---
OA_place: publisher
OA_type: free access
_id: '22532'
abstract:
- lang: eng
text: 'The coarse‐grained spatial representation of many terrestrial ecosystem models
hampers the importance of local‐scale heterogeneities. To address this issue,
we combine a range of observations (forest inventories, eddy flux tower data,
and remote sensing products) and modeling approaches with contrasting degrees
of abstraction. The following models are selected: (i) Lund‐Potsdam‐Jena (LPJ),
a well‐established, area‐based, dynamic global vegetation model (DGVM); (ii) LPJ‐General
Ecosystem Simulator, a hybrid, individual‐based approach that additionally considers
plant population dynamics in greater detail; and (iii) distributed in space‐LPJ,
a spatially explicit version of LPJ, operating at a fine spatial resolution (100 m × 100 m),
which uses an enhanced hydrological representation accounting for lateral connectivity
of surface and subsurface water fluxes. By comparing model simulations with a
multivariate data set available at the catchment scale, we argue that (i) local
environmental and topographic attributes that are often ignored or crudely represented
in DGVM applications exert a strong control on terrestrial ecosystem response;
(ii) the assumption of steady state vegetation and soil carbon pools at the beginning
of simulation studies (e.g., under “current conditions”), as embedded in many
DGVM applications, is in contradiction with the current state of many forests
that are often out of equilibrium; and (iii) model evaluation against vegetation
carbon fluxes does not imply an accurate simulation of vegetation carbon stocks.
Having gained insights about the magnitude of aggregation‐induced biases due to
smoothing of spatial variability at the catchment scale, we discuss the implications
of our findings with respect to the global‐scale modeling studies of carbon cycle
and we illustrate alternative ways forward.'
article_processing_charge: No
article_type: original
author:
- first_name: Christoforos
full_name: Pappas, Christoforos
last_name: Pappas
- first_name: Simone
full_name: Fatichi, Simone
id: cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6
last_name: Fatichi
- first_name: Stefan
full_name: Rimkus, Stefan
last_name: Rimkus
- first_name: Paolo
full_name: Burlando, Paolo
last_name: Burlando
- first_name: Markus O.
full_name: Huber, Markus O.
last_name: Huber
citation:
ama: 'Pappas C, Fatichi S, Rimkus S, Burlando P, Huber MO. The role of local‐scale
heterogeneities in terrestrial ecosystem modeling. Journal of Geophysical Research:
Biogeosciences. 2015;120(2):341-360. doi:10.1002/2014jg002735'
apa: 'Pappas, C., Fatichi, S., Rimkus, S., Burlando, P., & Huber, M. O. (2015).
The role of local‐scale heterogeneities in terrestrial ecosystem modeling. Journal
of Geophysical Research: Biogeosciences. American Geophysical Union. https://doi.org/10.1002/2014jg002735'
chicago: 'Pappas, Christoforos, Simone Fatichi, Stefan Rimkus, Paolo Burlando, and
Markus O. Huber. “The Role of Local‐scale Heterogeneities in Terrestrial Ecosystem
Modeling.” Journal of Geophysical Research: Biogeosciences. American Geophysical
Union, 2015. https://doi.org/10.1002/2014jg002735.'
ieee: 'C. Pappas, S. Fatichi, S. Rimkus, P. Burlando, and M. O. Huber, “The role
of local‐scale heterogeneities in terrestrial ecosystem modeling,” Journal
of Geophysical Research: Biogeosciences, vol. 120, no. 2. American Geophysical
Union, pp. 341–360, 2015.'
ista: 'Pappas C, Fatichi S, Rimkus S, Burlando P, Huber MO. 2015. The role of local‐scale
heterogeneities in terrestrial ecosystem modeling. Journal of Geophysical Research:
Biogeosciences. 120(2), 341–360.'
mla: 'Pappas, Christoforos, et al. “The Role of Local‐scale Heterogeneities in Terrestrial
Ecosystem Modeling.” Journal of Geophysical Research: Biogeosciences, vol.
120, no. 2, American Geophysical Union, 2015, pp. 341–60, doi:10.1002/2014jg002735.'
short: 'C. Pappas, S. Fatichi, S. Rimkus, P. Burlando, M.O. Huber, Journal of Geophysical
Research: Biogeosciences 120 (2015) 341–360.'
das_tickbox: '1'
date_created: 2026-07-27T12:30:24Z
date_published: 2015-02-01T00:00:00Z
date_updated: 2026-08-06T08:41:45Z
day: '01'
doi: 10.1002/2014jg002735
extern: '1'
fulldoi: https://doi.org/10.1002/2014jg002735
intvolume: ' 120'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1002/2014JG002735
month: '02'
oa: 1
oa_version: Published Version
page: 341-360
publication: 'Journal of Geophysical Research: Biogeosciences'
publication_identifier:
eissn:
- 2169-8961
issn:
- 2169-8953
publication_status: published
publisher: American Geophysical Union
quality_controlled: '1'
scopus_import: '1'
status: public
title: The role of local‐scale heterogeneities in terrestrial ecosystem modeling
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 120
year: '2015'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '22559'
abstract:
- lang: eng
text: Extreme precipitation is thought to increase with warming at rates similar
to or greater than the water vapour holding capacity of the air at ~ 7% °C−1,
the so-called Clausius–Clapeyron (CC) rate. We present an empirical study of the
variability in the rates of increase in precipitation intensity with air temperature
using 30 years of 10 min and 1 h data from 59 stations in Switzerland. The analysis
is conducted on storm events rather than fixed interval data, and divided into
storm type subsets based on the presence of lightning which is expected to indicate
convection. The average rates of increase in extremes (95th percentile) of mean
event intensity computed from 10 min data are 6.5% °C−1 (no-lightning events),
8.9% °C−1 (lightning events) and 10.7% °C−1 (all events combined). For peak 10
min intensities during an event the rates are 6.9% °C−1 (no-lightning events),
9.3% °C−1 (lightning events) and 13.0% °C−1 (all events combined). Mixing of the
two storm types exaggerates the relations to air temperature. Doubled CC rates
reported by other studies are an exception in our data set, even in convective
rain. The large spatial variability in scaling rates across Switzerland suggests
that both local (orographic) and regional effects limit moisture supply and availability
in Alpine environments, especially in mountain valleys. The estimated number of
convective events has increased across Switzerland in the last 30 years, with
30% of the stations showing statistically significant changes. The changes in
intense convective storms with higher temperatures may be relevant for hydrological
risk connected with those events in the future.
article_processing_charge: No
article_type: original
author:
- first_name: P.
full_name: Molnar, P.
last_name: Molnar
- first_name: Simone
full_name: Fatichi, Simone
id: cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6
last_name: Fatichi
- first_name: L.
full_name: Gaál, L.
last_name: Gaál
- first_name: J.
full_name: Szolgay, J.
last_name: Szolgay
- first_name: P.
full_name: Burlando, P.
last_name: Burlando
citation:
ama: Molnar P, Fatichi S, Gaál L, Szolgay J, Burlando P. Storm type effects on super
Clausius–Clapeyron scaling of intense rainstorm properties with air temperature.
Hydrology and Earth System Sciences. 2015;19(4):1753-1766. doi:10.5194/hess-19-1753-2015
apa: Molnar, P., Fatichi, S., Gaál, L., Szolgay, J., & Burlando, P. (2015).
Storm type effects on super Clausius–Clapeyron scaling of intense rainstorm properties
with air temperature. Hydrology and Earth System Sciences. Copernicus Publications.
https://doi.org/10.5194/hess-19-1753-2015
chicago: Molnar, P., Simone Fatichi, L. Gaál, J. Szolgay, and P. Burlando. “Storm
Type Effects on Super Clausius–Clapeyron Scaling of Intense Rainstorm Properties
with Air Temperature.” Hydrology and Earth System Sciences. Copernicus
Publications, 2015. https://doi.org/10.5194/hess-19-1753-2015.
ieee: P. Molnar, S. Fatichi, L. Gaál, J. Szolgay, and P. Burlando, “Storm type effects
on super Clausius–Clapeyron scaling of intense rainstorm properties with air temperature,”
Hydrology and Earth System Sciences, vol. 19, no. 4. Copernicus Publications,
pp. 1753–1766, 2015.
ista: Molnar P, Fatichi S, Gaál L, Szolgay J, Burlando P. 2015. Storm type effects
on super Clausius–Clapeyron scaling of intense rainstorm properties with air temperature.
Hydrology and Earth System Sciences. 19(4), 1753–1766.
mla: Molnar, P., et al. “Storm Type Effects on Super Clausius–Clapeyron Scaling
of Intense Rainstorm Properties with Air Temperature.” Hydrology and Earth
System Sciences, vol. 19, no. 4, Copernicus Publications, 2015, pp. 1753–66,
doi:10.5194/hess-19-1753-2015.
short: P. Molnar, S. Fatichi, L. Gaál, J. Szolgay, P. Burlando, Hydrology and Earth
System Sciences 19 (2015) 1753–1766.
das_tickbox: '1'
date_created: 2026-07-27T12:30:24Z
date_published: 2015-04-16T00:00:00Z
date_updated: 2026-08-06T08:56:50Z
day: '16'
doi: 10.5194/hess-19-1753-2015
extern: '1'
fulldoi: https://doi.org/10.5194/hess-19-1753-2015
intvolume: ' 19'
issue: '4'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/3.0/
main_file_link:
- open_access: '1'
url: https://doi.org/10.5194/hess-19-1753-2015
month: '04'
oa: 1
oa_version: Published Version
page: 1753-1766
publication: Hydrology and Earth System Sciences
publication_identifier:
eissn:
- 1607-7938
issn:
- 1027-5606
publication_status: published
publisher: Copernicus Publications
quality_controlled: '1'
scopus_import: '1'
status: public
title: Storm type effects on super Clausius–Clapeyron scaling of intense rainstorm
properties with air temperature
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/3.0/legalcode
name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)
short: CC BY (3.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 19
year: '2015'
...
---
_id: '1830'
abstract:
- lang: eng
text: To prevent epidemics, insect societies have evolved collective disease defences
that are highly effective at curing exposed individuals and limiting disease transmission
to healthy group members. Grooming is an important sanitary behaviour—either performed
towards oneself (self-grooming) or towards others (allogrooming)—to remove infectious
agents from the body surface of exposed individuals, but at the risk of disease
contraction by the groomer. We use garden ants (Lasius neglectus) and the fungal
pathogen Metarhizium as a model system to study how pathogen presence affects
self-grooming and allogrooming between exposed and healthy individuals. We develop
an epidemiological SIS model to explore how experimentally observed grooming patterns
affect disease spread within the colony, thereby providing a direct link between
the expression and direction of sanitary behaviours, and their effects on colony-level
epidemiology. We find that fungus-exposed ants increase self-grooming, while simultaneously
decreasing allogrooming. This behavioural modulation seems universally adaptive
and is predicted to contain disease spread in a great variety of host–pathogen
systems. In contrast, allogrooming directed towards pathogen-exposed individuals
might both increase and decrease disease risk. Our model reveals that the effect
of allogrooming depends on the balance between pathogen infectiousness and efficiency
of social host defences, which are likely to vary across host–pathogen systems.
acknowledgement: We thank Meghan L. Vyleta for the genetical fungal strain characterization
and Eva Sixt for ant drawings, Matthias Konrad for discussion and Christopher D.
Pull, Barbara Casillas-Peréz, Sebastian Novak, as well as three anonymous reviewers
and the theme issue editors Peter Kappeler and Charlie Nunn for valuable comments
on the manuscript.
article_processing_charge: No
article_type: original
author:
- first_name: Fabian
full_name: Theis, Fabian
last_name: Theis
- first_name: Line V
full_name: Ugelvig, Line V
id: 3DC97C8E-F248-11E8-B48F-1D18A9856A87
last_name: Ugelvig
orcid: 0000-0003-1832-8883
- first_name: Carsten
full_name: Marr, Carsten
last_name: Marr
- first_name: Sylvia
full_name: Cremer, Sylvia
id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
last_name: Cremer
orcid: 0000-0002-2193-3868
citation:
ama: Theis F, Ugelvig LV, Marr C, Cremer S. Opposing effects of allogrooming on
disease transmission in ant societies. Philosophical Transactions of the Royal
Society of London Series B, Biological Sciences. 2015;370(1669). doi:10.1098/rstb.2014.0108
apa: Theis, F., Ugelvig, L. V., Marr, C., & Cremer, S. (2015). Opposing effects
of allogrooming on disease transmission in ant societies. Philosophical Transactions
of the Royal Society of London. Series B, Biological Sciences. Royal Society.
https://doi.org/10.1098/rstb.2014.0108
chicago: Theis, Fabian, Line V Ugelvig, Carsten Marr, and Sylvia Cremer. “Opposing
Effects of Allogrooming on Disease Transmission in Ant Societies.” Philosophical
Transactions of the Royal Society of London. Series B, Biological Sciences.
Royal Society, 2015. https://doi.org/10.1098/rstb.2014.0108.
ieee: F. Theis, L. V. Ugelvig, C. Marr, and S. Cremer, “Opposing effects of allogrooming
on disease transmission in ant societies,” Philosophical Transactions of the
Royal Society of London. Series B, Biological Sciences, vol. 370, no. 1669.
Royal Society, 2015.
ista: Theis F, Ugelvig LV, Marr C, Cremer S. 2015. Opposing effects of allogrooming
on disease transmission in ant societies. Philosophical Transactions of the Royal
Society of London. Series B, Biological Sciences. 370(1669).
mla: Theis, Fabian, et al. “Opposing Effects of Allogrooming on Disease Transmission
in Ant Societies.” Philosophical Transactions of the Royal Society of London.
Series B, Biological Sciences, vol. 370, no. 1669, Royal Society, 2015, doi:10.1098/rstb.2014.0108.
short: F. Theis, L.V. Ugelvig, C. Marr, S. Cremer, Philosophical Transactions of
the Royal Society of London. Series B, Biological Sciences 370 (2015).
corr_author: '1'
date_created: 2018-12-11T11:54:15Z
date_published: 2015-05-26T00:00:00Z
date_updated: 2026-08-12T06:27:32Z
day: '26'
department:
- _id: SyCr
doi: 10.1098/rstb.2014.0108
ec_funded: 1
external_id:
isi:
- '000354143400010'
pmid:
- '25870394'
fulldoi: https://doi.org/10.1098/rstb.2014.0108
intvolume: ' 370'
isi: 1
issue: '1669'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4410374/
month: '05'
oa: 1
oa_version: Submitted Version
pmid: 1
project:
- _id: 25DC711C-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '243071'
name: 'Social Vaccination in Ant Colonies: from Individual Mechanisms to Society
Effects'
- _id: 25DDF0F0-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '302004'
name: 'Collective disease defence and pathogen detection abilities in ant societies:
a chemo-neuro-immunological approach'
- _id: 25E0E184-B435-11E9-9278-68D0E5697425
name: Schnellboot Antnet Junge Akademie
- _id: 25E24DB2-B435-11E9-9278-68D0E5697425
name: Fellowship of Wissenschaftskolleg zu Berlin
publication: Philosophical Transactions of the Royal Society of London. Series B,
Biological Sciences
publication_identifier:
eissn:
- 1471-2970
issn:
- 0962-8436
publication_status: published
publisher: Royal Society
publist_id: '5273'
quality_controlled: '1'
related_material:
record:
- id: '9721'
relation: research_data
status: public
scopus_import: '1'
status: public
title: Opposing effects of allogrooming on disease transmission in ant societies
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 370
year: '2015'
...
---
_id: '9721'
abstract:
- lang: eng
text: To prevent epidemics, insect societies have evolved collective disease defences
that are highly effective at curing exposed individuals and limiting disease transmission
to healthy group members. Grooming is an important sanitary behaviour—either performed
towards oneself (self-grooming) or towards others (allogrooming)—to remove infectious
agents from the body surface of exposed individuals, but at the risk of disease
contraction by the groomer. We use garden ants (Lasius neglectus) and the fungal
pathogen Metarhizium as a model system to study how pathogen presence affects
self-grooming and allogrooming between exposed and healthy individuals. We develop
an epidemiological SIS model to explore how experimentally observed grooming patterns
affect disease spread within the colony, thereby providing a direct link between
the expression and direction of sanitary behaviours, and their effects on colony-level
epidemiology. We find that fungus-exposed ants increase self-grooming, while simultaneously
decreasing allogrooming. This behavioural modulation seems universally adaptive
and is predicted to contain disease spread in a great variety of host–pathogen
systems. In contrast, allogrooming directed towards pathogen-exposed individuals
might both increase and decrease disease risk. Our model reveals that the effect
of allogrooming depends on the balance between pathogen infectiousness and efficiency
of social host defences, which are likely to vary across host–pathogen systems.
article_processing_charge: No
author:
- first_name: Fabian
full_name: Theis, Fabian
last_name: Theis
- first_name: Line V
full_name: Ugelvig, Line V
id: 3DC97C8E-F248-11E8-B48F-1D18A9856A87
last_name: Ugelvig
orcid: 0000-0003-1832-8883
- first_name: Carsten
full_name: Marr, Carsten
last_name: Marr
- first_name: Sylvia
full_name: Cremer, Sylvia
id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
last_name: Cremer
orcid: 0000-0002-2193-3868
citation:
ama: 'Theis F, Ugelvig LV, Marr C, Cremer S. Data from: Opposing effects of allogrooming
on disease transmission in ant societies. 2015. doi:10.5061/dryad.dj2bf'
apa: 'Theis, F., Ugelvig, L. V., Marr, C., & Cremer, S. (2015). Data from: Opposing
effects of allogrooming on disease transmission in ant societies. Dryad. https://doi.org/10.5061/dryad.dj2bf'
chicago: 'Theis, Fabian, Line V Ugelvig, Carsten Marr, and Sylvia Cremer. “Data
from: Opposing Effects of Allogrooming on Disease Transmission in Ant Societies.”
Dryad, 2015. https://doi.org/10.5061/dryad.dj2bf.'
ieee: 'F. Theis, L. V. Ugelvig, C. Marr, and S. Cremer, “Data from: Opposing effects
of allogrooming on disease transmission in ant societies.” Dryad, 2015.'
ista: 'Theis F, Ugelvig LV, Marr C, Cremer S. 2015. Data from: Opposing effects
of allogrooming on disease transmission in ant societies, Dryad, 10.5061/dryad.dj2bf.'
mla: 'Theis, Fabian, et al. Data from: Opposing Effects of Allogrooming on Disease
Transmission in Ant Societies. Dryad, 2015, doi:10.5061/dryad.dj2bf.'
short: F. Theis, L.V. Ugelvig, C. Marr, S. Cremer, (2015).
date_created: 2021-07-26T09:38:36Z
date_published: 2015-12-29T00:00:00Z
date_updated: 2026-08-12T06:27:32Z
day: '29'
department:
- _id: SyCr
doi: 10.5061/dryad.dj2bf
fulldoi: https://doi.org/10.5061/dryad.dj2bf
main_file_link:
- open_access: '1'
url: https://doi.org/10.5061/dryad.dj2bf
month: '12'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
record:
- id: '1830'
relation: used_in_publication
status: public
status: public
title: 'Data from: Opposing effects of allogrooming on disease transmission in ant
societies'
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2015'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '22585'
abstract:
- lang: eng
text: Most of the currently experienced global environmental changes (rising atmospheric
CO2 concentrations, warming, altered amount and pattern of precipitation, and
increased nutrient load) directly or indirectly affect ecosystem surface energy
balance and plant transpiration. As a consequence, the relative humidity of the
air surrounding the vegetation changes, thus creating a feedback loop whose net
effect on transpiration and finally productivity is not trivial to quantify. Forcedly,
in any global change experiment with the above drivers, we can only treat small
plots, or ‘islands’, of vegetation. This means that the treated plots will likely
experience the ambient humidity conditions influenced by the surrounding, non-treated
vegetation. Experimental assessments of global change effects will thus systematically
lack modifications originating from these potentially important feedback mechanisms,
introducing a bias of unknown magnitude in all measurements of processes directly
or indirectly depending on plant transpiration. We call this potential bias the
‘island effect’. Here, we discuss its implications in various global change experiments
with plants. We also suggest ways to complement experiments using modelling approaches
and observational studies. Ultimately, there is no obvious solution to deal with
the island effect in field experiments and only models can provide an estimate
of modification of responses by these feedbacks. However, we suggest that increasing
the awareness of the island effect among both experimental researchers and modellers
will greatly improve the interpretation of vegetation responses to global change.
article_number: plv092
article_processing_charge: No
article_type: original
author:
- first_name: Sebastian
full_name: Leuzinger, Sebastian
last_name: Leuzinger
- first_name: Simone
full_name: Fatichi, Simone
id: cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6
last_name: Fatichi
- first_name: Jarrod
full_name: Cusens, Jarrod
last_name: Cusens
- first_name: Christian
full_name: Körner, Christian
last_name: Körner
- first_name: Pascal A.
full_name: Niklaus, Pascal A.
last_name: Niklaus
citation:
ama: 'Leuzinger S, Fatichi S, Cusens J, Körner C, Niklaus PA. The ‘island effect’
in terrestrial global change experiments: a problem with no solution? AoB Plants.
2015;7. doi:10.1093/aobpla/plv092'
apa: 'Leuzinger, S., Fatichi, S., Cusens, J., Körner, C., & Niklaus, P. A. (2015).
The ‘island effect’ in terrestrial global change experiments: a problem with no
solution? AoB Plants. Oxford University Press. https://doi.org/10.1093/aobpla/plv092'
chicago: 'Leuzinger, Sebastian, Simone Fatichi, Jarrod Cusens, Christian Körner,
and Pascal A. Niklaus. “The ‘Island Effect’ in Terrestrial Global Change Experiments:
A Problem with No Solution?” AoB Plants. Oxford University Press, 2015.
https://doi.org/10.1093/aobpla/plv092.'
ieee: 'S. Leuzinger, S. Fatichi, J. Cusens, C. Körner, and P. A. Niklaus, “The ‘island
effect’ in terrestrial global change experiments: a problem with no solution?,”
AoB Plants, vol. 7. Oxford University Press, 2015.'
ista: 'Leuzinger S, Fatichi S, Cusens J, Körner C, Niklaus PA. 2015. The ‘island
effect’ in terrestrial global change experiments: a problem with no solution?
AoB Plants. 7, plv092.'
mla: 'Leuzinger, Sebastian, et al. “The ‘Island Effect’ in Terrestrial Global Change
Experiments: A Problem with No Solution?” AoB Plants, vol. 7, plv092, Oxford
University Press, 2015, doi:10.1093/aobpla/plv092.'
short: S. Leuzinger, S. Fatichi, J. Cusens, C. Körner, P.A. Niklaus, AoB Plants
7 (2015).
das_tickbox: '1'
date_created: 2026-07-27T12:30:25Z
date_published: 2015-07-27T00:00:00Z
date_updated: 2026-08-12T08:09:20Z
day: '27'
doi: 10.1093/aobpla/plv092
extern: '1'
external_id:
pmid:
- '26216468'
fulldoi: https://doi.org/10.1093/aobpla/plv092
intvolume: ' 7'
keyword:
- DGVM
- Elevated CO2
- FACE
- Hydrology
- Land–atmosphere coupling
- Vegetation feedback effects
- Warming
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
main_file_link:
- open_access: '1'
url: https://doi.org/10.1093/aobpla/plv092
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
publication: AoB Plants
publication_identifier:
eissn:
- 2041-2851
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The ‘island effect’ in terrestrial global change experiments: a problem with
no solution?'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 7
year: '2015'
...
---
OA_type: closed access
_id: '22471'
abstract:
- lang: eng
text: Extreme climate conditions can dramatically alter ecosystems and are expected
to become more common in thefuture; however, our understanding of species and
ecosystem responses to extreme conditions is limited. Wemust meet this challenge
by designing experiments that cover broad ranges of environmental stress, extendingto
levels well beyond those observed currently. Such experiments are important because
they can identify phys-iological, community, and biogeochemical thresholds, and
improve our understanding of mechanistic ecologi-cal responses to climate extremes.
Although natural environmental gradients can be used to observe a range ofecological
responses, manipulation experiments – including those that impose drought and
heat gradients – arenecessary to induce variation beyond common limits. Importantly,
manipulation experiments allow for deter-mination of the cause and effect of species
and ecosystem threshold responses. We present a rationale and rec-ommendations
for conducting extreme experiments that extend beyond the historical and even
the predictedranges of environmental conditions.
article_processing_charge: No
article_type: original
author:
- first_name: Zachary E
full_name: Kayler, Zachary E
last_name: Kayler
- first_name: Hans J
full_name: De Boeck, Hans J
last_name: De Boeck
- first_name: Simone
full_name: Fatichi, Simone
id: cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6
last_name: Fatichi
- first_name: José M
full_name: Grünzweig, José M
last_name: Grünzweig
- first_name: Lutz
full_name: Merbold, Lutz
last_name: Merbold
- first_name: Claus
full_name: Beier, Claus
last_name: Beier
- first_name: Nathan
full_name: McDowell, Nathan
last_name: McDowell
- first_name: Jeffrey S
full_name: Dukes, Jeffrey S
last_name: Dukes
citation:
ama: Kayler ZE, De Boeck HJ, Fatichi S, et al. Experiments to confront the environmental
extremes of climate change. Frontiers in Ecology and the Environment. 2015;13(4):219-225.
doi:10.1890/140174
apa: Kayler, Z. E., De Boeck, H. J., Fatichi, S., Grünzweig, J. M., Merbold, L.,
Beier, C., … Dukes, J. S. (2015). Experiments to confront the environmental extremes
of climate change. Frontiers in Ecology and the Environment. Wiley. https://doi.org/10.1890/140174
chicago: Kayler, Zachary E, Hans J De Boeck, Simone Fatichi, José M Grünzweig, Lutz
Merbold, Claus Beier, Nathan McDowell, and Jeffrey S Dukes. “Experiments to Confront
the Environmental Extremes of Climate Change.” Frontiers in Ecology and the
Environment. Wiley, 2015. https://doi.org/10.1890/140174.
ieee: Z. E. Kayler et al., “Experiments to confront the environmental extremes
of climate change,” Frontiers in Ecology and the Environment, vol. 13,
no. 4. Wiley, pp. 219–225, 2015.
ista: Kayler ZE, De Boeck HJ, Fatichi S, Grünzweig JM, Merbold L, Beier C, McDowell
N, Dukes JS. 2015. Experiments to confront the environmental extremes of climate
change. Frontiers in Ecology and the Environment. 13(4), 219–225.
mla: Kayler, Zachary E., et al. “Experiments to Confront the Environmental Extremes
of Climate Change.” Frontiers in Ecology and the Environment, vol. 13,
no. 4, Wiley, 2015, pp. 219–25, doi:10.1890/140174.
short: Z.E. Kayler, H.J. De Boeck, S. Fatichi, J.M. Grünzweig, L. Merbold, C. Beier,
N. McDowell, J.S. Dukes, Frontiers in Ecology and the Environment 13 (2015) 219–225.
das_tickbox: '1'
date_created: 2026-07-27T12:30:23Z
date_published: 2015-05-01T00:00:00Z
date_updated: 2026-08-12T13:41:24Z
day: '01'
doi: 10.1890/140174
extern: '1'
fulldoi: https://doi.org/10.1890/140174
intvolume: ' 13'
issue: '4'
language:
- iso: eng
month: '05'
oa_version: None
page: 219-225
publication: Frontiers in Ecology and the Environment
publication_identifier:
eissn:
- 1540-9309
issn:
- 1540-9295
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Experiments to confront the environmental extremes of climate change
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 13
year: '2015'
...
---
OA_type: closed access
_id: '22493'
abstract:
- lang: eng
text: Predictions of a warmer climate over the Great Lakes region due to global
change generally agree on the magnitude of temperature changes, but precipitation
projections exhibit dependence on which General Circulation Models and emission
scenarios are chosen. To minimize model- and scenario-specific biases, we combined
information provided by the 3rd phase of the Coupled Model Intercomparison Project
database. Specifically, the results of 12 GCMs for three emission scenarios B1,
A1B, and A2 were analyzed for mid- (2046–2065) and end-century (2081–2100) intervals,
for six locations of a hydroclimatic transect of Michigan. As a result of Bayesian
Weighted Averaging, total annual precipitation averaged over all locations and
the three emission scenarios increases by 7 % (mid-)–10 % (end-century), as compared
to the control period (1961–1990). The projected changes across seasons are non-uniform
and precipitation decreases by 3 % (mid-)–5 % (end-) for the months of August
and September are likely. Further, average temperature is very likely to increase
by 2.02–2.85 °C by the mid-century and 2.58–4.73 °C by the end-century. Three
types of non-additive uncertainty sources due to climate models, anthropogenic
forcings, and climate internal variability are addressed. When compared to the
emission uncertainty, the relative magnitudes of the uncertainty types for climate
model ensemble and internal variability are 149 and 225 % for mean monthly precipitation,
and they are respectively 127 and 123 % for mean monthly temperature. A decreasing
trend of the frost days and an increasing trend of the growing season length are
identified. Also, a significant increase in the magnitude and frequency of heavy
rainfall events is projected, with relatively more pronounced changes for heavy
hourly rainfall as compared to daily events. Quantifying the inherent natural
uncertainty and projecting hourly-based extremes, the study results deliver useful
information for water resource stakeholders interested in impacts of climate change
on hydro-morphological processes.
article_processing_charge: No
article_type: original
author:
- first_name: Jongho
full_name: Kim, Jongho
last_name: Kim
- first_name: Valeriy Y.
full_name: Ivanov, Valeriy Y.
last_name: Ivanov
- first_name: Simone
full_name: Fatichi, Simone
id: cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6
last_name: Fatichi
citation:
ama: Kim J, Ivanov VY, Fatichi S. Climate change and uncertainty assessment over
a hydroclimatic transect of Michigan. Stochastic Environmental Research and
Risk Assessment. 2015;30(3):923-944. doi:10.1007/s00477-015-1097-2
apa: Kim, J., Ivanov, V. Y., & Fatichi, S. (2015). Climate change and uncertainty
assessment over a hydroclimatic transect of Michigan. Stochastic Environmental
Research and Risk Assessment. Springer Nature. https://doi.org/10.1007/s00477-015-1097-2
chicago: Kim, Jongho, Valeriy Y. Ivanov, and Simone Fatichi. “Climate Change and
Uncertainty Assessment over a Hydroclimatic Transect of Michigan.” Stochastic
Environmental Research and Risk Assessment. Springer Nature, 2015. https://doi.org/10.1007/s00477-015-1097-2.
ieee: J. Kim, V. Y. Ivanov, and S. Fatichi, “Climate change and uncertainty assessment
over a hydroclimatic transect of Michigan,” Stochastic Environmental Research
and Risk Assessment, vol. 30, no. 3. Springer Nature, pp. 923–944, 2015.
ista: Kim J, Ivanov VY, Fatichi S. 2015. Climate change and uncertainty assessment
over a hydroclimatic transect of Michigan. Stochastic Environmental Research and
Risk Assessment. 30(3), 923–944.
mla: Kim, Jongho, et al. “Climate Change and Uncertainty Assessment over a Hydroclimatic
Transect of Michigan.” Stochastic Environmental Research and Risk Assessment,
vol. 30, no. 3, Springer Nature, 2015, pp. 923–44, doi:10.1007/s00477-015-1097-2.
short: J. Kim, V.Y. Ivanov, S. Fatichi, Stochastic Environmental Research and Risk
Assessment 30 (2015) 923–944.
das_tickbox: '1'
date_created: 2026-07-27T12:30:23Z
date_published: 2015-06-16T00:00:00Z
date_updated: 2026-08-12T13:55:28Z
day: '16'
doi: 10.1007/s00477-015-1097-2
extern: '1'
fulldoi: https://doi.org/10.1007/s00477-015-1097-2
intvolume: ' 30'
issue: '3'
keyword:
- Climate change
- Weather generator
- Stochastic downscaling
- Uncertainty
- CMIP3
- Internal variability
- Emission scenarios
- Extreme indicators
- The Great Lakes region
language:
- iso: eng
month: '06'
oa_version: None
page: 923-944
publication: Stochastic Environmental Research and Risk Assessment
publication_identifier:
eissn:
- 1436-3259
issn:
- 1436-3240
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Climate change and uncertainty assessment over a hydroclimatic transect of
Michigan
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 30
year: '2015'
...
---
_id: '1811'
abstract:
- lang: eng
text: Atomic form factors are widely used for the characterization of targets and
specimens, from crystallography to biology. By using recent mathematical results,
here we derive an analytical expression for the atomic form factor within the
independent particle model constructed from nonrelativistic screened hydrogenic
wave functions. The range of validity of this analytical expression is checked
by comparing the analytically obtained form factors with the ones obtained within
the Hartee-Fock method. As an example, we apply our analytical expression for
the atomic form factor to evaluate the differential cross section for Rayleigh
scattering off neutral atoms.
acknowledgement: The research leading to these results has received funding from the
People Programme (Marie Curie Actions) of the European Union’s Seventh Framework
Programme (FP7/2007-2013) under REA grant agreement n◦ [291734]. F.F. acknowledges
support by Fundação de Amparo à Pesquisa do estado de Minas Gerais (FAPEMIG), by
Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq), and by the
Austrian Science Fund (FWF) through the START Grant No. Y 591-N16.
article_number: '052105'
article_processing_charge: No
arxiv: 1
author:
- first_name: Laleh
full_name: Safari, Laleh
id: 3C325E5E-F248-11E8-B48F-1D18A9856A87
last_name: Safari
- first_name: José
full_name: Santos, José
last_name: Santos
- first_name: Pedro
full_name: Amaro, Pedro
last_name: Amaro
- first_name: Kari
full_name: Jänkälä, Kari
last_name: Jänkälä
- first_name: Filippo
full_name: Fratini, Filippo
last_name: Fratini
citation:
ama: 'Safari L, Santos J, Amaro P, Jänkälä K, Fratini F. Analytical evaluation of
atomic form factors: Application to Rayleigh scattering. Journal of Mathematical
Physics. 2015;56(5). doi:10.1063/1.4921227'
apa: 'Safari, L., Santos, J., Amaro, P., Jänkälä, K., & Fratini, F. (2015).
Analytical evaluation of atomic form factors: Application to Rayleigh scattering.
Journal of Mathematical Physics. AIP Publishing. https://doi.org/10.1063/1.4921227'
chicago: 'Safari, Laleh, José Santos, Pedro Amaro, Kari Jänkälä, and Filippo Fratini.
“Analytical Evaluation of Atomic Form Factors: Application to Rayleigh Scattering.”
Journal of Mathematical Physics. AIP Publishing, 2015. https://doi.org/10.1063/1.4921227.'
ieee: 'L. Safari, J. Santos, P. Amaro, K. Jänkälä, and F. Fratini, “Analytical evaluation
of atomic form factors: Application to Rayleigh scattering,” Journal of Mathematical
Physics, vol. 56, no. 5. AIP Publishing, 2015.'
ista: 'Safari L, Santos J, Amaro P, Jänkälä K, Fratini F. 2015. Analytical evaluation
of atomic form factors: Application to Rayleigh scattering. Journal of Mathematical
Physics. 56(5), 052105.'
mla: 'Safari, Laleh, et al. “Analytical Evaluation of Atomic Form Factors: Application
to Rayleigh Scattering.” Journal of Mathematical Physics, vol. 56, no.
5, 052105, AIP Publishing, 2015, doi:10.1063/1.4921227.'
short: L. Safari, J. Santos, P. Amaro, K. Jänkälä, F. Fratini, Journal of Mathematical
Physics 56 (2015).
corr_author: '1'
date_created: 2018-12-11T11:54:08Z
date_published: 2015-05-20T00:00:00Z
date_updated: 2026-08-12T13:58:42Z
day: '20'
department:
- _id: MiLe
doi: 10.1063/1.4921227
ec_funded: 1
external_id:
arxiv:
- '1409.0110'
isi:
- '000355920800016'
fulldoi: https://doi.org/10.1063/1.4921227
intvolume: ' 56'
isi: 1
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1409.0110
month: '05'
oa: 1
oa_version: Preprint
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '291734'
name: International IST Postdoc Fellowship Programme
publication: Journal of Mathematical Physics
publication_status: published
publisher: AIP Publishing
publist_id: '5295'
scopus_import: '1'
status: public
title: 'Analytical evaluation of atomic form factors: Application to Rayleigh scattering'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 56
year: '2015'
...
---
_id: '1677'
abstract:
- lang: eng
text: We consider real symmetric and complex Hermitian random matrices with the
additional symmetry hxy = hN-y,N-x. The matrix elements are independent (up to
the fourfold symmetry) and not necessarily identically distributed. This ensemble
naturally arises as the Fourier transform of a Gaussian orthogonal ensemble. Italso
occurs as the flip matrix model - an approximation of the two-dimensional Anderson
model at small disorder. We show that the density of states converges to the Wigner
semicircle law despite the new symmetry type. We also prove the local version
of the semicircle law on the optimal scale.
article_number: '103301'
article_processing_charge: No
arxiv: 1
author:
- first_name: Johannes
full_name: Alt, Johannes
id: 36D3D8B6-F248-11E8-B48F-1D18A9856A87
last_name: Alt
citation:
ama: Alt J. The local semicircle law for random matrices with a fourfold symmetry.
Journal of Mathematical Physics. 2015;56(10). doi:10.1063/1.4932606
apa: Alt, J. (2015). The local semicircle law for random matrices with a fourfold
symmetry. Journal of Mathematical Physics. AIP Publishing. https://doi.org/10.1063/1.4932606
chicago: Alt, Johannes. “The Local Semicircle Law for Random Matrices with a Fourfold
Symmetry.” Journal of Mathematical Physics. AIP Publishing, 2015. https://doi.org/10.1063/1.4932606.
ieee: J. Alt, “The local semicircle law for random matrices with a fourfold symmetry,”
Journal of Mathematical Physics, vol. 56, no. 10. AIP Publishing, 2015.
ista: Alt J. 2015. The local semicircle law for random matrices with a fourfold
symmetry. Journal of Mathematical Physics. 56(10), 103301.
mla: Alt, Johannes. “The Local Semicircle Law for Random Matrices with a Fourfold
Symmetry.” Journal of Mathematical Physics, vol. 56, no. 10, 103301, AIP
Publishing, 2015, doi:10.1063/1.4932606.
short: J. Alt, Journal of Mathematical Physics 56 (2015).
corr_author: '1'
date_created: 2018-12-11T11:53:25Z
date_published: 2015-10-09T00:00:00Z
date_updated: 2026-08-12T13:58:57Z
day: '09'
department:
- _id: LaEr
doi: 10.1063/1.4932606
ec_funded: 1
external_id:
arxiv:
- '1506.04683'
isi:
- '000364237000026'
fulldoi: https://doi.org/10.1063/1.4932606
intvolume: ' 56'
isi: 1
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1506.04683
month: '10'
oa: 1
oa_version: Preprint
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '338804'
name: Random matrices, universality and disordered quantum systems
publication: Journal of Mathematical Physics
publication_status: published
publisher: AIP Publishing
publist_id: '5472'
quality_controlled: '1'
related_material:
record:
- id: '149'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: The local semicircle law for random matrices with a fourfold symmetry
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 56
year: '2015'
...
---
OA_place: publisher
OA_type: free access
_id: '22494'
abstract:
- lang: eng
text: Changes in near-surface humidity are evaluated in relation to changes in other
meteorological variables such as air temperature, precipitation, and sunshine
duration for a 31 year period (1981–2011) using hourly time series recorded in
Switzerland. Trends in meteorological variables are analyzed at the seasonal and
subdaily scale, and changes in water vapor are tested for Clausius-Clapeyron scaling.
Results show a marked seasonality of climatic changes with a trend toward warmer,
clearer, and drier near-surface atmosphere strengthening from January to June.
During this period considerable negative trends in relative humidity are detected.
An abrupt shift in climatic trends occurs during the month of July, after which
warming trends are considerably smaller and relative humidity remains constant
or increases. An evaluation of reanalysis products demonstrates strong consistency
with station observations and when combined with teleconnection indices supports
the hypothesis that shifts in the general circulation patterns rather than local
feedbacks are the principal drivers of observed seasonality of climate change.
However, local feedbacks can play a role in enhancing summer humidity and convective
activity (lightning and evening precipitation). Subdaily changes are significant
with more pronounced daytime trends of temperature and humidity during spring
and the opposite during summer. The strong seasonality and diurnal variability
of changes in near-surface meteorology over the last three decades in Switzerland
warns against climate change impact assessments at local scale that consider uniform
changes in air temperature and assume Clausius-Clapeyron scaling for near-surface
humidity.
article_processing_charge: No
article_type: original
author:
- first_name: Simone
full_name: Fatichi, Simone
id: cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6
last_name: Fatichi
- first_name: Peter
full_name: Molnar, Peter
last_name: Molnar
- first_name: Theodoros
full_name: Mastrotheodoros, Theodoros
last_name: Mastrotheodoros
- first_name: Paolo
full_name: Burlando, Paolo
last_name: Burlando
citation:
ama: 'Fatichi S, Molnar P, Mastrotheodoros T, Burlando P. Diurnal and seasonal changes
in near‐surface humidity in a complex orography. Journal of Geophysical Research:
Atmospheres. 2015;120(6):2358-2374. doi:10.1002/2014jd022537'
apa: 'Fatichi, S., Molnar, P., Mastrotheodoros, T., & Burlando, P. (2015). Diurnal
and seasonal changes in near‐surface humidity in a complex orography. Journal
of Geophysical Research: Atmospheres. American Geophysical Union. https://doi.org/10.1002/2014jd022537'
chicago: 'Fatichi, Simone, Peter Molnar, Theodoros Mastrotheodoros, and Paolo Burlando.
“Diurnal and Seasonal Changes in Near‐surface Humidity in a Complex Orography.”
Journal of Geophysical Research: Atmospheres. American Geophysical Union,
2015. https://doi.org/10.1002/2014jd022537.'
ieee: 'S. Fatichi, P. Molnar, T. Mastrotheodoros, and P. Burlando, “Diurnal and
seasonal changes in near‐surface humidity in a complex orography,” Journal
of Geophysical Research: Atmospheres, vol. 120, no. 6. American Geophysical
Union, pp. 2358–2374, 2015.'
ista: 'Fatichi S, Molnar P, Mastrotheodoros T, Burlando P. 2015. Diurnal and seasonal
changes in near‐surface humidity in a complex orography. Journal of Geophysical
Research: Atmospheres. 120(6), 2358–2374.'
mla: 'Fatichi, Simone, et al. “Diurnal and Seasonal Changes in Near‐surface Humidity
in a Complex Orography.” Journal of Geophysical Research: Atmospheres,
vol. 120, no. 6, American Geophysical Union, 2015, pp. 2358–74, doi:10.1002/2014jd022537.'
short: 'S. Fatichi, P. Molnar, T. Mastrotheodoros, P. Burlando, Journal of Geophysical
Research: Atmospheres 120 (2015) 2358–2374.'
das_tickbox: '1'
date_created: 2026-07-27T12:30:23Z
date_published: 2015-03-27T00:00:00Z
date_updated: 2026-08-12T14:08:33Z
day: '27'
doi: 10.1002/2014jd022537
extern: '1'
fulldoi: https://doi.org/10.1002/2014jd022537
intvolume: ' 120'
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1002/2014JD022537
month: '03'
oa: 1
oa_version: Published Version
page: 2358-2374
publication: 'Journal of Geophysical Research: Atmospheres'
publication_identifier:
eissn:
- 2169-8996
issn:
- 2169-897X
publication_status: published
publisher: American Geophysical Union
quality_controlled: '1'
scopus_import: '1'
status: public
title: Diurnal and seasonal changes in near‐surface humidity in a complex orography
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 120
year: '2015'
...
---
_id: '1587'
abstract:
- lang: eng
text: We investigate the quantum interference shifts between energetically close
states, where the state structure is observed by laser spectroscopy. We report
a compact and analytical expression that models the quantum interference induced
shift for any admixture of circular polarization of the incident laser and angle
of observation. An experimental scenario free of quantum interference can thus
be predicted with this formula. Although this study is exemplified here for muonic
deuterium, it can be applied to any other laser spectroscopy measurement of ns-n′p
frequencies of a nonrelativistic atomic system, via an ns→n′p→n′′s scheme.
article_number: '062506'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Pedro
full_name: Amaro, Pedro
last_name: Amaro
- first_name: Filippo
full_name: Fratini, Filippo
last_name: Fratini
- first_name: Laleh
full_name: Safari, Laleh
id: 3C325E5E-F248-11E8-B48F-1D18A9856A87
last_name: Safari
- first_name: Aldo
full_name: Antognini, Aldo
last_name: Antognini
- first_name: Paul
full_name: Indelicato, Paul
last_name: Indelicato
- first_name: Randolf
full_name: Pohl, Randolf
last_name: Pohl
- first_name: José
full_name: Santos, José
last_name: Santos
citation:
ama: Amaro P, Fratini F, Safari L, et al. Quantum interference shifts in laser spectroscopy
with elliptical polarization. Physical Review A. 2015;92(6). doi:10.1103/PhysRevA.92.062506
apa: Amaro, P., Fratini, F., Safari, L., Antognini, A., Indelicato, P., Pohl, R.,
& Santos, J. (2015). Quantum interference shifts in laser spectroscopy with
elliptical polarization. Physical Review A. American Physical Society.
https://doi.org/10.1103/PhysRevA.92.062506
chicago: Amaro, Pedro, Filippo Fratini, Laleh Safari, Aldo Antognini, Paul Indelicato,
Randolf Pohl, and José Santos. “Quantum Interference Shifts in Laser Spectroscopy
with Elliptical Polarization.” Physical Review A. American Physical Society,
2015. https://doi.org/10.1103/PhysRevA.92.062506.
ieee: P. Amaro et al., “Quantum interference shifts in laser spectroscopy
with elliptical polarization,” Physical Review A, vol. 92, no. 6. American
Physical Society, 2015.
ista: Amaro P, Fratini F, Safari L, Antognini A, Indelicato P, Pohl R, Santos J.
2015. Quantum interference shifts in laser spectroscopy with elliptical polarization.
Physical Review A. 92(6), 062506.
mla: Amaro, Pedro, et al. “Quantum Interference Shifts in Laser Spectroscopy with
Elliptical Polarization.” Physical Review A, vol. 92, no. 6, 062506, American
Physical Society, 2015, doi:10.1103/PhysRevA.92.062506.
short: P. Amaro, F. Fratini, L. Safari, A. Antognini, P. Indelicato, R. Pohl, J.
Santos, Physical Review A 92 (2015).
date_created: 2018-12-11T11:52:53Z
date_published: 2015-12-31T00:00:00Z
date_updated: 2026-08-12T14:20:30Z
day: '31'
department:
- _id: MiLe
doi: 10.1103/PhysRevA.92.062506
ec_funded: 1
external_id:
arxiv:
- '1511.03585'
isi:
- '000367373900002'
fulldoi: https://doi.org/10.1103/PhysRevA.92.062506
intvolume: ' 92'
isi: 1
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1511.03585
month: '12'
oa: 1
oa_version: Preprint
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '291734'
name: International IST Postdoc Fellowship Programme
publication: Physical Review A
publication_status: published
publisher: American Physical Society
publist_id: '5584'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Quantum interference shifts in laser spectroscopy with elliptical polarization
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 92
year: '2015'
...
---
_id: '1940'
abstract:
- lang: eng
text: We typically think of cells as responding to external signals independently
by regulating their gene expression levels, yet they often locally exchange information
and coordinate. Can such spatial coupling be of benefit for conveying signals
subject to gene regulatory noise? Here we extend our information-theoretic framework
for gene regulation to spatially extended systems. As an example, we consider
a lattice of nuclei responding to a concentration field of a transcriptional regulator
(the "input") by expressing a single diffusible target gene. When input
concentrations are low, diffusive coupling markedly improves information transmission;
optimal gene activation functions also systematically change. A qualitatively
new regulatory strategy emerges where individual cells respond to the input in
a nearly step-like fashion that is subsequently averaged out by strong diffusion.
While motivated by early patterning events in the Drosophila embryo, our framework
is generically applicable to spatially coupled stochastic gene expression models.
article_number: '062710'
article_processing_charge: No
arxiv: 1
author:
- first_name: Thomas R
full_name: Sokolowski, Thomas R
id: 3E999752-F248-11E8-B48F-1D18A9856A87
last_name: Sokolowski
orcid: 0000-0002-1287-3779
- first_name: Gasper
full_name: Tkacik, Gasper
id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
last_name: Tkacik
orcid: 0000-0002-6699-1455
citation:
ama: Sokolowski TR, Tkačik G. Optimizing information flow in small genetic networks.
IV. Spatial coupling. Physical Review E. 2015;91(6). doi:10.1103/PhysRevE.91.062710
apa: Sokolowski, T. R., & Tkačik, G. (2015). Optimizing information flow in
small genetic networks. IV. Spatial coupling. Physical Review E. American
Physical Society. https://doi.org/10.1103/PhysRevE.91.062710
chicago: Sokolowski, Thomas R, and Gašper Tkačik. “Optimizing Information Flow in
Small Genetic Networks. IV. Spatial Coupling.” Physical Review E. American
Physical Society, 2015. https://doi.org/10.1103/PhysRevE.91.062710.
ieee: T. R. Sokolowski and G. Tkačik, “Optimizing information flow in small genetic
networks. IV. Spatial coupling,” Physical Review E, vol. 91, no. 6. American
Physical Society, 2015.
ista: Sokolowski TR, Tkačik G. 2015. Optimizing information flow in small genetic
networks. IV. Spatial coupling. Physical Review E. 91(6), 062710.
mla: Sokolowski, Thomas R., and Gašper Tkačik. “Optimizing Information Flow in Small
Genetic Networks. IV. Spatial Coupling.” Physical Review E, vol. 91, no.
6, 062710, American Physical Society, 2015, doi:10.1103/PhysRevE.91.062710.
short: T.R. Sokolowski, G. Tkačik, Physical Review E 91 (2015).
corr_author: '1'
date_created: 2018-12-11T11:54:49Z
date_published: 2015-06-15T00:00:00Z
date_updated: 2026-08-12T14:28:08Z
day: '15'
department:
- _id: GaTk
doi: 10.1103/PhysRevE.91.062710
external_id:
arxiv:
- '1501.04015'
isi:
- '000356131600006'
fulldoi: https://doi.org/10.1103/PhysRevE.91.062710
intvolume: ' 91'
isi: 1
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1501.04015
month: '06'
oa: 1
oa_version: Preprint
publication: Physical Review E
publication_status: published
publisher: American Physical Society
publist_id: '5145'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Optimizing information flow in small genetic networks. IV. Spatial coupling
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 91
year: '2015'
...
---
_id: '1883'
abstract:
- lang: eng
text: "We introduce a one-parametric family of tree growth models, in which branching
probabilities decrease with branch age τ as τ-α. Depending on the exponent α,
the scaling of tree depth with tree size n displays a transition between the logarithmic
scaling of random trees and an algebraic growth. At the transition (α=1) tree
depth grows as (logn)2. This anomalous scaling is in good agreement with the trend
observed in evolution of biological species, thus providing a theoretical support
for age-dependent speciation and associating it to the occurrence of a critical
point.\r\n"
article_number: '022803'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Stephanie
full_name: Keller-Schmidt, Stephanie
last_name: Keller-Schmidt
- first_name: Murat
full_name: Tugrul, Murat
id: 37C323C6-F248-11E8-B48F-1D18A9856A87
last_name: Tugrul
orcid: 0000-0002-8523-0758
- first_name: Víctor
full_name: Eguíluz, Víctor
last_name: Eguíluz
- first_name: Emilio
full_name: Hernandez Garcia, Emilio
last_name: Hernandez Garcia
- first_name: Konstantin
full_name: Klemm, Konstantin
last_name: Klemm
citation:
ama: Keller-Schmidt S, Tugrul M, Eguíluz V, Hernandez Garcia E, Klemm K. Anomalous
scaling in an age-dependent branching model. Physical Review E. 2015;91(2).
doi:10.1103/PhysRevE.91.022803
apa: Keller-Schmidt, S., Tugrul, M., Eguíluz, V., Hernandez Garcia, E., & Klemm,
K. (2015). Anomalous scaling in an age-dependent branching model. Physical
Review E. American Physical Society. https://doi.org/10.1103/PhysRevE.91.022803
chicago: Keller-Schmidt, Stephanie, Murat Tugrul, Víctor Eguíluz, Emilio Hernandez
Garcia, and Konstantin Klemm. “Anomalous Scaling in an Age-Dependent Branching
Model.” Physical Review E. American Physical Society, 2015. https://doi.org/10.1103/PhysRevE.91.022803.
ieee: S. Keller-Schmidt, M. Tugrul, V. Eguíluz, E. Hernandez Garcia, and K. Klemm,
“Anomalous scaling in an age-dependent branching model,” Physical Review E,
vol. 91, no. 2. American Physical Society, 2015.
ista: Keller-Schmidt S, Tugrul M, Eguíluz V, Hernandez Garcia E, Klemm K. 2015.
Anomalous scaling in an age-dependent branching model. Physical Review E. 91(2),
022803.
mla: Keller-Schmidt, Stephanie, et al. “Anomalous Scaling in an Age-Dependent Branching
Model.” Physical Review E, vol. 91, no. 2, 022803, American Physical Society,
2015, doi:10.1103/PhysRevE.91.022803.
short: S. Keller-Schmidt, M. Tugrul, V. Eguíluz, E. Hernandez Garcia, K. Klemm,
Physical Review E 91 (2015).
date_created: 2018-12-11T11:54:31Z
date_published: 2015-02-02T00:00:00Z
date_updated: 2026-08-12T14:26:46Z
day: '02'
department:
- _id: NiBa
doi: 10.1103/PhysRevE.91.022803
external_id:
arxiv:
- '1012.3298'
isi:
- '000349860900006'
fulldoi: https://doi.org/10.1103/PhysRevE.91.022803
intvolume: ' 91'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1012.3298
month: '02'
oa: 1
oa_version: Preprint
publication: Physical Review E
publication_status: published
publisher: American Physical Society
publist_id: '5213'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Anomalous scaling in an age-dependent branching model
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 91
year: '2015'
...
---
_id: '1820'
abstract:
- lang: eng
text: 'We consider partially observable Markov decision processes (POMDPs) with
a set of target states and every transition is associated with an integer cost.
The optimization objec- tive we study asks to minimize the expected total cost
till the target set is reached, while ensuring that the target set is reached
almost-surely (with probability 1). We show that for integer costs approximating
the optimal cost is undecidable. For positive costs, our results are as follows:
(i) we establish matching lower and upper bounds for the optimal cost and the
bound is double exponential; (ii) we show that the problem of approximating the
optimal cost is decidable and present ap- proximation algorithms developing on
the existing algorithms for POMDPs with finite-horizon objectives. While the worst-
case running time of our algorithm is double exponential, we present efficient
stopping criteria for the algorithm and show experimentally that it performs well
in many examples.'
acknowledgement: ' The research was partly supported by Austrian Science Fund (FWF)
Grant No P23499-N23, FWF NFN Grant No S11407-N23 (RiSE), ERC Start grant (279307:
Graph Games), and Microsoft faculty fellows award.'
alternative_title:
- Artifical Intelligence
article_processing_charge: No
arxiv: 1
author:
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Martin
full_name: Chmelik, Martin
id: 3624234E-F248-11E8-B48F-1D18A9856A87
last_name: Chmelik
- first_name: Raghav
full_name: Gupta, Raghav
last_name: Gupta
- first_name: Ayush
full_name: Kanodia, Ayush
last_name: Kanodia
citation:
ama: 'Chatterjee K, Chmelik M, Gupta R, Kanodia A. Optimal cost almost-sure reachability
in POMDPs. In: Proceedings of the Twenty-Ninth AAAI Conference on Artificial
Intelligence . Vol 5. AAAI Press; 2015:3496-3502. doi:10.1609/aaai.v29i1.9683'
apa: 'Chatterjee, K., Chmelik, M., Gupta, R., & Kanodia, A. (2015). Optimal
cost almost-sure reachability in POMDPs. In Proceedings of the Twenty-Ninth
AAAI Conference on Artificial Intelligence (Vol. 5, pp. 3496–3502). Austin,
TX, USA: AAAI Press. https://doi.org/10.1609/aaai.v29i1.9683'
chicago: Chatterjee, Krishnendu, Martin Chmelik, Raghav Gupta, and Ayush Kanodia.
“Optimal Cost Almost-Sure Reachability in POMDPs.” In Proceedings of the Twenty-Ninth
AAAI Conference on Artificial Intelligence , 5:3496–3502. AAAI Press, 2015.
https://doi.org/10.1609/aaai.v29i1.9683.
ieee: K. Chatterjee, M. Chmelik, R. Gupta, and A. Kanodia, “Optimal cost almost-sure
reachability in POMDPs,” in Proceedings of the Twenty-Ninth AAAI Conference
on Artificial Intelligence , Austin, TX, USA, 2015, vol. 5, pp. 3496–3502.
ista: 'Chatterjee K, Chmelik M, Gupta R, Kanodia A. 2015. Optimal cost almost-sure
reachability in POMDPs. Proceedings of the Twenty-Ninth AAAI Conference on Artificial
Intelligence . IAAI: Innovative Applications of Artificial Intelligence, Artifical
Intelligence, vol. 5, 3496–3502.'
mla: Chatterjee, Krishnendu, et al. “Optimal Cost Almost-Sure Reachability in POMDPs.”
Proceedings of the Twenty-Ninth AAAI Conference on Artificial Intelligence
, vol. 5, AAAI Press, 2015, pp. 3496–502, doi:10.1609/aaai.v29i1.9683.
short: K. Chatterjee, M. Chmelik, R. Gupta, A. Kanodia, in:, Proceedings of the
Twenty-Ninth AAAI Conference on Artificial Intelligence , AAAI Press, 2015, pp.
3496–3502.
conference:
end_date: 2015-01-30
location: Austin, TX, USA
name: 'IAAI: Innovative Applications of Artificial Intelligence'
start_date: 2015-01-25
corr_author: '1'
date_created: 2018-12-11T11:54:11Z
date_published: 2015-06-01T00:00:00Z
date_updated: 2026-08-19T09:31:47Z
day: '01'
department:
- _id: KrCh
doi: 10.1609/aaai.v29i1.9683
ec_funded: 1
external_id:
arxiv:
- '1411.3880'
isi:
- '000372683700002'
fulldoi: https://doi.org/10.1609/aaai.v29i1.9683
intvolume: ' 5'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1411.3880
month: '06'
oa: 1
oa_version: Preprint
page: 3496-3502
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P 23499-N23
name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S 11407_N23
name: Rigorous Systems Engineering
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '279307'
name: 'Quantitative Graph Games: Theory and Applications'
publication: 'Proceedings of the Twenty-Ninth AAAI Conference on Artificial Intelligence '
publication_status: published
publisher: AAAI Press
publist_id: '5286'
quality_controlled: '1'
related_material:
record:
- id: '1529'
relation: later_version
status: public
scopus_import: '1'
status: public
title: Optimal cost almost-sure reachability in POMDPs
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2015'
...
---
_id: '1619'
abstract:
- lang: eng
text: The emergence of drug resistant pathogens is a serious public health problem.
It is a long-standing goal to predict rates of resistance evolution and design
optimal treatment strategies accordingly. To this end, it is crucial to reveal
the underlying causes of drug-specific differences in the evolutionary dynamics
leading to resistance. However, it remains largely unknown why the rates of resistance
evolution via spontaneous mutations and the diversity of mutational paths vary
substantially between drugs. Here we comprehensively quantify the distribution
of fitness effects (DFE) of mutations, a key determinant of evolutionary dynamics,
in the presence of eight antibiotics representing the main modes of action. Using
precise high-throughput fitness measurements for genome-wide Escherichia coli
gene deletion strains, we find that the width of the DFE varies dramatically between
antibiotics and, contrary to conventional wisdom, for some drugs the DFE width
is lower than in the absence of stress. We show that this previously underappreciated
divergence in DFE width among antibiotics is largely caused by their distinct
drug-specific dose-response characteristics. Unlike the DFE, the magnitude of
the changes in tolerated drug concentration resulting from genome-wide mutations
is similar for most drugs but exceptionally small for the antibiotic nitrofurantoin,
i.e., mutations generally have considerably smaller resistance effects for nitrofurantoin
than for other drugs. A population genetics model predicts that resistance evolution
for drugs with this property is severely limited and confined to reproducible
mutational paths. We tested this prediction in laboratory evolution experiments
using the “morbidostat”, a device for evolving bacteria in well-controlled drug
environments. Nitrofurantoin resistance indeed evolved extremely slowly via reproducible
mutations—an almost paradoxical behavior since this drug causes DNA damage and
increases the mutation rate. Overall, we identified novel quantitative characteristics
of the evolutionary landscape that provide the conceptual foundation for predicting
the dynamics of drug resistance evolution.
article_number: e1002299
article_processing_charge: No
author:
- first_name: Guillaume
full_name: Chevereau, Guillaume
id: 424D78A0-F248-11E8-B48F-1D18A9856A87
last_name: Chevereau
- first_name: Marta
full_name: Dravecka, Marta
id: 4342E402-F248-11E8-B48F-1D18A9856A87
last_name: Dravecka
orcid: 0000-0002-2519-8004
- first_name: Tugce
full_name: Batur, Tugce
last_name: Batur
- first_name: Aysegul
full_name: Guvenek, Aysegul
last_name: Guvenek
- first_name: Dilay
full_name: Ayhan, Dilay
last_name: Ayhan
- first_name: Erdal
full_name: Toprak, Erdal
last_name: Toprak
- first_name: Mark Tobias
full_name: Bollenbach, Mark Tobias
id: 3E6DB97A-F248-11E8-B48F-1D18A9856A87
last_name: Bollenbach
orcid: 0000-0003-4398-476X
citation:
ama: Chevereau G, Lukacisinova M, Batur T, et al. Quantifying the determinants of
evolutionary dynamics leading to drug resistance. PLoS Biology. 2015;13(11).
doi:10.1371/journal.pbio.1002299
apa: Chevereau, G., Lukacisinova, M., Batur, T., Guvenek, A., Ayhan, D., Toprak,
E., & Bollenbach, M. T. (2015). Quantifying the determinants of evolutionary
dynamics leading to drug resistance. PLoS Biology. Public Library of Science.
https://doi.org/10.1371/journal.pbio.1002299
chicago: Chevereau, Guillaume, Marta Lukacisinova, Tugce Batur, Aysegul Guvenek,
Dilay Ayhan, Erdal Toprak, and Mark Tobias Bollenbach. “Quantifying the Determinants
of Evolutionary Dynamics Leading to Drug Resistance.” PLoS Biology. Public
Library of Science, 2015. https://doi.org/10.1371/journal.pbio.1002299.
ieee: G. Chevereau et al., “Quantifying the determinants of evolutionary
dynamics leading to drug resistance,” PLoS Biology, vol. 13, no. 11. Public
Library of Science, 2015.
ista: Chevereau G, Lukacisinova M, Batur T, Guvenek A, Ayhan D, Toprak E, Bollenbach
MT. 2015. Quantifying the determinants of evolutionary dynamics leading to drug
resistance. PLoS Biology. 13(11), e1002299.
mla: Chevereau, Guillaume, et al. “Quantifying the Determinants of Evolutionary
Dynamics Leading to Drug Resistance.” PLoS Biology, vol. 13, no. 11, e1002299,
Public Library of Science, 2015, doi:10.1371/journal.pbio.1002299.
short: G. Chevereau, M. Lukacisinova, T. Batur, A. Guvenek, D. Ayhan, E. Toprak,
M.T. Bollenbach, PLoS Biology 13 (2015).
corr_author: '1'
date_created: 2018-12-11T11:53:04Z
date_published: 2015-11-18T00:00:00Z
date_updated: 2026-10-17T22:31:07Z
day: '18'
ddc:
- '570'
department:
- _id: ToBo
doi: 10.1371/journal.pbio.1002299
ec_funded: 1
external_id:
isi:
- '000365898900011'
file:
- access_level: open_access
checksum: 0e82e3279f50b15c6c170c042627802b
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:09:00Z
date_updated: 2020-07-14T12:45:07Z
file_id: '4723'
file_name: IST-2016-468-v1+1_journal.pbio.1002299.pdf
file_size: 1387760
relation: main_file
file_date_updated: 2020-07-14T12:45:07Z
fulldoi: https://doi.org/10.1371/journal.pbio.1002299
has_accepted_license: '1'
intvolume: ' 13'
isi: 1
issue: '11'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
project:
- _id: 25EB3A80-B435-11E9-9278-68D0E5697425
grant_number: RGP0042/2013
name: Revealing the fundamental limits of cell growth
- _id: 25E9AF9E-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P27201-B22
name: Revealing the mechanisms underlying drug interactions
- _id: 25E83C2C-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '303507'
name: Optimality principles in responses to antibiotics
publication: PLoS Biology
publication_status: published
publisher: Public Library of Science
publist_id: '5547'
pubrep_id: '468'
quality_controlled: '1'
related_material:
record:
- id: '9711'
relation: research_data
status: public
- id: '9765'
relation: research_data
status: public
- id: '6263'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: Quantifying the determinants of evolutionary dynamics leading to drug resistance
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 13
year: '2015'
...
---
_id: '10817'
abstract:
- lang: eng
text: The Morse-Smale complex can be either explicitly or implicitly represented.
Depending on the type of representation, the simplification of the Morse-Smale
complex works differently. In the explicit representation, the Morse-Smale complex
is directly simplified by explicitly reconnecting the critical points during the
simplification. In the implicit representation, on the other hand, the Morse-Smale
complex is given by a combinatorial gradient field. In this setting, the simplification
changes the combinatorial flow, which yields an indirect simplification of the
Morse-Smale complex. The topological complexity of the Morse-Smale complex is
reduced in both representations. However, the simplifications generally yield
different results. In this chapter, we emphasize properties of the two representations
that cause these differences. We also provide a complexity analysis of the two
schemes with respect to running time and memory consumption.
acknowledgement: This research is supported and funded by the Digiteo unTopoVis project,
the TOPOSYS project FP7-ICT-318493-STREP, and MPC-VCC.
article_processing_charge: No
author:
- first_name: David
full_name: Günther, David
last_name: Günther
- first_name: Jan
full_name: Reininghaus, Jan
id: 4505473A-F248-11E8-B48F-1D18A9856A87
last_name: Reininghaus
- first_name: Hans-Peter
full_name: Seidel, Hans-Peter
last_name: Seidel
- first_name: Tino
full_name: Weinkauf, Tino
last_name: Weinkauf
citation:
ama: 'Günther D, Reininghaus J, Seidel H-P, Weinkauf T. Notes on the simplification
of the Morse-Smale complex. In: Bremer P-T, Hotz I, Pascucci V, Peikert R, eds.
Topological Methods in Data Analysis and Visualization III. Mathematics
and Visualization. Cham: Springer Nature; 2014:135-150. doi:10.1007/978-3-319-04099-8_9'
apa: 'Günther, D., Reininghaus, J., Seidel, H.-P., & Weinkauf, T. (2014). Notes
on the simplification of the Morse-Smale complex. In P.-T. Bremer, I. Hotz, V.
Pascucci, & R. Peikert (Eds.), Topological Methods in Data Analysis and
Visualization III. (pp. 135–150). Cham: Springer Nature. https://doi.org/10.1007/978-3-319-04099-8_9'
chicago: 'Günther, David, Jan Reininghaus, Hans-Peter Seidel, and Tino Weinkauf.
“Notes on the Simplification of the Morse-Smale Complex.” In Topological Methods
in Data Analysis and Visualization III., edited by Peer-Timo Bremer, Ingrid
Hotz, Valerio Pascucci, and Ronald Peikert, 135–50. Mathematics and Visualization.
Cham: Springer Nature, 2014. https://doi.org/10.1007/978-3-319-04099-8_9.'
ieee: 'D. Günther, J. Reininghaus, H.-P. Seidel, and T. Weinkauf, “Notes on the
simplification of the Morse-Smale complex,” in Topological Methods in Data
Analysis and Visualization III., P.-T. Bremer, I. Hotz, V. Pascucci, and R.
Peikert, Eds. Cham: Springer Nature, 2014, pp. 135–150.'
ista: 'Günther D, Reininghaus J, Seidel H-P, Weinkauf T. 2014.Notes on the simplification
of the Morse-Smale complex. In: Topological Methods in Data Analysis and Visualization
III. , 135–150.'
mla: Günther, David, et al. “Notes on the Simplification of the Morse-Smale Complex.”
Topological Methods in Data Analysis and Visualization III., edited by
Peer-Timo Bremer et al., Springer Nature, 2014, pp. 135–50, doi:10.1007/978-3-319-04099-8_9.
short: D. Günther, J. Reininghaus, H.-P. Seidel, T. Weinkauf, in:, P.-T. Bremer,
I. Hotz, V. Pascucci, R. Peikert (Eds.), Topological Methods in Data Analysis
and Visualization III., Springer Nature, Cham, 2014, pp. 135–150.
date_created: 2022-03-04T08:33:57Z
date_published: 2014-03-19T00:00:00Z
date_updated: 2025-04-15T08:37:54Z
day: '19'
department:
- _id: HeEd
doi: 10.1007/978-3-319-04099-8_9
ec_funded: 1
editor:
- first_name: Peer-Timo
full_name: Bremer, Peer-Timo
last_name: Bremer
- first_name: Ingrid
full_name: Hotz, Ingrid
last_name: Hotz
- first_name: Valerio
full_name: Pascucci, Valerio
last_name: Pascucci
- first_name: Ronald
full_name: Peikert, Ronald
last_name: Peikert
fulldoi: https://doi.org/10.1007/978-3-319-04099-8_9
language:
- iso: eng
month: '03'
oa_version: None
page: 135-150
place: Cham
project:
- _id: 255D761E-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '318493'
name: Topological Complex Systems
publication: Topological Methods in Data Analysis and Visualization III.
publication_identifier:
eisbn:
- '9783319040998'
eissn:
- 2197-666X
isbn:
- '9783319040981'
issn:
- 1612-3786
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
series_title: Mathematics and Visualization
status: public
title: Notes on the simplification of the Morse-Smale complex
type: book_chapter
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2014'
...
---
_id: '10884'
abstract:
- lang: eng
text: "We revisit the parameterized model checking problem for token-passing systems
and specifications in indexed CTL ∗ \\X. Emerson and Namjoshi (1995, 2003) have
shown that parameterized model checking of indexed CTL ∗ \\X in uni-directional
token rings can be reduced to checking rings up to some cutoff size. Clarke et
al. (2004) have shown a similar result for general topologies and indexed LTL
\\X, provided processes cannot choose the directions for sending or receiving
the token.\r\nWe unify and substantially extend these results by systematically
exploring fragments of indexed CTL ∗ \\X with respect to general topologies.
For each fragment we establish whether a cutoff exists, and for some concrete
topologies, such as rings, cliques and stars, we infer small cutoffs. Finally,
we show that the problem becomes undecidable, and thus no cutoffs exist, if processes
are allowed to choose the directions in which they send or from which they receive
the token."
acknowledgement: "This work was supported by the Austrian Science Fund through grant
P23499-N23\r\nand through the RiSE network (S11403, S11405, S11406, S11407-N23);
ERC Starting Grant (279307: Graph Games); Vienna Science and Technology Fund (WWTF)\r\ngrants
PROSEED, ICT12-059, and VRG11-005."
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Benjamin
full_name: Aminof, Benjamin
id: 4A55BD00-F248-11E8-B48F-1D18A9856A87
last_name: Aminof
- first_name: Swen
full_name: Jacobs, Swen
last_name: Jacobs
- first_name: Ayrat
full_name: Khalimov, Ayrat
last_name: Khalimov
- first_name: Sasha
full_name: Rubin, Sasha
id: 2EC51194-F248-11E8-B48F-1D18A9856A87
last_name: Rubin
citation:
ama: 'Aminof B, Jacobs S, Khalimov A, Rubin S. Parameterized model checking of token-passing
systems. In: Verification, Model Checking, and Abstract Interpretation.
Vol 8318. Springer Nature; 2014:262-281. doi:10.1007/978-3-642-54013-4_15'
apa: 'Aminof, B., Jacobs, S., Khalimov, A., & Rubin, S. (2014). Parameterized
model checking of token-passing systems. In Verification, Model Checking, and
Abstract Interpretation (Vol. 8318, pp. 262–281). San Diego, CA, United States:
Springer Nature. https://doi.org/10.1007/978-3-642-54013-4_15'
chicago: Aminof, Benjamin, Swen Jacobs, Ayrat Khalimov, and Sasha Rubin. “Parameterized
Model Checking of Token-Passing Systems.” In Verification, Model Checking,
and Abstract Interpretation, 8318:262–81. Springer Nature, 2014. https://doi.org/10.1007/978-3-642-54013-4_15.
ieee: B. Aminof, S. Jacobs, A. Khalimov, and S. Rubin, “Parameterized model checking
of token-passing systems,” in Verification, Model Checking, and Abstract Interpretation,
San Diego, CA, United States, 2014, vol. 8318, pp. 262–281.
ista: 'Aminof B, Jacobs S, Khalimov A, Rubin S. 2014. Parameterized model checking
of token-passing systems. Verification, Model Checking, and Abstract Interpretation.
VMCAI: Verifcation, Model Checking, and Abstract Interpretation, LNCS, vol. 8318,
262–281.'
mla: Aminof, Benjamin, et al. “Parameterized Model Checking of Token-Passing Systems.”
Verification, Model Checking, and Abstract Interpretation, vol. 8318, Springer
Nature, 2014, pp. 262–81, doi:10.1007/978-3-642-54013-4_15.
short: B. Aminof, S. Jacobs, A. Khalimov, S. Rubin, in:, Verification, Model Checking,
and Abstract Interpretation, Springer Nature, 2014, pp. 262–281.
conference:
end_date: 2014-01-21
location: San Diego, CA, United States
name: 'VMCAI: Verifcation, Model Checking, and Abstract Interpretation'
start_date: 2014-01-19
date_created: 2022-03-18T13:01:22Z
date_published: 2014-01-30T00:00:00Z
date_updated: 2025-04-15T06:29:59Z
day: '30'
department:
- _id: KrCh
doi: 10.1007/978-3-642-54013-4_15
ec_funded: 1
external_id:
arxiv:
- '1311.4425'
fulldoi: https://doi.org/10.1007/978-3-642-54013-4_15
intvolume: ' 8318'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: ' https://doi.org/10.48550/arXiv.1311.4425'
month: '01'
oa: 1
oa_version: Preprint
page: 262-281
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P 23499-N23
name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S11407
name: Game Theory
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '279307'
name: 'Quantitative Graph Games: Theory and Applications'
publication: Verification, Model Checking, and Abstract Interpretation
publication_identifier:
eisbn:
- '9783642540134'
eissn:
- 1611-3349
isbn:
- '9783642540127'
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Parameterized model checking of token-passing systems
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8318
year: '2014'
...
---
OA_place: repository
OA_type: green
_id: '10885'
abstract:
- lang: eng
text: "Two-player games on graphs provide the theoretical framework for many important
problems such as reactive synthesis. While the traditional study of two-player
zero-sum games has been extended to multi-player games with several notions of
equilibria, they are decidable only for perfect-information games, whereas several
applications require imperfect-information games.\r\nIn this paper we propose
a new notion of equilibria, called doomsday equilibria, which is a strategy profile
such that all players satisfy their own objective, and if any coalition of players
deviates and violates even one of the players objective, then the objective of
every player is violated.\r\nWe present algorithms and complexity results for
deciding the existence of doomsday equilibria for various classes of ω-regular
objectives, both for imperfect-information games, and for perfect-information
games.We provide optimal complexity bounds for imperfect-information games, and
in most cases for perfect-information games."
acknowledgement: " Supported by Austrian Science Fund (FWF) Grant No P23499-N23, FWF
NFN Grant No\r\nS11407-N23 (RiSE), ERC Start grant (279307: Graph Games), and Microsoft
faculty fellows award."
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Laurent
full_name: Doyen, Laurent
last_name: Doyen
- first_name: Emmanuel
full_name: Filiot, Emmanuel
last_name: Filiot
- first_name: Jean-François
full_name: Raskin, Jean-François
last_name: Raskin
citation:
ama: 'Chatterjee K, Doyen L, Filiot E, Raskin J-F. Doomsday equilibria for omega-regular
games. In: VMCAI 2014: Verification, Model Checking, and Abstract Interpretation.
Vol 8318. Springer Nature; 2014:78-97. doi:10.1007/978-3-642-54013-4_5'
apa: 'Chatterjee, K., Doyen, L., Filiot, E., & Raskin, J.-F. (2014). Doomsday
equilibria for omega-regular games. In VMCAI 2014: Verification, Model Checking,
and Abstract Interpretation (Vol. 8318, pp. 78–97). San Diego, CA, United
States: Springer Nature. https://doi.org/10.1007/978-3-642-54013-4_5'
chicago: 'Chatterjee, Krishnendu, Laurent Doyen, Emmanuel Filiot, and Jean-François
Raskin. “Doomsday Equilibria for Omega-Regular Games.” In VMCAI 2014: Verification,
Model Checking, and Abstract Interpretation, 8318:78–97. Springer Nature,
2014. https://doi.org/10.1007/978-3-642-54013-4_5.'
ieee: 'K. Chatterjee, L. Doyen, E. Filiot, and J.-F. Raskin, “Doomsday equilibria
for omega-regular games,” in VMCAI 2014: Verification, Model Checking, and
Abstract Interpretation, San Diego, CA, United States, 2014, vol. 8318, pp.
78–97.'
ista: 'Chatterjee K, Doyen L, Filiot E, Raskin J-F. 2014. Doomsday equilibria for
omega-regular games. VMCAI 2014: Verification, Model Checking, and Abstract Interpretation.
VMCAI: Verifcation, Model Checking, and Abstract Interpretation, LNCS, vol. 8318,
78–97.'
mla: 'Chatterjee, Krishnendu, et al. “Doomsday Equilibria for Omega-Regular Games.”
VMCAI 2014: Verification, Model Checking, and Abstract Interpretation,
vol. 8318, Springer Nature, 2014, pp. 78–97, doi:10.1007/978-3-642-54013-4_5.'
short: 'K. Chatterjee, L. Doyen, E. Filiot, J.-F. Raskin, in:, VMCAI 2014: Verification,
Model Checking, and Abstract Interpretation, Springer Nature, 2014, pp. 78–97.'
conference:
end_date: 2014-01-21
location: San Diego, CA, United States
name: 'VMCAI: Verifcation, Model Checking, and Abstract Interpretation'
start_date: 2014-01-19
date_created: 2022-03-18T13:03:15Z
date_published: 2014-01-30T00:00:00Z
date_updated: 2026-04-16T10:00:03Z
day: '30'
department:
- _id: KrCh
doi: 10.1007/978-3-642-54013-4_5
ec_funded: 1
external_id:
arxiv:
- '1311.3238'
fulldoi: https://doi.org/10.1007/978-3-642-54013-4_5
intvolume: ' 8318'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.1311.3238
month: '01'
oa: 1
oa_version: Preprint
page: 78-97
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P 23499-N23
name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S11407
name: Game Theory
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '279307'
name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2587B514-B435-11E9-9278-68D0E5697425
name: Microsoft Research Faculty Fellowship
publication: 'VMCAI 2014: Verification, Model Checking, and Abstract Interpretation'
publication_identifier:
eisbn:
- '9783642540134'
eissn:
- 1611-3349
isbn:
- '9783642540127'
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
record:
- id: '681'
relation: later_version
status: public
scopus_import: '1'
status: public
title: Doomsday equilibria for omega-regular games
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8318
year: '2014'
...
---
_id: '10886'
abstract:
- lang: eng
text: We propose a method for visualizing two-dimensional symmetric positive definite
tensor fields using the Heat Kernel Signature (HKS). The HKS is derived from the
heat kernel and was originally introduced as an isometry invariant shape signature.
Each positive definite tensor field defines a Riemannian manifold by considering
the tensor field as a Riemannian metric. On this Riemmanian manifold we can apply
the definition of the HKS. The resulting scalar quantity is used for the visualization
of tensor fields. The HKS is closely related to the Gaussian curvature of the
Riemannian manifold and the time parameter of the heat kernel allows a multiscale
analysis in a natural way. In this way, the HKS represents field related scale
space properties, enabling a level of detail analysis of tensor fields. This makes
the HKS an interesting new scalar quantity for tensor fields, which differs significantly
from usual tensor invariants like the trace or the determinant. A method for visualization
and a numerical realization of the HKS for tensor fields is proposed in this chapter.
To validate the approach we apply it to some illustrating simple examples as isolated
critical points and to a medical diffusion tensor data set.
acknowledgement: This research is partially supported by the TOPOSYS project FP7-ICT-318493-STREP.
alternative_title:
- Mathematics and Visualization
article_processing_charge: No
author:
- first_name: Valentin
full_name: Zobel, Valentin
last_name: Zobel
- first_name: Jan
full_name: Reininghaus, Jan
id: 4505473A-F248-11E8-B48F-1D18A9856A87
last_name: Reininghaus
- first_name: Ingrid
full_name: Hotz, Ingrid
last_name: Hotz
citation:
ama: 'Zobel V, Reininghaus J, Hotz I. Visualization of two-dimensional symmetric
positive definite tensor fields using the heat kernel signature. In: Topological
Methods in Data Analysis and Visualization III . Springer; 2014:249-262. doi:10.1007/978-3-319-04099-8_16'
apa: Zobel, V., Reininghaus, J., & Hotz, I. (2014). Visualization of two-dimensional
symmetric positive definite tensor fields using the heat kernel signature. In
Topological Methods in Data Analysis and Visualization III (pp. 249–262).
Springer. https://doi.org/10.1007/978-3-319-04099-8_16
chicago: Zobel, Valentin, Jan Reininghaus, and Ingrid Hotz. “Visualization of Two-Dimensional
Symmetric Positive Definite Tensor Fields Using the Heat Kernel Signature.” In
Topological Methods in Data Analysis and Visualization III , 249–62. Springer,
2014. https://doi.org/10.1007/978-3-319-04099-8_16.
ieee: V. Zobel, J. Reininghaus, and I. Hotz, “Visualization of two-dimensional symmetric
positive definite tensor fields using the heat kernel signature,” in Topological
Methods in Data Analysis and Visualization III , 2014, pp. 249–262.
ista: Zobel V, Reininghaus J, Hotz I. 2014. Visualization of two-dimensional symmetric
positive definite tensor fields using the heat kernel signature. Topological Methods
in Data Analysis and Visualization III . , Mathematics and Visualization, , 249–262.
mla: Zobel, Valentin, et al. “Visualization of Two-Dimensional Symmetric Positive
Definite Tensor Fields Using the Heat Kernel Signature.” Topological Methods
in Data Analysis and Visualization III , Springer, 2014, pp. 249–62, doi:10.1007/978-3-319-04099-8_16.
short: V. Zobel, J. Reininghaus, I. Hotz, in:, Topological Methods in Data Analysis
and Visualization III , Springer, 2014, pp. 249–262.
date_created: 2022-03-18T13:05:39Z
date_published: 2014-03-19T00:00:00Z
date_updated: 2023-09-05T14:13:16Z
day: '19'
department:
- _id: HeEd
doi: 10.1007/978-3-319-04099-8_16
fulldoi: https://doi.org/10.1007/978-3-319-04099-8_16
language:
- iso: eng
month: '03'
oa_version: None
page: 249-262
publication: 'Topological Methods in Data Analysis and Visualization III '
publication_identifier:
eisbn:
- '9783319040998'
eissn:
- 2197-666X
isbn:
- '9783319040981'
issn:
- 1612-3786
publication_status: published
publisher: Springer
quality_controlled: '1'
scopus_import: '1'
status: public
title: Visualization of two-dimensional symmetric positive definite tensor fields
using the heat kernel signature
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2014'
...
---
_id: '10892'
abstract:
- lang: eng
text: "In this paper, we introduce planar matchings on directed pseudo-line arrangements,
which yield a planar set of pseudo-line segments such that only matching-partners
are adjacent. By translating the planar matching problem into a corresponding
stable roommates problem we show that such matchings always exist.\r\nUsing our
new framework, we establish, for the first time, a complete, rigorous definition
of weighted straight skeletons, which are based on a so-called wavefront propagation
process. We present a generalized and unified approach to treat structural changes
in the wavefront that focuses on the restoration of weak planarity by finding
planar matchings."
acknowledgement: 'T. Biedl was supported by NSERC and the Ross and Muriel Cheriton
Fellowship. P. Palfrader was supported by Austrian Science Fund (FWF): P25816-N15.'
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Therese
full_name: Biedl, Therese
last_name: Biedl
- first_name: Stefan
full_name: Huber, Stefan
id: 4700A070-F248-11E8-B48F-1D18A9856A87
last_name: Huber
orcid: 0000-0002-8871-5814
- first_name: Peter
full_name: Palfrader, Peter
last_name: Palfrader
citation:
ama: 'Biedl T, Huber S, Palfrader P. Planar matchings for weighted straight skeletons.
In: 25th International Symposium, ISAAC 2014. Vol 8889. Springer Nature;
2014:117-127. doi:10.1007/978-3-319-13075-0_10'
apa: 'Biedl, T., Huber, S., & Palfrader, P. (2014). Planar matchings for weighted
straight skeletons. In 25th International Symposium, ISAAC 2014 (Vol. 8889,
pp. 117–127). Jeonju, Korea: Springer Nature. https://doi.org/10.1007/978-3-319-13075-0_10'
chicago: Biedl, Therese, Stefan Huber, and Peter Palfrader. “Planar Matchings for
Weighted Straight Skeletons.” In 25th International Symposium, ISAAC 2014,
8889:117–27. Springer Nature, 2014. https://doi.org/10.1007/978-3-319-13075-0_10.
ieee: T. Biedl, S. Huber, and P. Palfrader, “Planar matchings for weighted straight
skeletons,” in 25th International Symposium, ISAAC 2014, Jeonju, Korea,
2014, vol. 8889, pp. 117–127.
ista: 'Biedl T, Huber S, Palfrader P. 2014. Planar matchings for weighted straight
skeletons. 25th International Symposium, ISAAC 2014. ISAAC: International Symposium
on Algorithms and Computation, LNCS, vol. 8889, 117–127.'
mla: Biedl, Therese, et al. “Planar Matchings for Weighted Straight Skeletons.”
25th International Symposium, ISAAC 2014, vol. 8889, Springer Nature, 2014,
pp. 117–27, doi:10.1007/978-3-319-13075-0_10.
short: T. Biedl, S. Huber, P. Palfrader, in:, 25th International Symposium, ISAAC
2014, Springer Nature, 2014, pp. 117–127.
conference:
end_date: 2014-12-17
location: Jeonju, Korea
name: 'ISAAC: International Symposium on Algorithms and Computation'
start_date: 2014-12-15
corr_author: '1'
date_created: 2022-03-21T07:09:03Z
date_published: 2014-11-08T00:00:00Z
date_updated: 2025-09-29T13:22:55Z
day: '08'
department:
- _id: HeEd
doi: 10.1007/978-3-319-13075-0_10
external_id:
isi:
- '000354865900010'
fulldoi: https://doi.org/10.1007/978-3-319-13075-0_10
intvolume: ' 8889'
isi: 1
language:
- iso: eng
month: '11'
oa_version: None
page: 117-127
publication: 25th International Symposium, ISAAC 2014
publication_identifier:
eisbn:
- '9783319130750'
eissn:
- 1611-3349
isbn:
- '9783319130743'
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
record:
- id: '481'
relation: later_version
status: public
scopus_import: '1'
status: public
title: Planar matchings for weighted straight skeletons
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 8889
year: '2014'
...