---
_id: '9655'
abstract:
- lang: eng
  text: Correlative microscopy incorporates the specificity of fluorescent protein
    labeling into high-resolution electron micrographs. Several approaches exist for
    correlative microscopy, most of which have used the green fluorescent protein
    (GFP) as the label for light microscopy. Here we use chemical tagging and synthetic
    fluorophores instead, in order to achieve protein-specific labeling, and to perform
    multicolor imaging. We show that synthetic fluorophores preserve their post-embedding
    fluorescence in the presence of uranyl acetate. Post-embedding fluorescence is
    of such quality that the specimen can be prepared with identical protocols for
    scanning electron microscopy (SEM) and transmission electron microscopy (TEM);
    this is particularly valuable when singular or otherwise difficult samples are
    examined. We show that synthetic fluorophores give bright, well-resolved signals
    in super-resolution light microscopy, enabling us to superimpose light microscopic
    images with a precision of up to 25 nm in the x–y plane on electron micrographs.
    To exemplify the preservation quality of our new method we visualize the molecular
    arrangement of cadherins in adherens junctions of mouse epithelial cells.
article_processing_charge: No
article_type: original
author:
- first_name: Mario
  full_name: Perkovic, Mario
  last_name: Perkovic
- first_name: Michael
  full_name: Kunz, Michael
  last_name: Kunz
- first_name: Ulrike
  full_name: Endesfelder, Ulrike
  last_name: Endesfelder
- first_name: Stefanie
  full_name: Bunse, Stefanie
  last_name: Bunse
- first_name: Christoph
  full_name: Wigge, Christoph
  last_name: Wigge
- first_name: Zhou
  full_name: Yu, Zhou
  last_name: Yu
- first_name: Victor-Valentin
  full_name: Hodirnau, Victor-Valentin
  id: 3661B498-F248-11E8-B48F-1D18A9856A87
  last_name: Hodirnau
- first_name: Margot P.
  full_name: Scheffer, Margot P.
  last_name: Scheffer
- first_name: Anja
  full_name: Seybert, Anja
  last_name: Seybert
- first_name: Sebastian
  full_name: Malkusch, Sebastian
  last_name: Malkusch
- first_name: Erin M.
  full_name: Schuman, Erin M.
  last_name: Schuman
- first_name: Mike
  full_name: Heilemann, Mike
  last_name: Heilemann
- first_name: Achilleas S.
  full_name: Frangakis, Achilleas S.
  last_name: Frangakis
citation:
  ama: Perkovic M, Kunz M, Endesfelder U, et al. Correlative light- and electron microscopy
    with chemical tags. <i>Journal of Structural Biology</i>. 2014;186(2):205-213.
    doi:<a href="https://doi.org/10.1016/j.jsb.2014.03.018">10.1016/j.jsb.2014.03.018</a>
  apa: Perkovic, M., Kunz, M., Endesfelder, U., Bunse, S., Wigge, C., Yu, Z., … Frangakis,
    A. S. (2014). Correlative light- and electron microscopy with chemical tags. <i>Journal
    of Structural Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.jsb.2014.03.018">https://doi.org/10.1016/j.jsb.2014.03.018</a>
  chicago: Perkovic, Mario, Michael Kunz, Ulrike Endesfelder, Stefanie Bunse, Christoph
    Wigge, Zhou Yu, Victor-Valentin Hodirnau, et al. “Correlative Light- and Electron
    Microscopy with Chemical Tags.” <i>Journal of Structural Biology</i>. Elsevier,
    2014. <a href="https://doi.org/10.1016/j.jsb.2014.03.018">https://doi.org/10.1016/j.jsb.2014.03.018</a>.
  ieee: M. Perkovic <i>et al.</i>, “Correlative light- and electron microscopy with
    chemical tags,” <i>Journal of Structural Biology</i>, vol. 186, no. 2. Elsevier,
    pp. 205–213, 2014.
  ista: Perkovic M, Kunz M, Endesfelder U, Bunse S, Wigge C, Yu Z, Hodirnau V-V, Scheffer
    MP, Seybert A, Malkusch S, Schuman EM, Heilemann M, Frangakis AS. 2014. Correlative
    light- and electron microscopy with chemical tags. Journal of Structural Biology.
    186(2), 205–213.
  mla: Perkovic, Mario, et al. “Correlative Light- and Electron Microscopy with Chemical
    Tags.” <i>Journal of Structural Biology</i>, vol. 186, no. 2, Elsevier, 2014,
    pp. 205–13, doi:<a href="https://doi.org/10.1016/j.jsb.2014.03.018">10.1016/j.jsb.2014.03.018</a>.
  short: M. Perkovic, M. Kunz, U. Endesfelder, S. Bunse, C. Wigge, Z. Yu, V.-V. Hodirnau,
    M.P. Scheffer, A. Seybert, S. Malkusch, E.M. Schuman, M. Heilemann, A.S. Frangakis,
    Journal of Structural Biology 186 (2014) 205–213.
date_created: 2021-07-14T09:05:42Z
date_published: 2014-05-01T00:00:00Z
date_updated: 2021-07-22T08:26:32Z
day: '01'
ddc:
- '570'
doi: 10.1016/j.jsb.2014.03.018
extern: '1'
external_id:
  pmid:
  - '24698954'
file:
- access_level: open_access
  checksum: a322991b43cdc5935c99db88d285aa3a
  content_type: application/pdf
  creator: asandaue
  date_created: 2021-07-22T08:06:34Z
  date_updated: 2021-07-22T08:06:34Z
  file_id: '9701'
  file_name: 2014_JournalOfStructuralBiology_Perkovic.pdf
  file_size: 3454628
  relation: main_file
  success: 1
file_date_updated: 2021-07-22T08:06:34Z
fulldoi: https://doi.org/10.1016/j.jsb.2014.03.018
has_accepted_license: '1'
intvolume: '       186'
issue: '2'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/3.0/
month: '05'
oa: 1
oa_version: Published Version
page: 205-213
pmid: 1
publication: Journal of Structural Biology
publication_identifier:
  issn:
  - 1047-8477
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Correlative light- and electron microscopy with chemical tags
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/3.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported (CC BY-NC-ND
    3.0)
  short: CC BY-NC-ND (3.0)
type: journal_article
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
volume: 186
year: '2014'
...
---
_id: '9662'
abstract:
- lang: eng
  text: Fractionation of isotopes among distinct molecules or phases is a quantum
    effect which is often exploited to obtain insights on reaction mechanisms, biochemical,
    geochemical, and atmospheric phenomena. Accurate evaluation of isotope ratios
    in atomistic simulations is challenging, because one needs to perform a thermodynamic
    integration with respect to the isotope mass, along with time-consuming path integral
    calculations. By re-formulating the problem as a particle exchange in the ring
    polymer partition function, we derive new estimators giving direct access to the
    differential partitioning of isotopes, which can simplify the calculations by
    avoiding thermodynamic integration. We demonstrate the efficiency of these estimators
    by applying them to investigate the isotope fractionation ratios in the gas-phase
    Zundel cation, and in a few simple hydrocarbons.
article_number: '244112'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Bingqing
  full_name: Cheng, Bingqing
  id: cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9
  last_name: Cheng
  orcid: 0000-0002-3584-9632
- first_name: Michele
  full_name: Ceriotti, Michele
  last_name: Ceriotti
citation:
  ama: Cheng B, Ceriotti M. Direct path integral estimators for isotope fractionation
    ratios. <i>The Journal of Chemical Physics</i>. 2014;141(24). doi:<a href="https://doi.org/10.1063/1.4904293">10.1063/1.4904293</a>
  apa: Cheng, B., &#38; Ceriotti, M. (2014). Direct path integral estimators for isotope
    fractionation ratios. <i>The Journal of Chemical Physics</i>. AIP Publishing.
    <a href="https://doi.org/10.1063/1.4904293">https://doi.org/10.1063/1.4904293</a>
  chicago: Cheng, Bingqing, and Michele Ceriotti. “Direct Path Integral Estimators
    for Isotope Fractionation Ratios.” <i>The Journal of Chemical Physics</i>. AIP
    Publishing, 2014. <a href="https://doi.org/10.1063/1.4904293">https://doi.org/10.1063/1.4904293</a>.
  ieee: B. Cheng and M. Ceriotti, “Direct path integral estimators for isotope fractionation
    ratios,” <i>The Journal of Chemical Physics</i>, vol. 141, no. 24. AIP Publishing,
    2014.
  ista: Cheng B, Ceriotti M. 2014. Direct path integral estimators for isotope fractionation
    ratios. The Journal of Chemical Physics. 141(24), 244112.
  mla: Cheng, Bingqing, and Michele Ceriotti. “Direct Path Integral Estimators for
    Isotope Fractionation Ratios.” <i>The Journal of Chemical Physics</i>, vol. 141,
    no. 24, 244112, AIP Publishing, 2014, doi:<a href="https://doi.org/10.1063/1.4904293">10.1063/1.4904293</a>.
  short: B. Cheng, M. Ceriotti, The Journal of Chemical Physics 141 (2014).
date_created: 2021-07-15T09:22:49Z
date_published: 2014-12-28T00:00:00Z
date_updated: 2021-08-09T12:32:24Z
day: '28'
doi: 10.1063/1.4904293
extern: '1'
external_id:
  arxiv:
  - '1412.1308'
  pmid:
  - '25554138'
fulldoi: https://doi.org/10.1063/1.4904293
intvolume: '       141'
issue: '24'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1412.1308
month: '12'
oa: 1
oa_version: Preprint
pmid: 1
publication: The Journal of Chemical Physics
publication_identifier:
  eissn:
  - 1089-7690
  issn:
  - 0021-9606
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Direct path integral estimators for isotope fractionation ratios
type: journal_article
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
volume: 141
year: '2014'
...
---
_id: '9686'
abstract:
- lang: eng
  text: It is well known that ultrasonic vibration can soften metals, and this phenomenon
    has been widely exploited in industrial applications concerning metal forming
    and bonding. Recent experiments show that the simultaneous application of oscillatory
    stresses from audible to ultrasonic frequency ranges can lead to not only softening
    but also significant dislocation annihilation and subgrain formation in metal
    samples from the nano- to macro-size range. These findings indicate that the existing
    understanding of ultrasound softening – that the vibrations either impose additional
    stress waves to augment the quasi-static applied load, or cause heating of the
    metal, whereas the metal’s intrinsic deformation resistance or mechanism remains
    unaltered – is far from complete. To understand the softening and the associated
    enhanced subgrain formation and dislocation annihilation, a new simulator based
    on the dynamics of dislocation-density functions is employed. This new simulator
    considers the flux, production and annihilation, as well as the Taylor and elastic
    interactions between dislocation densities. Softening during vibrations as well
    as enhanced cell formation is predicted. The simulations reveal the main mechanism
    for subcell formation under oscillatory loadings to be the enhanced elimination
    of statistically stored dislocations (SSDs) by the oscillatory stress, leaving
    behind geometrically necessary dislocations with low Schmid factors which then
    form the subgrain walls. The oscillatory stress helps the depletion of the SSDs,
    because the chance for them to meet up and annihilate is increased with reversals
    of dislocation motions. This is the first simulation effort to successfully predict
    the cell formation phenomenon under vibratory loadings.
article_processing_charge: No
article_type: original
author:
- first_name: Bingqing
  full_name: Cheng, Bingqing
  id: cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9
  last_name: Cheng
  orcid: 0000-0002-3584-9632
- first_name: H.S.
  full_name: Leung, H.S.
  last_name: Leung
- first_name: A.H.W.
  full_name: Ngan, A.H.W.
  last_name: Ngan
citation:
  ama: Cheng B, Leung HS, Ngan AHW. Strength of metals under vibrations – dislocation-density-function
    dynamics simulations. <i>Philosophical Magazine</i>. 2014;95(16-18):1845-1865.
    doi:<a href="https://doi.org/10.1080/14786435.2014.897008">10.1080/14786435.2014.897008</a>
  apa: Cheng, B., Leung, H. S., &#38; Ngan, A. H. W. (2014). Strength of metals under
    vibrations – dislocation-density-function dynamics simulations. <i>Philosophical
    Magazine</i>. Taylor &#38; Francis. <a href="https://doi.org/10.1080/14786435.2014.897008">https://doi.org/10.1080/14786435.2014.897008</a>
  chicago: Cheng, Bingqing, H.S. Leung, and A.H.W. Ngan. “Strength of Metals under
    Vibrations – Dislocation-Density-Function Dynamics Simulations.” <i>Philosophical
    Magazine</i>. Taylor &#38; Francis, 2014. <a href="https://doi.org/10.1080/14786435.2014.897008">https://doi.org/10.1080/14786435.2014.897008</a>.
  ieee: B. Cheng, H. S. Leung, and A. H. W. Ngan, “Strength of metals under vibrations
    – dislocation-density-function dynamics simulations,” <i>Philosophical Magazine</i>,
    vol. 95, no. 16–18. Taylor &#38; Francis, pp. 1845–1865, 2014.
  ista: Cheng B, Leung HS, Ngan AHW. 2014. Strength of metals under vibrations – dislocation-density-function
    dynamics simulations. Philosophical Magazine. 95(16–18), 1845–1865.
  mla: Cheng, Bingqing, et al. “Strength of Metals under Vibrations – Dislocation-Density-Function
    Dynamics Simulations.” <i>Philosophical Magazine</i>, vol. 95, no. 16–18, Taylor
    &#38; Francis, 2014, pp. 1845–65, doi:<a href="https://doi.org/10.1080/14786435.2014.897008">10.1080/14786435.2014.897008</a>.
  short: B. Cheng, H.S. Leung, A.H.W. Ngan, Philosophical Magazine 95 (2014) 1845–1865.
date_created: 2021-07-19T09:27:15Z
date_published: 2014-06-23T00:00:00Z
date_updated: 2023-02-23T14:04:59Z
day: '23'
doi: 10.1080/14786435.2014.897008
extern: '1'
fulldoi: https://doi.org/10.1080/14786435.2014.897008
intvolume: '        95'
issue: 16-18
language:
- iso: eng
month: '06'
oa_version: None
page: 1845-1865
publication: Philosophical Magazine
publication_identifier:
  eissn:
  - 1478-6443
  issn:
  - 1478-6435
publication_status: published
publisher: Taylor & Francis
quality_controlled: '1'
scopus_import: '1'
status: public
title: Strength of metals under vibrations – dislocation-density-function dynamics
  simulations
type: journal_article
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
volume: 95
year: '2014'
...
---
_id: '97'
abstract:
- lang: eng
  text: The distribution of Coulomb blockade peak heights as a function of magnetic
    field is investigated experimentally in a Ge-Si nanowire quantum dot. Strong spin-orbit
    coupling in this hole-gas system leads to antilocalization of Coulomb blockade
    peaks, consistent with theory. In particular, the peak height distribution has
    its maximum away from zero at zero magnetic field, with an average that decreases
    with increasing field. Magnetoconductance in the open-wire regime places a bound
    on the spin-orbit length (lso < 20 nm), consistent with values extracted in the
    Coulomb blockade regime (lso < 25 nm).
acknowledgement: Research supported by the Danish National Research Foundation, the
  Office of Science at the U.S. Department of Energy, the National Science Foundation
  (PHY-1104528), and the Defense Advanced Research Projects Agency through the QuEST
  Program.
article_number: '216806'
arxiv: 1
author:
- first_name: Andrew P
  full_name: Higginbotham, Andrew P
  id: 4AD6785A-F248-11E8-B48F-1D18A9856A87
  last_name: Higginbotham
  orcid: 0000-0003-2607-2363
- first_name: Ferdinand
  full_name: Kuemmeth, Ferdinand
  last_name: Kuemmeth
- first_name: Thorvald
  full_name: Larsen, Thorvald
  last_name: Larsen
- first_name: Mattias
  full_name: Fitzpatrick, Mattias
  last_name: Fitzpatrick
- first_name: Jun
  full_name: Yao, Jun
  last_name: Yao
- first_name: Hao
  full_name: Yan, Hao
  last_name: Yan
- first_name: Charles
  full_name: Lieber, Charles
  last_name: Lieber
- first_name: Charles
  full_name: Marcus, Charles
  last_name: Marcus
citation:
  ama: Higginbotham AP, Kuemmeth F, Larsen T, et al. Antilocalization of coulomb blockade
    in a Ge/Si nanowire. <i>APS Physics, Physical Review Letters</i>. 2014;112(21).
    doi:<a href="https://doi.org/10.1103/PhysRevLett.112.216806">10.1103/PhysRevLett.112.216806</a>
  apa: Higginbotham, A. P., Kuemmeth, F., Larsen, T., Fitzpatrick, M., Yao, J., Yan,
    H., … Marcus, C. (2014). Antilocalization of coulomb blockade in a Ge/Si nanowire.
    <i>APS Physics, Physical Review Letters</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevLett.112.216806">https://doi.org/10.1103/PhysRevLett.112.216806</a>
  chicago: Higginbotham, Andrew P, Ferdinand Kuemmeth, Thorvald Larsen, Mattias Fitzpatrick,
    Jun Yao, Hao Yan, Charles Lieber, and Charles Marcus. “Antilocalization of Coulomb
    Blockade in a Ge/Si Nanowire.” <i>APS Physics, Physical Review Letters</i>. American
    Physical Society, 2014. <a href="https://doi.org/10.1103/PhysRevLett.112.216806">https://doi.org/10.1103/PhysRevLett.112.216806</a>.
  ieee: A. P. Higginbotham <i>et al.</i>, “Antilocalization of coulomb blockade in
    a Ge/Si nanowire,” <i>APS Physics, Physical Review Letters</i>, vol. 112, no.
    21. American Physical Society, 2014.
  ista: Higginbotham AP, Kuemmeth F, Larsen T, Fitzpatrick M, Yao J, Yan H, Lieber
    C, Marcus C. 2014. Antilocalization of coulomb blockade in a Ge/Si nanowire. APS
    Physics, Physical Review Letters. 112(21), 216806.
  mla: Higginbotham, Andrew P., et al. “Antilocalization of Coulomb Blockade in a
    Ge/Si Nanowire.” <i>APS Physics, Physical Review Letters</i>, vol. 112, no. 21,
    216806, American Physical Society, 2014, doi:<a href="https://doi.org/10.1103/PhysRevLett.112.216806">10.1103/PhysRevLett.112.216806</a>.
  short: A.P. Higginbotham, F. Kuemmeth, T. Larsen, M. Fitzpatrick, J. Yao, H. Yan,
    C. Lieber, C. Marcus, APS Physics, Physical Review Letters 112 (2014).
date_created: 2018-12-11T11:44:36Z
date_published: 2014-05-29T00:00:00Z
date_updated: 2021-01-12T08:22:19Z
day: '29'
doi: 10.1103/PhysRevLett.112.216806
extern: '1'
external_id:
  arxiv:
  - '1401.2948'
fulldoi: https://doi.org/10.1103/PhysRevLett.112.216806
intvolume: '       112'
issue: '21'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1401.2948
month: '05'
oa: 1
oa_version: None
publication: APS Physics, Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '7957'
quality_controlled: '1'
status: public
title: Antilocalization of coulomb blockade in a Ge/Si nanowire
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 112
year: '2014'
...
---
_id: '9722'
article_processing_charge: No
author:
- first_name: Anna
  full_name: Lovrics, Anna
  last_name: Lovrics
- first_name: Yu
  full_name: Gao, Yu
  last_name: Gao
- first_name: Bianka
  full_name: Juhász, Bianka
  last_name: Juhász
- first_name: István
  full_name: Bock, István
  last_name: Bock
- first_name: Helen M.
  full_name: Byrne, Helen M.
  last_name: Byrne
- first_name: András
  full_name: Dinnyés, András
  last_name: Dinnyés
- first_name: Krisztián
  full_name: Kovács, Krisztián
  id: 2AB5821E-F248-11E8-B48F-1D18A9856A87
  last_name: Kovács
citation:
  ama: Lovrics A, Gao Y, Juhász B, et al. Transition probability between TF expression
    states when Dbx2 inhibits Nkx2.2. 2014. doi:<a href="https://doi.org/10.1371/journal.pone.0111430.s006">10.1371/journal.pone.0111430.s006</a>
  apa: Lovrics, A., Gao, Y., Juhász, B., Bock, I., Byrne, H. M., Dinnyés, A., &#38;
    Kovács, K. (2014). Transition probability between TF expression states when Dbx2
    inhibits Nkx2.2. Public Library of Science. <a href="https://doi.org/10.1371/journal.pone.0111430.s006">https://doi.org/10.1371/journal.pone.0111430.s006</a>
  chicago: Lovrics, Anna, Yu Gao, Bianka Juhász, István Bock, Helen M. Byrne, András
    Dinnyés, and Krisztián Kovács. “Transition Probability between TF Expression States
    When Dbx2 Inhibits Nkx2.2.” Public Library of Science, 2014. <a href="https://doi.org/10.1371/journal.pone.0111430.s006">https://doi.org/10.1371/journal.pone.0111430.s006</a>.
  ieee: A. Lovrics <i>et al.</i>, “Transition probability between TF expression states
    when Dbx2 inhibits Nkx2.2.” Public Library of Science, 2014.
  ista: Lovrics A, Gao Y, Juhász B, Bock I, Byrne HM, Dinnyés A, Kovács K. 2014. Transition
    probability between TF expression states when Dbx2 inhibits Nkx2.2, Public Library
    of Science, <a href="https://doi.org/10.1371/journal.pone.0111430.s006">10.1371/journal.pone.0111430.s006</a>.
  mla: Lovrics, Anna, et al. <i>Transition Probability between TF Expression States
    When Dbx2 Inhibits Nkx2.2</i>. Public Library of Science, 2014, doi:<a href="https://doi.org/10.1371/journal.pone.0111430.s006">10.1371/journal.pone.0111430.s006</a>.
  short: A. Lovrics, Y. Gao, B. Juhász, I. Bock, H.M. Byrne, A. Dinnyés, K. Kovács,
    (2014).
date_created: 2021-07-26T14:35:00Z
date_published: 2014-11-14T00:00:00Z
date_updated: 2025-09-29T12:02:47Z
day: '14'
department:
- _id: JoCs
doi: 10.1371/journal.pone.0111430.s006
fulldoi: https://doi.org/10.1371/journal.pone.0111430.s006
month: '11'
oa_version: Published Version
publisher: Public Library of Science
related_material:
  record:
  - id: '2004'
    relation: used_in_publication
    status: public
status: public
title: Transition probability between TF expression states when Dbx2 inhibits Nkx2.2
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2014'
...
---
_id: '9739'
article_processing_charge: No
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Andreas
  full_name: Pavlogiannis, Andreas
  id: 49704004-F248-11E8-B48F-1D18A9856A87
  last_name: Pavlogiannis
  orcid: 0000-0002-8943-0722
- first_name: Ben
  full_name: Adlam, Ben
  last_name: Adlam
- first_name: Martin
  full_name: Novak, Martin
  last_name: Novak
citation:
  ama: Chatterjee K, Pavlogiannis A, Adlam B, Novak M. Detailed proofs for “The time
    scale of evolutionary innovation.” 2014. doi:<a href="https://doi.org/10.1371/journal.pcbi.1003818.s001">10.1371/journal.pcbi.1003818.s001</a>
  apa: Chatterjee, K., Pavlogiannis, A., Adlam, B., &#38; Novak, M. (2014). Detailed
    proofs for “The time scale of evolutionary innovation.” Public Library of Science.
    <a href="https://doi.org/10.1371/journal.pcbi.1003818.s001">https://doi.org/10.1371/journal.pcbi.1003818.s001</a>
  chicago: Chatterjee, Krishnendu, Andreas Pavlogiannis, Ben Adlam, and Martin Novak.
    “Detailed Proofs for ‘The Time Scale of Evolutionary Innovation.’” Public Library
    of Science, 2014. <a href="https://doi.org/10.1371/journal.pcbi.1003818.s001">https://doi.org/10.1371/journal.pcbi.1003818.s001</a>.
  ieee: K. Chatterjee, A. Pavlogiannis, B. Adlam, and M. Novak, “Detailed proofs for
    ‘The time scale of evolutionary innovation.’” Public Library of Science, 2014.
  ista: Chatterjee K, Pavlogiannis A, Adlam B, Novak M. 2014. Detailed proofs for
    “The time scale of evolutionary innovation”, Public Library of Science, <a href="https://doi.org/10.1371/journal.pcbi.1003818.s001">10.1371/journal.pcbi.1003818.s001</a>.
  mla: Chatterjee, Krishnendu, et al. <i>Detailed Proofs for “The Time Scale of Evolutionary
    Innovation.”</i> Public Library of Science, 2014, doi:<a href="https://doi.org/10.1371/journal.pcbi.1003818.s001">10.1371/journal.pcbi.1003818.s001</a>.
  short: K. Chatterjee, A. Pavlogiannis, B. Adlam, M. Novak, (2014).
date_created: 2021-07-28T08:13:57Z
date_published: 2014-09-11T00:00:00Z
date_updated: 2025-09-29T11:53:46Z
day: '11'
department:
- _id: KrCh
doi: 10.1371/journal.pcbi.1003818.s001
fulldoi: https://doi.org/10.1371/journal.pcbi.1003818.s001
month: '09'
oa_version: Published Version
publisher: Public Library of Science
related_material:
  record:
  - id: '2039'
    relation: used_in_publication
    status: public
status: public
title: Detailed proofs for “The time scale of evolutionary innovation”
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2014'
...
---
_id: '9740'
abstract:
- lang: eng
  text: The fitness effects of symbionts on their hosts can be context-dependent,
    with usually benign symbionts causing detrimental effects when their hosts are
    stressed, or typically parasitic symbionts providing protection towards their
    hosts (e.g. against pathogen infection). Here, we studied the novel association
    between the invasive garden ant Lasius neglectus and its fungal ectosymbiont Laboulbenia
    formicarum for potential costs and benefits. We tested ants with different Laboulbenia
    levels for their survival and immunity under resource limitation and exposure
    to the obligate killing entomopathogen Metarhizium brunneum. While survival of
    L. neglectus workers under starvation was significantly decreased with increasing
    Laboulbenia levels, host survival under Metarhizium exposure increased with higher
    levels of the ectosymbiont, suggesting a symbiont-mediated anti-pathogen protection,
    which seems to be driven mechanistically by both improved sanitary behaviours
    and an upregulated immune system. Ants with high Laboulbenia levels showed significantly
    longer self-grooming and elevated expression of immune genes relevant for wound
    repair and antifungal responses (β-1,3-glucan binding protein, Prophenoloxidase),
    compared with ants carrying low Laboulbenia levels. This suggests that the ectosymbiont
    Laboulbenia formicarum weakens its ant host by either direct resource exploitation
    or the costs of an upregulated behavioural and immunological response, which,
    however, provides a prophylactic protection upon later exposure to pathogens.
article_processing_charge: No
author:
- first_name: Matthias
  full_name: Konrad, Matthias
  id: 46528076-F248-11E8-B48F-1D18A9856A87
  last_name: Konrad
- first_name: Anna V
  full_name: Grasse, Anna V
  id: 406F989C-F248-11E8-B48F-1D18A9856A87
  last_name: Grasse
- first_name: Simon
  full_name: Tragust, Simon
  id: 35A7A418-F248-11E8-B48F-1D18A9856A87
  last_name: Tragust
- first_name: Sylvia
  full_name: Cremer, Sylvia
  id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
  last_name: Cremer
  orcid: 0000-0002-2193-3868
citation:
  ama: 'Konrad M, Grasse AV, Tragust S, Cremer S. Data from: Anti-pathogen protection
    versus survival costs mediated by an ectosymbiont in an ant host. 2014. doi:<a
    href="https://doi.org/10.5061/dryad.vm0vc">10.5061/dryad.vm0vc</a>'
  apa: 'Konrad, M., Grasse, A. V., Tragust, S., &#38; Cremer, S. (2014). Data from:
    Anti-pathogen protection versus survival costs mediated by an ectosymbiont in
    an ant host. Dryad. <a href="https://doi.org/10.5061/dryad.vm0vc">https://doi.org/10.5061/dryad.vm0vc</a>'
  chicago: 'Konrad, Matthias, Anna V Grasse, Simon Tragust, and Sylvia Cremer. “Data
    from: Anti-Pathogen Protection versus Survival Costs Mediated by an Ectosymbiont
    in an Ant Host.” Dryad, 2014. <a href="https://doi.org/10.5061/dryad.vm0vc">https://doi.org/10.5061/dryad.vm0vc</a>.'
  ieee: 'M. Konrad, A. V. Grasse, S. Tragust, and S. Cremer, “Data from: Anti-pathogen
    protection versus survival costs mediated by an ectosymbiont in an ant host.”
    Dryad, 2014.'
  ista: 'Konrad M, Grasse AV, Tragust S, Cremer S. 2014. Data from: Anti-pathogen
    protection versus survival costs mediated by an ectosymbiont in an ant host, Dryad,
    <a href="https://doi.org/10.5061/dryad.vm0vc">10.5061/dryad.vm0vc</a>.'
  mla: 'Konrad, Matthias, et al. <i>Data from: Anti-Pathogen Protection versus Survival
    Costs Mediated by an Ectosymbiont in an Ant Host</i>. Dryad, 2014, doi:<a href="https://doi.org/10.5061/dryad.vm0vc">10.5061/dryad.vm0vc</a>.'
  short: M. Konrad, A.V. Grasse, S. Tragust, S. Cremer, (2014).
corr_author: '1'
date_created: 2021-07-28T08:38:40Z
date_published: 2014-11-13T00:00:00Z
date_updated: 2025-09-23T07:55:02Z
day: '13'
department:
- _id: SyCr
doi: 10.5061/dryad.vm0vc
fulldoi: https://doi.org/10.5061/dryad.vm0vc
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5061/dryad.vm0vc
month: '11'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
  record:
  - id: '1993'
    relation: used_in_publication
    status: public
status: public
title: 'Data from: Anti-pathogen protection versus survival costs mediated by an ectosymbiont
  in an ant host'
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2014'
...
---
_id: '9747'
abstract:
- lang: eng
  text: Understanding the effects of sex and migration on adaptation to novel environments
    remains a key problem in evolutionary biology. Using a single-cell alga Chlamydomonas
    reinhardtii, we investigated how sex and migration affected rates of evolutionary
    rescue in a sink environment, and subsequent changes in fitness following evolutionary
    rescue. We show that sex and migration affect both the rate of evolutionary rescue
    and subsequent adaptation. However, their combined effects change as the populations
    adapt to a sink habitat. Both sex and migration independently increased rates
    of evolutionary rescue, but the effect of sex on subsequent fitness improvements,
    following initial rescue, changed with migration, as sex was beneficial in the
    absence of migration but constraining adaptation when combined with migration.
    These results suggest that sex and migration are beneficial during the initial
    stages of adaptation, but can become detrimental as the population adapts to its
    environment.
article_processing_charge: No
author:
- first_name: Mato
  full_name: Lagator, Mato
  id: 345D25EC-F248-11E8-B48F-1D18A9856A87
  last_name: Lagator
- first_name: Andrew
  full_name: Morgan, Andrew
  last_name: Morgan
- first_name: Paul
  full_name: Neve, Paul
  last_name: Neve
- first_name: Nick
  full_name: Colegrave, Nick
  last_name: Colegrave
citation:
  ama: 'Lagator M, Morgan A, Neve P, Colegrave N. Data from: Role of sex and migration
    in adaptation to sink environments. 2014. doi:<a href="https://doi.org/10.5061/dryad.s42n1">10.5061/dryad.s42n1</a>'
  apa: 'Lagator, M., Morgan, A., Neve, P., &#38; Colegrave, N. (2014). Data from:
    Role of sex and migration in adaptation to sink environments. Dryad. <a href="https://doi.org/10.5061/dryad.s42n1">https://doi.org/10.5061/dryad.s42n1</a>'
  chicago: 'Lagator, Mato, Andrew Morgan, Paul Neve, and Nick Colegrave. “Data from:
    Role of Sex and Migration in Adaptation to Sink Environments.” Dryad, 2014. <a
    href="https://doi.org/10.5061/dryad.s42n1">https://doi.org/10.5061/dryad.s42n1</a>.'
  ieee: 'M. Lagator, A. Morgan, P. Neve, and N. Colegrave, “Data from: Role of sex
    and migration in adaptation to sink environments.” Dryad, 2014.'
  ista: 'Lagator M, Morgan A, Neve P, Colegrave N. 2014. Data from: Role of sex and
    migration in adaptation to sink environments, Dryad, <a href="https://doi.org/10.5061/dryad.s42n1">10.5061/dryad.s42n1</a>.'
  mla: 'Lagator, Mato, et al. <i>Data from: Role of Sex and Migration in Adaptation
    to Sink Environments</i>. Dryad, 2014, doi:<a href="https://doi.org/10.5061/dryad.s42n1">10.5061/dryad.s42n1</a>.'
  short: M. Lagator, A. Morgan, P. Neve, N. Colegrave, (2014).
date_created: 2021-07-28T15:32:55Z
date_published: 2014-04-17T00:00:00Z
date_updated: 2025-09-29T11:46:47Z
day: '17'
department:
- _id: CaGu
doi: 10.5061/dryad.s42n1
fulldoi: https://doi.org/10.5061/dryad.s42n1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5061/dryad.s42n1
month: '04'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
  record:
  - id: '2083'
    relation: used_in_publication
    status: public
status: public
title: 'Data from: Role of sex and migration in adaptation to sink environments'
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2014'
...
---
_id: '9752'
abstract:
- lang: eng
  text: Redundancies and correlations in the responses of sensory neurons may seem
    to waste neural resources, but they can also carry cues about structured stimuli
    and may help the brain to correct for response errors. To investigate the effect
    of stimulus structure on redundancy in retina, we measured simultaneous responses
    from populations of retinal ganglion cells presented with natural and artificial
    stimuli that varied greatly in correlation structure; these stimuli and recordings
    are publicly available online. Responding to spatio-temporally structured stimuli
    such as natural movies, pairs of ganglion cells were modestly more correlated
    than in response to white noise checkerboards, but they were much less correlated
    than predicted by a non-adapting functional model of retinal response. Meanwhile,
    responding to stimuli with purely spatial correlations, pairs of ganglion cells
    showed increased correlations consistent with a static, non-adapting receptive
    field and nonlinearity. We found that in response to spatio-temporally correlated
    stimuli, ganglion cells had faster temporal kernels and tended to have stronger
    surrounds. These properties of individual cells, along with gain changes that
    opposed changes in effective contrast at the ganglion cell input, largely explained
    the pattern of pairwise correlations across stimuli where receptive field measurements
    were possible.
article_processing_charge: No
author:
- first_name: Kristina
  full_name: Simmons, Kristina
  last_name: Simmons
- first_name: Jason
  full_name: Prentice, Jason
  last_name: Prentice
- first_name: Gašper
  full_name: Tkačik, Gašper
  id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
  last_name: Tkačik
  orcid: 0000-0002-6699-1455
- first_name: Jan
  full_name: Homann, Jan
  last_name: Homann
- first_name: Heather
  full_name: Yee, Heather
  last_name: Yee
- first_name: Stephanie
  full_name: Palmer, Stephanie
  last_name: Palmer
- first_name: Philip
  full_name: Nelson, Philip
  last_name: Nelson
- first_name: Vijay
  full_name: Balasubramanian, Vijay
  last_name: Balasubramanian
citation:
  ama: 'Simmons K, Prentice J, Tkačik G, et al. Data from: Transformation of stimulus
    correlations by the retina. 2014. doi:<a href="https://doi.org/10.5061/dryad.246qg">10.5061/dryad.246qg</a>'
  apa: 'Simmons, K., Prentice, J., Tkačik, G., Homann, J., Yee, H., Palmer, S., …
    Balasubramanian, V. (2014). Data from: Transformation of stimulus correlations
    by the retina. Dryad. <a href="https://doi.org/10.5061/dryad.246qg">https://doi.org/10.5061/dryad.246qg</a>'
  chicago: 'Simmons, Kristina, Jason Prentice, Gašper Tkačik, Jan Homann, Heather
    Yee, Stephanie Palmer, Philip Nelson, and Vijay Balasubramanian. “Data from: Transformation
    of Stimulus Correlations by the Retina.” Dryad, 2014. <a href="https://doi.org/10.5061/dryad.246qg">https://doi.org/10.5061/dryad.246qg</a>.'
  ieee: 'K. Simmons <i>et al.</i>, “Data from: Transformation of stimulus correlations
    by the retina.” Dryad, 2014.'
  ista: 'Simmons K, Prentice J, Tkačik G, Homann J, Yee H, Palmer S, Nelson P, Balasubramanian
    V. 2014. Data from: Transformation of stimulus correlations by the retina, Dryad,
    <a href="https://doi.org/10.5061/dryad.246qg">10.5061/dryad.246qg</a>.'
  mla: 'Simmons, Kristina, et al. <i>Data from: Transformation of Stimulus Correlations
    by the Retina</i>. Dryad, 2014, doi:<a href="https://doi.org/10.5061/dryad.246qg">10.5061/dryad.246qg</a>.'
  short: K. Simmons, J. Prentice, G. Tkačik, J. Homann, H. Yee, S. Palmer, P. Nelson,
    V. Balasubramanian, (2014).
date_created: 2021-07-30T08:13:52Z
date_published: 2014-11-07T00:00:00Z
date_updated: 2025-09-29T14:27:23Z
day: '07'
department:
- _id: GaTk
doi: 10.5061/dryad.246qg
fulldoi: https://doi.org/10.5061/dryad.246qg
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5061/dryad.246qg
month: '11'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
  record:
  - id: '2277'
    relation: used_in_publication
    status: public
status: public
title: 'Data from: Transformation of stimulus correlations by the retina'
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2014'
...
---
_id: '98'
abstract:
- lang: eng
  text: Relaxation and dephasing of hole spins are measured in a gate-defined Ge/Si
    nanowire double quantum dot using a fast pulsed-gate method and dispersive readout.
    An inhomogeneous dephasing time T2* ∼ 0.18 μs exceeds corresponding measurements
    in III-V semiconductors by more than an order of magnitude, as expected for predominately
    nuclear-spin-free materials. Dephasing is observed to be exponential in time,
    indicating the presence of a broadband noise source, rather than Gaussian, previously
    seen in systems with nuclear-spin-dominated dephasing.
acknowledgement: Funding from the Department of Energy, Office of Science & SCGF,
  the EC FP7-ICT project SiSPIN no. 323841, and the Danish National Research Foundation
  is acknowledged.
arxiv: 1
author:
- first_name: Andrew P
  full_name: Higginbotham, Andrew P
  id: 4AD6785A-F248-11E8-B48F-1D18A9856A87
  last_name: Higginbotham
  orcid: 0000-0003-2607-2363
- first_name: Thorvald
  full_name: Larsen, Thorvald
  last_name: Larsen
- first_name: Jun
  full_name: Yao, Jun
  last_name: Yao
- first_name: Hao
  full_name: Yan, Hao
  last_name: Yan
- first_name: Charles
  full_name: Lieber, Charles
  last_name: Lieber
- first_name: Charles
  full_name: Marcus, Charles
  last_name: Marcus
- first_name: Ferdinand
  full_name: Kuemmeth, Ferdinand
  last_name: Kuemmeth
citation:
  ama: Higginbotham AP, Larsen T, Yao J, et al. Hole spin coherence in a Ge/Si heterostructure
    nanowire. <i>Nano Letters</i>. 2014;14(6):3582-3586. doi:<a href="https://doi.org/10.1021/nl501242b">10.1021/nl501242b</a>
  apa: Higginbotham, A. P., Larsen, T., Yao, J., Yan, H., Lieber, C., Marcus, C.,
    &#38; Kuemmeth, F. (2014). Hole spin coherence in a Ge/Si heterostructure nanowire.
    <i>Nano Letters</i>. American Chemical Society. <a href="https://doi.org/10.1021/nl501242b">https://doi.org/10.1021/nl501242b</a>
  chicago: Higginbotham, Andrew P, Thorvald Larsen, Jun Yao, Hao Yan, Charles Lieber,
    Charles Marcus, and Ferdinand Kuemmeth. “Hole Spin Coherence in a Ge/Si Heterostructure
    Nanowire.” <i>Nano Letters</i>. American Chemical Society, 2014. <a href="https://doi.org/10.1021/nl501242b">https://doi.org/10.1021/nl501242b</a>.
  ieee: A. P. Higginbotham <i>et al.</i>, “Hole spin coherence in a Ge/Si heterostructure
    nanowire,” <i>Nano Letters</i>, vol. 14, no. 6. American Chemical Society, pp.
    3582–3586, 2014.
  ista: Higginbotham AP, Larsen T, Yao J, Yan H, Lieber C, Marcus C, Kuemmeth F. 2014.
    Hole spin coherence in a Ge/Si heterostructure nanowire. Nano Letters. 14(6),
    3582–3586.
  mla: Higginbotham, Andrew P., et al. “Hole Spin Coherence in a Ge/Si Heterostructure
    Nanowire.” <i>Nano Letters</i>, vol. 14, no. 6, American Chemical Society, 2014,
    pp. 3582–86, doi:<a href="https://doi.org/10.1021/nl501242b">10.1021/nl501242b</a>.
  short: A.P. Higginbotham, T. Larsen, J. Yao, H. Yan, C. Lieber, C. Marcus, F. Kuemmeth,
    Nano Letters 14 (2014) 3582–3586.
date_created: 2018-12-11T11:44:37Z
date_published: 2014-05-05T00:00:00Z
date_updated: 2021-01-12T08:22:24Z
day: '05'
doi: 10.1021/nl501242b
extern: '1'
external_id:
  arxiv:
  - '1403.2093'
fulldoi: https://doi.org/10.1021/nl501242b
intvolume: '        14'
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1403.2093
month: '05'
oa: 1
oa_version: Preprint
page: 3582 - 3586
publication: Nano Letters
publication_status: published
publisher: American Chemical Society
publist_id: '7956'
quality_controlled: '1'
status: public
title: Hole spin coherence in a Ge/Si heterostructure nanowire
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2014'
...
---
_id: '6739'
abstract:
- lang: eng
  text: 'We explore the relationship between polar and RM codes and we describe a
    coding scheme which improves upon the performance of the standard polar code at
    practical block lengths. Our starting point is the experimental observation that
    RM codes have a smaller error probability than polar codes under MAP decoding.
    This motivates us to introduce a family of codes that “interpolates” between RM
    and polar codes, call this family C inter = {C α : α ∈ [0, 1j}, where C α|α=1
    is the original polar code, and C α|α=0 is an RM code. Based on numerical observations,
    we remark that the error probability under MAP decoding is an increasing function
    of α. MAP decoding has in general exponential complexity, but empirically the
    performance of polar codes at finite block lengths is boosted by moving along
    the family Cinter even under low-complexity decoding schemes such as, for instance,
    belief propagation or successive cancellation list decoder. We demonstrate the
    performance gain via numerical simulations for transmission over the erasure channel
    as well as the Gaussian channel.'
arxiv: 1
author:
- first_name: Marco
  full_name: Mondelli, Marco
  id: 27EB676C-8706-11E9-9510-7717E6697425
  last_name: Mondelli
  orcid: 0000-0002-3242-7020
- first_name: Hamed
  full_name: Hassani, Hamed
  last_name: Hassani
- first_name: Rudiger
  full_name: Urbanke, Rudiger
  last_name: Urbanke
citation:
  ama: 'Mondelli M, Hassani H, Urbanke R. From polar to Reed-Muller codes: A technique
    to improve the finite-length performance. <i>IEEE Transactions on Communications</i>.
    2014;62(9):3084-3091. doi:<a href="https://doi.org/10.1109/tcomm.2014.2345069">10.1109/tcomm.2014.2345069</a>'
  apa: 'Mondelli, M., Hassani, H., &#38; Urbanke, R. (2014). From polar to Reed-Muller
    codes: A technique to improve the finite-length performance. <i>IEEE Transactions
    on Communications</i>. IEEE. <a href="https://doi.org/10.1109/tcomm.2014.2345069">https://doi.org/10.1109/tcomm.2014.2345069</a>'
  chicago: 'Mondelli, Marco, Hamed Hassani, and Rudiger Urbanke. “From Polar to Reed-Muller
    Codes: A Technique to Improve the Finite-Length Performance.” <i>IEEE Transactions
    on Communications</i>. IEEE, 2014. <a href="https://doi.org/10.1109/tcomm.2014.2345069">https://doi.org/10.1109/tcomm.2014.2345069</a>.'
  ieee: 'M. Mondelli, H. Hassani, and R. Urbanke, “From polar to Reed-Muller codes:
    A technique to improve the finite-length performance,” <i>IEEE Transactions on
    Communications</i>, vol. 62, no. 9. IEEE, pp. 3084–3091, 2014.'
  ista: 'Mondelli M, Hassani H, Urbanke R. 2014. From polar to Reed-Muller codes:
    A technique to improve the finite-length performance. IEEE Transactions on Communications.
    62(9), 3084–3091.'
  mla: 'Mondelli, Marco, et al. “From Polar to Reed-Muller Codes: A Technique to Improve
    the Finite-Length Performance.” <i>IEEE Transactions on Communications</i>, vol.
    62, no. 9, IEEE, 2014, pp. 3084–91, doi:<a href="https://doi.org/10.1109/tcomm.2014.2345069">10.1109/tcomm.2014.2345069</a>.'
  short: M. Mondelli, H. Hassani, R. Urbanke, IEEE Transactions on Communications
    62 (2014) 3084–3091.
date_created: 2019-07-31T07:20:21Z
date_published: 2014-09-01T00:00:00Z
date_updated: 2021-01-12T08:08:46Z
day: '01'
doi: 10.1109/tcomm.2014.2345069
extern: '1'
external_id:
  arxiv:
  - '1401.3127'
fulldoi: https://doi.org/10.1109/tcomm.2014.2345069
intvolume: '        62'
issue: '9'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1401.3127
month: '09'
oa: 1
oa_version: Preprint
page: 3084-3091
publication: IEEE Transactions on Communications
publication_identifier:
  issn:
  - 0090-6778
publication_status: published
publisher: IEEE
quality_controlled: '1'
status: public
title: 'From polar to Reed-Muller codes: A technique to improve the finite-length
  performance'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 62
year: '2014'
...
---
_id: '6740'
abstract:
- lang: eng
  text: We describe coding techniques that achieve the capacity of a discrete memoryless
    asymmetric channel. To do so, we discuss how recent advances in coding for symmetric
    channels yield more efficient solutions also for the asymmetric case. In more
    detail, we consider three basic approaches. The first one is Gallager's scheme
    that concatenates a linear code with a non-linear mapper, in order to bias the
    input distribution. We explicitly show that both polar codes and spatially coupled
    codes can be employed in this scenario. Further, we derive a scaling law between
    the gap to capacity, the cardinality of channel input and output alphabets, and
    the required size of the mapper. The second one is an integrated approach in which
    the coding scheme is used both for source coding, in order to create codewords
    with the capacity-achieving distribution, and for channel coding, in order to
    provide error protection. Such a technique has been recently introduced by Honda
    and Yamamoto in the context of polar codes, and we show how to apply it also to
    the design of sparse graph codes. The third approach is based on an idea due to
    Böcherer and Mathar and separates completely the two tasks of source coding and
    channel coding by “chaining” together several codewords. We prove that we can
    combine any suitable source code with any suitable channel code in order to provide
    optimal schemes for asymmetric channels. In particular, polar codes and spatially
    coupled codes fulfill the required conditions.
arxiv: 1
author:
- first_name: Marco
  full_name: Mondelli, Marco
  id: 27EB676C-8706-11E9-9510-7717E6697425
  last_name: Mondelli
  orcid: 0000-0002-3242-7020
- first_name: Rudiger
  full_name: Urbanke, Rudiger
  last_name: Urbanke
- first_name: Hamed
  full_name: Hassani, Hamed
  last_name: Hassani
citation:
  ama: 'Mondelli M, Urbanke R, Hassani H. How to achieve the capacity of asymmetric
    channels. In: <i>52nd Annual Allerton Conference on Communication, Control, and
    Computing</i>. IEEE; 2014:789-796. doi:<a href="https://doi.org/10.1109/allerton.2014.7028535">10.1109/allerton.2014.7028535</a>'
  apa: 'Mondelli, M., Urbanke, R., &#38; Hassani, H. (2014). How to achieve the capacity
    of asymmetric channels. In <i>52nd Annual Allerton Conference on Communication,
    Control, and Computing</i> (pp. 789–796). Monticello, IL, United States: IEEE.
    <a href="https://doi.org/10.1109/allerton.2014.7028535">https://doi.org/10.1109/allerton.2014.7028535</a>'
  chicago: Mondelli, Marco, Rudiger Urbanke, and Hamed Hassani. “How to Achieve the
    Capacity of Asymmetric Channels.” In <i>52nd Annual Allerton Conference on Communication,
    Control, and Computing</i>, 789–96. IEEE, 2014. <a href="https://doi.org/10.1109/allerton.2014.7028535">https://doi.org/10.1109/allerton.2014.7028535</a>.
  ieee: M. Mondelli, R. Urbanke, and H. Hassani, “How to achieve the capacity of asymmetric
    channels,” in <i>52nd Annual Allerton Conference on Communication, Control, and
    Computing</i>, Monticello, IL, United States, 2014, pp. 789–796.
  ista: Mondelli M, Urbanke R, Hassani H. 2014. How to achieve the capacity of asymmetric
    channels. 52nd Annual Allerton Conference on Communication, Control, and Computing.
    Allerton Conference on Communication, Control, and Computing, 789–796.
  mla: Mondelli, Marco, et al. “How to Achieve the Capacity of Asymmetric Channels.”
    <i>52nd Annual Allerton Conference on Communication, Control, and Computing</i>,
    IEEE, 2014, pp. 789–96, doi:<a href="https://doi.org/10.1109/allerton.2014.7028535">10.1109/allerton.2014.7028535</a>.
  short: M. Mondelli, R. Urbanke, H. Hassani, in:, 52nd Annual Allerton Conference
    on Communication, Control, and Computing, IEEE, 2014, pp. 789–796.
conference:
  end_date: 2014-10-03
  location: Monticello, IL, United States
  name: Allerton Conference on Communication, Control, and Computing
  start_date: 2014-09-30
date_created: 2019-07-31T07:24:23Z
date_published: 2014-10-01T00:00:00Z
date_updated: 2023-02-23T12:49:36Z
day: '01'
doi: 10.1109/allerton.2014.7028535
extern: '1'
external_id:
  arxiv:
  - '1406.7373'
fulldoi: https://doi.org/10.1109/allerton.2014.7028535
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1406.7373
month: '10'
oa: 1
oa_version: Preprint
page: 789-796
publication: 52nd Annual Allerton Conference on Communication, Control, and Computing
publication_identifier:
  eisbn:
  - 978-1-4799-8009-3
publication_status: published
publisher: IEEE
quality_controlled: '1'
related_material:
  record:
  - id: '6678'
    relation: later_version
    status: public
status: public
title: How to achieve the capacity of asymmetric channels
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2014'
...
---
_id: '6744'
abstract:
- lang: eng
  text: With the aim of extending the coverage and improving the performance of impulse
    radio ultra-wideband (UWB) systems, this paper focuses on developing a novel single
    differential encoded decode and forward (DF) non-cooperative relaying scheme (NCR).
    To favor simple receiver structures, differential noncoherent detection is employed
    which enables effective energy capture without any channel estimation. Putting
    emphasis on the general case of multi-hop relaying, we illustrate an original
    algorithm for the joint power allocation and path selection (JPAPS), minimizing
    an approximate expression of the overall bit error rate (BER). In particular,
    after deriving a closed-form power allocation strategy, the optimal path selection
    is reduced to a shortest path problem on a connected graph, which can be solved
    without any topology information with complexity O(N 3 ), N being the number of
    available relays of the network. An approximate scheme is also presented, which
    reduces the complexity to O(N 2 ) while showing a negligible performance loss,
    and for benchmarking purposes, an exhaustive-search based multi-hop DF cooperative
    strategy is derived. Simulation results for various network setups corroborate
    the effectiveness of the proposed low-complexity JPAPS algorithm, which favorably
    compares to existing AF and DF relaying methods.
author:
- first_name: Marco
  full_name: Mondelli, Marco
  id: 27EB676C-8706-11E9-9510-7717E6697425
  last_name: Mondelli
  orcid: 0000-0002-3242-7020
- first_name: Qi
  full_name: Zhou, Qi
  last_name: Zhou
- first_name: Vincenzo
  full_name: Lottici, Vincenzo
  last_name: Lottici
- first_name: Xiaoli
  full_name: Ma, Xiaoli
  last_name: Ma
citation:
  ama: Mondelli M, Zhou Q, Lottici V, Ma X. Joint power allocation and path selection
    for multi-hop noncoherent decode and forward UWB communications. <i>IEEE Transactions
    on Wireless Communications</i>. 2014;13(3):1397-1409. doi:<a href="https://doi.org/10.1109/twc.2014.020914.130669">10.1109/twc.2014.020914.130669</a>
  apa: Mondelli, M., Zhou, Q., Lottici, V., &#38; Ma, X. (2014). Joint power allocation
    and path selection for multi-hop noncoherent decode and forward UWB communications.
    <i>IEEE Transactions on Wireless Communications</i>. IEEE. <a href="https://doi.org/10.1109/twc.2014.020914.130669">https://doi.org/10.1109/twc.2014.020914.130669</a>
  chicago: Mondelli, Marco, Qi Zhou, Vincenzo Lottici, and Xiaoli Ma. “Joint Power
    Allocation and Path Selection for Multi-Hop Noncoherent Decode and Forward UWB
    Communications.” <i>IEEE Transactions on Wireless Communications</i>. IEEE, 2014.
    <a href="https://doi.org/10.1109/twc.2014.020914.130669">https://doi.org/10.1109/twc.2014.020914.130669</a>.
  ieee: M. Mondelli, Q. Zhou, V. Lottici, and X. Ma, “Joint power allocation and path
    selection for multi-hop noncoherent decode and forward UWB communications,” <i>IEEE
    Transactions on Wireless Communications</i>, vol. 13, no. 3. IEEE, pp. 1397–1409,
    2014.
  ista: Mondelli M, Zhou Q, Lottici V, Ma X. 2014. Joint power allocation and path
    selection for multi-hop noncoherent decode and forward UWB communications. IEEE
    Transactions on Wireless Communications. 13(3), 1397–1409.
  mla: Mondelli, Marco, et al. “Joint Power Allocation and Path Selection for Multi-Hop
    Noncoherent Decode and Forward UWB Communications.” <i>IEEE Transactions on Wireless
    Communications</i>, vol. 13, no. 3, IEEE, 2014, pp. 1397–409, doi:<a href="https://doi.org/10.1109/twc.2014.020914.130669">10.1109/twc.2014.020914.130669</a>.
  short: M. Mondelli, Q. Zhou, V. Lottici, X. Ma, IEEE Transactions on Wireless Communications
    13 (2014) 1397–1409.
date_created: 2019-07-31T09:05:07Z
date_published: 2014-03-20T00:00:00Z
date_updated: 2021-01-12T08:08:48Z
day: '20'
doi: 10.1109/twc.2014.020914.130669
extern: '1'
fulldoi: https://doi.org/10.1109/twc.2014.020914.130669
intvolume: '        13'
issue: '3'
language:
- iso: eng
month: '03'
oa_version: None
page: 1397-1409
publication: IEEE Transactions on Wireless Communications
publication_status: published
publisher: IEEE
quality_controlled: '1'
status: public
title: Joint power allocation and path selection for multi-hop noncoherent decode
  and forward UWB communications
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2014'
...
---
_id: '6853'
abstract:
- lang: eng
  text: This monograph presents a short course in computational geometry and topology.
    In the first part the book covers Voronoi diagrams and Delaunay triangulations,
    then it presents the theory of alpha complexes which play a crucial role in biology.
    The central part of the book is the homology theory and their computation, including
    the theory of persistence which is indispensable for applications, e.g. shape
    reconstruction. The target audience comprises researchers and practitioners in
    mathematics, biology, neuroscience and computer science, but the book may also
    be beneficial to graduate students of these fields.
alternative_title:
- SpringerBriefs in Applied Sciences and Technology
article_processing_charge: No
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
citation:
  ama: 'Edelsbrunner H. <i>A Short Course in Computational Geometry and Topology</i>.
    1st ed. Cham: Springer Nature; 2014. doi:<a href="https://doi.org/10.1007/978-3-319-05957-0">10.1007/978-3-319-05957-0</a>'
  apa: 'Edelsbrunner, H. (2014). <i>A Short Course in Computational Geometry and Topology</i>
    (1st ed.). Cham: Springer Nature. <a href="https://doi.org/10.1007/978-3-319-05957-0">https://doi.org/10.1007/978-3-319-05957-0</a>'
  chicago: 'Edelsbrunner, Herbert. <i>A Short Course in Computational Geometry and
    Topology</i>. 1st ed. SpringerBriefs in Applied Sciences and Technology. Cham:
    Springer Nature, 2014. <a href="https://doi.org/10.1007/978-3-319-05957-0">https://doi.org/10.1007/978-3-319-05957-0</a>.'
  ieee: 'H. Edelsbrunner, <i>A Short Course in Computational Geometry and Topology</i>,
    1st ed. Cham: Springer Nature, 2014.'
  ista: 'Edelsbrunner H. 2014. A Short Course in Computational Geometry and Topology
    1st ed., Cham: Springer Nature, IX, 110p.'
  mla: Edelsbrunner, Herbert. <i>A Short Course in Computational Geometry and Topology</i>.
    1st ed., Springer Nature, 2014, doi:<a href="https://doi.org/10.1007/978-3-319-05957-0">10.1007/978-3-319-05957-0</a>.
  short: H. Edelsbrunner, A Short Course in Computational Geometry and Topology, 1st
    ed., Springer Nature, Cham, 2014.
date_created: 2019-09-06T09:22:33Z
date_published: 2014-01-01T00:00:00Z
date_updated: 2022-03-04T07:47:54Z
day: '01'
department:
- _id: HeEd
doi: 10.1007/978-3-319-05957-0
edition: '1'
fulldoi: https://doi.org/10.1007/978-3-319-05957-0
language:
- iso: eng
month: '01'
oa_version: None
page: IX, 110
place: Cham
publication_identifier:
  eisbn:
  - 9-783-3190-5957-0
  eissn:
  - 2191-5318
  isbn:
  - 9-783-3190-5956-3
  issn:
  - 2191-530X
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - description: available as eBook via catalog IST BookList
    relation: other
    url: https://koha.app.ist.ac.at/cgi-bin/koha/opac-detail.pl?biblionumber=356106
  - description: available via catalog IST BookList
    relation: other
    url: https://koha.app.ist.ac.at/cgi-bin/koha/opac-detail.pl?biblionumber=373842
scopus_import: '1'
series_title: SpringerBriefs in Applied Sciences and Technology
status: public
title: A Short Course in Computational Geometry and Topology
type: book
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2014'
...
---
_id: '7038'
article_processing_charge: No
author:
- first_name: Kristóf
  full_name: Huszár, Kristóf
  id: 33C26278-F248-11E8-B48F-1D18A9856A87
  last_name: Huszár
  orcid: 0000-0002-5445-5057
- first_name: Michal
  full_name: Rolinek, Michal
  id: 3CB3BC06-F248-11E8-B48F-1D18A9856A87
  last_name: Rolinek
citation:
  ama: Huszár K, Rolinek M. <i>Playful Math - An Introduction to Mathematical Games</i>.
    IST Austria
  apa: Huszár, K., &#38; Rolinek, M. (n.d.). <i>Playful Math - An introduction to
    mathematical games</i>. IST Austria.
  chicago: Huszár, Kristóf, and Michal Rolinek. <i>Playful Math - An Introduction
    to Mathematical Games</i>. IST Austria, n.d.
  ieee: K. Huszár and M. Rolinek, <i>Playful Math - An introduction to mathematical
    games</i>. IST Austria.
  ista: Huszár K, Rolinek M. Playful Math - An introduction to mathematical games,
    IST Austria, 5p.
  mla: Huszár, Kristóf, and Michal Rolinek. <i>Playful Math - An Introduction to Mathematical
    Games</i>. IST Austria.
  short: K. Huszár, M. Rolinek, Playful Math - An Introduction to Mathematical Games,
    IST Austria, n.d.
corr_author: '1'
date_created: 2019-11-18T15:57:05Z
date_published: 2014-06-30T00:00:00Z
date_updated: 2025-06-26T12:38:53Z
day: '30'
ddc:
- '510'
department:
- _id: VlKo
- _id: UlWa
file:
- access_level: open_access
  checksum: 2b94e5e1f4c3fe8ab89b12806276fb09
  content_type: application/pdf
  creator: dernst
  date_created: 2019-11-18T15:57:51Z
  date_updated: 2020-07-14T12:47:48Z
  file_id: '7039'
  file_name: 2014_Playful_Math_Huszar.pdf
  file_size: 511233
  relation: main_file
file_date_updated: 2020-07-14T12:47:48Z
has_accepted_license: '1'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: '5'
publication_status: draft
publisher: IST Austria
status: public
title: Playful Math - An introduction to mathematical games
type: working_paper
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2014'
...
---
_id: '7071'
abstract:
- lang: eng
  text: Spin and orbital quantum numbers play a key role in the physics of Mott insulators,
    but in most systems they are connected only indirectly—via the Pauli exclusion
    principle and the Coulomb interaction. Iridium-based oxides (iridates) introduce
    strong spin–orbit coupling directly, such that these numbers become entwined together
    and the Mott physics attains a strong orbital character. In the layered honeycomb
    iridates this is thought to generate highly spin–anisotropic magnetic interactions,
    coupling the spin to a given spatial direction of exchange and leading to strongly
    frustrated magnetism. Here we report a new iridate structure that has the same
    local connectivity as the layered honeycomb and exhibits striking evidence for
    highly spin–anisotropic exchange. The basic structural units of this material
    suggest that a new family of three-dimensional structures could exist, the ‘harmonic
    honeycomb’ iridates, of which the present compound is the first example.
article_number: '4203'
article_processing_charge: No
article_type: original
author:
- first_name: Kimberly A
  full_name: Modic, Kimberly A
  id: 13C26AC0-EB69-11E9-87C6-5F3BE6697425
  last_name: Modic
  orcid: 0000-0001-9760-3147
- first_name: Tess E.
  full_name: Smidt, Tess E.
  last_name: Smidt
- first_name: Itamar
  full_name: Kimchi, Itamar
  last_name: Kimchi
- first_name: Nicholas P.
  full_name: Breznay, Nicholas P.
  last_name: Breznay
- first_name: Alun
  full_name: Biffin, Alun
  last_name: Biffin
- first_name: Sungkyun
  full_name: Choi, Sungkyun
  last_name: Choi
- first_name: Roger D.
  full_name: Johnson, Roger D.
  last_name: Johnson
- first_name: Radu
  full_name: Coldea, Radu
  last_name: Coldea
- first_name: Pilanda
  full_name: Watkins-Curry, Pilanda
  last_name: Watkins-Curry
- first_name: Gregory T.
  full_name: McCandless, Gregory T.
  last_name: McCandless
- first_name: Julia Y.
  full_name: Chan, Julia Y.
  last_name: Chan
- first_name: Felipe
  full_name: Gandara, Felipe
  last_name: Gandara
- first_name: Z.
  full_name: Islam, Z.
  last_name: Islam
- first_name: Ashvin
  full_name: Vishwanath, Ashvin
  last_name: Vishwanath
- first_name: Arkady
  full_name: Shekhter, Arkady
  last_name: Shekhter
- first_name: Ross D.
  full_name: McDonald, Ross D.
  last_name: McDonald
- first_name: James G.
  full_name: Analytis, James G.
  last_name: Analytis
citation:
  ama: Modic KA, Smidt TE, Kimchi I, et al. Realization of a three-dimensional spin–anisotropic
    harmonic honeycomb iridate. <i>Nature Communications</i>. 2014;5. doi:<a href="https://doi.org/10.1038/ncomms5203">10.1038/ncomms5203</a>
  apa: Modic, K. A., Smidt, T. E., Kimchi, I., Breznay, N. P., Biffin, A., Choi, S.,
    … Analytis, J. G. (2014). Realization of a three-dimensional spin–anisotropic
    harmonic honeycomb iridate. <i>Nature Communications</i>. Springer Science and
    Business Media LLC. <a href="https://doi.org/10.1038/ncomms5203">https://doi.org/10.1038/ncomms5203</a>
  chicago: Modic, Kimberly A, Tess E. Smidt, Itamar Kimchi, Nicholas P. Breznay, Alun
    Biffin, Sungkyun Choi, Roger D. Johnson, et al. “Realization of a Three-Dimensional
    Spin–Anisotropic Harmonic Honeycomb Iridate.” <i>Nature Communications</i>. Springer
    Science and Business Media LLC, 2014. <a href="https://doi.org/10.1038/ncomms5203">https://doi.org/10.1038/ncomms5203</a>.
  ieee: K. A. Modic <i>et al.</i>, “Realization of a three-dimensional spin–anisotropic
    harmonic honeycomb iridate,” <i>Nature Communications</i>, vol. 5. Springer Science
    and Business Media LLC, 2014.
  ista: Modic KA, Smidt TE, Kimchi I, Breznay NP, Biffin A, Choi S, Johnson RD, Coldea
    R, Watkins-Curry P, McCandless GT, Chan JY, Gandara F, Islam Z, Vishwanath A,
    Shekhter A, McDonald RD, Analytis JG. 2014. Realization of a three-dimensional
    spin–anisotropic harmonic honeycomb iridate. Nature Communications. 5, 4203.
  mla: Modic, Kimberly A., et al. “Realization of a Three-Dimensional Spin–Anisotropic
    Harmonic Honeycomb Iridate.” <i>Nature Communications</i>, vol. 5, 4203, Springer
    Science and Business Media LLC, 2014, doi:<a href="https://doi.org/10.1038/ncomms5203">10.1038/ncomms5203</a>.
  short: K.A. Modic, T.E. Smidt, I. Kimchi, N.P. Breznay, A. Biffin, S. Choi, R.D.
    Johnson, R. Coldea, P. Watkins-Curry, G.T. McCandless, J.Y. Chan, F. Gandara,
    Z. Islam, A. Vishwanath, A. Shekhter, R.D. McDonald, J.G. Analytis, Nature Communications
    5 (2014).
date_created: 2019-11-19T13:22:39Z
date_published: 2014-06-27T00:00:00Z
date_updated: 2021-01-12T08:11:42Z
day: '27'
ddc:
- '530'
doi: 10.1038/ncomms5203
extern: '1'
file:
- access_level: open_access
  checksum: d290f0bfa93c5169cc6c8086874c5a78
  content_type: application/pdf
  creator: dernst
  date_created: 2019-11-26T12:44:23Z
  date_updated: 2020-07-14T12:47:48Z
  file_id: '7113'
  file_name: 2014_NatureComm_Modic.pdf
  file_size: 4832820
  relation: main_file
file_date_updated: 2020-07-14T12:47:48Z
fulldoi: https://doi.org/10.1038/ncomms5203
has_accepted_license: '1'
intvolume: '         5'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '06'
oa: 1
oa_version: Published Version
publication: Nature Communications
publication_identifier:
  issn:
  - 2041-1723
publication_status: published
publisher: Springer Science and Business Media LLC
quality_controlled: '1'
status: public
title: Realization of a three-dimensional spin–anisotropic harmonic honeycomb iridate
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2014'
...
---
_id: '7072'
abstract:
- lang: eng
  text: We investigate the structural and magnetic properties of two molecule-based
    magnets synthesized from the same starting components. Their different structural
    motifs promote contrasting exchange pathways and consequently lead to markedly
    different magnetic ground states. Through examination of their structural and
    magnetic properties we show that [Cu(pyz)(H2O)(gly)2](ClO4)2 may be considered
    a quasi-one-dimensional quantum Heisenberg antiferromagnet whereas the related
    compound [Cu(pyz)(gly)](ClO4), which is formed from dimers of antiferromagnetically
    interacting Cu2+ spins, remains disordered down to at least 0.03 K in zero field
    but shows a field-temperature phase diagram reminiscent of that seen in materials
    showing a Bose-Einstein condensation of magnons.
article_number: '207201'
article_processing_charge: No
article_type: original
author:
- first_name: T.
  full_name: Lancaster, T.
  last_name: Lancaster
- first_name: P. A.
  full_name: Goddard, P. A.
  last_name: Goddard
- first_name: S. J.
  full_name: Blundell, S. J.
  last_name: Blundell
- first_name: F. R.
  full_name: Foronda, F. R.
  last_name: Foronda
- first_name: S.
  full_name: Ghannadzadeh, S.
  last_name: Ghannadzadeh
- first_name: J. S.
  full_name: Möller, J. S.
  last_name: Möller
- first_name: P. J.
  full_name: Baker, P. J.
  last_name: Baker
- first_name: F. L.
  full_name: Pratt, F. L.
  last_name: Pratt
- first_name: C.
  full_name: Baines, C.
  last_name: Baines
- first_name: L.
  full_name: Huang, L.
  last_name: Huang
- first_name: J.
  full_name: Wosnitza, J.
  last_name: Wosnitza
- first_name: R. D.
  full_name: McDonald, R. D.
  last_name: McDonald
- first_name: Kimberly A
  full_name: Modic, Kimberly A
  id: 13C26AC0-EB69-11E9-87C6-5F3BE6697425
  last_name: Modic
  orcid: 0000-0001-9760-3147
- first_name: J.
  full_name: Singleton, J.
  last_name: Singleton
- first_name: C. V.
  full_name: Topping, C. V.
  last_name: Topping
- first_name: T. A. W.
  full_name: Beale, T. A. W.
  last_name: Beale
- first_name: F.
  full_name: Xiao, F.
  last_name: Xiao
- first_name: J. A.
  full_name: Schlueter, J. A.
  last_name: Schlueter
- first_name: A. M.
  full_name: Barton, A. M.
  last_name: Barton
- first_name: R. D.
  full_name: Cabrera, R. D.
  last_name: Cabrera
- first_name: K. E.
  full_name: Carreiro, K. E.
  last_name: Carreiro
- first_name: H. E.
  full_name: Tran, H. E.
  last_name: Tran
- first_name: J. L.
  full_name: Manson, J. L.
  last_name: Manson
citation:
  ama: Lancaster T, Goddard PA, Blundell SJ, et al. Controlling magnetic order and
    quantum disorder in molecule-based magnets. <i>Physical Review Letters</i>. 2014;112(20).
    doi:<a href="https://doi.org/10.1103/physrevlett.112.207201">10.1103/physrevlett.112.207201</a>
  apa: Lancaster, T., Goddard, P. A., Blundell, S. J., Foronda, F. R., Ghannadzadeh,
    S., Möller, J. S., … Manson, J. L. (2014). Controlling magnetic order and quantum
    disorder in molecule-based magnets. <i>Physical Review Letters</i>. APS. <a href="https://doi.org/10.1103/physrevlett.112.207201">https://doi.org/10.1103/physrevlett.112.207201</a>
  chicago: Lancaster, T., P. A. Goddard, S. J. Blundell, F. R. Foronda, S. Ghannadzadeh,
    J. S. Möller, P. J. Baker, et al. “Controlling Magnetic Order and Quantum Disorder
    in Molecule-Based Magnets.” <i>Physical Review Letters</i>. APS, 2014. <a href="https://doi.org/10.1103/physrevlett.112.207201">https://doi.org/10.1103/physrevlett.112.207201</a>.
  ieee: T. Lancaster <i>et al.</i>, “Controlling magnetic order and quantum disorder
    in molecule-based magnets,” <i>Physical Review Letters</i>, vol. 112, no. 20.
    APS, 2014.
  ista: Lancaster T, Goddard PA, Blundell SJ, Foronda FR, Ghannadzadeh S, Möller JS,
    Baker PJ, Pratt FL, Baines C, Huang L, Wosnitza J, McDonald RD, Modic KA, Singleton
    J, Topping CV, Beale TAW, Xiao F, Schlueter JA, Barton AM, Cabrera RD, Carreiro
    KE, Tran HE, Manson JL. 2014. Controlling magnetic order and quantum disorder
    in molecule-based magnets. Physical Review Letters. 112(20), 207201.
  mla: Lancaster, T., et al. “Controlling Magnetic Order and Quantum Disorder in Molecule-Based
    Magnets.” <i>Physical Review Letters</i>, vol. 112, no. 20, 207201, APS, 2014,
    doi:<a href="https://doi.org/10.1103/physrevlett.112.207201">10.1103/physrevlett.112.207201</a>.
  short: T. Lancaster, P.A. Goddard, S.J. Blundell, F.R. Foronda, S. Ghannadzadeh,
    J.S. Möller, P.J. Baker, F.L. Pratt, C. Baines, L. Huang, J. Wosnitza, R.D. McDonald,
    K.A. Modic, J. Singleton, C.V. Topping, T.A.W. Beale, F. Xiao, J.A. Schlueter,
    A.M. Barton, R.D. Cabrera, K.E. Carreiro, H.E. Tran, J.L. Manson, Physical Review
    Letters 112 (2014).
date_created: 2019-11-19T13:23:13Z
date_published: 2014-05-19T00:00:00Z
date_updated: 2021-01-12T08:11:42Z
day: '19'
doi: 10.1103/physrevlett.112.207201
extern: '1'
fulldoi: https://doi.org/10.1103/physrevlett.112.207201
intvolume: '       112'
issue: '20'
language:
- iso: eng
month: '05'
oa_version: None
publication: Physical Review Letters
publication_identifier:
  eissn:
  - 1079-7114
  issn:
  - 0031-9007
publication_status: published
publisher: APS
quality_controlled: '1'
status: public
title: Controlling magnetic order and quantum disorder in molecule-based magnets
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 112
year: '2014'
...
---
_id: '7300'
abstract:
- lang: eng
  text: Photoinduced electron transfer (PET), which causes pH-dependent quenching
    of fluorescent dyes, is more effectively introduced by phenolic groups than by
    amino groups which have been much more commonly used so far. That is demonstrated
    by fluorescence measurements involving several classes of fluorophores. Electrochemical
    measurements show that PET in several amino-modified dyes is thermodynamically
    favorable, even though it was not experimentally found, underlining the importance
    of kinetic aspects to the process. Consequently, the attachment of phenolic groups
    allows for fast and simple preparation of a wide selection of fluorescent pH-probes
    with tailor-made spectral properties, sensitive ranges, and individual advantages,
    so that a large number of applications can be realized. Fluorophores carrying
    phenolic groups may also be used for sensing analytes other than pH or molecular
    switching and signaling.
article_processing_charge: No
article_type: original
author:
- first_name: Daniel
  full_name: Aigner, Daniel
  last_name: Aigner
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
- first_name: Martin
  full_name: Wilkening, Martin
  last_name: Wilkening
- first_name: Robert
  full_name: Saf, Robert
  last_name: Saf
- first_name: Sergey M.
  full_name: Borisov, Sergey M.
  last_name: Borisov
- first_name: Ingo
  full_name: Klimant, Ingo
  last_name: Klimant
citation:
  ama: Aigner D, Freunberger SA, Wilkening M, Saf R, Borisov SM, Klimant I. Enhancing
    photoinduced electron transfer efficiency of fluorescent pH-probes with halogenated
    phenols. <i>Analytical Chemistry</i>. 2014;86(18):9293-9300. doi:<a href="https://doi.org/10.1021/ac502513g">10.1021/ac502513g</a>
  apa: Aigner, D., Freunberger, S. A., Wilkening, M., Saf, R., Borisov, S. M., &#38;
    Klimant, I. (2014). Enhancing photoinduced electron transfer efficiency of fluorescent
    pH-probes with halogenated phenols. <i>Analytical Chemistry</i>. ACS. <a href="https://doi.org/10.1021/ac502513g">https://doi.org/10.1021/ac502513g</a>
  chicago: Aigner, Daniel, Stefan Alexander Freunberger, Martin Wilkening, Robert
    Saf, Sergey M. Borisov, and Ingo Klimant. “Enhancing Photoinduced Electron Transfer
    Efficiency of Fluorescent PH-Probes with Halogenated Phenols.” <i>Analytical Chemistry</i>.
    ACS, 2014. <a href="https://doi.org/10.1021/ac502513g">https://doi.org/10.1021/ac502513g</a>.
  ieee: D. Aigner, S. A. Freunberger, M. Wilkening, R. Saf, S. M. Borisov, and I.
    Klimant, “Enhancing photoinduced electron transfer efficiency of fluorescent pH-probes
    with halogenated phenols,” <i>Analytical Chemistry</i>, vol. 86, no. 18. ACS,
    pp. 9293–9300, 2014.
  ista: Aigner D, Freunberger SA, Wilkening M, Saf R, Borisov SM, Klimant I. 2014.
    Enhancing photoinduced electron transfer efficiency of fluorescent pH-probes with
    halogenated phenols. Analytical Chemistry. 86(18), 9293–9300.
  mla: Aigner, Daniel, et al. “Enhancing Photoinduced Electron Transfer Efficiency
    of Fluorescent PH-Probes with Halogenated Phenols.” <i>Analytical Chemistry</i>,
    vol. 86, no. 18, ACS, 2014, pp. 9293–300, doi:<a href="https://doi.org/10.1021/ac502513g">10.1021/ac502513g</a>.
  short: D. Aigner, S.A. Freunberger, M. Wilkening, R. Saf, S.M. Borisov, I. Klimant,
    Analytical Chemistry 86 (2014) 9293–9300.
date_created: 2020-01-15T12:17:17Z
date_published: 2014-08-14T00:00:00Z
date_updated: 2021-01-12T08:12:53Z
day: '14'
doi: 10.1021/ac502513g
extern: '1'
fulldoi: https://doi.org/10.1021/ac502513g
intvolume: '        86'
issue: '18'
language:
- iso: eng
month: '08'
oa_version: None
page: 9293-9300
publication: Analytical Chemistry
publication_identifier:
  issn:
  - 0003-2700
  - 1520-6882
publication_status: published
publisher: ACS
quality_controlled: '1'
status: public
title: Enhancing photoinduced electron transfer efficiency of fluorescent pH-probes
  with halogenated phenols
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 86
year: '2014'
...
---
_id: '7301'
abstract:
- lang: eng
  text: Several problems arise at the O2 (positive) electrode in the Li-air battery,
    including solvent/electrode decomposition and electrode passivation by insulating
    Li2O2. Progress partially depends on exploring the basic electrochemistry of O2
    reduction. Here we describe the effect of complexing-cations on the electrochemical
    reduction of O2 in DMSO in the presence and absence of a Li salt. The solubility
    of alkaline peroxides in DMSO is enhanced by the complexing-cations, consistent
    with their strong interaction with reduced O2. The complexing-cations also increase
    the rate of the 1-electron O2 reduction to O2•– by up to six-fold (k° = 2.4 ×10–3
    to 1.5 × 10–2 cm s–1) whether or not Li+ ions are present. In the absence of Li+,
    the complexing-cations also promote the reduction of O2•– to O22–. In the presence
    of Li+ and complexing-cations, and despite the interaction of the reduced O2 with
    the latter, SERS confirms that the product is still Li2O2.
article_processing_charge: No
article_type: original
author:
- first_name: Chunmei
  full_name: Li, Chunmei
  last_name: Li
- first_name: Olivier
  full_name: Fontaine, Olivier
  last_name: Fontaine
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
- first_name: Lee
  full_name: Johnson, Lee
  last_name: Johnson
- first_name: Sylvie
  full_name: Grugeon, Sylvie
  last_name: Grugeon
- first_name: Stéphane
  full_name: Laruelle, Stéphane
  last_name: Laruelle
- first_name: Peter G.
  full_name: Bruce, Peter G.
  last_name: Bruce
- first_name: Michel
  full_name: Armand, Michel
  last_name: Armand
citation:
  ama: 'Li C, Fontaine O, Freunberger SA, et al. Aprotic Li–O2 battery: Influence
    of complexing agents on oxygen reduction in an aprotic solvent. <i>The Journal
    of Physical Chemistry C</i>. 2014;118(7):3393-3401. doi:<a href="https://doi.org/10.1021/jp4093805">10.1021/jp4093805</a>'
  apa: 'Li, C., Fontaine, O., Freunberger, S. A., Johnson, L., Grugeon, S., Laruelle,
    S., … Armand, M. (2014). Aprotic Li–O2 battery: Influence of complexing agents
    on oxygen reduction in an aprotic solvent. <i>The Journal of Physical Chemistry
    C</i>. ACS. <a href="https://doi.org/10.1021/jp4093805">https://doi.org/10.1021/jp4093805</a>'
  chicago: 'Li, Chunmei, Olivier Fontaine, Stefan Alexander Freunberger, Lee Johnson,
    Sylvie Grugeon, Stéphane Laruelle, Peter G. Bruce, and Michel Armand. “Aprotic
    Li–O2 Battery: Influence of Complexing Agents on Oxygen Reduction in an Aprotic
    Solvent.” <i>The Journal of Physical Chemistry C</i>. ACS, 2014. <a href="https://doi.org/10.1021/jp4093805">https://doi.org/10.1021/jp4093805</a>.'
  ieee: 'C. Li <i>et al.</i>, “Aprotic Li–O2 battery: Influence of complexing agents
    on oxygen reduction in an aprotic solvent,” <i>The Journal of Physical Chemistry
    C</i>, vol. 118, no. 7. ACS, pp. 3393–3401, 2014.'
  ista: 'Li C, Fontaine O, Freunberger SA, Johnson L, Grugeon S, Laruelle S, Bruce
    PG, Armand M. 2014. Aprotic Li–O2 battery: Influence of complexing agents on oxygen
    reduction in an aprotic solvent. The Journal of Physical Chemistry C. 118(7),
    3393–3401.'
  mla: 'Li, Chunmei, et al. “Aprotic Li–O2 Battery: Influence of Complexing Agents
    on Oxygen Reduction in an Aprotic Solvent.” <i>The Journal of Physical Chemistry
    C</i>, vol. 118, no. 7, ACS, 2014, pp. 3393–401, doi:<a href="https://doi.org/10.1021/jp4093805">10.1021/jp4093805</a>.'
  short: C. Li, O. Fontaine, S.A. Freunberger, L. Johnson, S. Grugeon, S. Laruelle,
    P.G. Bruce, M. Armand, The Journal of Physical Chemistry C 118 (2014) 3393–3401.
date_created: 2020-01-15T12:17:28Z
date_published: 2014-01-29T00:00:00Z
date_updated: 2021-01-12T08:12:53Z
day: '29'
doi: 10.1021/jp4093805
extern: '1'
fulldoi: https://doi.org/10.1021/jp4093805
intvolume: '       118'
issue: '7'
language:
- iso: eng
month: '01'
oa_version: None
page: 3393-3401
publication: The Journal of Physical Chemistry C
publication_identifier:
  issn:
  - 1932-7447
  - 1932-7455
publication_status: published
publisher: ACS
quality_controlled: '1'
status: public
title: 'Aprotic Li–O2 battery: Influence of complexing agents on oxygen reduction
  in an aprotic solvent'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 118
year: '2014'
...
---
_id: '7302'
abstract:
- lang: eng
  text: Understanding charge carrier transport in Li2O2, the storage material in the
    non-aqueous Li-O2 battery, is key to the development of this high-energy battery.
    Here, we studied ionic transport properties and Li self-diffusion in nanocrystalline
    Li2O2 by conductivity and temperature variable 7Li NMR spectroscopy. Nanostructured
    Li2O2, characterized by a mean crystallite size of less than 50 nm as estimated
    from X-ray diffraction peak broadening, was prepared by high-energy ball milling
    of microcrystalline lithium peroxide with μm sized crystallites. At room temperature
    the overall conductivity σ of the microcrystalline reference sample turned out
    to be very low (3.4 × 10−13 S cm−1) which is in agreement with results from temperature-variable
    7Li NMR line shape measurements. Ball-milling, however, leads to an increase of
    σ by approximately two orders of magnitude (1.1 × 10−10 S cm−1); correspondingly,
    the activation energy decreases from 0.89 eV to 0.82 eV. The electronic contribution
    σeon, however, is in the order of 9 × 10−12 S cm−1 which makes less than 10% of
    the total value. Interestingly, 7Li NMR lines of nano-Li2O2 undergo pronounced
    heterogeneous motional narrowing which manifests in a two-component line shape
    emerging with increasing temperatures. Most likely, the enhancement in σ can be
    traced back to the generation of a spin reservoir with highly mobile Li ions;
    these are expected to reside in the nearest neighbourhood of defects generated
    or near the structurally disordered and defect-rich interfacial regions formed
    during mechanical treatment.
article_processing_charge: No
article_type: original
author:
- first_name: A.
  full_name: Dunst, A.
  last_name: Dunst
- first_name: V.
  full_name: Epp, V.
  last_name: Epp
- first_name: I.
  full_name: Hanzu, I.
  last_name: Hanzu
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
- first_name: M.
  full_name: Wilkening, M.
  last_name: Wilkening
citation:
  ama: Dunst A, Epp V, Hanzu I, Freunberger SA, Wilkening M. Short-range Li diffusion
    vs. long-range ionic conduction in nanocrystalline lithium peroxide Li2O2—the
    discharge product in lithium-air batteries. <i>Energy &#38; Environmental Science</i>.
    2014;7(8):2739-2752. doi:<a href="https://doi.org/10.1039/c4ee00496e">10.1039/c4ee00496e</a>
  apa: Dunst, A., Epp, V., Hanzu, I., Freunberger, S. A., &#38; Wilkening, M. (2014).
    Short-range Li diffusion vs. long-range ionic conduction in nanocrystalline lithium
    peroxide Li2O2—the discharge product in lithium-air batteries. <i>Energy &#38;
    Environmental Science</i>. RSC. <a href="https://doi.org/10.1039/c4ee00496e">https://doi.org/10.1039/c4ee00496e</a>
  chicago: Dunst, A., V. Epp, I. Hanzu, Stefan Alexander Freunberger, and M. Wilkening.
    “Short-Range Li Diffusion vs. Long-Range Ionic Conduction in Nanocrystalline Lithium
    Peroxide Li2O2—the Discharge Product in Lithium-Air Batteries.” <i>Energy &#38;
    Environmental Science</i>. RSC, 2014. <a href="https://doi.org/10.1039/c4ee00496e">https://doi.org/10.1039/c4ee00496e</a>.
  ieee: A. Dunst, V. Epp, I. Hanzu, S. A. Freunberger, and M. Wilkening, “Short-range
    Li diffusion vs. long-range ionic conduction in nanocrystalline lithium peroxide
    Li2O2—the discharge product in lithium-air batteries,” <i>Energy &#38; Environmental
    Science</i>, vol. 7, no. 8. RSC, pp. 2739–2752, 2014.
  ista: Dunst A, Epp V, Hanzu I, Freunberger SA, Wilkening M. 2014. Short-range Li
    diffusion vs. long-range ionic conduction in nanocrystalline lithium peroxide
    Li2O2—the discharge product in lithium-air batteries. Energy &#38; Environmental
    Science. 7(8), 2739–2752.
  mla: Dunst, A., et al. “Short-Range Li Diffusion vs. Long-Range Ionic Conduction
    in Nanocrystalline Lithium Peroxide Li2O2—the Discharge Product in Lithium-Air
    Batteries.” <i>Energy &#38; Environmental Science</i>, vol. 7, no. 8, RSC, 2014,
    pp. 2739–52, doi:<a href="https://doi.org/10.1039/c4ee00496e">10.1039/c4ee00496e</a>.
  short: A. Dunst, V. Epp, I. Hanzu, S.A. Freunberger, M. Wilkening, Energy &#38;
    Environmental Science 7 (2014) 2739–2752.
date_created: 2020-01-15T12:17:43Z
date_published: 2014-08-01T00:00:00Z
date_updated: 2021-01-12T08:12:53Z
day: '01'
doi: 10.1039/c4ee00496e
extern: '1'
fulldoi: https://doi.org/10.1039/c4ee00496e
intvolume: '         7'
issue: '8'
language:
- iso: eng
month: '08'
oa_version: Published Version
page: 2739-2752
publication: Energy & Environmental Science
publication_identifier:
  issn:
  - 1754-5692
  - 1754-5706
publication_status: published
publisher: RSC
quality_controlled: '1'
status: public
title: Short-range Li diffusion vs. long-range ionic conduction in nanocrystalline
  lithium peroxide Li2O2—the discharge product in lithium-air batteries
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2014'
...
