name: Brázdil, Tomáš
last_name: Brázdil
- first_name: Antonín
full_name: Kučera, Antonín
last_name: Kučera
- first_name: Petr
full_name: Novotny, Petr
id: 3CC3B868-F248-11E8-B48F-1D18A9856A87
last_name: Novotny
citation:
ama: 'Brázdil T, Kučera A, Novotný P. Optimizing the expected mean payoff in Energy
Markov Decision Processes. In: Vol 9938. Springer; 2016:32-49. doi:10.1007/978-3-319-46520-3_3'
apa: 'Brázdil, T., Kučera, A., & Novotný, P. (2016). Optimizing the expected
mean payoff in Energy Markov Decision Processes (Vol. 9938, pp. 32–49). Presented
at the ATVA: Automated Technology for Verification and Analysis, Chiba, Japan:
Springer. https://doi.org/10.1007/978-3-319-46520-3_3'
chicago: Brázdil, Tomáš, Antonín Kučera, and Petr Novotný. “Optimizing the Expected
Mean Payoff in Energy Markov Decision Processes,” 9938:32–49. Springer, 2016.
https://doi.org/10.1007/978-3-319-46520-3_3.
ieee: 'T. Brázdil, A. Kučera, and P. Novotný, “Optimizing the expected mean payoff
in Energy Markov Decision Processes,” presented at the ATVA: Automated Technology
for Verification and Analysis, Chiba, Japan, 2016, vol. 9938, pp. 32–49.'
ista: 'Brázdil T, Kučera A, Novotný P. 2016. Optimizing the expected mean payoff
in Energy Markov Decision Processes. ATVA: Automated Technology for Verification
and Analysis, LNCS, vol. 9938, 32–49.'
mla: Brázdil, Tomáš, et al. Optimizing the Expected Mean Payoff in Energy Markov
Decision Processes. Vol. 9938, Springer, 2016, pp. 32–49, doi:10.1007/978-3-319-46520-3_3.
short: T. Brázdil, A. Kučera, P. Novotný, in:, Springer, 2016, pp. 32–49.
conference:
end_date: 2016-10-20
location: Chiba, Japan
name: 'ATVA: Automated Technology for Verification and Analysis'
start_date: 2016-10-17
corr_author: '1'
date_created: 2018-12-11T11:51:23Z
date_published: 2016-09-22T00:00:00Z
date_updated: 2025-09-22T08:25:26Z
day: '22'
department:
- _id: KrCh
doi: 10.1007/978-3-319-46520-3_3
ec_funded: 1
external_id:
arxiv:
- '1607.00678'
isi:
- '000389808100003'
fulldoi: https://doi.org/10.1007/978-3-319-46520-3_3
intvolume: ' 9938'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1607.00678
month: '09'
oa: 1
oa_version: Preprint
page: 32 - 49
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '291734'
name: International IST Postdoc Fellowship Programme
publication_status: published
publisher: Springer
publist_id: '5943'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Optimizing the expected mean payoff in Energy Markov Decision Processes
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 9938
year: '2016'
...
---
_id: '1327'
abstract:
- lang: eng
text: 'We consider partially observable Markov decision processes (POMDPs) with
a set of target states and positive integer costs associated with every transition.
The traditional optimization objective (stochastic shortest path) asks to minimize
the expected total cost until the target set is reached. We extend the traditional
framework of POMDPs to model energy consumption, which represents a hard constraint.
The energy levels may increase and decrease with transitions, and the hard constraint
requires that the energy level must remain positive in all steps till the target
is reached. First, we present a novel algorithm for solving POMDPs with energy
levels, developing on existing POMDP solvers and using RTDP as its main method.
Our second contribution is related to policy representation. For larger POMDP
instances the policies computed by existing solvers are too large to be understandable.
We present an automated procedure based on machine learning techniques that automatically
extracts important decisions of the policy allowing us to compute succinct human
readable policies. Finally, we show experimentally that our algorithm performs
well and computes succinct policies on a number of POMDP instances from the literature
that were naturally enhanced with energy levels. '
article_processing_charge: No
arxiv: 1
author:
- first_name: Tomáš
full_name: Brázdil, Tomáš
last_name: Brázdil
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Martin
full_name: Chmelik, Martin
id: 3624234E-F248-11E8-B48F-1D18A9856A87
last_name: Chmelik
- first_name: Anchit
full_name: Gupta, Anchit
last_name: Gupta
- first_name: Petr
full_name: Novotny, Petr
id: 3CC3B868-F248-11E8-B48F-1D18A9856A87
last_name: Novotny
citation:
ama: 'Brázdil T, Chatterjee K, Chmelik M, Gupta A, Novotný P. Stochastic shortest
path with energy constraints in POMDPs. In: Proceedings of the 15th International
Conference on Autonomous Agents and Multiagent Systems. ACM; 2016:1465-1466.'
apa: 'Brázdil, T., Chatterjee, K., Chmelik, M., Gupta, A., & Novotný, P. (2016).
Stochastic shortest path with energy constraints in POMDPs. In Proceedings
of the 15th International Conference on Autonomous Agents and Multiagent Systems
(pp. 1465–1466). Singapore: ACM.'
chicago: Brázdil, Tomáš, Krishnendu Chatterjee, Martin Chmelik, Anchit Gupta, and
Petr Novotný. “Stochastic Shortest Path with Energy Constraints in POMDPs.” In
Proceedings of the 15th International Conference on Autonomous Agents and Multiagent
Systems, 1465–66. ACM, 2016.
ieee: T. Brázdil, K. Chatterjee, M. Chmelik, A. Gupta, and P. Novotný, “Stochastic
shortest path with energy constraints in POMDPs,” in Proceedings of the 15th
International Conference on Autonomous Agents and Multiagent Systems, Singapore,
2016, pp. 1465–1466.
ista: 'Brázdil T, Chatterjee K, Chmelik M, Gupta A, Novotný P. 2016. Stochastic
shortest path with energy constraints in POMDPs. Proceedings of the 15th International
Conference on Autonomous Agents and Multiagent Systems. AAMAS: Autonomous Agents
& Multiagent Systems, 1465–1466.'
mla: Brázdil, Tomáš, et al. “Stochastic Shortest Path with Energy Constraints in
POMDPs.” Proceedings of the 15th International Conference on Autonomous Agents
and Multiagent Systems, ACM, 2016, pp. 1465–66.
short: T. Brázdil, K. Chatterjee, M. Chmelik, A. Gupta, P. Novotný, in:, Proceedings
of the 15th International Conference on Autonomous Agents and Multiagent Systems,
ACM, 2016, pp. 1465–1466.
conference:
end_date: 2016-05-13
location: Singapore
name: 'AAMAS: Autonomous Agents & Multiagent Systems'
start_date: 2016-05-09
date_created: 2018-12-11T11:51:23Z
date_published: 2016-01-01T00:00:00Z
date_updated: 2025-06-04T10:26:23Z
day: '01'
department:
- _id: KrCh
ec_funded: 1
external_id:
arxiv:
- '1602.07565'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1602.07565
month: '01'
oa: 1
oa_version: Preprint
page: 1465 - 1466
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P 23499-N23
name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S 11407_N23
name: Rigorous Systems Engineering
- _id: 25681D80-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '291734'
name: International IST Postdoc Fellowship Programme
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '279307'
name: 'Quantitative Graph Games: Theory and Applications'
publication: Proceedings of the 15th International Conference on Autonomous Agents
and Multiagent Systems
publication_status: published
publisher: ACM
publist_id: '5942'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Stochastic shortest path with energy constraints in POMDPs
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '1328'
abstract:
- lang: eng
text: Hole spins have gained considerable interest in the past few years due to
their potential for fast electrically controlled qubits. Here, we study holes
confined in Ge hut wires, a so-far unexplored type of nanostructure. Low-temperature
magnetotransport measurements reveal a large anisotropy between the in-plane and
out-of-plane g-factors of up to 18. Numerical simulations verify that this large
anisotropy originates from a confined wave function of heavy-hole character. A
light-hole admixture of less than 1% is estimated for the states of lowest energy,
leading to a surprisingly large reduction of the out-of-plane g-factors compared
with those for pure heavy holes. Given this tiny light-hole contribution, the
spin lifetimes are expected to be very long, even in isotopically nonpurified
samples.
acknowledgement: 'The work was supported by the EC FP7 ICT project SiSPIN no. 323841,
the EC FP7 ICT project PAMS no. 610446, the ERC Starting Grant no. 335497, the FWF-I-1190-N20
project, and the Swiss NSF. We acknowledge F. Schäffler for fruitful discussions
related to the hut wire growth and for giving us access to the molecular beam epitaxy
system, M. Schatzl for her support in electron beam lithography, and V. Jadris ̌ko
for helping us with the COMSOL simulations. Finally, we thank G. Bauer for his continuous
support. '
article_processing_charge: No
author:
- first_name: Hannes
full_name: Watzinger, Hannes
id: 35DF8E50-F248-11E8-B48F-1D18A9856A87
last_name: Watzinger
- first_name: Christoph
full_name: Kloeffel, Christoph
last_name: Kloeffel
- first_name: Lada
full_name: Vukusic, Lada
id: 31E9F056-F248-11E8-B48F-1D18A9856A87
last_name: Vukusic
orcid: 0000-0003-2424-8636
- first_name: Marta
full_name: Rossell, Marta
last_name: Rossell
- first_name: Violetta
full_name: Sessi, Violetta
last_name: Sessi
- first_name: Josip
full_name: Kukucka, Josip
id: 3F5D8856-F248-11E8-B48F-1D18A9856A87
last_name: Kukucka
- first_name: Raimund
full_name: Kirchschlager, Raimund
last_name: Kirchschlager
- first_name: Elisabeth
full_name: Lausecker, Elisabeth
id: 33662F76-F248-11E8-B48F-1D18A9856A87
last_name: Lausecker
- first_name: Alisha
full_name: Truhlar, Alisha
id: 49CBC780-F248-11E8-B48F-1D18A9856A87
last_name: Truhlar
- first_name: Martin
full_name: Glaser, Martin
last_name: Glaser
- first_name: Armando
full_name: Rastelli, Armando
last_name: Rastelli
- first_name: Andreas
full_name: Fuhrer, Andreas
last_name: Fuhrer
- first_name: Daniel
full_name: Loss, Daniel
last_name: Loss
- first_name: Georgios
full_name: Katsaros, Georgios
id: 38DB5788-F248-11E8-B48F-1D18A9856A87
last_name: Katsaros
orcid: 0000-0001-8342-202X
citation:
ama: Watzinger H, Kloeffel C, Vukušić L, et al. Heavy-hole states in germanium hut
wires. Nano Letters. 2016;16(11):6879-6885. doi:10.1021/acs.nanolett.6b02715
apa: Watzinger, H., Kloeffel, C., Vukušić, L., Rossell, M., Sessi, V., Kukucka,
J., … Katsaros, G. (2016). Heavy-hole states in germanium hut wires. Nano Letters.
American Chemical Society. https://doi.org/10.1021/acs.nanolett.6b02715
chicago: Watzinger, Hannes, Christoph Kloeffel, Lada Vukušić, Marta Rossell, Violetta
Sessi, Josip Kukucka, Raimund Kirchschlager, et al. “Heavy-Hole States in Germanium
Hut Wires.” Nano Letters. American Chemical Society, 2016. https://doi.org/10.1021/acs.nanolett.6b02715.
ieee: H. Watzinger et al., “Heavy-hole states in germanium hut wires,” Nano
Letters, vol. 16, no. 11. American Chemical Society, pp. 6879–6885, 2016.
ista: Watzinger H, Kloeffel C, Vukušić L, Rossell M, Sessi V, Kukucka J, Kirchschlager
R, Lausecker E, Truhlar A, Glaser M, Rastelli A, Fuhrer A, Loss D, Katsaros G.
2016. Heavy-hole states in germanium hut wires. Nano Letters. 16(11), 6879–6885.
mla: Watzinger, Hannes, et al. “Heavy-Hole States in Germanium Hut Wires.” Nano
Letters, vol. 16, no. 11, American Chemical Society, 2016, pp. 6879–85, doi:10.1021/acs.nanolett.6b02715.
short: H. Watzinger, C. Kloeffel, L. Vukušić, M. Rossell, V. Sessi, J. Kukucka,
R. Kirchschlager, E. Lausecker, A. Truhlar, M. Glaser, A. Rastelli, A. Fuhrer,
D. Loss, G. Katsaros, Nano Letters 16 (2016) 6879–6885.
corr_author: '1'
date_created: 2018-12-11T11:51:24Z
date_published: 2016-09-22T00:00:00Z
date_updated: 2026-04-08T07:27:13Z
day: '22'
ddc:
- '539'
department:
- _id: GeKa
doi: 10.1021/acs.nanolett.6b02715
ec_funded: 1
external_id:
isi:
- '000387625000025'
file:
- access_level: open_access
checksum: b63feece90d7b620ece49ca632e34ff3
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:14:04Z
date_updated: 2020-07-14T12:44:44Z
file_id: '5053'
file_name: IST-2016-664-v1+1_acs.nanolett.6b02715.pdf
file_size: 535121
relation: main_file
file_date_updated: 2020-07-14T12:44:44Z
fulldoi: https://doi.org/10.1021/acs.nanolett.6b02715
has_accepted_license: '1'
intvolume: ' 16'
isi: 1
issue: '11'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 6879 - 6885
project:
- _id: 25517E86-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '335497'
name: Towards Spin qubits and Majorana fermions in Germanium self assembled hut-wires
publication: Nano Letters
publication_status: published
publisher: American Chemical Society
publist_id: '5941'
pubrep_id: '664'
quality_controlled: '1'
related_material:
record:
- id: '7977'
relation: popular_science
- id: '7996'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: Heavy-hole states in germanium hut wires
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 16
year: '2016'
...
---
_id: '1329'
abstract:
- lang: eng
text: Daphnia species have become models for ecological genomics and exhibit interesting
features, such as high phenotypic plasticity and a densely packed genome with
many lineage-specific genes. They are also cyclic parthenogenetic, with alternating
asexual and sexual cycles and environmental sex determination. Here, we present
a de novo transcriptome assembly of over 32,000 D. galeata genes and use it to
investigate gene expression in females and spontaneously produced males of two
clonal lines derived from lakes in Germany and the Czech Republic. We find that
only a low percentage (18%) of genes shows sex-biased expression and that there
are many more female-biased gene (FBG) than male-biased gene (MBG). Furthermore,
FBGs tend to be more conserved between species than MBGs in both sequence and
expression. These patterns may be a consequence of cyclic parthenogenesis leading
to a relaxation of purifying selection on MBGs. The two clonal lines show considerable
differences in both number and identity of sex-biased genes, suggesting that they
may have reproductive strategies differing in their investment in sexual reproduction.
Orthologs of key genes in the sex determination and juvenile hormone pathways,
which are thought to be important for the transition from asexual to sexual reproduction,
are present in D. galeata and highly conserved among Daphnia species.
acknowledgement: This study was financially supported by individual grants from the
Volkswagen Stiftung (to M.C.), the Deutsche Forschungsgemeinschaft (grant PA 903/6
to J.P.) and the DAAD (to A.K.H.). The authors would like to thank I. Schrank, L.
Theodosiou, M. Kredler, C. Laforsch, J. Wolinska, J. Griebel, R. Jaenichen, and
K. Otte for providing the necessary resources and help for maintaining Daphnia cultures
in the laboratory. H. Lainer supported us for the molecular laboratory work. D.
Gilbert and J. K. Colbourne contributed ideas for the bioinformatics analysis, and
L. Hardulak did the orthology mapping including more insect species. This study
was financially supported by individual grants from the Volkswagen Stiftung (to
M.C.), the Deutsche Forschungsgemeinschaft (grant PA 903/6 to J.P.) and the DAAD
(to A.K.H.). This work benefits from and contributes to the Daphnia Genomics Consortium.
article_processing_charge: No
author:
- first_name: Ann K
full_name: Huylmans, Ann K
id: 4C0A3874-F248-11E8-B48F-1D18A9856A87
last_name: Huylmans
orcid: 0000-0001-8871-4961
- first_name: Alberto
full_name: López Ezquerra, Alberto
last_name: López Ezquerra
- first_name: John
full_name: Parsch, John
last_name: Parsch
- first_name: Mathilde
full_name: Cordellier, Mathilde
last_name: Cordellier
citation:
ama: Huylmans AK, López Ezquerra A, Parsch J, Cordellier M. De novo transcriptome
assembly and sex-biased gene expression in the cyclical parthenogenetic Daphnia
galeata. Genome Biology and Evolution. 2016;8(10):3120-3139. doi:10.1093/gbe/evw221
apa: Huylmans, A. K., López Ezquerra, A., Parsch, J., & Cordellier, M. (2016).
De novo transcriptome assembly and sex-biased gene expression in the cyclical
parthenogenetic Daphnia galeata. Genome Biology and Evolution. Oxford University
Press. https://doi.org/10.1093/gbe/evw221
chicago: Huylmans, Ann K, Alberto López Ezquerra, John Parsch, and Mathilde Cordellier.
“De Novo Transcriptome Assembly and Sex-Biased Gene Expression in the Cyclical
Parthenogenetic Daphnia Galeata.” Genome Biology and Evolution. Oxford
University Press, 2016. https://doi.org/10.1093/gbe/evw221.
ieee: A. K. Huylmans, A. López Ezquerra, J. Parsch, and M. Cordellier, “De novo
transcriptome assembly and sex-biased gene expression in the cyclical parthenogenetic
Daphnia galeata,” Genome Biology and Evolution, vol. 8, no. 10. Oxford
University Press, pp. 3120–3139, 2016.
ista: Huylmans AK, López Ezquerra A, Parsch J, Cordellier M. 2016. De novo transcriptome
assembly and sex-biased gene expression in the cyclical parthenogenetic Daphnia
galeata. Genome Biology and Evolution. 8(10), 3120–3139.
mla: Huylmans, Ann K., et al. “De Novo Transcriptome Assembly and Sex-Biased Gene
Expression in the Cyclical Parthenogenetic Daphnia Galeata.” Genome Biology
and Evolution, vol. 8, no. 10, Oxford University Press, 2016, pp. 3120–39,
doi:10.1093/gbe/evw221.
short: A.K. Huylmans, A. López Ezquerra, J. Parsch, M. Cordellier, Genome Biology
and Evolution 8 (2016) 3120–3139.
date_created: 2018-12-11T11:51:24Z
date_published: 2016-10-01T00:00:00Z
date_updated: 2025-09-22T08:24:02Z
day: '01'
ddc:
- '576'
department:
- _id: BeVi
doi: 10.1093/gbe/evw221
external_id:
isi:
- '000386121300005'
file:
- access_level: open_access
checksum: 25c7adcb452d39d3b6343ff4b57a652d
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:12:06Z
date_updated: 2020-07-14T12:44:44Z
file_id: '4924'
file_name: IST-2016-663-v1+1_Genome_Biol_Evol-2016-Huylmans-3120-39.pdf
file_size: 1406265
relation: main_file
file_date_updated: 2020-07-14T12:44:44Z
fulldoi: https://doi.org/10.1093/gbe/evw221
has_accepted_license: '1'
intvolume: ' 8'
isi: 1
issue: '10'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 3120 - 3139
publication: Genome Biology and Evolution
publication_status: published
publisher: Oxford University Press
publist_id: '5940'
pubrep_id: '663'
quality_controlled: '1'
scopus_import: '1'
status: public
title: De novo transcriptome assembly and sex-biased gene expression in the cyclical
parthenogenetic Daphnia galeata
tmp:
image: /images/cc_by_nc.png
legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
short: CC BY-NC (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 8
year: '2016'
...
---
_id: '1330'
abstract:
- lang: eng
text: In this paper we investigate the existence of closed billiard trajectories
in not necessarily smooth convex bodies. In particular, we show that if a body
K ⊂ Rd has the property that the tangent cone of every non-smooth point q ∉ ∂K
is acute (in a certain sense), then there is a closed billiard trajectory in K.
acknowledgement: Supported by People Programme (Marie Curie Actions) of the European
Union’s Seventh Framework Programme (FP7/2007-2013) under REA grant agreement n°[291734].
Supported by the Russian Foundation for Basic Research grant 15-31-20403 (mol a
ved), by the Russian Foundation for Basic Research grant 15-01-99563 A, in part
by the Moebius Contest Foundation for Young Scientists, and in part by the Simons
Foundation.
article_processing_charge: No
arxiv: 1
author:
- first_name: Arseniy
full_name: Akopyan, Arseniy
id: 430D2C90-F248-11E8-B48F-1D18A9856A87
last_name: Akopyan
orcid: 0000-0002-2548-617X
- first_name: Alexey
full_name: Balitskiy, Alexey
last_name: Balitskiy
citation:
ama: Akopyan A, Balitskiy A. Billiards in convex bodies with acute angles. Israel
Journal of Mathematics. 2016;216(2):833-845. doi:10.1007/s11856-016-1429-z
apa: Akopyan, A., & Balitskiy, A. (2016). Billiards in convex bodies with acute
angles. Israel Journal of Mathematics. Springer. https://doi.org/10.1007/s11856-016-1429-z
chicago: Akopyan, Arseniy, and Alexey Balitskiy. “Billiards in Convex Bodies with
Acute Angles.” Israel Journal of Mathematics. Springer, 2016. https://doi.org/10.1007/s11856-016-1429-z.
ieee: A. Akopyan and A. Balitskiy, “Billiards in convex bodies with acute angles,”
Israel Journal of Mathematics, vol. 216, no. 2. Springer, pp. 833–845,
2016.
ista: Akopyan A, Balitskiy A. 2016. Billiards in convex bodies with acute angles.
Israel Journal of Mathematics. 216(2), 833–845.
mla: Akopyan, Arseniy, and Alexey Balitskiy. “Billiards in Convex Bodies with Acute
Angles.” Israel Journal of Mathematics, vol. 216, no. 2, Springer, 2016,
pp. 833–45, doi:10.1007/s11856-016-1429-z.
short: A. Akopyan, A. Balitskiy, Israel Journal of Mathematics 216 (2016) 833–845.
corr_author: '1'
date_created: 2018-12-11T11:51:24Z
date_published: 2016-10-15T00:00:00Z
date_updated: 2025-09-22T08:23:27Z
day: '15'
department:
- _id: HeEd
doi: 10.1007/s11856-016-1429-z
ec_funded: 1
external_id:
arxiv:
- '1506.06014'
isi:
- '000386356400012'
fulldoi: https://doi.org/10.1007/s11856-016-1429-z
intvolume: ' 216'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1506.06014
month: '10'
oa: 1
oa_version: Preprint
page: 833 - 845
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '291734'
name: International IST Postdoc Fellowship Programme
publication: Israel Journal of Mathematics
publication_status: published
publisher: Springer
publist_id: '5938'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Billiards in convex bodies with acute angles
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 216
year: '2016'
...
---
_id: '1331'
abstract:
- lang: eng
text: 'Cytokinin is a phytohormone that is well known for its roles in numerous
plant growth and developmental processes, yet it has also been linked to abiotic
stress response in a less defined manner. Arabidopsis (Arabidopsis thaliana) Cytokinin
Response Factor 6 (CRF6) is a cytokinin-responsive AP2/ERF-family transcription
factor that, through the cytokinin signaling pathway, plays a key role in the
inhibition of dark-induced senescence. CRF6 expression is also induced by oxidative
stress, and here we show a novel function for CRF6 in relation to oxidative stress
and identify downstream transcriptional targets of CRF6 that are repressed in
response to oxidative stress. Analysis of transcriptomic changes in wild-type
and crf6 mutant plants treated with H2O2 identified CRF6-dependent differentially
expressed transcripts, many of which were repressed rather than induced. Moreover,
many repressed genes also show decreased expression in 35S:CRF6 overexpressing
plants. Together, these findings suggest that CRF6 functions largely as a transcriptional
repressor. Interestingly, among the H2O2 repressed CRF6-dependent transcripts
was a set of five genes associated with cytokinin processes: (signaling) ARR6,
ARR9, ARR11, (biosynthesis) LOG7, and (transport) ABCG14. We have examined mutants
of these cytokinin-associated target genes to reveal novel connections to oxidative
stress. Further examination of CRF6-DNA interactions indicated that CRF6 may regulate
its targets both directly and indirectly. Together, this shows that CRF6 functions
during oxidative stress as a negative regulator to control this cytokinin-associated
module of CRF6- dependent genes and establishes a novel connection between cytokinin
and oxidative stress response.'
acknowledgement: "This work was financially supported by the following: The Alabama
Agricultural Experiment Station HATCH grants 370222-310010-2055 and 370225-310006-2055
for funding to P.J.Z., E.A.K, A.M.P., and A.M.R. P.J.Z. and E.A.K were supported
by an Auburn University Cellular and Molecular Biosciences Research Fellowship.
I.D.C. is a postdoctoral fellow of the Research Foundation Flanders (FWO) (FWO/PDO14/043)
and is also supported by FWO travel\r\ngrant 12N2415N. F.V.B. was supported by grants
from the Interuniversity Attraction Poles Programme (IUAP P7/29 MARS) initiated
by the Belgian Science Policy Office and Ghent University (Multidisciplinary Research
Partnership Biotechnology for a Sustainable Economy, grant 01MRB510W)."
article_processing_charge: No
article_type: original
author:
- first_name: Paul
full_name: Zwack, Paul
last_name: Zwack
- first_name: Inge
full_name: De Clercq, Inge
last_name: De Clercq
- first_name: Timothy
full_name: Howton, Timothy
last_name: Howton
- first_name: H Tucker
full_name: Hallmark, H Tucker
last_name: Hallmark
- first_name: Andrej
full_name: Hurny, Andrej
id: 4DC4AF46-F248-11E8-B48F-1D18A9856A87
last_name: Hurny
orcid: 0000-0003-3638-1426
- first_name: Erika
full_name: Keshishian, Erika
last_name: Keshishian
- first_name: Alyssa
full_name: Parish, Alyssa
last_name: Parish
- first_name: Eva
full_name: Benková, Eva
id: 38F4F166-F248-11E8-B48F-1D18A9856A87
last_name: Benková
orcid: 0000-0002-8510-9739
- first_name: M Shahid
full_name: Mukhtar, M Shahid
last_name: Mukhtar
- first_name: Frank
full_name: Van Breusegem, Frank
last_name: Van Breusegem
- first_name: Aaron
full_name: Rashotte, Aaron
last_name: Rashotte
citation:
ama: Zwack P, De Clercq I, Howton T, et al. Cytokinin response factor 6 represses
cytokinin-associated genes during oxidative stress. Plant Physiology. 2016;172(2):1249-1258.
doi:10.1104/pp.16.00415
apa: Zwack, P., De Clercq, I., Howton, T., Hallmark, H. T., Hurny, A., Keshishian,
E., … Rashotte, A. (2016). Cytokinin response factor 6 represses cytokinin-associated
genes during oxidative stress. Plant Physiology. American Society of Plant
Biologists. https://doi.org/10.1104/pp.16.00415
chicago: Zwack, Paul, Inge De Clercq, Timothy Howton, H Tucker Hallmark, Andrej
Hurny, Erika Keshishian, Alyssa Parish, et al. “Cytokinin Response Factor 6 Represses
Cytokinin-Associated Genes during Oxidative Stress.” Plant Physiology.
American Society of Plant Biologists, 2016. https://doi.org/10.1104/pp.16.00415.
ieee: P. Zwack et al., “Cytokinin response factor 6 represses cytokinin-associated
genes during oxidative stress,” Plant Physiology, vol. 172, no. 2. American
Society of Plant Biologists, pp. 1249–1258, 2016.
ista: Zwack P, De Clercq I, Howton T, Hallmark HT, Hurny A, Keshishian E, Parish
A, Benková E, Mukhtar MS, Van Breusegem F, Rashotte A. 2016. Cytokinin response
factor 6 represses cytokinin-associated genes during oxidative stress. Plant Physiology.
172(2), 1249–1258.
mla: Zwack, Paul, et al. “Cytokinin Response Factor 6 Represses Cytokinin-Associated
Genes during Oxidative Stress.” Plant Physiology, vol. 172, no. 2, American
Society of Plant Biologists, 2016, pp. 1249–58, doi:10.1104/pp.16.00415.
short: P. Zwack, I. De Clercq, T. Howton, H.T. Hallmark, A. Hurny, E. Keshishian,
A. Parish, E. Benková, M.S. Mukhtar, F. Van Breusegem, A. Rashotte, Plant Physiology
172 (2016) 1249–1258.
date_created: 2018-12-11T11:51:25Z
date_published: 2016-10-02T00:00:00Z
date_updated: 2026-06-18T17:30:26Z
day: '02'
ddc:
- '580'
department:
- _id: EvBe
doi: 10.1104/pp.16.00415
external_id:
isi:
- '000391147700047'
fulldoi: https://doi.org/10.1104/pp.16.00415
intvolume: ' 172'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1104/pp.16.00415
month: '10'
oa: 1
oa_version: Published Version
page: 1249 - 1258
publication: Plant Physiology
publication_identifier:
eissn:
- 1532-2548
issn:
- 0032-0889
publication_status: published
publisher: American Society of Plant Biologists
publist_id: '5937'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Cytokinin response factor 6 represses cytokinin-associated genes during oxidative
stress
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 172
year: '2016'
...
---
_id: '1332'
abstract:
- lang: eng
text: Antibiotic-sensitive and -resistant bacteria coexist in natural environments
with low, if detectable, antibiotic concentrations. Except possibly around localized
antibiotic sources, where resistance can provide a strong advantage, bacterial
fitness is dominated by stresses unaffected by resistance to the antibiotic. How
do such mixed and heterogeneous conditions influence the selective advantage or
disadvantage of antibiotic resistance? Here we find that sub-inhibitory levels
of tetracyclines potentiate selection for or against tetracycline resistance around
localized sources of almost any toxin or stress. Furthermore, certain stresses
generate alternating rings of selection for and against resistance around a localized
source of the antibiotic. In these conditions, localized antibiotic sources, even
at high strengths, can actually produce a net selection against resistance to
the antibiotic. Our results show that interactions between the effects of an antibiotic
and other stresses in inhomogeneous environments can generate pervasive, complex
patterns of selection both for and against antibiotic resistance.
acknowledgement: This work was partially supported by US National Institutes of Health
grant R01-GM081617, Israeli Centers of Research Excellence I-CORE Program ISF Grant
No. 152/11, and the European Research Council FP7 ERC Grant 281891.
article_number: '10333'
article_processing_charge: No
author:
- first_name: Remy P
full_name: Chait, Remy P
id: 3464AE84-F248-11E8-B48F-1D18A9856A87
last_name: Chait
orcid: 0000-0003-0876-3187
- first_name: Adam
full_name: Palmer, Adam
last_name: Palmer
- first_name: Idan
full_name: Yelin, Idan
last_name: Yelin
- first_name: Roy
full_name: Kishony, Roy
last_name: Kishony
citation:
ama: Chait RP, Palmer A, Yelin I, Kishony R. Pervasive selection for and against
antibiotic resistance in inhomogeneous multistress environments. Nature Communications.
2016;7. doi:10.1038/ncomms10333
apa: Chait, R. P., Palmer, A., Yelin, I., & Kishony, R. (2016). Pervasive selection
for and against antibiotic resistance in inhomogeneous multistress environments.
Nature Communications. Nature Publishing Group. https://doi.org/10.1038/ncomms10333
chicago: Chait, Remy P, Adam Palmer, Idan Yelin, and Roy Kishony. “Pervasive Selection
for and against Antibiotic Resistance in Inhomogeneous Multistress Environments.”
Nature Communications. Nature Publishing Group, 2016. https://doi.org/10.1038/ncomms10333.
ieee: R. P. Chait, A. Palmer, I. Yelin, and R. Kishony, “Pervasive selection for
and against antibiotic resistance in inhomogeneous multistress environments,”
Nature Communications, vol. 7. Nature Publishing Group, 2016.
ista: Chait RP, Palmer A, Yelin I, Kishony R. 2016. Pervasive selection for and
against antibiotic resistance in inhomogeneous multistress environments. Nature
Communications. 7, 10333.
mla: Chait, Remy P., et al. “Pervasive Selection for and against Antibiotic Resistance
in Inhomogeneous Multistress Environments.” Nature Communications, vol.
7, 10333, Nature Publishing Group, 2016, doi:10.1038/ncomms10333.
short: R.P. Chait, A. Palmer, I. Yelin, R. Kishony, Nature Communications 7 (2016).
date_created: 2018-12-11T11:51:25Z
date_published: 2016-01-20T00:00:00Z
date_updated: 2025-09-22T08:22:19Z
day: '20'
ddc:
- '570'
- '579'
department:
- _id: CaGu
- _id: GaTk
doi: 10.1038/ncomms10333
external_id:
isi:
- '000369021700002'
file:
- access_level: open_access
checksum: ef147bcbb8bd37e9079cf3ce06f5815d
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:13:52Z
date_updated: 2020-07-14T12:44:44Z
file_id: '5039'
file_name: IST-2016-662-v1+1_ncomms10333.pdf
file_size: 1844107
relation: main_file
file_date_updated: 2020-07-14T12:44:44Z
fulldoi: https://doi.org/10.1038/ncomms10333
has_accepted_license: '1'
intvolume: ' 7'
isi: 1
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
publication: Nature Communications
publication_status: published
publisher: Nature Publishing Group
publist_id: '5936'
pubrep_id: '662'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Pervasive selection for and against antibiotic resistance in inhomogeneous
multistress environments
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 7
year: '2016'
...
---
_id: '1333'
abstract:
- lang: eng
text: Social dilemmas force players to balance between personal and collective gain.
In many dilemmas, such as elected governments negotiating climate-change mitigation
measures, the decisions are made not by individual players but by their representatives.
However, the behaviour of representatives in social dilemmas has not been investigated
experimentally. Here inspired by the negotiations for greenhouse-gas emissions
reductions, we experimentally study a collective-risk social dilemma that involves
representatives deciding on behalf of their fellow group members. Representatives
can be re-elected or voted out after each consecutive collective-risk game. Selfish
players are preferentially elected and are hence found most frequently in the
"representatives" treatment. Across all treatments, we identify the
selfish players as extortioners. As predicted by our mathematical model, their
steadfast strategies enforce cooperation from fair players who finally compensate
almost completely the deficit caused by the extortionate co-players. Everybody
gains, but the extortionate representatives and their groups gain the most.
acknowledgement: We thank the students for participation; H.-J. Krambeck for writing
the software for the game; H. Arndt, T. Bakker, L. Becks, H. Brendelberger, S. Dobler
and T. Reusch for support; and the Max Planck Society for the Advancement of Science
for funding.
article_number: '10915'
article_processing_charge: No
author:
- first_name: Manfred
full_name: Milinski, Manfred
last_name: Milinski
- first_name: Christian
full_name: Hilbe, Christian
id: 2FDF8F3C-F248-11E8-B48F-1D18A9856A87
last_name: Hilbe
orcid: 0000-0001-5116-955X
- first_name: Dirk
full_name: Semmann, Dirk
last_name: Semmann
- first_name: Ralf
full_name: Sommerfeld, Ralf
last_name: Sommerfeld
- first_name: Jochem
full_name: Marotzke, Jochem
last_name: Marotzke
citation:
ama: Milinski M, Hilbe C, Semmann D, Sommerfeld R, Marotzke J. Humans choose representatives
who enforce cooperation in social dilemmas through extortion. Nature Communications.
2016;7. doi:10.1038/ncomms10915
apa: Milinski, M., Hilbe, C., Semmann, D., Sommerfeld, R., & Marotzke, J. (2016).
Humans choose representatives who enforce cooperation in social dilemmas through
extortion. Nature Communications. Nature Publishing Group. https://doi.org/10.1038/ncomms10915
chicago: Milinski, Manfred, Christian Hilbe, Dirk Semmann, Ralf Sommerfeld, and
Jochem Marotzke. “Humans Choose Representatives Who Enforce Cooperation in Social
Dilemmas through Extortion.” Nature Communications. Nature Publishing Group,
2016. https://doi.org/10.1038/ncomms10915.
ieee: M. Milinski, C. Hilbe, D. Semmann, R. Sommerfeld, and J. Marotzke, “Humans
choose representatives who enforce cooperation in social dilemmas through extortion,”
Nature Communications, vol. 7. Nature Publishing Group, 2016.
ista: Milinski M, Hilbe C, Semmann D, Sommerfeld R, Marotzke J. 2016. Humans choose
representatives who enforce cooperation in social dilemmas through extortion.
Nature Communications. 7, 10915.
mla: Milinski, Manfred, et al. “Humans Choose Representatives Who Enforce Cooperation
in Social Dilemmas through Extortion.” Nature Communications, vol. 7, 10915,
Nature Publishing Group, 2016, doi:10.1038/ncomms10915.
short: M. Milinski, C. Hilbe, D. Semmann, R. Sommerfeld, J. Marotzke, Nature Communications
7 (2016).
corr_author: '1'
date_created: 2018-12-11T11:51:25Z
date_published: 2016-03-07T00:00:00Z
date_updated: 2025-09-22T08:21:34Z
day: '07'
ddc:
- '519'
- '530'
- '599'
department:
- _id: KrCh
doi: 10.1038/ncomms10915
external_id:
isi:
- '000371720200001'
file:
- access_level: open_access
checksum: 9ea0d7ce59a555a1cb8353d5559407cb
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:10:44Z
date_updated: 2020-07-14T12:44:44Z
file_id: '4834'
file_name: IST-2016-661-v1+1_ncomms10915.pdf
file_size: 1432577
relation: main_file
file_date_updated: 2020-07-14T12:44:44Z
fulldoi: https://doi.org/10.1038/ncomms10915
has_accepted_license: '1'
intvolume: ' 7'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication: Nature Communications
publication_status: published
publisher: Nature Publishing Group
publist_id: '5935'
pubrep_id: '661'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Humans choose representatives who enforce cooperation in social dilemmas through
extortion
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 7
year: '2016'
...
---
_id: '1334'
abstract:
- lang: eng
text: Hippocampal neurons encode a cognitive map of space. These maps are thought
to be updated during learning and in response to changes in the environment through
activity-dependent synaptic plasticity. Here we examine how changes in activity
influence spatial coding in rats using halorhodopsin-mediated, spatially selective
optogenetic silencing. Halorhoposin stimulation leads to light-induced suppression
in many place cells and interneurons; some place cells increase their firing through
disinhibition, whereas some show no effect. We find that place fields of the unaffected
subpopulation remain stable. On the other hand, place fields of suppressed place
cells were unstable, showing remapping across sessions before and after optogenetic
inhibition. Disinhibited place cells had stable maps but sustained an elevated
firing rate. These findings suggest that place representation in the hippocampus
is constantly governed by activity-dependent processes, and that disinhibition
may provide a mechanism for rate remapping.
article_number: '11824'
article_processing_charge: No
author:
- first_name: Philipp
full_name: Schönenberger, Philipp
id: 3B9D816C-F248-11E8-B48F-1D18A9856A87
last_name: Schönenberger
- first_name: Joseph
full_name: O'Neill, Joseph
id: 426376DC-F248-11E8-B48F-1D18A9856A87
last_name: O'Neill
- first_name: Jozsef L
full_name: Csicsvari, Jozsef L
id: 3FA14672-F248-11E8-B48F-1D18A9856A87
last_name: Csicsvari
orcid: 0000-0002-5193-4036
citation:
ama: Schönenberger P, O’Neill J, Csicsvari JL. Activity dependent plasticity of
hippocampal place maps. Nature Communications. 2016;7. doi:10.1038/ncomms11824
apa: Schönenberger, P., O’Neill, J., & Csicsvari, J. L. (2016). Activity dependent
plasticity of hippocampal place maps. Nature Communications. Nature Publishing
Group. https://doi.org/10.1038/ncomms11824
chicago: Schönenberger, Philipp, Joseph O’Neill, and Jozsef L Csicsvari. “Activity
Dependent Plasticity of Hippocampal Place Maps.” Nature Communications.
Nature Publishing Group, 2016. https://doi.org/10.1038/ncomms11824.
ieee: P. Schönenberger, J. O’Neill, and J. L. Csicsvari, “Activity dependent plasticity
of hippocampal place maps,” Nature Communications, vol. 7. Nature Publishing
Group, 2016.
ista: Schönenberger P, O’Neill J, Csicsvari JL. 2016. Activity dependent plasticity
of hippocampal place maps. Nature Communications. 7, 11824.
mla: Schönenberger, Philipp, et al. “Activity Dependent Plasticity of Hippocampal
Place Maps.” Nature Communications, vol. 7, 11824, Nature Publishing Group,
2016, doi:10.1038/ncomms11824.
short: P. Schönenberger, J. O’Neill, J.L. Csicsvari, Nature Communications 7 (2016).
corr_author: '1'
date_created: 2018-12-11T11:51:26Z
date_published: 2016-06-10T00:00:00Z
date_updated: 2025-09-22T08:20:24Z
day: '10'
ddc:
- '570'
department:
- _id: JoCs
doi: 10.1038/ncomms11824
ec_funded: 1
external_id:
isi:
- '000378007300001'
file:
- access_level: open_access
checksum: e43307754abe65b840a21939fe163618
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:16:10Z
date_updated: 2020-07-14T12:44:44Z
file_id: '5196'
file_name: IST-2016-660-v1+1_ncomms11824.pdf
file_size: 1793846
relation: main_file
file_date_updated: 2020-07-14T12:44:44Z
fulldoi: https://doi.org/10.1038/ncomms11824
has_accepted_license: '1'
intvolume: ' 7'
isi: 1
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
project:
- _id: 257A4776-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '281511'
name: Memory-related information processing in neuronal circuits of the hippocampus
and entorhinal cortex
- _id: 257D4372-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: I2072-B27
name: Interneuron plasticity during spatial learning
publication: Nature Communications
publication_status: published
publisher: Nature Publishing Group
publist_id: '5934'
pubrep_id: '660'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Activity dependent plasticity of hippocampal place maps
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 7
year: '2016'
...
---
_id: '1335'
abstract:
- lang: eng
text: In this paper we review various automata-theoretic formalisms for expressing
quantitative properties. We start with finite-state Boolean automata that express
the traditional regular properties. We then consider weighted ω-automata that
can measure the average density of events, which finite-state Boolean automata
cannot. However, even weighted ω-automata cannot express basic performance properties
like average response time. We finally consider two formalisms of weighted ω-automata
with monitors, where the monitors are either (a) counters or (b) weighted automata
themselves. We present a translation result to establish that these two formalisms
are equivalent. Weighted ω-automata with monitors generalize weighted ω-automata,
and can express average response time property. They present a natural, robust,
and expressive framework for quantitative specifications, with important decidable
properties.
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
- first_name: Jan
full_name: Otop, Jan
id: 2FC5DA74-F248-11E8-B48F-1D18A9856A87
last_name: Otop
citation:
ama: 'Chatterjee K, Henzinger TA, Otop J. Quantitative monitor automata. In: Vol
9837. Springer; 2016:23-38. doi:10.1007/978-3-662-53413-7_2'
apa: 'Chatterjee, K., Henzinger, T. A., & Otop, J. (2016). Quantitative monitor
automata (Vol. 9837, pp. 23–38). Presented at the SAS: Static Analysis Symposium,
Edinburgh, United Kingdom: Springer. https://doi.org/10.1007/978-3-662-53413-7_2'
chicago: Chatterjee, Krishnendu, Thomas A Henzinger, and Jan Otop. “Quantitative
Monitor Automata,” 9837:23–38. Springer, 2016. https://doi.org/10.1007/978-3-662-53413-7_2.
ieee: 'K. Chatterjee, T. A. Henzinger, and J. Otop, “Quantitative monitor automata,”
presented at the SAS: Static Analysis Symposium, Edinburgh, United Kingdom, 2016,
vol. 9837, pp. 23–38.'
ista: 'Chatterjee K, Henzinger TA, Otop J. 2016. Quantitative monitor automata.
SAS: Static Analysis Symposium, LNCS, vol. 9837, 23–38.'
mla: Chatterjee, Krishnendu, et al. Quantitative Monitor Automata. Vol. 9837,
Springer, 2016, pp. 23–38, doi:10.1007/978-3-662-53413-7_2.
short: K. Chatterjee, T.A. Henzinger, J. Otop, in:, Springer, 2016, pp. 23–38.
conference:
end_date: 2016-09-10
location: Edinburgh, United Kingdom
name: 'SAS: Static Analysis Symposium'
start_date: 2016-09-08
corr_author: '1'
date_created: 2018-12-11T11:51:26Z
date_published: 2016-08-31T00:00:00Z
date_updated: 2025-09-22T08:19:49Z
day: '31'
department:
- _id: KrCh
- _id: ToHe
doi: 10.1007/978-3-662-53413-7_2
ec_funded: 1
external_id:
arxiv:
- '1604.06764'
isi:
- '000388924600002'
fulldoi: https://doi.org/10.1007/978-3-662-53413-7_2
intvolume: ' 9837'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1604.06764
month: '08'
oa: 1
oa_version: Preprint
page: 23 - 38
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S 11407_N23
name: Rigorous Systems Engineering
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: Z211
name: Formal methods for the design and analysis of complex systems
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '279307'
name: 'Quantitative Graph Games: Theory and Applications'
- _id: 25892FC0-B435-11E9-9278-68D0E5697425
grant_number: ICT15-003
name: Efficient Algorithms for Computer Aided Verification
publication_status: published
publisher: Springer
publist_id: '5932'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Quantitative monitor automata
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 9837
year: '2016'
...
---
OA_type: closed access
_id: '21099'
abstract:
- lang: eng
text: Quinoline‐based oligoamide foldamers have been identified as a potent class
of ligands for G‐quadruplex DNA. Their helical structure is thought to target
G‐quadruplex loops or grooves and not G‐tetrads. We report a co‐crystal structure
of the antiparallel hairpin dimeric DNA G‐quadruplex (G4T4G4)2 with tetramer 1a
helically folded oligo‐quinolinecarboxamide bearing cationic side chains—that
is consistent with this hypothesis. Multivalent foldamer-DNA interactions that
modify the packing of (G4T4G4)2 in the solid state are observed.
article_processing_charge: No
article_type: original
author:
- first_name: Pradeep K
full_name: Mandal, Pradeep K
id: 6a3def15-d4b4-11ef-9fa9-a24c1f545ec3
last_name: Mandal
orcid: 0000-0001-5996-956X
- first_name: Benoît
full_name: Baptiste, Benoît
last_name: Baptiste
- first_name: Béatrice
full_name: Langlois d'Estaintot, Béatrice
last_name: Langlois d'Estaintot
- first_name: Brice
full_name: Kauffmann, Brice
last_name: Kauffmann
- first_name: Ivan
full_name: Huc, Ivan
last_name: Huc
citation:
ama: Mandal PK, Baptiste B, Langlois d’Estaintot B, Kauffmann B, Huc I. Multivalent
interactions between an aromatic helical foldamer and a DNA G‐quadruplex in the
solid state. ChemBioChem. 2016;17(20):1911-1914. doi:10.1002/cbic.201600281
apa: Mandal, P. K., Baptiste, B., Langlois d’Estaintot, B., Kauffmann, B., &
Huc, I. (2016). Multivalent interactions between an aromatic helical foldamer
and a DNA G‐quadruplex in the solid state. ChemBioChem. Wiley. https://doi.org/10.1002/cbic.201600281
chicago: Mandal, Pradeep K, Benoît Baptiste, Béatrice Langlois d’Estaintot, Brice
Kauffmann, and Ivan Huc. “Multivalent Interactions between an Aromatic Helical
Foldamer and a DNA G‐quadruplex in the Solid State.” ChemBioChem. Wiley,
2016. https://doi.org/10.1002/cbic.201600281.
ieee: P. K. Mandal, B. Baptiste, B. Langlois d’Estaintot, B. Kauffmann, and I. Huc,
“Multivalent interactions between an aromatic helical foldamer and a DNA G‐quadruplex
in the solid state,” ChemBioChem, vol. 17, no. 20. Wiley, pp. 1911–1914,
2016.
ista: Mandal PK, Baptiste B, Langlois d’Estaintot B, Kauffmann B, Huc I. 2016. Multivalent
interactions between an aromatic helical foldamer and a DNA G‐quadruplex in the
solid state. ChemBioChem. 17(20), 1911–1914.
mla: Mandal, Pradeep K., et al. “Multivalent Interactions between an Aromatic Helical
Foldamer and a DNA G‐quadruplex in the Solid State.” ChemBioChem, vol.
17, no. 20, Wiley, 2016, pp. 1911–14, doi:10.1002/cbic.201600281.
short: P.K. Mandal, B. Baptiste, B. Langlois d’Estaintot, B. Kauffmann, I. Huc,
ChemBioChem 17 (2016) 1911–1914.
date_created: 2026-01-29T21:36:22Z
date_published: 2016-10-17T00:00:00Z
date_updated: 2026-02-23T09:21:50Z
day: '17'
doi: 10.1002/cbic.201600281
extern: '1'
fulldoi: https://doi.org/10.1002/cbic.201600281
has_accepted_license: '1'
intvolume: ' 17'
issue: '20'
language:
- iso: eng
month: '10'
oa_version: None
page: 1911-1914
publication: ChemBioChem
publication_identifier:
eissn:
- 1439-7633
issn:
- 1439-4227
publication_status: published
publisher: Wiley
quality_controlled: '1'
status: public
title: Multivalent interactions between an aromatic helical foldamer and a DNA G‐quadruplex
in the solid state
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 17
year: '2016'
...
---
OA_type: closed access
_id: '21100'
abstract:
- lang: eng
text: 'Using commercial screens for crystallization of biomolecules and taking advantage
of the use of racemic crystallography allowed the production of X-ray quality
single crystals and the elucidation at 1.08 Å resolution of the solid state structure
of a difficult target: the complex between glucopyranose and a water soluble macrocyclic
receptor equipped with dendritic multianionic solubilizing chains.'
article_processing_charge: No
article_type: original
author:
- first_name: Pradeep K
full_name: Mandal, Pradeep K
id: 6a3def15-d4b4-11ef-9fa9-a24c1f545ec3
last_name: Mandal
orcid: 0000-0001-5996-956X
- first_name: Brice
full_name: Kauffmann, Brice
last_name: Kauffmann
- first_name: Harry
full_name: Destecroix, Harry
last_name: Destecroix
- first_name: Yann
full_name: Ferrand, Yann
last_name: Ferrand
- first_name: Anthony P.
full_name: Davis, Anthony P.
last_name: Davis
- first_name: Ivan
full_name: Huc, Ivan
last_name: Huc
citation:
ama: Mandal PK, Kauffmann B, Destecroix H, Ferrand Y, Davis AP, Huc I. Crystal structure
of a complex between β-glucopyranose and a macrocyclic receptor with dendritic
multicharged water solubilizing chains. Chemical Communications. 2016;52(60):9355-9358.
doi:10.1039/c6cc04466b
apa: Mandal, P. K., Kauffmann, B., Destecroix, H., Ferrand, Y., Davis, A. P., &
Huc, I. (2016). Crystal structure of a complex between β-glucopyranose and a macrocyclic
receptor with dendritic multicharged water solubilizing chains. Chemical Communications.
Royal Society of Chemistry. https://doi.org/10.1039/c6cc04466b
chicago: Mandal, Pradeep K, Brice Kauffmann, Harry Destecroix, Yann Ferrand, Anthony
P. Davis, and Ivan Huc. “Crystal Structure of a Complex between β-Glucopyranose
and a Macrocyclic Receptor with Dendritic Multicharged Water Solubilizing Chains.”
Chemical Communications. Royal Society of Chemistry, 2016. https://doi.org/10.1039/c6cc04466b.
ieee: P. K. Mandal, B. Kauffmann, H. Destecroix, Y. Ferrand, A. P. Davis, and I.
Huc, “Crystal structure of a complex between β-glucopyranose and a macrocyclic
receptor with dendritic multicharged water solubilizing chains,” Chemical Communications,
vol. 52, no. 60. Royal Society of Chemistry, pp. 9355–9358, 2016.
ista: Mandal PK, Kauffmann B, Destecroix H, Ferrand Y, Davis AP, Huc I. 2016. Crystal
structure of a complex between β-glucopyranose and a macrocyclic receptor with
dendritic multicharged water solubilizing chains. Chemical Communications. 52(60),
9355–9358.
mla: Mandal, Pradeep K., et al. “Crystal Structure of a Complex between β-Glucopyranose
and a Macrocyclic Receptor with Dendritic Multicharged Water Solubilizing Chains.”
Chemical Communications, vol. 52, no. 60, Royal Society of Chemistry, 2016,
pp. 9355–58, doi:10.1039/c6cc04466b.
short: P.K. Mandal, B. Kauffmann, H. Destecroix, Y. Ferrand, A.P. Davis, I. Huc,
Chemical Communications 52 (2016) 9355–9358.
date_created: 2026-01-29T21:42:03Z
date_published: 2016-06-28T00:00:00Z
date_updated: 2026-02-23T09:18:46Z
day: '28'
doi: 10.1039/c6cc04466b
extern: '1'
fulldoi: https://doi.org/10.1039/c6cc04466b
has_accepted_license: '1'
intvolume: ' 52'
issue: '60'
language:
- iso: eng
month: '06'
oa_version: None
page: 9355-9358
publication: Chemical Communications
publication_identifier:
eissn:
- 1364-548X
issn:
- 1359-7345
publication_status: published
publisher: Royal Society of Chemistry
quality_controlled: '1'
status: public
title: Crystal structure of a complex between β-glucopyranose and a macrocyclic receptor
with dendritic multicharged water solubilizing chains
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 52
year: '2016'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '21101'
abstract:
- lang: eng
text: It has previously been shown that the use of racemic mixtures of naturally
chiral macromolecules such as protein and DNA can significantly aid the crystallogenesis
process, thereby addressing one of the major bottlenecks to structure determination
by X-ray crystallographic methods—that of crystal growth. Although previous studies
have provided convincing evidence of the applicability of the racemic crystallization
technique to DNA through the study of well-characterized DNA structures, we sought
to apply this method to a historically challenging DNA sequence. For this purpose
we chose a non-self-complementary DNA duplex containing the biologically-relevant
Pribnow box consensus sequence ‘TATAAT’. Four racemic crystal structures of this
previously un-crystallizable DNA target are reported (with resolutions in the
range of 1.65–2.3 Å), with further crystallographic studies and structural analysis
providing insight into the racemic crystallization process as well as structural
details of this highly pertinent DNA sequence.
article_processing_charge: No
article_type: original
author:
- first_name: Pradeep K
full_name: Mandal, Pradeep K
id: 6a3def15-d4b4-11ef-9fa9-a24c1f545ec3
last_name: Mandal
orcid: 0000-0001-5996-956X
- first_name: Gavin W.
full_name: Collie, Gavin W.
last_name: Collie
- first_name: Suresh C.
full_name: Srivastava, Suresh C.
last_name: Srivastava
- first_name: Brice
full_name: Kauffmann, Brice
last_name: Kauffmann
- first_name: Ivan
full_name: Huc, Ivan
last_name: Huc
citation:
ama: Mandal PK, Collie GW, Srivastava SC, Kauffmann B, Huc I. Structure elucidation
of the Pribnow box consensus promoter sequence by racemic DNA crystallography.
Nucleic Acids Research. 2016;44(12):5936-5943. doi:10.1093/nar/gkw367
apa: Mandal, P. K., Collie, G. W., Srivastava, S. C., Kauffmann, B., & Huc,
I. (2016). Structure elucidation of the Pribnow box consensus promoter sequence
by racemic DNA crystallography. Nucleic Acids Research. Oxford University
Press. https://doi.org/10.1093/nar/gkw367
chicago: Mandal, Pradeep K, Gavin W. Collie, Suresh C. Srivastava, Brice Kauffmann,
and Ivan Huc. “Structure Elucidation of the Pribnow Box Consensus Promoter Sequence
by Racemic DNA Crystallography.” Nucleic Acids Research. Oxford University
Press, 2016. https://doi.org/10.1093/nar/gkw367.
ieee: P. K. Mandal, G. W. Collie, S. C. Srivastava, B. Kauffmann, and I. Huc, “Structure
elucidation of the Pribnow box consensus promoter sequence by racemic DNA crystallography,”
Nucleic Acids Research, vol. 44, no. 12. Oxford University Press, pp. 5936–5943,
2016.
ista: Mandal PK, Collie GW, Srivastava SC, Kauffmann B, Huc I. 2016. Structure elucidation
of the Pribnow box consensus promoter sequence by racemic DNA crystallography.
Nucleic Acids Research. 44(12), 5936–5943.
mla: Mandal, Pradeep K., et al. “Structure Elucidation of the Pribnow Box Consensus
Promoter Sequence by Racemic DNA Crystallography.” Nucleic Acids Research,
vol. 44, no. 12, Oxford University Press, 2016, pp. 5936–43, doi:10.1093/nar/gkw367.
short: P.K. Mandal, G.W. Collie, S.C. Srivastava, B. Kauffmann, I. Huc, Nucleic
Acids Research 44 (2016) 5936–5943.
date_created: 2026-01-29T21:46:40Z
date_published: 2016-07-08T00:00:00Z
date_updated: 2026-02-23T09:16:14Z
day: '08'
ddc:
- '570'
doi: 10.1093/nar/gkw367
extern: '1'
fulldoi: https://doi.org/10.1093/nar/gkw367
has_accepted_license: '1'
intvolume: ' 44'
issue: '12'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1093/nar/gkw367
month: '07'
oa: 1
oa_version: Published Version
page: 5936-5943
publication: Nucleic Acids Research
publication_identifier:
eissn:
- 1362-4962
issn:
- 0305-1048
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
status: public
title: Structure elucidation of the Pribnow box consensus promoter sequence by racemic
DNA crystallography
tmp:
image: /images/cc_by_nc.png
legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
short: CC BY-NC (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 44
year: '2016'
...
---
OA_type: closed access
_id: '21522'
abstract:
- lang: eng
text: In this Letter, we demonstrate highly efficient, polarization-insensitive
planar lenses (metalenses) at red, green, and blue wavelengths (λ = 660, 532,
and 405 nm). Metalenses with numerical apertures (NA) of 0.85 and 0.6 and corresponding
efficiencies as high as 60% and 90% are achieved. These metalenses are less than
600 nm-thick and can focus incident light down to diffraction-limited spots as
small as ∼0.64λ and provide high-resolution imaging. In addition, the focal spots
are very symmetric with high Strehl ratios. The single step lithography and compatibility
with large-scale fabrication processes make metalenses highly promising for widespread
applications in imaging and spectroscopy.
article_processing_charge: No
article_type: original
author:
- first_name: M.
full_name: Khorasaninejad, M.
last_name: Khorasaninejad
- first_name: A. Y.
full_name: Zhu, A. Y.
last_name: Zhu
- first_name: Charles
full_name: Roques-Carmes, Charles
id: e2e68fc9-6505-11ef-a541-eb4e72cc3e82
last_name: Roques-Carmes
- first_name: W. T.
full_name: Chen, W. T.
last_name: Chen
- first_name: J.
full_name: Oh, J.
last_name: Oh
- first_name: I.
full_name: Mishra, I.
last_name: Mishra
- first_name: R. C.
full_name: Devlin, R. C.
last_name: Devlin
- first_name: F.
full_name: Capasso, F.
last_name: Capasso
citation:
ama: Khorasaninejad M, Zhu AY, Roques-Carmes C, et al. Polarization-insensitive
metalenses at visible wavelengths. Nano Letters. 2016;16(11):7229-7234.
doi:10.1021/acs.nanolett.6b03626
apa: Khorasaninejad, M., Zhu, A. Y., Roques-Carmes, C., Chen, W. T., Oh, J., Mishra,
I., … Capasso, F. (2016). Polarization-insensitive metalenses at visible wavelengths.
Nano Letters. American Chemical Society. https://doi.org/10.1021/acs.nanolett.6b03626
chicago: Khorasaninejad, M., A. Y. Zhu, Charles Roques-Carmes, W. T. Chen, J. Oh,
I. Mishra, R. C. Devlin, and F. Capasso. “Polarization-Insensitive Metalenses
at Visible Wavelengths.” Nano Letters. American Chemical Society, 2016.
https://doi.org/10.1021/acs.nanolett.6b03626.
ieee: M. Khorasaninejad et al., “Polarization-insensitive metalenses at visible
wavelengths,” Nano Letters, vol. 16, no. 11. American Chemical Society,
pp. 7229–7234, 2016.
ista: Khorasaninejad M, Zhu AY, Roques-Carmes C, Chen WT, Oh J, Mishra I, Devlin
RC, Capasso F. 2016. Polarization-insensitive metalenses at visible wavelengths.
Nano Letters. 16(11), 7229–7234.
mla: Khorasaninejad, M., et al. “Polarization-Insensitive Metalenses at Visible
Wavelengths.” Nano Letters, vol. 16, no. 11, American Chemical Society,
2016, pp. 7229–34, doi:10.1021/acs.nanolett.6b03626.
short: M. Khorasaninejad, A.Y. Zhu, C. Roques-Carmes, W.T. Chen, J. Oh, I. Mishra,
R.C. Devlin, F. Capasso, Nano Letters 16 (2016) 7229–7234.
date_created: 2026-03-30T12:22:47Z
date_published: 2016-10-24T00:00:00Z
date_updated: 2026-04-15T11:53:17Z
day: '24'
ddc:
- '530'
doi: 10.1021/acs.nanolett.6b03626
extern: '1'
external_id:
pmid:
- '27791380'
fulldoi: https://doi.org/10.1021/acs.nanolett.6b03626
intvolume: ' 16'
issue: '11'
keyword:
- Metasurface
- polarization-insensitive metalenses
- visible wavelength
- titanium dioxide
language:
- iso: eng
month: '10'
oa_version: None
page: 7229-7234
pmid: 1
publication: Nano Letters
publication_identifier:
eissn:
- 1530-6992
issn:
- 1530-6984
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Polarization-insensitive metalenses at visible wavelengths
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2016'
...
---
OA_type: closed access
_id: '21635'
abstract:
- lang: eng
text: We report high numerical aperture meta-lenses in the visible spectrum with
focal spots as small as 0.65λ. Meta-lenses are based on ultra-thin titanium dioxide
metasurface phase masks. They operate in transmission mode and are polarization-insensitive.
article_number: JW4A.63
article_processing_charge: No
author:
- first_name: M.
full_name: Khorasaninejad, M.
last_name: Khorasaninejad
- first_name: W. T.
full_name: Chen, W. T.
last_name: Chen
- first_name: A.
full_name: Zhu, A.
last_name: Zhu
- first_name: J.
full_name: Oh, J.
last_name: Oh
- first_name: Charles
full_name: Roques-Carmes, Charles
id: e2e68fc9-6505-11ef-a541-eb4e72cc3e82
last_name: Roques-Carmes
- first_name: I.
full_name: Mishra, I.
last_name: Mishra
- first_name: R. C.
full_name: Devlin, R. C.
last_name: Devlin
- first_name: F.
full_name: Capasso, F.
last_name: Capasso
citation:
ama: 'Khorasaninejad M, Chen WT, Zhu A, et al. High numerical aperture meta-lenses
at visible wavelengths. In: Frontiers in Optics 2016. Optica Publishing
Group; 2016. doi:10.1364/fio.2016.jw4a.63'
apa: 'Khorasaninejad, M., Chen, W. T., Zhu, A., Oh, J., Roques-Carmes, C., Mishra,
I., … Capasso, F. (2016). High numerical aperture meta-lenses at visible wavelengths.
In Frontiers in Optics 2016. Rochester, NY, United States: Optica Publishing
Group. https://doi.org/10.1364/fio.2016.jw4a.63'
chicago: Khorasaninejad, M., W. T. Chen, A. Zhu, J. Oh, Charles Roques-Carmes, I.
Mishra, R. C. Devlin, and F. Capasso. “High Numerical Aperture Meta-Lenses at
Visible Wavelengths.” In Frontiers in Optics 2016. Optica Publishing Group,
2016. https://doi.org/10.1364/fio.2016.jw4a.63.
ieee: M. Khorasaninejad et al., “High numerical aperture meta-lenses at visible
wavelengths,” in Frontiers in Optics 2016, Rochester, NY, United States,
2016.
ista: 'Khorasaninejad M, Chen WT, Zhu A, Oh J, Roques-Carmes C, Mishra I, Devlin
RC, Capasso F. 2016. High numerical aperture meta-lenses at visible wavelengths.
Frontiers in Optics 2016. FiO: Frontiers in Optics, JW4A.63.'
mla: Khorasaninejad, M., et al. “High Numerical Aperture Meta-Lenses at Visible
Wavelengths.” Frontiers in Optics 2016, JW4A.63, Optica Publishing Group,
2016, doi:10.1364/fio.2016.jw4a.63.
short: M. Khorasaninejad, W.T. Chen, A. Zhu, J. Oh, C. Roques-Carmes, I. Mishra,
R.C. Devlin, F. Capasso, in:, Frontiers in Optics 2016, Optica Publishing Group,
2016.
conference:
end_date: 2016-10-21
location: Rochester, NY, United States
name: 'FiO: Frontiers in Optics'
start_date: 2016-10-17
date_created: 2026-03-30T12:22:48Z
date_published: 2016-10-01T00:00:00Z
date_updated: 2026-05-05T07:04:29Z
day: '01'
doi: 10.1364/fio.2016.jw4a.63
extern: '1'
fulldoi: https://doi.org/10.1364/fio.2016.jw4a.63
language:
- iso: eng
month: '10'
oa_version: None
publication: Frontiers in Optics 2016
publication_identifier:
eisbn:
- '9781943580194'
issnl:
- 2162-2701
publication_status: published
publisher: Optica Publishing Group
quality_controlled: '1'
scopus_import: '1'
status: public
title: High numerical aperture meta-lenses at visible wavelengths
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
OA_type: closed access
_id: '21812'
abstract:
- lang: eng
text: 'We report a facile strategy to grow supramolecular copolymers on Au surfaces
by successively exposing a surface‐anchored monomer to solutions of oppositely
charged peptide comonomers. Charge regulation on the active chain end of the polymer
sufficiently slows down the kinetics of the self‐assembly process to produce kinetically
trapped copolymers at near‐neutral pH. We thereby achieve architectural control
at three levels: The β‐sheet sequences direct the polymerization away from the
surface, the height of the supramolecular copolymer brushes is well‐controlled
by the stepwise nature of the alternating copolymer growth, and 2D spatial resolution
is realized by using micropatterned initiating monomers. The programmable nature
of the resulting architectures renders this concept attractive for the development
of customized biomaterials or chiral interfaces for optoelectronics and sensor
applications.'
article_processing_charge: No
article_type: original
author:
- first_name: Hendrik
full_name: Frisch, Hendrik
last_name: Frisch
- first_name: Eva‐Corinna
full_name: Fritz, Eva‐Corinna
last_name: Fritz
- first_name: Friedrich J
full_name: Stricker, Friedrich J
id: 7aca2cfc-46cf-11f0-abd3-8c96b5186745
last_name: Stricker
- first_name: Lars
full_name: Schmüser, Lars
last_name: Schmüser
- first_name: Daniel
full_name: Spitzer, Daniel
last_name: Spitzer
- first_name: Tobias
full_name: Weidner, Tobias
last_name: Weidner
- first_name: Bart Jan
full_name: Ravoo, Bart Jan
last_name: Ravoo
- first_name: Pol
full_name: Besenius, Pol
last_name: Besenius
citation:
ama: Frisch H, Fritz E, Stricker FJ, et al. Kinetically controlled sequential growth
of surface‐grafted chiral supramolecular copolymers. Angewandte Chemie International
Edition. 2016;55(25):7242-7246. doi:10.1002/anie.201601048
apa: Frisch, H., Fritz, E., Stricker, F. J., Schmüser, L., Spitzer, D., Weidner,
T., … Besenius, P. (2016). Kinetically controlled sequential growth of surface‐grafted
chiral supramolecular copolymers. Angewandte Chemie International Edition.
Wiley. https://doi.org/10.1002/anie.201601048
chicago: Frisch, Hendrik, Eva‐Corinna Fritz, Friedrich J Stricker, Lars Schmüser,
Daniel Spitzer, Tobias Weidner, Bart Jan Ravoo, and Pol Besenius. “Kinetically
Controlled Sequential Growth of Surface‐grafted Chiral Supramolecular Copolymers.”
Angewandte Chemie International Edition. Wiley, 2016. https://doi.org/10.1002/anie.201601048.
ieee: H. Frisch et al., “Kinetically controlled sequential growth of surface‐grafted
chiral supramolecular copolymers,” Angewandte Chemie International Edition,
vol. 55, no. 25. Wiley, pp. 7242–7246, 2016.
ista: Frisch H, Fritz E, Stricker FJ, Schmüser L, Spitzer D, Weidner T, Ravoo BJ,
Besenius P. 2016. Kinetically controlled sequential growth of surface‐grafted
chiral supramolecular copolymers. Angewandte Chemie International Edition. 55(25),
7242–7246.
mla: Frisch, Hendrik, et al. “Kinetically Controlled Sequential Growth of Surface‐grafted
Chiral Supramolecular Copolymers.” Angewandte Chemie International Edition,
vol. 55, no. 25, Wiley, 2016, pp. 7242–46, doi:10.1002/anie.201601048.
short: H. Frisch, E. Fritz, F.J. Stricker, L. Schmüser, D. Spitzer, T. Weidner,
B.J. Ravoo, P. Besenius, Angewandte Chemie International Edition 55 (2016) 7242–7246.
date_created: 2026-05-06T10:51:04Z
date_published: 2016-06-13T00:00:00Z
date_updated: 2026-05-11T07:15:50Z
day: '13'
ddc:
- '540'
doi: 10.1002/anie.201601048
extern: '1'
external_id:
pmid:
- '26989886'
fulldoi: https://doi.org/10.1002/anie.201601048
intvolume: ' 55'
issue: '25'
language:
- iso: eng
month: '06'
oa_version: None
page: 7242-7246
pmid: 1
publication: Angewandte Chemie International Edition
publication_identifier:
eissn:
- 1521-3773
issn:
- 1433-7851
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Kinetically controlled sequential growth of surface‐grafted chiral supramolecular
copolymers
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 55
year: '2016'
...
---
_id: '21815'
abstract:
- lang: eng
text: A modular strategy for the synthesis of surface-confined supramolecular copolymers
is reported by P. Besenius, B. J. Ravoo, and co-workers in their Communication
on page 7242 ff. The sequential addition of aqueous solutions containing the anionic
or cationic comonomer enables the stepwise growth of alternating copolymers from
gold surfaces. Charge regulation passivates the growing chain end and yields kinetically
trapped chiral copolymers with a tunable height of 5–19 nm.
article_processing_charge: No
author:
- first_name: Hendrik
full_name: Frisch, Hendrik
last_name: Frisch
- first_name: Eva‐Corinna
full_name: Fritz, Eva‐Corinna
last_name: Fritz
- first_name: Friedrich J
full_name: Stricker, Friedrich J
id: 7aca2cfc-46cf-11f0-abd3-8c96b5186745
last_name: Stricker
- first_name: Lars
full_name: Schmüser, Lars
last_name: Schmüser
- first_name: Daniel
full_name: Spitzer, Daniel
last_name: Spitzer
- first_name: Tobias
full_name: Weidner, Tobias
last_name: Weidner
- first_name: Bart Jan
full_name: Ravoo, Bart Jan
last_name: Ravoo
- first_name: Pol
full_name: Besenius, Pol
last_name: Besenius
citation:
ama: 'Frisch H, Fritz E, Stricker FJ, et al. Inside Back Cover: Kinetically Controlled
Sequential Growth of Surface‐grafted Chiral Supramolecular Copolymers (Angew.
Chem. Int. Ed. 25/2016). Vol 55. Wiley; 2016:7009-7264. doi:10.1002/anie.201604416'
apa: 'Frisch, H., Fritz, E., Stricker, F. J., Schmüser, L., Spitzer, D., Weidner,
T., … Besenius, P. (2016). Inside back cover: Kinetically controlled sequential
growth of surface‐grafted chiral supramolecular Copolymers (Angew. Chem. Int.
Ed. 25/2016). Angewandte Chemie International Edition (Vol. 55, pp.
7009–7264). Wiley. https://doi.org/10.1002/anie.201604416'
chicago: 'Frisch, Hendrik, Eva‐Corinna Fritz, Friedrich J Stricker, Lars Schmüser,
Daniel Spitzer, Tobias Weidner, Bart Jan Ravoo, and Pol Besenius. Inside Back
Cover: Kinetically Controlled Sequential Growth of Surface‐grafted Chiral Supramolecular
Copolymers (Angew. Chem. Int. Ed. 25/2016). Angewandte Chemie International
Edition. Vol. 55. Wiley, 2016. https://doi.org/10.1002/anie.201604416.'
ieee: 'H. Frisch et al., Inside back cover: Kinetically controlled sequential
growth of surface‐grafted chiral supramolecular Copolymers (Angew. Chem. Int.
Ed. 25/2016), vol. 55, no. 25. Wiley, 2016, pp. 7009–7264.'
ista: 'Frisch H, Fritz E, Stricker FJ, Schmüser L, Spitzer D, Weidner T, Ravoo BJ,
Besenius P. 2016. Inside back cover: Kinetically controlled sequential growth
of surface‐grafted chiral supramolecular Copolymers (Angew. Chem. Int. Ed. 25/2016),
Wiley,p.'
mla: 'Frisch, Hendrik, et al. “Inside Back Cover: Kinetically Controlled Sequential
Growth of Surface‐grafted Chiral Supramolecular Copolymers (Angew. Chem. Int.
Ed. 25/2016).” Angewandte Chemie International Edition, vol. 55, no. 25,
Wiley, 2016, pp. 7009–264, doi:10.1002/anie.201604416.'
short: 'H. Frisch, E. Fritz, F.J. Stricker, L. Schmüser, D. Spitzer, T. Weidner,
B.J. Ravoo, P. Besenius, Inside Back Cover: Kinetically Controlled Sequential
Growth of Surface‐grafted Chiral Supramolecular Copolymers (Angew. Chem. Int.
Ed. 25/2016), Wiley, 2016.'
date_created: 2026-05-06T10:53:03Z
date_published: 2016-05-20T00:00:00Z
date_updated: 2026-05-12T08:07:49Z
day: '20'
ddc:
- '540'
doi: 10.1002/anie.201604416
extern: '1'
fulldoi: https://doi.org/10.1002/anie.201604416
intvolume: ' 55'
issue: '25'
language:
- iso: eng
month: '05'
oa_version: None
page: 7009-7264
publication: Angewandte Chemie International Edition
publication_identifier:
eissn:
- 1521-3773
issn:
- 1433-7851
publication_status: published
publisher: Wiley
status: public
title: 'Inside back cover: Kinetically controlled sequential growth of surface‐grafted
chiral supramolecular Copolymers (Angew. Chem. Int. Ed. 25/2016)'
type: other_academic_publication
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 55
year: '2016'
...
---
_id: '13385'
abstract:
- lang: eng
text: Novel light-responsive nanoparticles were synthesized by decorating the surfaces
of gold and silver nanoparticles with a nitrospiropyran molecular photoswitch.
Upon exposure to UV light in nonpolar solvents, these nanoparticles self-assembled
to afford spherical aggregates, which disassembled rapidly when the UV stimulus
was turned off. The sizes of these aggregates depended on the nanoparticle concentration,
and their lifetimes could be controlled by adjusting the surface concentration
of nitrospiropyran on the nanoparticles. The conformational flexibility of nitrospiropyran,
which was altered by modifying the structure of the background ligand, had a profound
impact on the self-assembly process. By coating the nanoparticles with a spiropyran
lacking the nitro group, a conceptually different self-assembly system, relying
on a reversible proton transfer, was realized. The resulting particles spontaneously
(in the dark) assembled into aggregates that could be readily disassembled upon
exposure to blue light.
article_processing_charge: No
article_type: original
author:
- first_name: Pintu K.
full_name: Kundu, Pintu K.
last_name: Kundu
- first_name: Sanjib
full_name: Das, Sanjib
last_name: Das
- first_name: Johannes
full_name: Ahrens, Johannes
last_name: Ahrens
- first_name: Rafal
full_name: Klajn, Rafal
id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
last_name: Klajn
citation:
ama: Kundu PK, Das S, Ahrens J, Klajn R. Controlling the lifetimes of dynamic nanoparticle
aggregates by spiropyran functionalization. Nanoscale. 2016;8(46):19280-19286.
doi:10.1039/c6nr05959g
apa: Kundu, P. K., Das, S., Ahrens, J., & Klajn, R. (2016). Controlling the
lifetimes of dynamic nanoparticle aggregates by spiropyran functionalization.
Nanoscale. Royal Society of Chemistry. https://doi.org/10.1039/c6nr05959g
chicago: Kundu, Pintu K., Sanjib Das, Johannes Ahrens, and Rafal Klajn. “Controlling
the Lifetimes of Dynamic Nanoparticle Aggregates by Spiropyran Functionalization.”
Nanoscale. Royal Society of Chemistry, 2016. https://doi.org/10.1039/c6nr05959g.
ieee: P. K. Kundu, S. Das, J. Ahrens, and R. Klajn, “Controlling the lifetimes of
dynamic nanoparticle aggregates by spiropyran functionalization,” Nanoscale,
vol. 8, no. 46. Royal Society of Chemistry, pp. 19280–19286, 2016.
ista: Kundu PK, Das S, Ahrens J, Klajn R. 2016. Controlling the lifetimes of dynamic
nanoparticle aggregates by spiropyran functionalization. Nanoscale. 8(46), 19280–19286.
mla: Kundu, Pintu K., et al. “Controlling the Lifetimes of Dynamic Nanoparticle
Aggregates by Spiropyran Functionalization.” Nanoscale, vol. 8, no. 46,
Royal Society of Chemistry, 2016, pp. 19280–86, doi:10.1039/c6nr05959g.
short: P.K. Kundu, S. Das, J. Ahrens, R. Klajn, Nanoscale 8 (2016) 19280–19286.
date_created: 2023-08-01T09:42:22Z
date_published: 2016-10-19T00:00:00Z
date_updated: 2024-10-14T12:16:21Z
day: '19'
doi: 10.1039/c6nr05959g
extern: '1'
external_id:
pmid:
- '27830865'
fulldoi: https://doi.org/10.1039/c6nr05959g
intvolume: ' 8'
issue: '46'
keyword:
- General Materials Science
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1039/C6NR05959G
month: '10'
oa: 1
oa_version: Published Version
page: 19280-19286
pmid: 1
publication: Nanoscale
publication_identifier:
eissn:
- 2040-3372
issn:
- 2040-3364
publication_status: published
publisher: Royal Society of Chemistry
quality_controlled: '1'
scopus_import: '1'
status: public
title: Controlling the lifetimes of dynamic nanoparticle aggregates by spiropyran
functionalization
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2016'
...
---
_id: '13386'
abstract:
- lang: eng
text: Azobenzenealkanethiols in self-assembled monolayers (SAMs) on Au(111) exhibit
reversible trans–cis photoisomerization when diluted with alkanethiol spacers.
Using these mixed SAMs, we show switching of the linear optical and second-harmonic
response. The effective switching of these surface optical properties relies on
a reasonably large cross section and a high photoisomerization yield as well as
a long lifetime of the metastable cis isomer. We quantified the switching process
by X-ray absorption spectroscopy. The cross sections for the trans–cis and cis–trans
photoisomerization with 365 and 455 nm light, respectively, are 1 order of magnitude
smaller than in solution. In vacuum, the 365 nm photostationary state comprises
50–74% of the molecules in the cis form, limited by their rapid thermal isomerization
back to the trans state. In contrast, the 455 nm photostationary state contains
nearly 100% trans-azobenzene. We determined time constants for the thermal cis–trans
isomerization of only a few minutes in vacuum and in a dry nitrogen atmosphere
but of more than 1 day in ambient air. Our results suggest that adventitious water
adsorbed on the surface of the SAM stabilizes the polar cis configuration of azobenzene
under ambient conditions. The back reaction rate constants differing by 2 orders
of magnitude underline the huge influence of the environment and, accordingly,
its importance when comparing various experiments.
article_processing_charge: No
article_type: original
author:
- first_name: Thomas
full_name: Moldt, Thomas
last_name: Moldt
- first_name: Daniel
full_name: Przyrembel, Daniel
last_name: Przyrembel
- first_name: Michael
full_name: Schulze, Michael
last_name: Schulze
- first_name: Wibke
full_name: Bronsch, Wibke
last_name: Bronsch
- first_name: Larissa
full_name: Boie, Larissa
last_name: Boie
- first_name: Daniel
full_name: Brete, Daniel
last_name: Brete
- first_name: Cornelius
full_name: Gahl, Cornelius
last_name: Gahl
- first_name: Rafal
full_name: Klajn, Rafal
id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
last_name: Klajn
- first_name: Petra
full_name: Tegeder, Petra
last_name: Tegeder
- first_name: Martin
full_name: Weinelt, Martin
last_name: Weinelt
citation:
ama: Moldt T, Przyrembel D, Schulze M, et al. Differing isomerization kinetics of
azobenzene-functionalized self-assembled monolayers in ambient air and in vacuum.
Langmuir. 2016;32(42):10795-10801. doi:10.1021/acs.langmuir.6b01690
apa: Moldt, T., Przyrembel, D., Schulze, M., Bronsch, W., Boie, L., Brete, D., …
Weinelt, M. (2016). Differing isomerization kinetics of azobenzene-functionalized
self-assembled monolayers in ambient air and in vacuum. Langmuir. American
Chemical Society. https://doi.org/10.1021/acs.langmuir.6b01690
chicago: Moldt, Thomas, Daniel Przyrembel, Michael Schulze, Wibke Bronsch, Larissa
Boie, Daniel Brete, Cornelius Gahl, Rafal Klajn, Petra Tegeder, and Martin Weinelt.
“Differing Isomerization Kinetics of Azobenzene-Functionalized Self-Assembled
Monolayers in Ambient Air and in Vacuum.” Langmuir. American Chemical Society,
2016. https://doi.org/10.1021/acs.langmuir.6b01690.
ieee: T. Moldt et al., “Differing isomerization kinetics of azobenzene-functionalized
self-assembled monolayers in ambient air and in vacuum,” Langmuir, vol.
32, no. 42. American Chemical Society, pp. 10795–10801, 2016.
ista: Moldt T, Przyrembel D, Schulze M, Bronsch W, Boie L, Brete D, Gahl C, Klajn
R, Tegeder P, Weinelt M. 2016. Differing isomerization kinetics of azobenzene-functionalized
self-assembled monolayers in ambient air and in vacuum. Langmuir. 32(42), 10795–10801.
mla: Moldt, Thomas, et al. “Differing Isomerization Kinetics of Azobenzene-Functionalized
Self-Assembled Monolayers in Ambient Air and in Vacuum.” Langmuir, vol.
32, no. 42, American Chemical Society, 2016, pp. 10795–801, doi:10.1021/acs.langmuir.6b01690.
short: T. Moldt, D. Przyrembel, M. Schulze, W. Bronsch, L. Boie, D. Brete, C. Gahl,
R. Klajn, P. Tegeder, M. Weinelt, Langmuir 32 (2016) 10795–10801.
date_created: 2023-08-01T09:42:37Z
date_published: 2016-10-25T00:00:00Z
date_updated: 2023-08-07T12:27:06Z
day: '25'
doi: 10.1021/acs.langmuir.6b01690
extern: '1'
external_id:
pmid:
- '27681851'
fulldoi: https://doi.org/10.1021/acs.langmuir.6b01690
intvolume: ' 32'
issue: '42'
keyword:
- Electrochemistry
- Spectroscopy
- Surfaces and Interfaces
- Condensed Matter Physics
- General Materials Science
language:
- iso: eng
month: '10'
oa_version: None
page: 10795-10801
pmid: 1
publication: Langmuir
publication_identifier:
eissn:
- 1520-5827
issn:
- 0743-7463
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Differing isomerization kinetics of azobenzene-functionalized self-assembled
monolayers in ambient air and in vacuum
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 32
year: '2016'
...