---
_id: '2944'
abstract:
- lang: eng
  text: 'We propose a two-step procedure for estimating multiple migration rates in
    an approximate Bayesian computation (ABC) framework, accounting for global nuisance
    parameters. The approach is not limited to migration, but generally of interest
    for inference problems with multiple parameters and a modular structure (e.g.
    independent sets of demes or loci). We condition on a known, but complex demographic
    model of a spatially subdivided population, motivated by the reintroduction of
    Alpine ibex (Capra ibex) into Switzerland. In the first step, the global parameters
    ancestral mutation rate and male mating skew have been estimated for the whole
    population in Aeschbacher et al. (Genetics 2012; 192: 1027). In the second step,
    we estimate in this study the migration rates independently for clusters of demes
    putatively connected by migration. For large clusters (many migration rates),
    ABC faces the problem of too many summary statistics. We therefore assess by simulation
    if estimation per pair of demes is a valid alternative. We find that the trade-off
    between reduced dimensionality for the pairwise estimation on the one hand and
    lower accuracy due to the assumption of pairwise independence on the other depends
    on the number of migration rates to be inferred: the accuracy of the pairwise
    approach increases with the number of parameters, relative to the joint estimation
    approach. To distinguish between low and zero migration, we perform ABC-type model
    comparison between a model with migration and one without. Applying the approach
    to microsatellite data from Alpine ibex, we find no evidence for substantial gene
    flow via migration, except for one pair of demes in one direction.'
acknowledged_ssus:
- _id: ScienComp
acknowledgement: This study has made use of the computational resources provided by
  IST Austria and the Edinburgh Compute and Data Facility (ECDF; http://www.ecdf.ed.ac.uk).
  The ECDF is partially supported by the eDIKT initiative (http://www.edikt.org.uk).
  S.A. acknowledges financial support by IST Austria, the Janggen-Pöhn Foundation,
  St. Gallen, the Roche Research Foundation, Basel, the University of Edinburgh in
  the form of a Torrance Studentship, and the Austrian Science Fund (FWF P21305-N13).
article_processing_charge: No
author:
- first_name: Simon
  full_name: Aeschbacher, Simon
  id: 2D35326E-F248-11E8-B48F-1D18A9856A87
  last_name: Aeschbacher
- first_name: Andreas
  full_name: Futschik, Andreas
  last_name: Futschik
- first_name: Mark
  full_name: Beaumont, Mark
  last_name: Beaumont
citation:
  ama: 'Aeschbacher S, Futschik A, Beaumont M. Approximate Bayesian computation for
    modular inference problems with many parameters: the example of migration rates.
    . <i>Molecular Ecology</i>. 2013;22(4):987-1002. doi:<a href="https://doi.org/10.1111/mec.12165">10.1111/mec.12165</a>'
  apa: 'Aeschbacher, S., Futschik, A., &#38; Beaumont, M. (2013). Approximate Bayesian
    computation for modular inference problems with many parameters: the example of
    migration rates. . <i>Molecular Ecology</i>. Wiley-Blackwell. <a href="https://doi.org/10.1111/mec.12165">https://doi.org/10.1111/mec.12165</a>'
  chicago: 'Aeschbacher, Simon, Andreas Futschik, and Mark Beaumont. “Approximate
    Bayesian Computation for Modular Inference Problems with Many Parameters: The
    Example of Migration Rates. .” <i>Molecular Ecology</i>. Wiley-Blackwell, 2013.
    <a href="https://doi.org/10.1111/mec.12165">https://doi.org/10.1111/mec.12165</a>.'
  ieee: 'S. Aeschbacher, A. Futschik, and M. Beaumont, “Approximate Bayesian computation
    for modular inference problems with many parameters: the example of migration
    rates. ,” <i>Molecular Ecology</i>, vol. 22, no. 4. Wiley-Blackwell, pp. 987–1002,
    2013.'
  ista: 'Aeschbacher S, Futschik A, Beaumont M. 2013. Approximate Bayesian computation
    for modular inference problems with many parameters: the example of migration
    rates. . Molecular Ecology. 22(4), 987–1002.'
  mla: 'Aeschbacher, Simon, et al. “Approximate Bayesian Computation for Modular Inference
    Problems with Many Parameters: The Example of Migration Rates. .” <i>Molecular
    Ecology</i>, vol. 22, no. 4, Wiley-Blackwell, 2013, pp. 987–1002, doi:<a href="https://doi.org/10.1111/mec.12165">10.1111/mec.12165</a>.'
  short: S. Aeschbacher, A. Futschik, M. Beaumont, Molecular Ecology 22 (2013) 987–1002.
corr_author: '1'
date_created: 2018-12-11T12:00:28Z
date_published: 2013-02-01T00:00:00Z
date_updated: 2025-09-29T13:25:36Z
day: '01'
department:
- _id: NiBa
doi: 10.1111/mec.12165
external_id:
  isi:
  - '000314220900008'
intvolume: '        22'
isi: 1
issue: '4'
language:
- iso: eng
month: '02'
oa_version: None
page: 987 - 1002
publication: Molecular Ecology
publication_status: published
publisher: Wiley-Blackwell
publist_id: '3788'
quality_controlled: '1'
related_material:
  record:
  - id: '9758'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: 'Approximate Bayesian computation for modular inference problems with many
  parameters: the example of migration rates. '
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 22
year: '2013'
...
---
_id: '2948'
abstract:
- lang: eng
  text: 'Many visual datasets are traditionally used to analyze the performance of
    different learning techniques. The evaluation is usually done within each dataset,
    therefore it is questionable if such results are a reliable indicator of true
    generalization ability. We propose here an algorithm to exploit the existing data
    resources when learning on a new multiclass problem. Our main idea is to identify
    an image representation that decomposes orthogonally into two subspaces: a part
    specific to each dataset, and a part generic to, and therefore shared between,
    all the considered source sets. This allows us to use the generic representation
    as un-biased reference knowledge for a novel classification task. By casting the
    method in the multi-view setting, we also make it possible to use different features
    for different databases. We call the algorithm MUST, Multitask Unaligned Shared
    knowledge Transfer. Through extensive experiments on five public datasets, we
    show that MUST consistently improves the cross-datasets generalization performance.'
acknowledgement: This work was supported by the PASCAL 2 Network of Excellence (TT)
  and by the Newton International Fellowship (NQ)
alternative_title:
- LNCS
author:
- first_name: Tatiana
  full_name: Tommasi, Tatiana
  last_name: Tommasi
- first_name: Novi
  full_name: Quadrianto, Novi
  last_name: Quadrianto
- first_name: Barbara
  full_name: Caputo, Barbara
  last_name: Caputo
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
citation:
  ama: 'Tommasi T, Quadrianto N, Caputo B, Lampert C. Beyond dataset bias: Multi-task
    unaligned shared knowledge transfer. 2013;7724:1-15. doi:<a href="https://doi.org/10.1007/978-3-642-37331-2_1">10.1007/978-3-642-37331-2_1</a>'
  apa: 'Tommasi, T., Quadrianto, N., Caputo, B., &#38; Lampert, C. (2013). Beyond
    dataset bias: Multi-task unaligned shared knowledge transfer. Presented at the
    ACCV: Asian Conference on Computer Vision, Daejeon, Korea: Springer. <a href="https://doi.org/10.1007/978-3-642-37331-2_1">https://doi.org/10.1007/978-3-642-37331-2_1</a>'
  chicago: 'Tommasi, Tatiana, Novi Quadrianto, Barbara Caputo, and Christoph Lampert.
    “Beyond Dataset Bias: Multi-Task Unaligned Shared Knowledge Transfer.” Lecture
    Notes in Computer Science. Springer, 2013. <a href="https://doi.org/10.1007/978-3-642-37331-2_1">https://doi.org/10.1007/978-3-642-37331-2_1</a>.'
  ieee: 'T. Tommasi, N. Quadrianto, B. Caputo, and C. Lampert, “Beyond dataset bias:
    Multi-task unaligned shared knowledge transfer,” vol. 7724. Springer, pp. 1–15,
    2013.'
  ista: 'Tommasi T, Quadrianto N, Caputo B, Lampert C. 2013. Beyond dataset bias:
    Multi-task unaligned shared knowledge transfer. 7724, 1–15.'
  mla: 'Tommasi, Tatiana, et al. <i>Beyond Dataset Bias: Multi-Task Unaligned Shared
    Knowledge Transfer</i>. Vol. 7724, Springer, 2013, pp. 1–15, doi:<a href="https://doi.org/10.1007/978-3-642-37331-2_1">10.1007/978-3-642-37331-2_1</a>.'
  short: T. Tommasi, N. Quadrianto, B. Caputo, C. Lampert, 7724 (2013) 1–15.
conference:
  end_date: 2012-11-09
  location: Daejeon, Korea
  name: 'ACCV: Asian Conference on Computer Vision'
  start_date: 2012-11-05
date_created: 2018-12-11T12:00:30Z
date_published: 2013-04-04T00:00:00Z
date_updated: 2020-08-11T10:09:54Z
day: '04'
ddc:
- '000'
department:
- _id: ChLa
doi: 10.1007/978-3-642-37331-2_1
file:
- access_level: open_access
  checksum: a0a7234a89e2192af655b0d0ae3bf445
  content_type: application/pdf
  creator: dernst
  date_created: 2019-01-22T14:03:11Z
  date_updated: 2020-07-14T12:45:55Z
  file_id: '5874'
  file_name: 2012_ACCV_Tommasi.pdf
  file_size: 1513620
  relation: main_file
file_date_updated: 2020-07-14T12:45:55Z
has_accepted_license: '1'
intvolume: '      7724'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Submitted Version
page: 1 - 15
publication_status: published
publisher: Springer
publist_id: '3784'
quality_controlled: '1'
scopus_import: 1
series_title: Lecture Notes in Computer Science
status: public
title: 'Beyond dataset bias: Multi-task unaligned shared knowledge transfer'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7724
year: '2013'
...
---
_id: '2973'
abstract:
- lang: eng
  text: "Efficient zero-knowledge proofs of knowledge (ZK-PoK) are basic building
    blocks of many practical cryptographic applications such as identification schemes,
    group signatures, and secure multiparty computation. Currently, first applications
    that critically rely on ZK-PoKs are being deployed in the real world. The most
    prominent example is Direct Anonymous Attestation (DAA), which was adopted by
    the Trusted Computing Group (TCG) and implemented as one of the functionalities
    of the cryptographic Trusted Platform Module (TPM) chip.\n\nImplementing systems
    using ZK-PoK turns out to be challenging, since ZK-PoK are, loosely speaking,
    significantly more complex than standard crypto primitives, such as encryption
    and signature schemes. As a result, implementation cycles of ZK-PoK are time-consuming
    and error-prone, in particular for developers with minor or no cryptographic skills.
    \n\nIn this paper we report on our ongoing and future research vision with the
    goal to bring ZK-PoK to practice by making them accessible to crypto and security
    engineers. To this end we are developing compilers and related tools that support
    and partially automate the design, implementation, verification and secure implementation
    of ZK-PoK protocols."
acknowledgement: This work is being performed within the FP7 EU project CACE (Computer
  Aided Cryptography Engineering).
alternative_title:
- LNCS
author:
- first_name: Endre
  full_name: Bangerter, Endre
  last_name: Bangerter
- first_name: Stefania
  full_name: Barzan, Stefania
  last_name: Barzan
- first_name: Stephan
  full_name: Stephan Krenn
  id: 329FCCF0-F248-11E8-B48F-1D18A9856A87
  last_name: Krenn
  orcid: 0000-0003-2835-9093
- first_name: Ahmad
  full_name: Sadeghi, Ahmad-Reza
  last_name: Sadeghi
- first_name: Thomas
  full_name: Schneider, Thomas
  last_name: Schneider
- first_name: Joe
  full_name: Tsay, Joe-Kai
  last_name: Tsay
citation:
  ama: 'Bangerter E, Barzan S, Krenn S, Sadeghi A, Schneider T, Tsay J. Bringing Zero-Knowledge
    Proofs of Knowledge to Practice. In: Christianson B, Malcolm J, Matyas V, Roe
    M, eds. Vol 7028. Springer; 2013:51-62. doi:<a href="https://doi.org/10.1007/978-3-642-36213-2_9">10.1007/978-3-642-36213-2_9</a>'
  apa: 'Bangerter, E., Barzan, S., Krenn, S., Sadeghi, A., Schneider, T., &#38; Tsay,
    J. (2013). Bringing Zero-Knowledge Proofs of Knowledge to Practice. In B. Christianson,
    J. Malcolm, V. Matyas, &#38; M. Roe (Eds.) (Vol. 7028, pp. 51–62). Presented at
    the SPW: Security Protocols Workshop, Springer. <a href="https://doi.org/10.1007/978-3-642-36213-2_9">https://doi.org/10.1007/978-3-642-36213-2_9</a>'
  chicago: Bangerter, Endre, Stefania Barzan, Stephan Krenn, Ahmad Sadeghi, Thomas
    Schneider, and Joe Tsay. “Bringing Zero-Knowledge Proofs of Knowledge to Practice.”
    edited by Bruce Christianson, James Malcolm, Vashek Matyas, and Michael Roe, 7028:51–62.
    Springer, 2013. <a href="https://doi.org/10.1007/978-3-642-36213-2_9">https://doi.org/10.1007/978-3-642-36213-2_9</a>.
  ieee: 'E. Bangerter, S. Barzan, S. Krenn, A. Sadeghi, T. Schneider, and J. Tsay,
    “Bringing Zero-Knowledge Proofs of Knowledge to Practice,” presented at the SPW:
    Security Protocols Workshop, 2013, vol. 7028, pp. 51–62.'
  ista: 'Bangerter E, Barzan S, Krenn S, Sadeghi A, Schneider T, Tsay J. 2013. Bringing
    Zero-Knowledge Proofs of Knowledge to Practice. SPW: Security Protocols Workshop,
    LNCS, vol. 7028, 51–62.'
  mla: Bangerter, Endre, et al. <i>Bringing Zero-Knowledge Proofs of Knowledge to
    Practice</i>. Edited by Bruce Christianson et al., vol. 7028, Springer, 2013,
    pp. 51–62, doi:<a href="https://doi.org/10.1007/978-3-642-36213-2_9">10.1007/978-3-642-36213-2_9</a>.
  short: E. Bangerter, S. Barzan, S. Krenn, A. Sadeghi, T. Schneider, J. Tsay, in:,
    B. Christianson, J. Malcolm, V. Matyas, M. Roe (Eds.), Springer, 2013, pp. 51–62.
conference:
  name: 'SPW: Security Protocols Workshop'
date_created: 2018-12-11T12:00:38Z
date_published: 2013-01-08T00:00:00Z
date_updated: 2021-01-12T07:40:10Z
day: '08'
doi: 10.1007/978-3-642-36213-2_9
editor:
- first_name: Bruce
  full_name: Christianson, Bruce
  last_name: Christianson
- first_name: James
  full_name: Malcolm, James A.
  last_name: Malcolm
- first_name: Vashek
  full_name: Matyas, Vashek
  last_name: Matyas
- first_name: Michael
  full_name: Roe, Michael
  last_name: Roe
extern: 1
intvolume: '      7028'
main_file_link:
- open_access: '1'
  url: http://eprint.iacr.org/2009/211.pdf
month: '01'
oa: 1
page: 51 - 62
publication_status: published
publisher: Springer
publist_id: '3732'
quality_controlled: 0
status: public
title: Bringing Zero-Knowledge Proofs of Knowledge to Practice
type: conference
volume: 7028
year: '2013'
...
---
_id: '3116'
abstract:
- lang: eng
  text: Multithreaded programs coordinate their interaction through synchronization
    primitives like mutexes and semaphores, which are managed by an OS-provided resource
    manager. We propose algorithms for the automatic construction of code-aware resource
    managers for multithreaded embedded applications. Such managers use knowledge
    about the structure and resource usage (mutex and semaphore usage) of the threads
    to guarantee deadlock freedom and progress while managing resources in an efficient
    way. Our algorithms compute managers as winning strategies in certain infinite
    games, and produce a compact code description of these strategies. We have implemented
    the algorithms in the tool Cynthesis. Given a multithreaded program in C, the
    tool produces C code implementing a code-aware resource manager. We show in experiments
    that Cynthesis produces compact resource managers within a few minutes on a set
    of embedded benchmarks with up to 6 threads. © 2012 Springer Science+Business
    Media, LLC.
acknowledgement: This research was supported in part by the National Science Foundation
  CAREER award CCR-0132780, by the ONR grant N00014-02-1-0671, by the National Science
  Foundation grants CCR-0427202 and CCR-0234690, and by the ARP award TO.030.MM.D.
article_processing_charge: No
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Luca
  full_name: De Alfaro, Luca
  last_name: De Alfaro
- first_name: Marco
  full_name: Faella, Marco
  last_name: Faella
- first_name: Ritankar
  full_name: Majumdar, Ritankar
  last_name: Majumdar
- first_name: Vishwanath
  full_name: Raman, Vishwanath
  last_name: Raman
citation:
  ama: Chatterjee K, De Alfaro L, Faella M, Majumdar R, Raman V. Code aware resource
    management. <i>Formal Methods in System Design</i>. 2013;42(2):142-174. doi:<a
    href="https://doi.org/10.1007/s10703-012-0170-4">10.1007/s10703-012-0170-4</a>
  apa: Chatterjee, K., De Alfaro, L., Faella, M., Majumdar, R., &#38; Raman, V. (2013).
    Code aware resource management. <i>Formal Methods in System Design</i>. Springer.
    <a href="https://doi.org/10.1007/s10703-012-0170-4">https://doi.org/10.1007/s10703-012-0170-4</a>
  chicago: Chatterjee, Krishnendu, Luca De Alfaro, Marco Faella, Ritankar Majumdar,
    and Vishwanath Raman. “Code Aware Resource Management.” <i>Formal Methods in System
    Design</i>. Springer, 2013. <a href="https://doi.org/10.1007/s10703-012-0170-4">https://doi.org/10.1007/s10703-012-0170-4</a>.
  ieee: K. Chatterjee, L. De Alfaro, M. Faella, R. Majumdar, and V. Raman, “Code aware
    resource management,” <i>Formal Methods in System Design</i>, vol. 42, no. 2.
    Springer, pp. 142–174, 2013.
  ista: Chatterjee K, De Alfaro L, Faella M, Majumdar R, Raman V. 2013. Code aware
    resource management. Formal Methods in System Design. 42(2), 142–174.
  mla: Chatterjee, Krishnendu, et al. “Code Aware Resource Management.” <i>Formal
    Methods in System Design</i>, vol. 42, no. 2, Springer, 2013, pp. 142–74, doi:<a
    href="https://doi.org/10.1007/s10703-012-0170-4">10.1007/s10703-012-0170-4</a>.
  short: K. Chatterjee, L. De Alfaro, M. Faella, R. Majumdar, V. Raman, Formal Methods
    in System Design 42 (2013) 142–174.
date_created: 2018-12-11T12:01:29Z
date_published: 2013-04-01T00:00:00Z
date_updated: 2025-09-29T13:24:54Z
day: '01'
department:
- _id: KrCh
doi: 10.1007/s10703-012-0170-4
external_id:
  isi:
  - '000316677500002'
intvolume: '        42'
isi: 1
issue: '2'
language:
- iso: eng
month: '04'
oa_version: None
page: 142 - 174
publication: Formal Methods in System Design
publication_status: published
publisher: Springer
publist_id: '3583'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Code aware resource management
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 42
year: '2013'
...
---
_id: '3261'
abstract:
- lang: eng
  text: Cells in a developing embryo have no direct way of &quot;measuring&quot; their
    physical position. Through a variety of processes, however, the expression levels
    of multiple genes come to be correlated with position, and these expression levels
    thus form a code for &quot;positional information.&quot; We show how to measure
    this information, in bits, using the gap genes in the Drosophila embryo as an
    example. Individual genes carry nearly two bits of information, twice as much
    as expected if the expression patterns consisted only of on/off domains separated
    by sharp boundaries. Taken together, four gap genes carry enough information to
    define a cell's location with an error bar of ~1% along the anterior-posterior
    axis of the embryo. This precision is nearly enough for each cell to have a unique
    identity, which is the maximum information the system can use, and is nearly constant
    along the length of the embryo. We argue that this constancy is a signature of
    optimality in the transmission of information from primary morphogen inputs to
    the output of the gap gene network.
article_processing_charge: No
author:
- first_name: Julien
  full_name: Dubuis, Julien
  last_name: Dubuis
- first_name: Gasper
  full_name: Tkacik, Gasper
  id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
  last_name: Tkacik
  orcid: 0000-0002-6699-1455
- first_name: Eric
  full_name: Wieschaus, Eric
  last_name: Wieschaus
- first_name: Thomas
  full_name: Gregor, Thomas
  last_name: Gregor
- first_name: William
  full_name: Bialek, William
  last_name: Bialek
citation:
  ama: Dubuis J, Tkačik G, Wieschaus E, Gregor T, Bialek W. Positional information,
    in bits. <i>PNAS</i>. 2013;110(41):16301-16308. doi:<a href="https://doi.org/10.1073/pnas.1315642110">10.1073/pnas.1315642110</a>
  apa: Dubuis, J., Tkačik, G., Wieschaus, E., Gregor, T., &#38; Bialek, W. (2013).
    Positional information, in bits. <i>PNAS</i>. National Academy of Sciences. <a
    href="https://doi.org/10.1073/pnas.1315642110">https://doi.org/10.1073/pnas.1315642110</a>
  chicago: Dubuis, Julien, Gašper Tkačik, Eric Wieschaus, Thomas Gregor, and William
    Bialek. “Positional Information, in Bits.” <i>PNAS</i>. National Academy of Sciences,
    2013. <a href="https://doi.org/10.1073/pnas.1315642110">https://doi.org/10.1073/pnas.1315642110</a>.
  ieee: J. Dubuis, G. Tkačik, E. Wieschaus, T. Gregor, and W. Bialek, “Positional
    information, in bits,” <i>PNAS</i>, vol. 110, no. 41. National Academy of Sciences,
    pp. 16301–16308, 2013.
  ista: Dubuis J, Tkačik G, Wieschaus E, Gregor T, Bialek W. 2013. Positional information,
    in bits. PNAS. 110(41), 16301–16308.
  mla: Dubuis, Julien, et al. “Positional Information, in Bits.” <i>PNAS</i>, vol.
    110, no. 41, National Academy of Sciences, 2013, pp. 16301–08, doi:<a href="https://doi.org/10.1073/pnas.1315642110">10.1073/pnas.1315642110</a>.
  short: J. Dubuis, G. Tkačik, E. Wieschaus, T. Gregor, W. Bialek, PNAS 110 (2013)
    16301–16308.
date_created: 2018-12-11T12:02:19Z
date_published: 2013-10-08T00:00:00Z
date_updated: 2025-09-29T13:24:21Z
day: '08'
ddc:
- '570'
department:
- _id: GaTk
doi: 10.1073/pnas.1315642110
external_id:
  isi:
  - '000325395600021'
  pmid:
  - '24089448'
file:
- access_level: open_access
  checksum: ecd859fe52a562193027d428b5524a8d
  content_type: application/pdf
  creator: dernst
  date_created: 2019-01-22T13:53:23Z
  date_updated: 2020-07-14T12:46:06Z
  file_id: '5873'
  file_name: 2013_PNAS_Dubuis.pdf
  file_size: 1670548
  relation: main_file
file_date_updated: 2020-07-14T12:46:06Z
has_accepted_license: '1'
intvolume: '       110'
isi: 1
issue: '41'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 16301 - 16308
pmid: 1
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '3387'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Positional information, in bits
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 110
year: '2013'
...
---
_id: '331'
abstract:
- lang: eng
  text: We report a procedure to prepare highly monodisperse copper telluride nanocubes,
    nanoplates, and nanorods. The procedure is based on the reaction of a copper salt
    with trioctylphosphine telluride in the presence of lithium bis(trimethylsilyl)amide
    and oleylamine. CuTe nanocrystals display a strong near-infrared optical absorption
    associated with localized surface plasmon resonances. We exploit this plasmon
    resonance for the design of surface-enhanced Raman scattering sensors for unconventional
    optical probes. Furthermore, we also report here our preliminary analysis of the
    use of CuTe nanocrystals as cytotoxic and photothermal agents.
article_processing_charge: No
article_type: original
author:
- first_name: Wenhua
  full_name: Li, Wenhua
  last_name: Li
- first_name: Reza
  full_name: Zamani, Reza
  last_name: Zamani
- first_name: Pilar
  full_name: Rivera Gil, Pilar
  last_name: Rivera Gil
- first_name: Beatriz
  full_name: Pelaz, Beatriz
  last_name: Pelaz
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Doris
  full_name: Cadavid, Doris
  last_name: Cadavid
- first_name: Alexey
  full_name: Shavel, Alexey
  last_name: Shavel
- first_name: Ramon
  full_name: Alvarez Puebla, Ramon
  last_name: Alvarez Puebla
- first_name: Wolfgang
  full_name: Parak, Wolfgang
  last_name: Parak
- first_name: Jordi
  full_name: Arbiol, Jordi
  last_name: Arbiol
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
citation:
  ama: 'Li W, Zamani R, Rivera Gil P, et al. CuTe nanocrystals: Shape and size control,
    plasmonic properties, and use as SERS probes and photothermal agents. <i>Journal
    of the American Chemical Society</i>. 2013;135(19):7098-7101. doi:<a href="https://doi.org/10.1021/ja401428e">10.1021/ja401428e</a>'
  apa: 'Li, W., Zamani, R., Rivera Gil, P., Pelaz, B., Ibáñez, M., Cadavid, D., …
    Cabot, A. (2013). CuTe nanocrystals: Shape and size control, plasmonic properties,
    and use as SERS probes and photothermal agents. <i>Journal of the American Chemical
    Society</i>. ACS. <a href="https://doi.org/10.1021/ja401428e">https://doi.org/10.1021/ja401428e</a>'
  chicago: 'Li, Wenhua, Reza Zamani, Pilar Rivera Gil, Beatriz Pelaz, Maria Ibáñez,
    Doris Cadavid, Alexey Shavel, et al. “CuTe Nanocrystals: Shape and Size Control,
    Plasmonic Properties, and Use as SERS Probes and Photothermal Agents.” <i>Journal
    of the American Chemical Society</i>. ACS, 2013. <a href="https://doi.org/10.1021/ja401428e">https://doi.org/10.1021/ja401428e</a>.'
  ieee: 'W. Li <i>et al.</i>, “CuTe nanocrystals: Shape and size control, plasmonic
    properties, and use as SERS probes and photothermal agents,” <i>Journal of the
    American Chemical Society</i>, vol. 135, no. 19. ACS, pp. 7098–7101, 2013.'
  ista: 'Li W, Zamani R, Rivera Gil P, Pelaz B, Ibáñez M, Cadavid D, Shavel A, Alvarez
    Puebla R, Parak W, Arbiol J, Cabot A. 2013. CuTe nanocrystals: Shape and size
    control, plasmonic properties, and use as SERS probes and photothermal agents.
    Journal of the American Chemical Society. 135(19), 7098–7101.'
  mla: 'Li, Wenhua, et al. “CuTe Nanocrystals: Shape and Size Control, Plasmonic Properties,
    and Use as SERS Probes and Photothermal Agents.” <i>Journal of the American Chemical
    Society</i>, vol. 135, no. 19, ACS, 2013, pp. 7098–101, doi:<a href="https://doi.org/10.1021/ja401428e">10.1021/ja401428e</a>.'
  short: W. Li, R. Zamani, P. Rivera Gil, B. Pelaz, M. Ibáñez, D. Cadavid, A. Shavel,
    R. Alvarez Puebla, W. Parak, J. Arbiol, A. Cabot, Journal of the American Chemical
    Society 135 (2013) 7098–7101.
date_created: 2018-12-11T11:45:51Z
date_published: 2013-04-30T00:00:00Z
date_updated: 2021-01-12T07:42:33Z
day: '30'
doi: 10.1021/ja401428e
extern: '1'
intvolume: '       135'
issue: '19'
language:
- iso: eng
month: '04'
oa_version: None
page: 7098 - 7101
publication: Journal of the American Chemical Society
publication_status: published
publisher: ACS
publist_id: '7521'
quality_controlled: '1'
status: public
title: 'CuTe nanocrystals: Shape and size control, plasmonic properties, and use as
  SERS probes and photothermal agents'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 135
year: '2013'
...
---
_id: '3321'
author:
- first_name: Novi
  full_name: Quadrianto, Novi
  last_name: Quadrianto
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
citation:
  ama: 'Quadrianto N, Lampert C. Kernel based learning. In: Dubitzky W, Wolkenhauer
    O, Cho K, Yokota H, eds. <i>Encyclopedia of Systems Biology</i>. Vol 3. Springer;
    2013:1069-1069. doi:<a href="https://doi.org/10.1007/978-1-4419-9863-7_604">10.1007/978-1-4419-9863-7_604</a>'
  apa: Quadrianto, N., &#38; Lampert, C. (2013). Kernel based learning. In W. Dubitzky,
    O. Wolkenhauer, K. Cho, &#38; H. Yokota (Eds.), <i>Encyclopedia of Systems Biology</i>
    (Vol. 3, pp. 1069–1069). Springer. <a href="https://doi.org/10.1007/978-1-4419-9863-7_604">https://doi.org/10.1007/978-1-4419-9863-7_604</a>
  chicago: Quadrianto, Novi, and Christoph Lampert. “Kernel Based Learning.” In <i>Encyclopedia
    of Systems Biology</i>, edited by Werner Dubitzky, Olaf Wolkenhauer, Kwang Cho,
    and Hiroki Yokota, 3:1069–1069. Springer, 2013. <a href="https://doi.org/10.1007/978-1-4419-9863-7_604">https://doi.org/10.1007/978-1-4419-9863-7_604</a>.
  ieee: N. Quadrianto and C. Lampert, “Kernel based learning,” in <i>Encyclopedia
    of Systems Biology</i>, vol. 3, W. Dubitzky, O. Wolkenhauer, K. Cho, and H. Yokota,
    Eds. Springer, 2013, pp. 1069–1069.
  ista: 'Quadrianto N, Lampert C. 2013.Kernel based learning. In: Encyclopedia of
    Systems Biology. vol. 3, 1069–1069.'
  mla: Quadrianto, Novi, and Christoph Lampert. “Kernel Based Learning.” <i>Encyclopedia
    of Systems Biology</i>, edited by Werner Dubitzky et al., vol. 3, Springer, 2013,
    pp. 1069–1069, doi:<a href="https://doi.org/10.1007/978-1-4419-9863-7_604">10.1007/978-1-4419-9863-7_604</a>.
  short: N. Quadrianto, C. Lampert, in:, W. Dubitzky, O. Wolkenhauer, K. Cho, H. Yokota
    (Eds.), Encyclopedia of Systems Biology, Springer, 2013, pp. 1069–1069.
date_created: 2018-12-11T12:02:39Z
date_published: 2013-01-01T00:00:00Z
date_updated: 2021-01-12T07:42:38Z
day: '01'
department:
- _id: ChLa
doi: 10.1007/978-1-4419-9863-7_604
editor:
- first_name: Werner
  full_name: Dubitzky, Werner
  last_name: Dubitzky
- first_name: Olaf
  full_name: Wolkenhauer, Olaf
  last_name: Wolkenhauer
- first_name: Kwang
  full_name: Cho, Kwang
  last_name: Cho
- first_name: Hiroki
  full_name: Yokota, Hiroki
  last_name: Yokota
intvolume: '         3'
language:
- iso: eng
month: '01'
oa_version: None
page: 1069 - 1069
publication: Encyclopedia of Systems Biology
publication_status: published
publisher: Springer
publist_id: '3314'
quality_controlled: '1'
status: public
title: Kernel based learning
type: encyclopedia_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 3
year: '2013'
...
---
_id: '342'
abstract:
- lang: eng
  text: Morphology is a key parameter in the design of novel nanocrystals and nanomaterials
    with controlled functional properties. Here, we demonstrate the potential of foreign
    metal ions to tune the morphology of colloidal semiconductor nanoparticles. We
    illustrate the underlying mechanism by preparing copper selenide nanocubes in
    the presence of Al ions. We further characterize the plasmonic properties of the
    obtained nanocrystals and demonstrate their potential as a platform to produce
    cubic nanoparticles with different composition by cation exchange. © 2013 American
    Chemical Society.
acknowledgement: The research was supported by the European Regional Development Funds.
  M.I. thanks the Spanish MICINN for her Ph.D. grant. J.A. and R.Z. also acknowledge
  MAT2010-15138.
article_processing_charge: No
article_type: original
author:
- first_name: Wenhua
  full_name: Li, Wenhua
  last_name: Li
- first_name: Reza
  full_name: Zamani, Reza
  last_name: Zamani
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Doris
  full_name: Cadavid, Doris
  last_name: Cadavid
- first_name: Alexey
  full_name: Shavel, Alexey
  last_name: Shavel
- first_name: Joan
  full_name: Morante, Joan
  last_name: Morante
- first_name: Jordi
  full_name: Arbiol, Jordi
  last_name: Arbiol
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
citation:
  ama: 'Li W, Zamani R, Ibáñez M, et al. Metal ions to control the morphology of semiconductor
    nanoparticles: Copper selenide nanocubes. <i>Journal of the American Chemical
    Society</i>. 2013;135(12):4664-4667. doi:<a href="https://doi.org/10.1021/ja400472m">10.1021/ja400472m</a>'
  apa: 'Li, W., Zamani, R., Ibáñez, M., Cadavid, D., Shavel, A., Morante, J., … Cabot,
    A. (2013). Metal ions to control the morphology of semiconductor nanoparticles:
    Copper selenide nanocubes. <i>Journal of the American Chemical Society</i>. American
    Chemical Society. <a href="https://doi.org/10.1021/ja400472m">https://doi.org/10.1021/ja400472m</a>'
  chicago: 'Li, Wenhua, Reza Zamani, Maria Ibáñez, Doris Cadavid, Alexey Shavel, Joan
    Morante, Jordi Arbiol, and Andreu Cabot. “Metal Ions to Control the Morphology
    of Semiconductor Nanoparticles: Copper Selenide Nanocubes.” <i>Journal of the
    American Chemical Society</i>. American Chemical Society, 2013. <a href="https://doi.org/10.1021/ja400472m">https://doi.org/10.1021/ja400472m</a>.'
  ieee: 'W. Li <i>et al.</i>, “Metal ions to control the morphology of semiconductor
    nanoparticles: Copper selenide nanocubes,” <i>Journal of the American Chemical
    Society</i>, vol. 135, no. 12. American Chemical Society, pp. 4664–4667, 2013.'
  ista: 'Li W, Zamani R, Ibáñez M, Cadavid D, Shavel A, Morante J, Arbiol J, Cabot
    A. 2013. Metal ions to control the morphology of semiconductor nanoparticles:
    Copper selenide nanocubes. Journal of the American Chemical Society. 135(12),
    4664–4667.'
  mla: 'Li, Wenhua, et al. “Metal Ions to Control the Morphology of Semiconductor
    Nanoparticles: Copper Selenide Nanocubes.” <i>Journal of the American Chemical
    Society</i>, vol. 135, no. 12, American Chemical Society, 2013, pp. 4664–67, doi:<a
    href="https://doi.org/10.1021/ja400472m">10.1021/ja400472m</a>.'
  short: W. Li, R. Zamani, M. Ibáñez, D. Cadavid, A. Shavel, J. Morante, J. Arbiol,
    A. Cabot, Journal of the American Chemical Society 135 (2013) 4664–4667.
date_created: 2018-12-11T11:45:55Z
date_published: 2013-03-07T00:00:00Z
date_updated: 2021-01-12T07:43:21Z
day: '07'
doi: 10.1021/ja400472m
extern: '1'
intvolume: '       135'
issue: '12'
language:
- iso: eng
month: '03'
oa_version: None
page: 4664 - 4667
publication: Journal of the American Chemical Society
publication_status: published
publisher: American Chemical Society
publist_id: '7482'
quality_controlled: '1'
status: public
title: 'Metal ions to control the morphology of semiconductor nanoparticles: Copper
  selenide nanocubes'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 135
year: '2013'
...
---
_id: '13405'
abstract:
- lang: eng
  text: We report a method for preparing electrode–molecule–electrode junctions that
    incorporate nonsymmetrical azobenzene dithiols. Our approach is based on sequential
    deprotection of thiol moieties originally carrying two different protecting groups.
    The azobenzene derivatives retained their switching properties within monolayers
    and permitted the photocontrol of electrical conductance.
article_processing_charge: No
article_type: original
author:
- first_name: Tal
  full_name: Ely, Tal
  last_name: Ely
- first_name: Sanjib
  full_name: Das, Sanjib
  last_name: Das
- first_name: Wenjie
  full_name: Li, Wenjie
  last_name: Li
- first_name: Pintu
  full_name: Kundu, Pintu
  last_name: Kundu
- first_name: Einat
  full_name: Tirosh, Einat
  last_name: Tirosh
- first_name: David
  full_name: Cahen, David
  last_name: Cahen
- first_name: Ayelet
  full_name: Vilan, Ayelet
  last_name: Vilan
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
citation:
  ama: Ely T, Das S, Li W, et al. Photocontrol of electrical conductance with a nonsymmetrical
    azobenzene dithiol. <i>Synlett</i>. 2013;24(18):2370-2374. doi:<a href="https://doi.org/10.1055/s-0033-1340087">10.1055/s-0033-1340087</a>
  apa: Ely, T., Das, S., Li, W., Kundu, P., Tirosh, E., Cahen, D., … Klajn, R. (2013).
    Photocontrol of electrical conductance with a nonsymmetrical azobenzene dithiol.
    <i>Synlett</i>. Georg Thieme Verlag. <a href="https://doi.org/10.1055/s-0033-1340087">https://doi.org/10.1055/s-0033-1340087</a>
  chicago: Ely, Tal, Sanjib Das, Wenjie Li, Pintu Kundu, Einat Tirosh, David Cahen,
    Ayelet Vilan, and Rafal Klajn. “Photocontrol of Electrical Conductance with a
    Nonsymmetrical Azobenzene Dithiol.” <i>Synlett</i>. Georg Thieme Verlag, 2013.
    <a href="https://doi.org/10.1055/s-0033-1340087">https://doi.org/10.1055/s-0033-1340087</a>.
  ieee: T. Ely <i>et al.</i>, “Photocontrol of electrical conductance with a nonsymmetrical
    azobenzene dithiol,” <i>Synlett</i>, vol. 24, no. 18. Georg Thieme Verlag, pp.
    2370–2374, 2013.
  ista: Ely T, Das S, Li W, Kundu P, Tirosh E, Cahen D, Vilan A, Klajn R. 2013. Photocontrol
    of electrical conductance with a nonsymmetrical azobenzene dithiol. Synlett. 24(18),
    2370–2374.
  mla: Ely, Tal, et al. “Photocontrol of Electrical Conductance with a Nonsymmetrical
    Azobenzene Dithiol.” <i>Synlett</i>, vol. 24, no. 18, Georg Thieme Verlag, 2013,
    pp. 2370–74, doi:<a href="https://doi.org/10.1055/s-0033-1340087">10.1055/s-0033-1340087</a>.
  short: T. Ely, S. Das, W. Li, P. Kundu, E. Tirosh, D. Cahen, A. Vilan, R. Klajn,
    Synlett 24 (2013) 2370–2374.
date_created: 2023-08-01T09:47:17Z
date_published: 2013-10-22T00:00:00Z
date_updated: 2024-10-14T12:21:03Z
day: '22'
doi: 10.1055/s-0033-1340087
extern: '1'
intvolume: '        24'
issue: '18'
keyword:
- Organic Chemistry
language:
- iso: eng
month: '10'
oa_version: None
page: 2370-2374
publication: Synlett
publication_identifier:
  eissn:
  - 1437-2096
  issn:
  - 0936-5214
publication_status: published
publisher: Georg Thieme Verlag
quality_controlled: '1'
scopus_import: '1'
status: public
title: Photocontrol of electrical conductance with a nonsymmetrical azobenzene dithiol
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 24
year: '2013'
...
---
_id: '13406'
abstract:
- lang: eng
  text: Dual-responsive nanoparticles are designed by functionalizing magnetic cores
    with light-responsive ligands. These materials respond to both light and magnetic
    fields and can be assembled into various higher-order structures, depending on
    the relative contributions of these two stimuli.
article_processing_charge: No
article_type: original
author:
- first_name: Sanjib
  full_name: Das, Sanjib
  last_name: Das
- first_name: Priyadarshi
  full_name: Ranjan, Priyadarshi
  last_name: Ranjan
- first_name: Pradipta Sankar
  full_name: Maiti, Pradipta Sankar
  last_name: Maiti
- first_name: Gurvinder
  full_name: Singh, Gurvinder
  last_name: Singh
- first_name: Gregory
  full_name: Leitus, Gregory
  last_name: Leitus
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
citation:
  ama: Das S, Ranjan P, Maiti PS, Singh G, Leitus G, Klajn R. Dual-responsive nanoparticles
    and their self-assembly. <i>Advanced Materials</i>. 2013;25(3):422-426. doi:<a
    href="https://doi.org/10.1002/adma.201201734">10.1002/adma.201201734</a>
  apa: Das, S., Ranjan, P., Maiti, P. S., Singh, G., Leitus, G., &#38; Klajn, R. (2013).
    Dual-responsive nanoparticles and their self-assembly. <i>Advanced Materials</i>.
    Wiley. <a href="https://doi.org/10.1002/adma.201201734">https://doi.org/10.1002/adma.201201734</a>
  chicago: Das, Sanjib, Priyadarshi Ranjan, Pradipta Sankar Maiti, Gurvinder Singh,
    Gregory Leitus, and Rafal Klajn. “Dual-Responsive Nanoparticles and Their Self-Assembly.”
    <i>Advanced Materials</i>. Wiley, 2013. <a href="https://doi.org/10.1002/adma.201201734">https://doi.org/10.1002/adma.201201734</a>.
  ieee: S. Das, P. Ranjan, P. S. Maiti, G. Singh, G. Leitus, and R. Klajn, “Dual-responsive
    nanoparticles and their self-assembly,” <i>Advanced Materials</i>, vol. 25, no.
    3. Wiley, pp. 422–426, 2013.
  ista: Das S, Ranjan P, Maiti PS, Singh G, Leitus G, Klajn R. 2013. Dual-responsive
    nanoparticles and their self-assembly. Advanced Materials. 25(3), 422–426.
  mla: Das, Sanjib, et al. “Dual-Responsive Nanoparticles and Their Self-Assembly.”
    <i>Advanced Materials</i>, vol. 25, no. 3, Wiley, 2013, pp. 422–26, doi:<a href="https://doi.org/10.1002/adma.201201734">10.1002/adma.201201734</a>.
  short: S. Das, P. Ranjan, P.S. Maiti, G. Singh, G. Leitus, R. Klajn, Advanced Materials
    25 (2013) 422–426.
date_created: 2023-08-01T09:47:30Z
date_published: 2013-01-18T00:00:00Z
date_updated: 2024-10-14T12:21:16Z
day: '18'
doi: 10.1002/adma.201201734
extern: '1'
external_id:
  pmid:
  - '22933327'
intvolume: '        25'
issue: '3'
keyword:
- Mechanical Engineering
- Mechanics of Materials
- General Materials Science
language:
- iso: eng
month: '01'
oa_version: None
page: 422-426
pmid: 1
publication: Advanced Materials
publication_identifier:
  issn:
  - 0935-9648
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Dual-responsive nanoparticles and their self-assembly
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 25
year: '2013'
...
---
_id: '1374'
abstract:
- lang: eng
  text: 'We study two-player zero-sum games over infinite-state graphs equipped with
    ωB and finitary conditions. Our first contribution is about the strategy complexity,
    i.e the memory required for winning strategies: we prove that over general infinite-state
    graphs, memoryless strategies are sufficient for finitary Büchi, and finite-memory
    suffices for finitary parity games. We then study pushdown games with boundedness
    conditions, with two contributions. First we prove a collapse result for pushdown
    games with ωB-conditions, implying the decidability of solving these games. Second
    we consider pushdown games with finitary parity along with stack boundedness conditions,
    and show that solving these games is EXPTIME-complete.'
alternative_title:
- LIPIcs
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Nathanaël
  full_name: Fijalkow, Nathanaël
  last_name: Fijalkow
citation:
  ama: 'Chatterjee K, Fijalkow N. Infinite-state games with finitary conditions. In:
    <i>22nd EACSL Annual Conference on Computer Science Logic</i>. Vol 23. Leibniz
    International Proceedings in Informatics. Schloss Dagstuhl - Leibniz-Zentrum für
    Informatik; 2013:181-196. doi:<a href="https://doi.org/10.4230/LIPIcs.CSL.2013.181">10.4230/LIPIcs.CSL.2013.181</a>'
  apa: 'Chatterjee, K., &#38; Fijalkow, N. (2013). Infinite-state games with finitary
    conditions. In <i>22nd EACSL Annual Conference on Computer Science Logic</i> (Vol.
    23, pp. 181–196). Torino, Italy: Schloss Dagstuhl - Leibniz-Zentrum für Informatik.
    <a href="https://doi.org/10.4230/LIPIcs.CSL.2013.181">https://doi.org/10.4230/LIPIcs.CSL.2013.181</a>'
  chicago: Chatterjee, Krishnendu, and Nathanaël Fijalkow. “Infinite-State Games with
    Finitary Conditions.” In <i>22nd EACSL Annual Conference on Computer Science Logic</i>,
    23:181–96. Leibniz International Proceedings in Informatics. Schloss Dagstuhl
    - Leibniz-Zentrum für Informatik, 2013. <a href="https://doi.org/10.4230/LIPIcs.CSL.2013.181">https://doi.org/10.4230/LIPIcs.CSL.2013.181</a>.
  ieee: K. Chatterjee and N. Fijalkow, “Infinite-state games with finitary conditions,”
    in <i>22nd EACSL Annual Conference on Computer Science Logic</i>, Torino, Italy,
    2013, vol. 23, pp. 181–196.
  ista: 'Chatterjee K, Fijalkow N. 2013. Infinite-state games with finitary conditions.
    22nd EACSL Annual Conference on Computer Science Logic. CSL: Computer Science
    LogicLeibniz International Proceedings in Informatics, LIPIcs, vol. 23, 181–196.'
  mla: Chatterjee, Krishnendu, and Nathanaël Fijalkow. “Infinite-State Games with
    Finitary Conditions.” <i>22nd EACSL Annual Conference on Computer Science Logic</i>,
    vol. 23, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2013, pp. 181–96,
    doi:<a href="https://doi.org/10.4230/LIPIcs.CSL.2013.181">10.4230/LIPIcs.CSL.2013.181</a>.
  short: K. Chatterjee, N. Fijalkow, in:, 22nd EACSL Annual Conference on Computer
    Science Logic, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2013, pp. 181–196.
conference:
  end_date: 2013-09-05
  location: Torino, Italy
  name: 'CSL: Computer Science Logic'
  start_date: 203-09-02
corr_author: '1'
date_created: 2018-12-11T11:51:39Z
date_published: 2013-09-01T00:00:00Z
date_updated: 2024-10-09T20:55:23Z
day: '01'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.4230/LIPIcs.CSL.2013.181
ec_funded: 1
file:
- access_level: open_access
  checksum: b7091a3866db573c0db5ec486952255e
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:13:38Z
  date_updated: 2020-07-14T12:44:47Z
  file_id: '5023'
  file_name: IST-2016-624-v1+1_ChKr_Infinite-state_games_2013_17.pdf
  file_size: 547296
  relation: main_file
file_date_updated: 2020-07-14T12:44:47Z
has_accepted_license: '1'
intvolume: '        23'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 181 - 196
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11407
  name: Game Theory
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2587B514-B435-11E9-9278-68D0E5697425
  name: Microsoft Research Faculty Fellowship
publication: 22nd EACSL Annual Conference on Computer Science Logic
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '5837'
pubrep_id: '624'
quality_controlled: '1'
scopus_import: 1
series_title: Leibniz International Proceedings in Informatics
status: public
title: Infinite-state games with finitary conditions
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 23
year: '2013'
...
---
OA_place: repository
OA_type: green
_id: '1376'
abstract:
- lang: eng
  text: 'We consider the distributed synthesis problem for temporal logic specifications.
    Traditionally, the problem has been studied for LTL, and the previous results
    show that the problem is decidable iff there is no information fork in the architecture.
    We consider the problem for fragments of LTL and our main results are as follows:
    (1) We show that the problem is undecidable for architectures with information
    forks even for the fragment of LTL with temporal operators restricted to next
    and eventually. (2) For specifications restricted to globally along with non-nested
    next operators, we establish decidability (in EXPSPACE) for star architectures
    where the processes receive disjoint inputs, whereas we establish undecidability
    for architectures containing an information fork-meet structure. (3) Finally,
    we consider LTL without the next operator, and establish decidability (NEXPTIME-complete)
    for all architectures for a fragment that consists of a set of safety assumptions,
    and a set of guarantees where each guarantee is a safety, reachability, or liveness
    condition.'
article_processing_charge: No
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Jan
  full_name: Otop, Jan
  id: 2FC5DA74-F248-11E8-B48F-1D18A9856A87
  last_name: Otop
- first_name: Andreas
  full_name: Pavlogiannis, Andreas
  id: 49704004-F248-11E8-B48F-1D18A9856A87
  last_name: Pavlogiannis
  orcid: 0000-0002-8943-0722
citation:
  ama: 'Chatterjee K, Henzinger TA, Otop J, Pavlogiannis A. Distributed synthesis
    for LTL fragments. In: <i>13th International Conference on Formal Methods in Computer-Aided
    Design</i>. IEEE; 2013:18-25. doi:<a href="https://doi.org/10.1109/FMCAD.2013.6679386">10.1109/FMCAD.2013.6679386</a>'
  apa: 'Chatterjee, K., Henzinger, T. A., Otop, J., &#38; Pavlogiannis, A. (2013).
    Distributed synthesis for LTL fragments. In <i>13th International Conference on
    Formal Methods in Computer-Aided Design</i> (pp. 18–25). Portland, OR, United
    States: IEEE. <a href="https://doi.org/10.1109/FMCAD.2013.6679386">https://doi.org/10.1109/FMCAD.2013.6679386</a>'
  chicago: Chatterjee, Krishnendu, Thomas A Henzinger, Jan Otop, and Andreas Pavlogiannis.
    “Distributed Synthesis for LTL Fragments.” In <i>13th International Conference
    on Formal Methods in Computer-Aided Design</i>, 18–25. IEEE, 2013. <a href="https://doi.org/10.1109/FMCAD.2013.6679386">https://doi.org/10.1109/FMCAD.2013.6679386</a>.
  ieee: K. Chatterjee, T. A. Henzinger, J. Otop, and A. Pavlogiannis, “Distributed
    synthesis for LTL fragments,” in <i>13th International Conference on Formal Methods
    in Computer-Aided Design</i>, Portland, OR, United States, 2013, pp. 18–25.
  ista: 'Chatterjee K, Henzinger TA, Otop J, Pavlogiannis A. 2013. Distributed synthesis
    for LTL fragments. 13th International Conference on Formal Methods in Computer-Aided
    Design. FMCAD: Formal Methods in Computer-Aided Design, 18–25.'
  mla: Chatterjee, Krishnendu, et al. “Distributed Synthesis for LTL Fragments.” <i>13th
    International Conference on Formal Methods in Computer-Aided Design</i>, IEEE,
    2013, pp. 18–25, doi:<a href="https://doi.org/10.1109/FMCAD.2013.6679386">10.1109/FMCAD.2013.6679386</a>.
  short: K. Chatterjee, T.A. Henzinger, J. Otop, A. Pavlogiannis, in:, 13th International
    Conference on Formal Methods in Computer-Aided Design, IEEE, 2013, pp. 18–25.
conference:
  end_date: 2013-10-23
  location: Portland, OR, United States
  name: 'FMCAD: Formal Methods in Computer-Aided Design'
  start_date: 2013-10-20
corr_author: '1'
date_created: 2018-12-11T11:51:40Z
date_published: 2013-12-11T00:00:00Z
date_updated: 2025-06-26T08:33:43Z
day: '11'
department:
- _id: KrCh
- _id: ToHe
doi: 10.1109/FMCAD.2013.6679386
ec_funded: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.15479/AT:IST-2013-130-v1-1
month: '12'
oa: 1
oa_version: Preprint
page: 18 - 25
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
- _id: 2587B514-B435-11E9-9278-68D0E5697425
  name: Microsoft Research Faculty Fellowship
publication: 13th International Conference on Formal Methods in Computer-Aided Design
publication_status: published
publisher: IEEE
publist_id: '5835'
quality_controlled: '1'
related_material:
  record:
  - id: '5406'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: Distributed synthesis for LTL fragments
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '1385'
abstract:
- lang: eng
  text: It is often difficult to correctly implement a Boolean controller for a complex
    system, especially when concurrency is involved. Yet, it may be easy to formally
    specify a controller. For instance, for a pipelined processor it suffices to state
    that the visible behavior of the pipelined system should be identical to a non-pipelined
    reference system (Burch-Dill paradigm). We present a novel procedure to efficiently
    synthesize multiple Boolean control signals from a specification given as a quantified
    first-order formula (with a specific quantifier structure). Our approach uses
    uninterpreted functions to abstract details of the design. We construct an unsatisfiable
    SMT formula from the given specification. Then, from just one proof of unsatisfiability,
    we use a variant of Craig interpolation to compute multiple coordinated interpolants
    that implement the Boolean control signals. Our method avoids iterative learning
    and back-substitution of the control functions. We applied our approach to synthesize
    a controller for a simple two-stage pipelined processor, and present first experimental
    results.
acknowledgement: "This research was supported by the European Commission through project\r\nDIAMOND
  \ (FP7-2009-IST-4-248613), and  QUAINT  (I774-N23),  "
arxiv: 1
author:
- first_name: Georg
  full_name: Hofferek, Georg
  last_name: Hofferek
- first_name: Ashutosh
  full_name: Gupta, Ashutosh
  id: 335E5684-F248-11E8-B48F-1D18A9856A87
  last_name: Gupta
- first_name: Bettina
  full_name: Könighofer, Bettina
  last_name: Könighofer
- first_name: Jie
  full_name: Jiang, Jie
  last_name: Jiang
- first_name: Roderick
  full_name: Bloem, Roderick
  last_name: Bloem
citation:
  ama: 'Hofferek G, Gupta A, Könighofer B, Jiang J, Bloem R. Synthesizing multiple
    boolean functions using interpolation on a single proof. In: <i>2013 Formal Methods
    in Computer-Aided Design</i>. IEEE; 2013:77-84. doi:<a href="https://doi.org/10.1109/FMCAD.2013.6679394">10.1109/FMCAD.2013.6679394</a>'
  apa: 'Hofferek, G., Gupta, A., Könighofer, B., Jiang, J., &#38; Bloem, R. (2013).
    Synthesizing multiple boolean functions using interpolation on a single proof.
    In <i>2013 Formal Methods in Computer-Aided Design</i> (pp. 77–84). Portland,
    OR, United States: IEEE. <a href="https://doi.org/10.1109/FMCAD.2013.6679394">https://doi.org/10.1109/FMCAD.2013.6679394</a>'
  chicago: Hofferek, Georg, Ashutosh Gupta, Bettina Könighofer, Jie Jiang, and Roderick
    Bloem. “Synthesizing Multiple Boolean Functions Using Interpolation on a Single
    Proof.” In <i>2013 Formal Methods in Computer-Aided Design</i>, 77–84. IEEE, 2013.
    <a href="https://doi.org/10.1109/FMCAD.2013.6679394">https://doi.org/10.1109/FMCAD.2013.6679394</a>.
  ieee: G. Hofferek, A. Gupta, B. Könighofer, J. Jiang, and R. Bloem, “Synthesizing
    multiple boolean functions using interpolation on a single proof,” in <i>2013
    Formal Methods in Computer-Aided Design</i>, Portland, OR, United States, 2013,
    pp. 77–84.
  ista: 'Hofferek G, Gupta A, Könighofer B, Jiang J, Bloem R. 2013. Synthesizing multiple
    boolean functions using interpolation on a single proof. 2013 Formal Methods in
    Computer-Aided Design. FMCAD: Formal Methods in Computer-Aided Design, 77–84.'
  mla: Hofferek, Georg, et al. “Synthesizing Multiple Boolean Functions Using Interpolation
    on a Single Proof.” <i>2013 Formal Methods in Computer-Aided Design</i>, IEEE,
    2013, pp. 77–84, doi:<a href="https://doi.org/10.1109/FMCAD.2013.6679394">10.1109/FMCAD.2013.6679394</a>.
  short: G. Hofferek, A. Gupta, B. Könighofer, J. Jiang, R. Bloem, in:, 2013 Formal
    Methods in Computer-Aided Design, IEEE, 2013, pp. 77–84.
conference:
  end_date: 2013-10-23
  location: Portland, OR, United States
  name: 'FMCAD: Formal Methods in Computer-Aided Design'
  start_date: 2013-10-20
date_created: 2018-12-11T11:51:43Z
date_published: 2013-12-11T00:00:00Z
date_updated: 2024-10-21T06:02:56Z
day: '11'
department:
- _id: ToHe
doi: 10.1109/FMCAD.2013.6679394
ec_funded: 1
external_id:
  arxiv:
  - '1308.4767'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1308.4767
month: '12'
oa: 1
oa_version: Preprint
page: 77 - 84
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
publication: 2013 Formal Methods in Computer-Aided Design
publication_status: published
publisher: IEEE
publist_id: '5825'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Synthesizing multiple boolean functions using interpolation on a single proof
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '1387'
abstract:
- lang: eng
  text: Choices made by nondeterministic word automata depend on both the past (the
    prefix of the word read so far) and the future (the suffix yet to be read). In
    several applications, most notably synthesis, the future is diverse or unknown,
    leading to algorithms that are based on deterministic automata. Hoping to retain
    some of the advantages of nondeterministic automata, researchers have studied
    restricted classes of nondeterministic automata. Three such classes are nondeterministic
    automata that are good for trees (GFT; i.e., ones that can be expanded to tree
    automata accepting the derived tree languages, thus whose choices should satisfy
    diverse futures), good for games (GFG; i.e., ones whose choices depend only on
    the past), and determinizable by pruning (DBP; i.e., ones that embody equivalent
    deterministic automata). The theoretical properties and relative merits of the
    different classes are still open, having vagueness on whether they really differ
    from deterministic automata. In particular, while DBP ⊆ GFG ⊆ GFT, it is not known
    whether every GFT automaton is GFG and whether every GFG automaton is DBP. Also
    open is the possible succinctness of GFG and GFT automata compared to deterministic
    automata. We study these problems for ω-regular automata with all common acceptance
    conditions. We show that GFT=GFG⊃DBP, and describe a determinization construction
    for GFG automata.
acknowledgement: and ERC Grant QUALITY.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Udi
  full_name: Boker, Udi
  id: 31E297B6-F248-11E8-B48F-1D18A9856A87
  last_name: Boker
- first_name: Denis
  full_name: Kuperberg, Denis
  last_name: Kuperberg
- first_name: Orna
  full_name: Kupferman, Orna
  last_name: Kupferman
- first_name: Michał
  full_name: Skrzypczak, Michał
  last_name: Skrzypczak
citation:
  ama: Boker U, Kuperberg D, Kupferman O, Skrzypczak M. Nondeterminism in the presence
    of a diverse or unknown future. 2013;7966(PART 2):89-100. doi:<a href="https://doi.org/10.1007/978-3-642-39212-2_11">10.1007/978-3-642-39212-2_11</a>
  apa: 'Boker, U., Kuperberg, D., Kupferman, O., &#38; Skrzypczak, M. (2013). Nondeterminism
    in the presence of a diverse or unknown future. Presented at the ICALP: Automata,
    Languages and Programming, Riga, Latvia: Springer. <a href="https://doi.org/10.1007/978-3-642-39212-2_11">https://doi.org/10.1007/978-3-642-39212-2_11</a>'
  chicago: Boker, Udi, Denis Kuperberg, Orna Kupferman, and Michał Skrzypczak. “Nondeterminism
    in the Presence of a Diverse or Unknown Future.” Lecture Notes in Computer Science.
    Springer, 2013. <a href="https://doi.org/10.1007/978-3-642-39212-2_11">https://doi.org/10.1007/978-3-642-39212-2_11</a>.
  ieee: U. Boker, D. Kuperberg, O. Kupferman, and M. Skrzypczak, “Nondeterminism in
    the presence of a diverse or unknown future,” vol. 7966, no. PART 2. Springer,
    pp. 89–100, 2013.
  ista: Boker U, Kuperberg D, Kupferman O, Skrzypczak M. 2013. Nondeterminism in the
    presence of a diverse or unknown future. 7966(PART 2), 89–100.
  mla: Boker, Udi, et al. <i>Nondeterminism in the Presence of a Diverse or Unknown
    Future</i>. Vol. 7966, no. PART 2, Springer, 2013, pp. 89–100, doi:<a href="https://doi.org/10.1007/978-3-642-39212-2_11">10.1007/978-3-642-39212-2_11</a>.
  short: U. Boker, D. Kuperberg, O. Kupferman, M. Skrzypczak, 7966 (2013) 89–100.
conference:
  end_date: 2013-07-12
  location: Riga, Latvia
  name: 'ICALP: Automata, Languages and Programming'
  start_date: 2013-07-08
date_created: 2018-12-11T11:51:44Z
date_published: 2013-07-01T00:00:00Z
date_updated: 2020-08-11T10:09:09Z
day: '01'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1007/978-3-642-39212-2_11
ec_funded: 1
file:
- access_level: open_access
  checksum: 98bc02e3793072e279ec8d364b381ff3
  content_type: application/pdf
  creator: dernst
  date_created: 2020-05-15T11:05:50Z
  date_updated: 2020-07-14T12:44:48Z
  file_id: '7857'
  file_name: 2013_ICALP_Boker.pdf
  file_size: 276982
  relation: main_file
file_date_updated: 2020-07-14T12:44:48Z
has_accepted_license: '1'
intvolume: '      7966'
issue: PART 2
language:
- iso: eng
month: '07'
oa: 1
oa_version: Submitted Version
page: 89 - 100
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
publication_status: published
publisher: Springer
publist_id: '5823'
quality_controlled: '1'
scopus_import: 1
series_title: Lecture Notes in Computer Science
status: public
title: Nondeterminism in the presence of a diverse or unknown future
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7966
year: '2013'
...
---
_id: '1405'
abstract:
- lang: eng
  text: "Motivated by the analysis of highly dynamic message-passing systems, i.e.
    unbounded thread creation, mobility, etc. we present a framework for the analysis
    of depth-bounded systems. Depth-bounded systems are one of the most expressive
    known fragment of the π-calculus for which interesting verification problems are
    still decidable. Even though they are infinite state systems depth-bounded systems
    are well-structured, thus can be analyzed algorithmically. We give an interpretation
    of depth-bounded systems as graph-rewriting systems. This gives more flexibility
    and ease of use to apply depth-bounded systems to other type of systems like shared
    memory concurrency.\r\n\r\nFirst, we develop an adequate domain of limits for
    depth-bounded systems, a prerequisite for the effective representation of downward-closed
    sets. Downward-closed sets are needed by forward saturation-based algorithms to
    represent potentially infinite sets of states. Then, we present an abstract interpretation
    framework to compute the covering set of well-structured transition systems. Because,
    in general, the covering set is not computable, our abstraction over-approximates
    the actual covering set. Our abstraction captures the essence of acceleration
    based-algorithms while giving up enough precision to ensure convergence. We have
    implemented the analysis in the PICASSO tool and show that it is accurate in practice.
    Finally, we build some further analyses like termination using the covering set
    as starting point."
acknowledgement: "This work was supported in part by the Austrian Science Fund NFN
  RiSE (Rigorous Systems Engineering) and by the ERC Advanced Grant QUAREM (Quantitative
  Reactve Modeling).\r\nChapter 2, 3, and 4 are joint work with Thomas A. Henzinger
  and Thomas Wies. Chapter 2 was published in FoSSaCS 2010 as “Forward Analysis of
  Depth-Bounded Processes” [112]. Chapter 3 was published in VMCAI 2012 as “Ideal
  Abstractions for Well-Structured Transition Systems” [114]. Chap- ter 5.1 is joint
  work with Kshitij Bansal, Eric Koskinen, and Thomas Wies. It was published in TACAS
  2013 as “Structural Counter Abstraction” [13]. The author’s contribution in this
  part is mostly related to the implementation. The theory required to understand
  the method and its implementation is quickly recalled to make the thesis self-contained,
  but should not be considered as a contribution. For the details of the methods,
  we refer the reader to the orig- inal publication [13] and the corresponding technical
  report [14]. Chapter 5.2 is ongoing work with Shahram Esmaeilsabzali, Rupak Majumdar,
  and Thomas Wies. I also would like to thank the people who supported over the past
  4 years. My advisor Thomas A. Henzinger who gave me a lot of freedom to work on
  projects I was interested in. My collaborators, especially Thomas Wies with whom
  I worked since the beginning. The members of my thesis committee, Viktor Kun- cak
  and Rupak Majumdar, who also agreed to advise me. Simon Aeschbacher, Pavol Cerny,
  Cezara Dragoi, Arjun Radhakrishna, my family, friends and col- leagues who created
  an enjoyable environment. "
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Damien
  full_name: Zufferey, Damien
  id: 4397AC76-F248-11E8-B48F-1D18A9856A87
  last_name: Zufferey
  orcid: 0000-0002-3197-8736
citation:
  ama: Zufferey D. Analysis of dynamic message passing programs. 2013. doi:<a href="https://doi.org/10.15479/at:ista:1405">10.15479/at:ista:1405</a>
  apa: Zufferey, D. (2013). <i>Analysis of dynamic message passing programs</i>. Institute
    of Science and Technology Austria. <a href="https://doi.org/10.15479/at:ista:1405">https://doi.org/10.15479/at:ista:1405</a>
  chicago: Zufferey, Damien. “Analysis of Dynamic Message Passing Programs.” Institute
    of Science and Technology Austria, 2013. <a href="https://doi.org/10.15479/at:ista:1405">https://doi.org/10.15479/at:ista:1405</a>.
  ieee: D. Zufferey, “Analysis of dynamic message passing programs,” Institute of
    Science and Technology Austria, 2013.
  ista: Zufferey D. 2013. Analysis of dynamic message passing programs. Institute
    of Science and Technology Austria.
  mla: Zufferey, Damien. <i>Analysis of Dynamic Message Passing Programs</i>. Institute
    of Science and Technology Austria, 2013, doi:<a href="https://doi.org/10.15479/at:ista:1405">10.15479/at:ista:1405</a>.
  short: D. Zufferey, Analysis of Dynamic Message Passing Programs, Institute of Science
    and Technology Austria, 2013.
corr_author: '1'
date_created: 2018-12-11T11:51:50Z
date_published: 2013-09-05T00:00:00Z
date_updated: 2025-04-15T08:11:54Z
day: '05'
ddc:
- '000'
degree_awarded: PhD
department:
- _id: ToHe
- _id: GradSch
doi: 10.15479/at:ista:1405
ec_funded: 1
file:
- access_level: open_access
  checksum: ed2d7b52933d134e8dc69d569baa284e
  content_type: application/pdf
  creator: dernst
  date_created: 2021-02-22T11:28:36Z
  date_updated: 2021-02-22T11:28:36Z
  file_id: '9176'
  file_name: 2013_Zufferey_thesis_final.pdf
  file_size: 1514906
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  success: 1
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file_date_updated: 2021-11-17T13:47:58Z
has_accepted_license: '1'
language:
- iso: eng
main_file_link:
- url: http://dzufferey.github.io/files/2013_thesis.pdf
month: '09'
oa: 1
oa_version: Published Version
page: '134'
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
publist_id: '5802'
related_material:
  record:
  - id: '4361'
    relation: part_of_dissertation
    status: public
  - id: '3251'
    relation: part_of_dissertation
    status: public
  - id: '2847'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
title: Analysis of dynamic message passing programs
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2013'
...
---
_id: '1406'
abstract:
- lang: eng
  text: Epithelial spreading is a critical part of various developmental and wound
    repair processes. Here we use zebrafish epiboly as a model system to study the
    cellular and molecular mechanisms underlying the spreading of epithelial sheets.
    During zebrafish epiboly the enveloping cell layer (EVL), a simple squamous epithelium,
    spreads over the embryo to eventually cover the entire yolk cell by the end of
    gastrulation. The EVL leading edge is anchored through tight junctions to the
    yolk syncytial layer (YSL), where directly adjacent to the EVL margin a contractile
    actomyosin ring is formed that is thought to drive EVL epiboly. The prevalent
    view in the field was that the contractile ring exerts a pulling force on the
    EVL margin, which pulls the EVL towards the vegetal pole. However, how this force
    is generated and how it affects EVL morphology still remains elusive. Moreover,
    the cellular mechanisms mediating the increase in EVL surface area, while maintaining
    tissue integrity and function are still unclear. Here we show that the YSL actomyosin
    ring pulls on the EVL margin by two distinct force-generating mechanisms. One
    mechanism is based on contraction of the ring around its circumference, as previously
    proposed. The second mechanism is based on actomyosin retrogade flows, generating
    force through resistance against the substrate. The latter can function at any
    epiboly stage even in situations where the contraction-based mechanism is unproductive.
    Additionally, we demonstrate that during epiboly the EVL is subjected to anisotropic
    tension, which guides the orientation of EVL cell division along the main axis
    (animal-vegetal) of tension. The influence of tension in cell division orientation
    involves cell elongation and requires myosin-2 activity for proper spindle alignment.
    Strikingly, we reveal that tension-oriented cell divisions release anisotropic
    tension within the EVL and that in the absence of such divisions, EVL cells undergo
    ectopic fusions. We conclude that forces applied to the EVL by the action of the
    YSL actomyosin ring generate a tension anisotropy in the EVL that orients cell
    divisions, which in turn limit tissue tension increase thereby facilitating tissue
    spreading.
acknowledged_ssus:
- _id: Bio
- _id: PreCl
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Pedro
  full_name: Campinho, Pedro
  id: 3AFBBC42-F248-11E8-B48F-1D18A9856A87
  last_name: Campinho
  orcid: 0000-0002-8526-5416
citation:
  ama: 'Campinho P. Mechanics of zebrafish epiboly: Tension-oriented cell divisions
    limit anisotropic tissue tension in epithelial spreading. 2013.'
  apa: 'Campinho, P. (2013). <i>Mechanics of zebrafish epiboly: Tension-oriented cell
    divisions limit anisotropic tissue tension in epithelial spreading</i>. Institute
    of Science and Technology Austria.'
  chicago: 'Campinho, Pedro. “Mechanics of Zebrafish Epiboly: Tension-Oriented Cell
    Divisions Limit Anisotropic Tissue Tension in Epithelial Spreading.” Institute
    of Science and Technology Austria, 2013.'
  ieee: 'P. Campinho, “Mechanics of zebrafish epiboly: Tension-oriented cell divisions
    limit anisotropic tissue tension in epithelial spreading,” Institute of Science
    and Technology Austria, 2013.'
  ista: 'Campinho P. 2013. Mechanics of zebrafish epiboly: Tension-oriented cell divisions
    limit anisotropic tissue tension in epithelial spreading. Institute of Science
    and Technology Austria.'
  mla: 'Campinho, Pedro. <i>Mechanics of Zebrafish Epiboly: Tension-Oriented Cell
    Divisions Limit Anisotropic Tissue Tension in Epithelial Spreading</i>. Institute
    of Science and Technology Austria, 2013.'
  short: 'P. Campinho, Mechanics of Zebrafish Epiboly: Tension-Oriented Cell Divisions
    Limit Anisotropic Tissue Tension in Epithelial Spreading, Institute of Science
    and Technology Austria, 2013.'
corr_author: '1'
date_created: 2018-12-11T11:51:50Z
date_published: 2013-10-01T00:00:00Z
date_updated: 2024-12-09T14:12:48Z
day: '01'
degree_awarded: PhD
department:
- _id: CaHe
language:
- iso: eng
month: '10'
oa_version: None
page: '123'
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
publist_id: '5801'
status: public
supervisor:
- first_name: Carl-Philipp J
  full_name: Heisenberg, Carl-Philipp J
  id: 39427864-F248-11E8-B48F-1D18A9856A87
  last_name: Heisenberg
  orcid: 0000-0002-0912-4566
title: 'Mechanics of zebrafish epiboly: Tension-oriented cell divisions limit anisotropic
  tissue tension in epithelial spreading'
type: dissertation
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '1442'
abstract:
- lang: eng
  text: We give a cohomological interpretation of both the Kac polynomial and the
    refined Donaldson-Thomas-invariants of quivers. This interpretation yields a proof
    of a conjecture of Kac from 1982 and gives a new perspective on recent work of
    Kontsevich-Soibelman. Thisis achieved by computing, via an arithmetic Fourier
    transform, the dimensions of the isotypical components of the cohomology of associated
    Nakajima quiver varieties under the action of a Weyl group. The generating function
    of the corresponding Poincare polynomials is an extension of Hua's formula for
    Kac polynomials of quivers involving Hall-Littlewood symmetric functions. The
    resulting formulae contain a wide range of information on the geometry of the
    quiver varieties.
acknowledgement: |-
  The first author thanks the Royal Society for funding his research 2005-2012 in the form of a Royal Society University Research Fellowship as well as the Mathematical Institute and Wadham College in Oxford for a very productive environment. The second author is supported by Agence Nationale de la Recherche grant
  ANR-09-JCJC-0102-01. The third author is supported by the NSF grant DMS-1101484 and a Research Scholarship from the Clay Mathematical Institute.
author:
- first_name: Tamas
  full_name: Tamas Hausel
  id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
  last_name: Hausel
- first_name: Emmanuel
  full_name: Letellier, Emmanuel
  last_name: Letellier
- first_name: Fernando
  full_name: Rodríguez Villegas, Fernando
  last_name: Rodríguez Villegas
citation:
  ama: Hausel T, Letellier E, Rodríguez Villegas F. Positivity for Kac polynomials
    and DT-invariants of quivers. <i>Annals of Mathematics</i>. 2013;177(3):1147-1168.
    doi:<a href="https://doi.org/10.4007/annals.2013.177.3.8">10.4007/annals.2013.177.3.8</a>
  apa: Hausel, T., Letellier, E., &#38; Rodríguez Villegas, F. (2013). Positivity
    for Kac polynomials and DT-invariants of quivers. <i>Annals of Mathematics</i>.
    Princeton University Press. <a href="https://doi.org/10.4007/annals.2013.177.3.8">https://doi.org/10.4007/annals.2013.177.3.8</a>
  chicago: Hausel, Tamás, Emmanuel Letellier, and Fernando Rodríguez Villegas. “Positivity
    for Kac Polynomials and DT-Invariants of Quivers.” <i>Annals of Mathematics</i>.
    Princeton University Press, 2013. <a href="https://doi.org/10.4007/annals.2013.177.3.8">https://doi.org/10.4007/annals.2013.177.3.8</a>.
  ieee: T. Hausel, E. Letellier, and F. Rodríguez Villegas, “Positivity for Kac polynomials
    and DT-invariants of quivers,” <i>Annals of Mathematics</i>, vol. 177, no. 3.
    Princeton University Press, pp. 1147–1168, 2013.
  ista: Hausel T, Letellier E, Rodríguez Villegas F. 2013. Positivity for Kac polynomials
    and DT-invariants of quivers. Annals of Mathematics. 177(3), 1147–1168.
  mla: Hausel, Tamás, et al. “Positivity for Kac Polynomials and DT-Invariants of
    Quivers.” <i>Annals of Mathematics</i>, vol. 177, no. 3, Princeton University
    Press, 2013, pp. 1147–68, doi:<a href="https://doi.org/10.4007/annals.2013.177.3.8">10.4007/annals.2013.177.3.8</a>.
  short: T. Hausel, E. Letellier, F. Rodríguez Villegas, Annals of Mathematics 177
    (2013) 1147–1168.
date_created: 2018-12-11T11:52:02Z
date_published: 2013-01-01T00:00:00Z
date_updated: 2021-01-12T06:50:47Z
day: '01'
doi: 10.4007/annals.2013.177.3.8
extern: 1
intvolume: '       177'
issue: '3'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1204.2375
month: '01'
oa: 1
page: 1147 - 1168
publication: Annals of Mathematics
publication_status: published
publisher: Princeton University Press
publist_id: '5754'
quality_controlled: 0
status: public
title: Positivity for Kac polynomials and DT-invariants of quivers
type: journal_article
volume: 177
year: '2013'
...
---
_id: '1443'
abstract:
- lang: eng
  text: 'Here we survey several results and conjectures on the cohomology of the total
    space of the Hitchin system: the moduli space of semi-stable rank n and degree
    d Higgs bundles on a complex algebraic curve C. The picture emerging is a dynamic
    mixture of ideas originating in theoretical physics such as gauge theory and mirror
    symmetry, Weil conjectures in arithmetic algebraic geometry, representation theory
    of finite groups of Lie type and Langlands duality in number theory.'
alternative_title:
- Advanced Lectures in Mathematics
author:
- first_name: Tamas
  full_name: Tamas Hausel
  id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
  last_name: Hausel
citation:
  ama: 'Hausel T. Global topology of the Hitchin system. In: <i>Handbook of Moduli:
    Volume II</i>. Vol 25. International Press; 2013:29-70.'
  apa: 'Hausel, T. (2013). Global topology of the Hitchin system. In <i>Handbook of
    Moduli: Volume II</i> (Vol. 25, pp. 29–70). International Press.'
  chicago: 'Hausel, Tamás. “Global Topology of the Hitchin System.” In <i>Handbook
    of Moduli: Volume II</i>, 25:29–70. International Press, 2013.'
  ieee: 'T. Hausel, “Global topology of the Hitchin system,” in <i>Handbook of Moduli:
    Volume II</i>, vol. 25, International Press, 2013, pp. 29–70.'
  ista: 'Hausel T. 2013.Global topology of the Hitchin system. In: Handbook of Moduli:
    Volume II. Advanced Lectures in Mathematics, vol. 25, 29–70.'
  mla: 'Hausel, Tamás. “Global Topology of the Hitchin System.” <i>Handbook of Moduli:
    Volume II</i>, vol. 25, International Press, 2013, pp. 29–70.'
  short: 'T. Hausel, in:, Handbook of Moduli: Volume II, International Press, 2013,
    pp. 29–70.'
date_created: 2018-12-11T11:52:03Z
date_published: 2013-03-15T00:00:00Z
date_updated: 2021-01-12T06:50:47Z
day: '15'
extern: 1
intvolume: '        25'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1102.1717
month: '03'
oa: 1
page: 29 - 70
publication: 'Handbook of Moduli: Volume II'
publication_status: published
publisher: International Press
publist_id: '5753'
quality_controlled: 0
status: public
title: Global topology of the Hitchin system
type: book_chapter
volume: 25
year: '2013'
...
---
_id: '1469'
abstract:
- lang: eng
  text: We study connections between the topology of generic character varieties of
    fundamental groups of punctured Riemann surfaces, Macdonald polynomials, quiver
    representations, Hilbert schemes on Cx × Cx, modular forms and multiplicities
    in tensor products of irreducible characters of finite general linear groups.
acknowledgement: During the preparation of this paper TH was supported by a Royal
  Society University Research Fellowship at the University of Oxford. EL was supported
  by ANR-09-JCJC-0102-01. FRV was supported by NSF grant DMS-0200605, an FRA from
  the University of Texas at Austin, EPSRC grant EP/G027110/1, Visiting Fellowships
  at All Souls and Wadham Colleges in Oxford and a Research Scholarship from the Clay
  Mathematical Institute.
author:
- first_name: Tamas
  full_name: Tamas Hausel
  id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
  last_name: Hausel
- first_name: Emmanuel
  full_name: Letellier, Emmanuel
  last_name: Letellier
- first_name: Fernando
  full_name: Rodríguez Villegas, Fernando
  last_name: Rodríguez Villegas
citation:
  ama: Hausel T, Letellier E, Rodríguez Villegas F. Arithmetic harmonic analysis on
    character and quiver varieties II. <i>Advances in Mathematics</i>. 2013;234:85-128.
    doi:<a href="https://doi.org/10.1016/j.aim.2012.10.009">10.1016/j.aim.2012.10.009</a>
  apa: Hausel, T., Letellier, E., &#38; Rodríguez Villegas, F. (2013). Arithmetic
    harmonic analysis on character and quiver varieties II. <i>Advances in Mathematics</i>.
    Academic Press. <a href="https://doi.org/10.1016/j.aim.2012.10.009">https://doi.org/10.1016/j.aim.2012.10.009</a>
  chicago: Hausel, Tamás, Emmanuel Letellier, and Fernando Rodríguez Villegas. “Arithmetic
    Harmonic Analysis on Character and Quiver Varieties II.” <i>Advances in Mathematics</i>.
    Academic Press, 2013. <a href="https://doi.org/10.1016/j.aim.2012.10.009">https://doi.org/10.1016/j.aim.2012.10.009</a>.
  ieee: T. Hausel, E. Letellier, and F. Rodríguez Villegas, “Arithmetic harmonic analysis
    on character and quiver varieties II,” <i>Advances in Mathematics</i>, vol. 234.
    Academic Press, pp. 85–128, 2013.
  ista: Hausel T, Letellier E, Rodríguez Villegas F. 2013. Arithmetic harmonic analysis
    on character and quiver varieties II. Advances in Mathematics. 234, 85–128.
  mla: Hausel, Tamás, et al. “Arithmetic Harmonic Analysis on Character and Quiver
    Varieties II.” <i>Advances in Mathematics</i>, vol. 234, Academic Press, 2013,
    pp. 85–128, doi:<a href="https://doi.org/10.1016/j.aim.2012.10.009">10.1016/j.aim.2012.10.009</a>.
  short: T. Hausel, E. Letellier, F. Rodríguez Villegas, Advances in Mathematics 234
    (2013) 85–128.
date_created: 2018-12-11T11:52:12Z
date_published: 2013-02-15T00:00:00Z
date_updated: 2021-01-12T06:50:57Z
day: '15'
doi: 10.1016/j.aim.2012.10.009
extern: 1
intvolume: '       234'
month: '02'
page: 85 - 128
publication: Advances in Mathematics
publication_status: published
publisher: Academic Press
publist_id: '5724'
quality_controlled: 0
status: public
title: Arithmetic harmonic analysis on character and quiver varieties II
type: journal_article
volume: 234
year: '2013'
...
---
_id: '1470'
abstract:
- lang: eng
  text: We show that a natural isomorphism between the rational cohomology groups
    of the two zero-dimensional Hilbert schemes of n-points of two surfaces, the affine
    plane minus the axes and the cotangent bundle of an elliptic curve, exchanges
    the weight filtration on the first set of cohomology groups with the perverse
    Leray filtration associated with a natural fibration on the second set of cohomology
    groups. We discuss some associated hard Lefschetz phenomena.
acknowledgement: Mark Andrea A. de Cataldo was partially supported by N.S.A. and N.S.F.
  Tamás Hausel was supported by a Royal Society University Research Fellowship. Luca
  Migliorini was partially supported by PRIN 2007 project "Spazi di moduli e teoria
  di Lie"
author:
- first_name: Mark
  full_name: De Cataldo, Mark A
  last_name: De Cataldo
- first_name: Tamas
  full_name: Tamas Hausel
  id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
  last_name: Hausel
- first_name: Luca
  full_name: Migliorini, Luca
  last_name: Migliorini
citation:
  ama: De Cataldo M, Hausel T, Migliorini L. Exchange between perverse and weight
    filtration for the Hilbert schemes of points of two surfaces. <i>Journal of Singularities</i>.
    2013;7:23-38. doi:<a href="https://doi.org/10.5427/jsing.2013.7c">10.5427/jsing.2013.7c</a>
  apa: De Cataldo, M., Hausel, T., &#38; Migliorini, L. (2013). Exchange between perverse
    and weight filtration for the Hilbert schemes of points of two surfaces. <i>Journal
    of Singularities</i>. Worldwide Center of Mathematics. <a href="https://doi.org/10.5427/jsing.2013.7c">https://doi.org/10.5427/jsing.2013.7c</a>
  chicago: De Cataldo, Mark, Tamás Hausel, and Luca Migliorini. “Exchange between
    Perverse and Weight Filtration for the Hilbert Schemes of Points of Two Surfaces.”
    <i>Journal of Singularities</i>. Worldwide Center of Mathematics, 2013. <a href="https://doi.org/10.5427/jsing.2013.7c">https://doi.org/10.5427/jsing.2013.7c</a>.
  ieee: M. De Cataldo, T. Hausel, and L. Migliorini, “Exchange between perverse and
    weight filtration for the Hilbert schemes of points of two surfaces,” <i>Journal
    of Singularities</i>, vol. 7. Worldwide Center of Mathematics, pp. 23–38, 2013.
  ista: De Cataldo M, Hausel T, Migliorini L. 2013. Exchange between perverse and
    weight filtration for the Hilbert schemes of points of two surfaces. Journal of
    Singularities. 7, 23–38.
  mla: De Cataldo, Mark, et al. “Exchange between Perverse and Weight Filtration for
    the Hilbert Schemes of Points of Two Surfaces.” <i>Journal of Singularities</i>,
    vol. 7, Worldwide Center of Mathematics, 2013, pp. 23–38, doi:<a href="https://doi.org/10.5427/jsing.2013.7c">10.5427/jsing.2013.7c</a>.
  short: M. De Cataldo, T. Hausel, L. Migliorini, Journal of Singularities 7 (2013)
    23–38.
date_created: 2018-12-11T11:52:12Z
date_published: 2013-01-01T00:00:00Z
date_updated: 2021-01-12T06:50:58Z
day: '01'
doi: 10.5427/jsing.2013.7c
extern: 1
intvolume: '         7'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1012.2583
month: '01'
oa: 1
page: 23 - 38
publication: Journal of Singularities
publication_status: published
publisher: Worldwide Center of Mathematics
publist_id: '5725'
quality_controlled: 0
status: public
title: Exchange between perverse and weight filtration for the Hilbert schemes of
  points of two surfaces
type: journal_article
volume: 7
year: '2013'
...
