---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '19663'
abstract:
- lang: eng
text: The centrosome is a microtubule orchestrator, nucleating and anchoring microtubules
that grow radially and exert forces on cargos. At the same time, mechanical stresses
from the microenvironment and cellular shape changes compress and bend microtubules.
Yet, centrosomes are membraneless organelles, raising the question of how centrosomes
withstand mechanical forces. Here, we discover that centrosomes can deform and
even fracture. We reveal that centrosomes experience deformations during navigational
pathfinding within motile cells. Coherence of the centrosome is maintained by
Dyrk3 and cNAP1, preventing fracturing by forces. While cells can compensate for
the depletion of centriolar-based centrosomes, the fracturing of centrosomes impedes
cellular function by generating coexisting microtubule organizing centers that
compete during path navigation and thereby cause cellular entanglement in the
microenvironment. Our findings show that cells actively maintain the integrity
of the centrosome to withstand mechanical forces. These results suggest that centrosome
stability preservation is fundamental, given that almost all cells in multicellular
organisms experience forces.
acknowledgement: "We thank L. Pelkmans and D. Dormann for providing Dyrk3-EGFP plasmids;
M. Heuzé for providing a RFP-Pericentrin plasmid; T. Balla for providing a PH-Akt-GFP
plasmid; E. Snaar-Jagalska for providing a pLenti-V6.3 Ultra-Chili plasmid; T. Tang
for providing CEP120 a plasmid; D. Trono for providing pMD2.G and psSPAX2 plasmids;
M. Sixt for providing EB3-mCherry and EMTB-mCherry plasmids as well as 3T3 fibroblasts,
Lifeact-GFP Hoxb8 cells, and LX293 cells; M. Duggan for RNA isolation from migrating
DCs; M. Schuster from the Biomedical Sequencing Facility at CeMM; J. Schwarz for
providing Jurkat T cells; M. Götz for initial transcriptome analysis; M. Götz and
F. Merino for discussion and sharing reagents; F. Gärtner for discussions and support;
M. Benjamin Braun for critical reading of the manuscript; and the Core Facility
Bioimaging, the Core Facility Flow Cytometry, and the Animal Core Facility of the
Biomedical Center (BMC) for excellent support.\r\nThis work was supported by Peter
Hans Hofschneider Professorship of the Stiftung Experimentelle Biomedizin (J.R.);
German Research Foundation grant “CRC914, project A12” (J.R); German Research Foundation
grant “SPP2332, project 492014049” (J.R.); LMU Institutional Strategy LMU-Excellent
within the framework of the German Excellence Initiative (J.R.); Medical & Clinician
Scientist Program (MCSP) LMU Munich (J.K.); Deutsche Forschungsgemeinschaft (DFG;
German Research Foundation) under Germany’s Excellence Strategy – EXC2151 – 390873048
(D.B.); Deutsche Forschungsgemeinschaft (DFG; German Research Foundation) Grossgeräteantrag
457838313 and under Germany’s Excellence Strategy – EXC 2151 – 390873048 (E.K.);
Ministry of Innovation, Science and Research of North-Rhine-Westphalia (fellowship
AZ: 421-8.03.03.02-137069) (E.K.); TRA Life and Health (University of Bonn) as part
of the Excellence Strategy of the federal and state governments (E.K.); and CZI
grant DAF2020-225401 and grant (DOI https://doi.org/10.37921/120055ratwvi) from
the Chan Zuckerberg Initiative DAF (R.H.)."
article_number: eadx4047
article_processing_charge: Yes
article_type: original
author:
- first_name: Madeleine T.
full_name: Schmitt, Madeleine T.
last_name: Schmitt
- first_name: Janina
full_name: Kroll, Janina
last_name: Kroll
- first_name: Mauricio J.A.
full_name: Ruiz-Fernandez, Mauricio J.A.
last_name: Ruiz-Fernandez
- first_name: Robert
full_name: Hauschild, Robert
id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
last_name: Hauschild
orcid: 0000-0001-9843-3522
- first_name: Shaunak
full_name: Ghosh, Shaunak
last_name: Ghosh
- first_name: Petra
full_name: Kameritsch, Petra
last_name: Kameritsch
- first_name: Jack
full_name: Merrin, Jack
id: 4515C308-F248-11E8-B48F-1D18A9856A87
last_name: Merrin
orcid: 0000-0001-5145-4609
- first_name: Johanna
full_name: Schmid, Johanna
last_name: Schmid
- first_name: Kasia
full_name: Stefanowski, Kasia
last_name: Stefanowski
- first_name: Andreas W.
full_name: Thomae, Andreas W.
last_name: Thomae
- first_name: Jingyuan
full_name: Cheng, Jingyuan
last_name: Cheng
- first_name: Gamze Naz
full_name: Öztan, Gamze Naz
last_name: Öztan
- first_name: Peter
full_name: Konopka, Peter
last_name: Konopka
- first_name: Germán Camargo
full_name: Ortega, Germán Camargo
last_name: Ortega
- first_name: Thomas
full_name: Penz, Thomas
last_name: Penz
- first_name: Luisa
full_name: Bach, Luisa
last_name: Bach
- first_name: Dirk
full_name: Baumjohann, Dirk
last_name: Baumjohann
- first_name: Christoph
full_name: Bock, Christoph
last_name: Bock
- first_name: Tobias
full_name: Straub, Tobias
last_name: Straub
- first_name: Felix
full_name: Meissner, Felix
last_name: Meissner
- first_name: Eva
full_name: Kiermaier, Eva
id: 3EB04B78-F248-11E8-B48F-1D18A9856A87
last_name: Kiermaier
orcid: 0000-0001-6165-5738
- first_name: Jörg
full_name: Renkawitz, Jörg
id: 3F0587C8-F248-11E8-B48F-1D18A9856A87
last_name: Renkawitz
orcid: 0000-0003-2856-3369
citation:
ama: Schmitt MT, Kroll J, Ruiz-Fernandez MJA, et al. Protecting centrosomes from
fracturing enables efficient cell navigation. Science Advances. 2025;11(17).
doi:10.1126/sciadv.adx4047
apa: Schmitt, M. T., Kroll, J., Ruiz-Fernandez, M. J. A., Hauschild, R., Ghosh,
S., Kameritsch, P., … Renkawitz, J. (2025). Protecting centrosomes from fracturing
enables efficient cell navigation. Science Advances. AAAS. https://doi.org/10.1126/sciadv.adx4047
chicago: Schmitt, Madeleine T., Janina Kroll, Mauricio J.A. Ruiz-Fernandez, Robert
Hauschild, Shaunak Ghosh, Petra Kameritsch, Jack Merrin, et al. “Protecting Centrosomes
from Fracturing Enables Efficient Cell Navigation.” Science Advances. AAAS,
2025. https://doi.org/10.1126/sciadv.adx4047.
ieee: M. T. Schmitt et al., “Protecting centrosomes from fracturing enables
efficient cell navigation,” Science Advances, vol. 11, no. 17. AAAS, 2025.
ista: Schmitt MT, Kroll J, Ruiz-Fernandez MJA, Hauschild R, Ghosh S, Kameritsch
P, Merrin J, Schmid J, Stefanowski K, Thomae AW, Cheng J, Öztan GN, Konopka P,
Ortega GC, Penz T, Bach L, Baumjohann D, Bock C, Straub T, Meissner F, Kiermaier
E, Renkawitz J. 2025. Protecting centrosomes from fracturing enables efficient
cell navigation. Science Advances. 11(17), eadx4047.
mla: Schmitt, Madeleine T., et al. “Protecting Centrosomes from Fracturing Enables
Efficient Cell Navigation.” Science Advances, vol. 11, no. 17, eadx4047,
AAAS, 2025, doi:10.1126/sciadv.adx4047.
short: M.T. Schmitt, J. Kroll, M.J.A. Ruiz-Fernandez, R. Hauschild, S. Ghosh, P.
Kameritsch, J. Merrin, J. Schmid, K. Stefanowski, A.W. Thomae, J. Cheng, G.N.
Öztan, P. Konopka, G.C. Ortega, T. Penz, L. Bach, D. Baumjohann, C. Bock, T. Straub,
F. Meissner, E. Kiermaier, J. Renkawitz, Science Advances 11 (2025).
date_created: 2025-05-11T22:02:38Z
date_published: 2025-04-25T00:00:00Z
date_updated: 2025-09-30T12:26:21Z
day: '25'
ddc:
- '570'
department:
- _id: Bio
- _id: NanoFab
doi: 10.1126/sciadv.adx4047
external_id:
isi:
- '001476113400016'
pmid:
- '40279414'
file:
- access_level: open_access
checksum: e8ba22922fa5b23ccfcce8865f57226c
content_type: application/pdf
creator: dernst
date_created: 2025-05-12T07:46:10Z
date_updated: 2025-05-12T07:46:10Z
file_id: '19679'
file_name: 2025_ScienceAdvance_Schmitt.pdf
file_size: 2707050
relation: main_file
success: 1
file_date_updated: 2025-05-12T07:46:10Z
fulldoi: https://doi.org/10.1126/sciadv.adx4047
has_accepted_license: '1'
intvolume: ' 11'
isi: 1
issue: '17'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: c08e9ad1-5a5b-11eb-8a69-9d1cf3b07473
grant_number: CZI01
name: Tools for automation and feedback microscopy
publication: Science Advances
publication_identifier:
eissn:
- 2375-2548
publication_status: published
publisher: AAAS
quality_controlled: '1'
scopus_import: '1'
status: public
title: Protecting centrosomes from fracturing enables efficient cell navigation
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 11
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '19664'
abstract:
- lang: eng
text: Persistent revivals recently observed in Rydberg atom simulators have challenged
our understanding of thermalization and attracted much interest to the concept
of quantum many-body scars (QMBSs). QMBSs are non-thermal highly excited eigenstates
that coexist with typical eigenstates in the spectrum of many-body Hamiltonians,
and have since been reported in multiple theoretical models, including the so-called
PXP model, approximately realized by Rydberg simulators. At the same time, questions
of how common QMBSs are and in what models they are physically realized remain
open. In this Letter, we demonstrate that QMBSs exist in a broader family of models
that includes and generalizes PXP to longer-range constraints and states with
different periodicity. We show that in each model, multiple QMBS families can
be found. Each of them relies on a different approximate algebra, leading to oscillatory
dynamics in all cases. However, in contrast to the PXP model, their observation
requires launching dynamics from weakly entangled initial states rather than from
a product state. QMBSs reported here may be experimentally probed using Rydberg
atom simulator in the regime of longer-range Rydberg blockades.
acknowledgement: The authors are grateful to Zlatko Papić, Dolev Bluvstein, Nishad
Maskara, Marcello Dalmonte, Thomas Iadecola, and Johannes Feldmeier for insightful
discussions. A. K., M. L., and M. S. acknowledge support by the European Research
Council under the European Union’s Horizon 2020 research and innovation program
(Grant Agreement No. 850899). J.-Y. D. acknowledges funding from the European Union’s
Horizon 2020 research and innovation program under the Marie Skłodowska-Curie Grant
Agreement No. 101034413.
article_number: '160401'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Aron
full_name: Kerschbaumer, Aron
id: ade85a9c-3200-11ee-973b-91c1eb240410
last_name: Kerschbaumer
orcid: 0009-0002-2370-8661
- first_name: Marko
full_name: Ljubotina, Marko
id: F75EE9BE-5C90-11EA-905D-16643DDC885E
last_name: Ljubotina
orcid: 0000-0003-0038-7068
- first_name: Maksym
full_name: Serbyn, Maksym
id: 47809E7E-F248-11E8-B48F-1D18A9856A87
last_name: Serbyn
orcid: 0000-0002-2399-5827
- first_name: Jean-Yves Marc
full_name: Desaules, Jean-Yves Marc
id: 6c292945-a610-11ed-9eec-c3be1ad62a80
last_name: Desaules
orcid: 0000-0002-3749-6375
citation:
ama: Kerschbaumer A, Ljubotina M, Serbyn M, Desaules J-YM. Quantum many-body scars
beyond the PXP model in Rydberg simulators. Physical Review Letters. 2025;134(16).
doi:10.1103/PhysRevLett.134.160401
apa: Kerschbaumer, A., Ljubotina, M., Serbyn, M., & Desaules, J.-Y. M. (2025).
Quantum many-body scars beyond the PXP model in Rydberg simulators. Physical
Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.134.160401
chicago: Kerschbaumer, Aron, Marko Ljubotina, Maksym Serbyn, and Jean-Yves Marc
Desaules. “Quantum Many-Body Scars beyond the PXP Model in Rydberg Simulators.”
Physical Review Letters. American Physical Society, 2025. https://doi.org/10.1103/PhysRevLett.134.160401.
ieee: A. Kerschbaumer, M. Ljubotina, M. Serbyn, and J.-Y. M. Desaules, “Quantum
many-body scars beyond the PXP model in Rydberg simulators,” Physical Review
Letters, vol. 134, no. 16. American Physical Society, 2025.
ista: Kerschbaumer A, Ljubotina M, Serbyn M, Desaules J-YM. 2025. Quantum many-body
scars beyond the PXP model in Rydberg simulators. Physical Review Letters. 134(16),
160401.
mla: Kerschbaumer, Aron, et al. “Quantum Many-Body Scars beyond the PXP Model in
Rydberg Simulators.” Physical Review Letters, vol. 134, no. 16, 160401,
American Physical Society, 2025, doi:10.1103/PhysRevLett.134.160401.
short: A. Kerschbaumer, M. Ljubotina, M. Serbyn, J.-Y.M. Desaules, Physical Review
Letters 134 (2025).
date_created: 2025-05-11T22:02:38Z
date_published: 2025-04-22T00:00:00Z
date_updated: 2026-06-10T08:40:51Z
day: '22'
ddc:
- '530'
department:
- _id: MaSe
doi: 10.1103/PhysRevLett.134.160401
ec_funded: 1
external_id:
arxiv:
- '2410.18913'
isi:
- '001480669300011'
pmid:
- '40344113'
file:
- access_level: open_access
checksum: b7f581291e20f152d0efc64727314ca2
content_type: application/pdf
creator: dernst
date_created: 2025-05-12T07:33:38Z
date_updated: 2025-05-12T07:33:38Z
file_id: '19677'
file_name: 2025_PhysReviewLetters_Kerschbaumer.pdf
file_size: 1028993
relation: main_file
success: 1
file_date_updated: 2025-05-12T07:33:38Z
fulldoi: https://doi.org/10.1103/PhysRevLett.134.160401
has_accepted_license: '1'
intvolume: ' 134'
isi: 1
issue: '16'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 23841C26-32DE-11EA-91FC-C7463DDC885E
call_identifier: H2020
grant_number: '850899'
name: 'Non-Ergodic Quantum Matter: Universality, Dynamics and Control'
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
call_identifier: H2020
grant_number: '101034413'
name: 'IST-BRIDGE: International postdoctoral program'
publication: Physical Review Letters
publication_identifier:
eissn:
- 1079-7114
issn:
- 0031-9007
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
related_material:
link:
- description: News on ISTA website
relation: press_release
url: https://ista.ac.at/en/news/a-sky-full-of-quantum-scars/
record:
- id: '19623'
relation: research_data
status: public
scopus_import: '1'
status: public
title: Quantum many-body scars beyond the PXP model in Rydberg simulators
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 134
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '19665'
abstract:
- lang: eng
text: As AI-based decision-makers increasingly influence human lives, it is a growing
concern that their decisions may be unfair or biased with respect to people's
protected attributes, such as gender and race. Most existing bias prevention measures
provide probabilistic fairness guarantees in the long run, and it is possible
that the decisions are biased on any decision sequence of fixed length. We introduce
*fairness shielding*, where a symbolic decision-maker---the fairness shield---continuously
monitors the sequence of decisions of another deployed black-box decision-maker,
and makes interventions so that a given fairness criterion is met while the total
intervention costs are minimized. We present four different algorithms for computing
fairness shields, among which one guarantees fairness over fixed horizons, and
three guarantee fairness periodically after fixed intervals. Given a distribution
over future decisions and their intervention costs, our algorithms solve different
instances of bounded-horizon optimal control problems with different levels of
computational costs and optimality guarantees. Our empirical evaluation demonstrates
the effectiveness of these shields in ensuring fairness while maintaining cost
efficiency across various scenarios.
acknowledgement: 'This work is partly supported by the European Research Council under
Grant No.: ERC-2020-AdG 101020093. It is also partially supported by the State Government
of Styria, Austria – Department Zukunftsfonds Steiermark.'
article_processing_charge: No
arxiv: 1
author:
- first_name: Filip
full_name: Cano Cordoba, Filip
id: 708cad98-e86a-11ef-8098-bdae2d7c6af1
last_name: Cano Cordoba
orcid: 0000-0002-0783-904X
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000-0002-2985-7724
- first_name: Bettina
full_name: Könighofer, Bettina
last_name: Könighofer
- first_name: Konstantin
full_name: Kueffner, Konstantin
id: 8121a2d0-dc85-11ea-9058-af578f3b4515
last_name: Kueffner
orcid: 0000-0001-8974-2542
- first_name: Kaushik
full_name: Mallik, Kaushik
id: 0834ff3c-6d72-11ec-94e0-b5b0a4fb8598
last_name: Mallik
orcid: 0000-0001-9864-7475
citation:
ama: 'Cano Cordoba F, Henzinger TA, Könighofer B, Kueffner K, Mallik K. Fairness
shields: Safeguarding against biased decision makers. In: Proceedings of the
39th AAAI Conference on Artificial Intelligence. Vol 39. Association for the
Advancement of Artificial Intelligence; 2025:15659-15668. doi:10.1609/aaai.v39i15.33719'
apa: 'Cano Cordoba, F., Henzinger, T. A., Könighofer, B., Kueffner, K., & Mallik,
K. (2025). Fairness shields: Safeguarding against biased decision makers. In Proceedings
of the 39th AAAI Conference on Artificial Intelligence (Vol. 39, pp. 15659–15668).
Philadelphia, PA, United States: Association for the Advancement of Artificial
Intelligence. https://doi.org/10.1609/aaai.v39i15.33719'
chicago: 'Cano Cordoba, Filip, Thomas A Henzinger, Bettina Könighofer, Konstantin
Kueffner, and Kaushik Mallik. “Fairness Shields: Safeguarding against Biased Decision
Makers.” In Proceedings of the 39th AAAI Conference on Artificial Intelligence,
39:15659–68. Association for the Advancement of Artificial Intelligence, 2025.
https://doi.org/10.1609/aaai.v39i15.33719.'
ieee: 'F. Cano Cordoba, T. A. Henzinger, B. Könighofer, K. Kueffner, and K. Mallik,
“Fairness shields: Safeguarding against biased decision makers,” in Proceedings
of the 39th AAAI Conference on Artificial Intelligence, Philadelphia, PA,
United States, 2025, vol. 39, no. 15, pp. 15659–15668.'
ista: 'Cano Cordoba F, Henzinger TA, Könighofer B, Kueffner K, Mallik K. 2025. Fairness
shields: Safeguarding against biased decision makers. Proceedings of the 39th
AAAI Conference on Artificial Intelligence. AAAI: Conference on Artificial Intelligence
vol. 39, 15659–15668.'
mla: 'Cano Cordoba, Filip, et al. “Fairness Shields: Safeguarding against Biased
Decision Makers.” Proceedings of the 39th AAAI Conference on Artificial Intelligence,
vol. 39, no. 15, Association for the Advancement of Artificial Intelligence, 2025,
pp. 15659–68, doi:10.1609/aaai.v39i15.33719.'
short: F. Cano Cordoba, T.A. Henzinger, B. Könighofer, K. Kueffner, K. Mallik, in:,
Proceedings of the 39th AAAI Conference on Artificial Intelligence, Association
for the Advancement of Artificial Intelligence, 2025, pp. 15659–15668.
conference:
end_date: 2025-03-04
location: Philadelphia, PA, United States
name: 'AAAI: Conference on Artificial Intelligence'
start_date: 2025-02-25
corr_author: '1'
date_created: 2025-05-11T22:02:39Z
date_published: 2025-04-11T00:00:00Z
date_updated: 2026-02-16T12:24:30Z
day: '11'
department:
- _id: ToHe
doi: 10.1609/aaai.v39i15.33719
ec_funded: 1
external_id:
arxiv:
- '2412.11994'
fulldoi: https://doi.org/10.1609/aaai.v39i15.33719
intvolume: ' 39'
issue: '15'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2412.11994
month: '04'
oa: 1
oa_version: Preprint
page: 15659-15668
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
call_identifier: H2020
grant_number: '101020093'
name: Vigilant Algorithmic Monitoring of Software
publication: Proceedings of the 39th AAAI Conference on Artificial Intelligence
publication_identifier:
eissn:
- 2374-3468
issn:
- 2159-5399
publication_status: published
publisher: Association for the Advancement of Artificial Intelligence
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Fairness shields: Safeguarding against biased decision makers'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 39
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '19666'
abstract:
- lang: eng
text: Markov decision processes (MDP) are a well-established model for sequential
decision-making in the presence of probabilities. In *robust* MDP (RMDP), every
action is associated with an *uncertainty set* of probability distributions, modelling
that transition probabilities are not known precisely. Based on the known theoretical
connection to stochastic games, we provide a framework for solving RMDPs that
is generic, reliable, and efficient. It is *generic* both with respect to the
model, allowing for a wide range of uncertainty sets, including but not limited
to intervals, L1- or L2-balls, and polytopes; and with respect to the objective,
including long-run average reward, undiscounted total reward, and stochastic shortest
path. It is *reliable*, as our approach not only converges in the limit, but provides
precision guarantees at any time during the computation. It is *efficient* because
-- in contrast to state-of-the-art approaches -- it avoids explicitly constructing
the underlying stochastic game. Consequently, our prototype implementation outperforms
existing tools by several orders of magnitude and can solve RMDPs with a million
states in under a minute.
acknowledgement: "This project has received funding from the European Union’s Horizon
2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement
No. 101034413,\r\nthe ERC CoG 863818 (ForM-SMArt), and the DFG through the Cluster
of Excellence EXC 2050/1 (CeTI, project ID 390696704, as part of Germany’s Excellence
Strategy) and the TRR 248 (see https://perspicuous-computing.science, project ID
389792660)."
article_processing_charge: No
arxiv: 1
author:
- first_name: Tobias
full_name: Meggendorfer, Tobias
id: b21b0c15-30a2-11eb-80dc-f13ca25802e1
last_name: Meggendorfer
orcid: 0000-0002-1712-2165
- first_name: Maximilian
full_name: Weininger, Maximilian
id: 02ab0197-cc70-11ed-ab61-918e71f56881
last_name: Weininger
orcid: 0000-0002-0163-2152
- first_name: Patrick
full_name: Wienhöft, Patrick
last_name: Wienhöft
citation:
ama: 'Meggendorfer T, Weininger M, Wienhöft P. Solving robust Markov decision processes:
Generic, reliable, efficient. In: Proceedings of the 39th AAAI Conference on
Artificial Intelligence. Vol 39. Association for the Advancement of Artificial
Intelligence; 2025:26631-26641. doi:10.1609/aaai.v39i25.34865'
apa: 'Meggendorfer, T., Weininger, M., & Wienhöft, P. (2025). Solving robust
Markov decision processes: Generic, reliable, efficient. In Proceedings of
the 39th AAAI Conference on Artificial Intelligence (Vol. 39, pp. 26631–26641).
Philadelphia, PA, United States: Association for the Advancement of Artificial
Intelligence. https://doi.org/10.1609/aaai.v39i25.34865'
chicago: 'Meggendorfer, Tobias, Maximilian Weininger, and Patrick Wienhöft. “Solving
Robust Markov Decision Processes: Generic, Reliable, Efficient.” In Proceedings
of the 39th AAAI Conference on Artificial Intelligence, 39:26631–41. Association
for the Advancement of Artificial Intelligence, 2025. https://doi.org/10.1609/aaai.v39i25.34865.'
ieee: 'T. Meggendorfer, M. Weininger, and P. Wienhöft, “Solving robust Markov decision
processes: Generic, reliable, efficient,” in Proceedings of the 39th AAAI Conference
on Artificial Intelligence, Philadelphia, PA, United States, 2025, vol. 39,
no. 25, pp. 26631–26641.'
ista: 'Meggendorfer T, Weininger M, Wienhöft P. 2025. Solving robust Markov decision
processes: Generic, reliable, efficient. Proceedings of the 39th AAAI Conference
on Artificial Intelligence. AAAI: Conference on Artificial Intelligence vol. 39,
26631–26641.'
mla: 'Meggendorfer, Tobias, et al. “Solving Robust Markov Decision Processes: Generic,
Reliable, Efficient.” Proceedings of the 39th AAAI Conference on Artificial
Intelligence, vol. 39, no. 25, Association for the Advancement of Artificial
Intelligence, 2025, pp. 26631–41, doi:10.1609/aaai.v39i25.34865.'
short: T. Meggendorfer, M. Weininger, P. Wienhöft, in:, Proceedings of the 39th
AAAI Conference on Artificial Intelligence, Association for the Advancement of
Artificial Intelligence, 2025, pp. 26631–26641.
conference:
end_date: 2025-03-04
location: Philadelphia, PA, United States
name: 'AAAI: Conference on Artificial Intelligence'
start_date: 2025-02-25
date_created: 2025-05-11T22:02:39Z
date_published: 2025-04-11T00:00:00Z
date_updated: 2026-02-16T12:25:05Z
day: '11'
department:
- _id: KrCh
doi: 10.1609/aaai.v39i25.34865
ec_funded: 1
external_id:
arxiv:
- '2412.10185'
fulldoi: https://doi.org/10.1609/aaai.v39i25.34865
intvolume: ' 39'
issue: '25'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2412.10185
month: '04'
oa: 1
oa_version: Preprint
page: 26631-26641
project:
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
call_identifier: H2020
grant_number: '863818'
name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
publication: Proceedings of the 39th AAAI Conference on Artificial Intelligence
publication_identifier:
eissn:
- 2374-3468
issn:
- 2159-5399
publication_status: published
publisher: Association for the Advancement of Artificial Intelligence
quality_controlled: '1'
related_material:
link:
- relation: software
url: https://doi.org/10.5281/zenodo.14385449
scopus_import: '1'
status: public
title: 'Solving robust Markov decision processes: Generic, reliable, efficient'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 39
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '19668'
abstract:
- lang: eng
text: Learning-based methods provide a promising approach to solving highly non-linear
control tasks that are often challenging for classical control methods. To ensure
the satisfaction of a safety property, learning-based methods jointly learn a
control policy together with a certificate function for the property. Popular
examples include barrier functions for safety and Lyapunov functions for asymptotic
stability. While there has been significant progress on learning-based control
with certificate functions in the white-box setting, where the correctness of
the certificate function can be formally verified, there has been little work
on ensuring their reliability in the black-box setting where the system dynamics
are unknown. In this work, we consider the problems of certifying and repairing
neural network control policies and certificate functions in the black-box setting.
We propose a novel framework that utilizes runtime monitoring to detect system
behaviors that violate the property of interest under some initially trained neural
network policy and certificate. These violating behaviors are used to extract
new training data, that is used to re-train the neural network policy and the
certificate function and to ultimately repair them. We demonstrate the effectiveness
of our approach empirically by using it to repair and to boost the safety rate
of neural network policies learned by a state-of-the-art method for learning-based
control on two autonomous system control tasks.
acknowledgement: This work was supported in part by the ERC project ERC2020-AdG 101020093
article_processing_charge: No
arxiv: 1
author:
- first_name: Zhengqi
full_name: Yu, Zhengqi
id: 20aa2ae8-f2f1-11ed-bbfa-8205053f1342
last_name: Yu
- first_name: Dorde
full_name: Zikelic, Dorde
id: 294AA7A6-F248-11E8-B48F-1D18A9856A87
last_name: Zikelic
orcid: 0000-0002-4681-1699
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000-0002-2985-7724
citation:
ama: 'Yu E, Zikelic D, Henzinger TA. Neural control and certificate repair via runtime
monitoring. In: Proceedings of the 39th AAAI Conference on Artificial Intelligence.
Vol 39. Association for the Advancement of Artificial Intelligence; 2025:26409-26417.
doi:10.1609/aaai.v39i25.34840'
apa: 'Yu, E., Zikelic, D., & Henzinger, T. A. (2025). Neural control and certificate
repair via runtime monitoring. In Proceedings of the 39th AAAI Conference on
Artificial Intelligence (Vol. 39, pp. 26409–26417). Philadelphia, PA, United
States: Association for the Advancement of Artificial Intelligence. https://doi.org/10.1609/aaai.v39i25.34840'
chicago: Yu, Emily, Dorde Zikelic, and Thomas A Henzinger. “Neural Control and Certificate
Repair via Runtime Monitoring.” In Proceedings of the 39th AAAI Conference
on Artificial Intelligence, 39:26409–17. Association for the Advancement of
Artificial Intelligence, 2025. https://doi.org/10.1609/aaai.v39i25.34840.
ieee: E. Yu, D. Zikelic, and T. A. Henzinger, “Neural control and certificate repair
via runtime monitoring,” in Proceedings of the 39th AAAI Conference on Artificial
Intelligence, Philadelphia, PA, United States, 2025, vol. 39, no. 25, pp.
26409–26417.
ista: 'Yu E, Zikelic D, Henzinger TA. 2025. Neural control and certificate repair
via runtime monitoring. Proceedings of the 39th AAAI Conference on Artificial
Intelligence. AAAI: Conference on Artificial Intelligence vol. 39, 26409–26417.'
mla: Yu, Emily, et al. “Neural Control and Certificate Repair via Runtime Monitoring.”
Proceedings of the 39th AAAI Conference on Artificial Intelligence, vol.
39, no. 25, Association for the Advancement of Artificial Intelligence, 2025,
pp. 26409–17, doi:10.1609/aaai.v39i25.34840.
short: E. Yu, D. Zikelic, T.A. Henzinger, in:, Proceedings of the 39th AAAI Conference
on Artificial Intelligence, Association for the Advancement of Artificial Intelligence,
2025, pp. 26409–26417.
conference:
end_date: 2025-03-04
location: Philadelphia, PA, United States
name: 'AAAI: Conference on Artificial Intelligence'
start_date: 2025-02-25
corr_author: '1'
date_created: 2025-05-11T22:02:40Z
date_published: 2025-04-11T00:00:00Z
date_updated: 2025-05-12T09:49:25Z
day: '11'
department:
- _id: ToHe
doi: 10.1609/aaai.v39i25.34840
ec_funded: 1
external_id:
arxiv:
- '2412.12996'
fulldoi: https://doi.org/10.1609/aaai.v39i25.34840
intvolume: ' 39'
issue: '25'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2412.12996
month: '04'
oa: 1
oa_version: Preprint
page: 26409-26417
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
call_identifier: H2020
grant_number: '101020093'
name: Vigilant Algorithmic Monitoring of Software
publication: Proceedings of the 39th AAAI Conference on Artificial Intelligence
publication_identifier:
eissn:
- 2374-3468
issn:
- 2159-5399
publication_status: published
publisher: Association for the Advancement of Artificial Intelligence
quality_controlled: '1'
scopus_import: '1'
status: public
title: Neural control and certificate repair via runtime monitoring
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 39
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '19670'
abstract:
- lang: eng
text: “Pasta alla Cacio e pepe” is a traditional Italian dish made with pasta, pecorino
cheese, and pepper. Despite its simple ingredient list, achieving the perfect
texture and creaminess of the sauce can be challenging. In this study, we systematically
explore the phase behavior of Cacio e pepe sauce, focusing on its stability at
increasing temperatures for various proportions of cheese, water, and starch.
We identify starch concentration as the key factor influencing sauce stability,
with direct implications for practical cooking. Specifically, we delineate a regime
where starch concentrations below 1% (relative to cheese mass) lead to the formation
of system-wide clumps, a condition determining what we term the “Mozzarella Phase”
and corresponding to an unpleasant and separated sauce. Additionally, we examine
the impact of cheese concentration relative to water at a fixed starch level,
observing a lower critical solution temperature that we theoretically rationalized
by means of a minimal effective free-energy model. We further analyze the effect
of a less traditional stabilizer, trisodium citrate, and observe a sharp transition
from the Mozzarella Phase to a completely smooth and stable sauce, in contrast
to starch-stabilized mixtures, where the transition is more gradual. Finally,
we present a scientifically optimized recipe based on our findings, enabling a
consistently flawless execution of this classic dish.
acknowledgement: he authors thank Frank Jülicher, for supporting the initiative and
stimulating discussions. We thank Tetsuya Spippayashi for enlightening clarifications
on the historical origins of Cacio e pepe and Giuseppe Ricchitelli for helping with
the construction of the experimental apparatus. We further thank Martina Gaiba,
Alessandro Gaiba, John D. Treado, Virginia Lepore, Eleonora Nanu, Julia Kirsch,
Lara Koehler, Burak Budanur, Irina Pi-Jaumà, Elizabeth Brückner, M.J. Franco Oñate,
Giorgio Nicoletti, and Marco Salvalaglio for their support and for eating up the
sample leftovers. Finally, we thank Simone Frau for taking the photograph in Fig.
1(a).
article_number: '044122'
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: G.
full_name: Bartolucci, G.
last_name: Bartolucci
- first_name: D. M.
full_name: Busiello, D. M.
last_name: Busiello
- first_name: M.
full_name: Ciarchi, M.
last_name: Ciarchi
- first_name: A.
full_name: Corticelli, A.
last_name: Corticelli
- first_name: I.
full_name: Di Terlizzi, I.
last_name: Di Terlizzi
- first_name: Fabrizio
full_name: Olmeda, Fabrizio
id: 69dbf5fb-8a76-11ed-866b-fb486d8b5689
last_name: Olmeda
- first_name: D.
full_name: Revignas, D.
last_name: Revignas
- first_name: V. M.
full_name: Schimmenti, V. M.
last_name: Schimmenti
citation:
ama: Bartolucci G, Busiello DM, Ciarchi M, et al. Phase behavior of Cacio e Pepe
sauce. Physics of Fluids. 2025;37(4). doi:10.1063/5.0255841
apa: Bartolucci, G., Busiello, D. M., Ciarchi, M., Corticelli, A., Di Terlizzi,
I., Olmeda, F., … Schimmenti, V. M. (2025). Phase behavior of Cacio e Pepe sauce.
Physics of Fluids. AIP Publishing. https://doi.org/10.1063/5.0255841
chicago: Bartolucci, G., D. M. Busiello, M. Ciarchi, A. Corticelli, I. Di Terlizzi,
Fabrizio Olmeda, D. Revignas, and V. M. Schimmenti. “Phase Behavior of Cacio e
Pepe Sauce.” Physics of Fluids. AIP Publishing, 2025. https://doi.org/10.1063/5.0255841.
ieee: G. Bartolucci et al., “Phase behavior of Cacio e Pepe sauce,” Physics
of Fluids, vol. 37, no. 4. AIP Publishing, 2025.
ista: Bartolucci G, Busiello DM, Ciarchi M, Corticelli A, Di Terlizzi I, Olmeda
F, Revignas D, Schimmenti VM. 2025. Phase behavior of Cacio e Pepe sauce. Physics
of Fluids. 37(4), 044122.
mla: Bartolucci, G., et al. “Phase Behavior of Cacio e Pepe Sauce.” Physics of
Fluids, vol. 37, no. 4, 044122, AIP Publishing, 2025, doi:10.1063/5.0255841.
short: G. Bartolucci, D.M. Busiello, M. Ciarchi, A. Corticelli, I. Di Terlizzi,
F. Olmeda, D. Revignas, V.M. Schimmenti, Physics of Fluids 37 (2025).
date_created: 2025-05-11T22:02:40Z
date_published: 2025-04-01T00:00:00Z
date_updated: 2026-04-28T13:24:53Z
day: '01'
ddc:
- '530'
department:
- _id: EdHa
doi: 10.1063/5.0255841
external_id:
arxiv:
- '2501.00536'
isi:
- '001482986200001'
file:
- access_level: open_access
checksum: 242d05898aa0a2348b9c108747adb5ce
content_type: application/pdf
creator: dernst
date_created: 2025-05-12T09:31:22Z
date_updated: 2025-05-12T09:31:22Z
file_id: '19681'
file_name: 2025_PhysicsFluids_Bartolucci.pdf
file_size: 4926853
relation: main_file
success: 1
file_date_updated: 2025-05-12T09:31:22Z
fulldoi: https://doi.org/10.1063/5.0255841
has_accepted_license: '1'
intvolume: ' 37'
isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
publication: Physics of Fluids
publication_identifier:
eissn:
- 1089-7666
issn:
- 1070-6631
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
related_material:
link:
- description: News on ISTA
relation: press_release
url: https://ista.ac.at/en/news/2025-ig-nobel-prize-for-perfect-pasta-sauce/
scopus_import: '1'
status: public
title: Phase behavior of Cacio e Pepe sauce
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 37
year: '2025'
...
---
OA_type: closed access
_id: '19671'
abstract:
- lang: eng
text: Silvopastoral use in native forests could impact population dynamics of key
tree species, with contrasting effects at different life cycle stages. Prior studies
in South American temperate forests have mainly focused on initial stages, lacking
a comprehensive understanding of the entire life cycle within productive systems.
We assessed the population dynamics of two key species of mixed forests in northern
Patagonia (Austrocedrus chilensis and Nothofagus dombeyi) under two silvopastoral
use intensities (high vs. low), using demographic techniques and population projection
models. Over 3 years, we quantified vital rates (survival, fertility, growth,
reversion and stasis) and used matrix models to calculate deterministic population
growth rates (λ). High-intensity silvopastoral use had predominantly negative
effects on the elements of the projection matrices of A. chilensis, whereas N.
dombeyi exhibited mostly positive or no changes. As a result, projections indicated
slight population decreases for A. chilensis (mostly λ < 1) at high silvopastoral
use levels compared to low levels, while N. dombeyi showed similar projections
(λ ≅ 1) between use levels. Decreased λ for A. chilensis resulted mainly from
lower adult tree survival, while early life stages had limited influence on λ
for these long-lived species. In summary, silvopastoral use affects population
dynamics of key tree species of these mixed forests of northern Patagonia, with
implications for sustainable management. Our findings highlight the importance
of considering the entire life cycle and suggest targeted practices to enhance
A. chilensis populations.
acknowledgement: We would like to express our sincere gratitude to the owners of the
estates, Lisandro and Oscar Lanfré, Roberto Criado and Yayo Tillería, for allowing
us to conduct our research on their properties and for generously sharing their
time and knowledge throughout these years. We are also deeply thankful to our field
assistants, Matías Scotti, Clara Pissolito, Noel Szudruk, Mariano Varela, Ian Mott,
Brisa Guenuleo, Nicolás Bistolfi, Facundo Gómez and Belén Vallerga, who tirelessly
collaborated in the arduous tasks of monitoring and data collection, even in challenging
weather conditions. We are grateful to CONICET for providing the doctoral scholarship
to D. Arpigiani. This study received partial financial support from the Agencia
MINCyT (PICT 2015-1692) and the Universidad Nacional de Río Negro (PI 40-B-478),
Argentina.
article_number: e70058
article_processing_charge: No
article_type: original
author:
- first_name: Daniela
full_name: Arpigiani, Daniela
last_name: Arpigiani
- first_name: Valeria
full_name: Aschero, Valeria
last_name: Aschero
- first_name: Rosina Matilde
full_name: Soler Schaller, Rosina Matilde
id: 9e668447-8c32-11ed-b0c7-8dc2d7b80803
last_name: Soler Schaller
- first_name: Mariano M.
full_name: Amoroso, Mariano M.
last_name: Amoroso
citation:
ama: Arpigiani D, Aschero V, Soler Schaller RM, Amoroso MM. A life-cycle approach
to understand consequences of silvopastoral use on two native tree species of
Northern Patagonia. Austral Ecology. 2025;50(4). doi:10.1111/aec.70058
apa: Arpigiani, D., Aschero, V., Soler Schaller, R. M., & Amoroso, M. M. (2025).
A life-cycle approach to understand consequences of silvopastoral use on two native
tree species of Northern Patagonia. Austral Ecology. Wiley. https://doi.org/10.1111/aec.70058
chicago: Arpigiani, Daniela, Valeria Aschero, Rosina Matilde Soler Schaller, and
Mariano M. Amoroso. “A Life-Cycle Approach to Understand Consequences of Silvopastoral
Use on Two Native Tree Species of Northern Patagonia.” Austral Ecology.
Wiley, 2025. https://doi.org/10.1111/aec.70058.
ieee: D. Arpigiani, V. Aschero, R. M. Soler Schaller, and M. M. Amoroso, “A life-cycle
approach to understand consequences of silvopastoral use on two native tree species
of Northern Patagonia,” Austral Ecology, vol. 50, no. 4. Wiley, 2025.
ista: Arpigiani D, Aschero V, Soler Schaller RM, Amoroso MM. 2025. A life-cycle
approach to understand consequences of silvopastoral use on two native tree species
of Northern Patagonia. Austral Ecology. 50(4), e70058.
mla: Arpigiani, Daniela, et al. “A Life-Cycle Approach to Understand Consequences
of Silvopastoral Use on Two Native Tree Species of Northern Patagonia.” Austral
Ecology, vol. 50, no. 4, e70058, Wiley, 2025, doi:10.1111/aec.70058.
short: D. Arpigiani, V. Aschero, R.M. Soler Schaller, M.M. Amoroso, Austral Ecology
50 (2025).
date_created: 2025-05-11T22:02:41Z
date_published: 2025-04-01T00:00:00Z
date_updated: 2025-09-30T12:31:04Z
day: '01'
department:
- _id: NiBa
doi: 10.1111/aec.70058
external_id:
isi:
- '001476761500001'
fulldoi: https://doi.org/10.1111/aec.70058
intvolume: ' 50'
isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa_version: None
publication: Austral Ecology
publication_identifier:
eissn:
- 1442-9993
issn:
- 1442-9985
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: A life-cycle approach to understand consequences of silvopastoral use on two
native tree species of Northern Patagonia
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 50
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '19672'
abstract:
- lang: eng
text: 'Some of the classical models of tropical cyclone intensification predict
tropical cyclones to intensify up to a steady intensity, which depends on surface
fluxes only, without any relevant role played by convective motions in the troposphere,
typically assumed to have a moist adiabatic lapse rate. Simulations performed
using the non-hydrostatic, high-resolution model System for Atmosphere Modeling
in idealized settings (rotating radiative-convective equilibrium on a doubly periodic
domain) show early intensification consistent with these theoretical expectations,
but different intensity evolution, with the cyclone undergoing an oscillation
in wind speed. This oscillation can be linked to feedbacks between the cyclone
intensity and air buoyancy: convective heating, radiative heating, and mixing
with warm low stratospheric air warm the mid and upper troposphere of the cyclone
stabilizing the air column and thus reducing its intensity. After the intensity
decay phase, mid and upper tropospheric cooling, mostly through cold advection
from the surroundings, cooled by radiation, rebuilds Convective Available Potential
Energy, that peaks just before a new intensification phase. These idealized simulations
thus highlight the potentially important interactions between a tropical cyclone,
its environment and radiation.'
acknowledgement: The authors acknowledge two anonymous reviewers and the editor who
provided insightful remarks and comments that helped to significantly improve the
manuscript. AP and CJM gratefully acknowledges funding from the European Research
Council (ERC) under the European Union's Horizon 2020 research and innovation program
(Project CLUSTER, Grant Agreement No. 805041). Part of this work is an outcome of
the project MIUR—Dipartimenti di Eccellenza 2023–2027. ANM is supported by HPC-TRES
Grant 2023-04.
article_number: e2024MS004613
article_processing_charge: Yes
article_type: original
author:
- first_name: Andrea
full_name: Polesello, Andrea
id: 74c777f4-32da-11ee-b498-874db0835561
last_name: Polesello
- first_name: Giousef Alexandros
full_name: Charinti, Giousef Alexandros
id: 7f7cc04c-074c-11ed-af92-eb16afd85c75
last_name: Charinti
- first_name: Agostino Niyonkuru
full_name: Meroni, Agostino Niyonkuru
last_name: Meroni
- first_name: Caroline J
full_name: Muller, Caroline J
id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
last_name: Muller
orcid: 0000-0001-5836-5350
- first_name: Claudia
full_name: Pasquero, Claudia
last_name: Pasquero
citation:
ama: 'Polesello A, Charinti GA, Meroni AN, Muller CJ, Pasquero C. Intensity oscillations
of tropical cyclones: Surface versus mid and upper tropospheric processes. Journal
of Advances in Modeling Earth Systems. 2025;17(4). doi:10.1029/2024MS004613'
apa: 'Polesello, A., Charinti, G. A., Meroni, A. N., Muller, C. J., & Pasquero,
C. (2025). Intensity oscillations of tropical cyclones: Surface versus mid and
upper tropospheric processes. Journal of Advances in Modeling Earth Systems.
Wiley. https://doi.org/10.1029/2024MS004613'
chicago: 'Polesello, Andrea, Giousef Alexandros Charinti, Agostino Niyonkuru Meroni,
Caroline J Muller, and Claudia Pasquero. “Intensity Oscillations of Tropical Cyclones:
Surface versus Mid and Upper Tropospheric Processes.” Journal of Advances in
Modeling Earth Systems. Wiley, 2025. https://doi.org/10.1029/2024MS004613.'
ieee: 'A. Polesello, G. A. Charinti, A. N. Meroni, C. J. Muller, and C. Pasquero,
“Intensity oscillations of tropical cyclones: Surface versus mid and upper tropospheric
processes,” Journal of Advances in Modeling Earth Systems, vol. 17, no.
4. Wiley, 2025.'
ista: 'Polesello A, Charinti GA, Meroni AN, Muller CJ, Pasquero C. 2025. Intensity
oscillations of tropical cyclones: Surface versus mid and upper tropospheric processes.
Journal of Advances in Modeling Earth Systems. 17(4), e2024MS004613.'
mla: 'Polesello, Andrea, et al. “Intensity Oscillations of Tropical Cyclones: Surface
versus Mid and Upper Tropospheric Processes.” Journal of Advances in Modeling
Earth Systems, vol. 17, no. 4, e2024MS004613, Wiley, 2025, doi:10.1029/2024MS004613.'
short: A. Polesello, G.A. Charinti, A.N. Meroni, C.J. Muller, C. Pasquero, Journal
of Advances in Modeling Earth Systems 17 (2025).
corr_author: '1'
date_created: 2025-05-11T22:02:41Z
date_published: 2025-04-01T00:00:00Z
date_updated: 2025-09-30T12:30:29Z
day: '01'
ddc:
- '550'
department:
- _id: CaMu
doi: 10.1029/2024MS004613
ec_funded: 1
external_id:
isi:
- '001472439600001'
file:
- access_level: open_access
checksum: 2f7c74aceaeea4be1fff4de300791319
content_type: application/pdf
creator: dernst
date_created: 2025-05-12T12:17:08Z
date_updated: 2025-05-12T12:17:08Z
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has_accepted_license: '1'
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isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
project:
- _id: 629205d8-2b32-11ec-9570-e1356ff73576
call_identifier: H2020
grant_number: '805041'
name: Organization of CLoUdS, and implications of Tropical cyclones and for the
Energetics of the tropics, in current and waRming climate
publication: Journal of Advances in Modeling Earth Systems
publication_identifier:
eissn:
- 1942-2466
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Intensity oscillations of tropical cyclones: Surface versus mid and upper
tropospheric processes'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 17
year: '2025'
...
---
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author:
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full_name: Tatman, Benjamin
id: 71cda2f3-e604-11ee-a1df-da10587eda3f
last_name: Tatman
citation:
ama: 'Tatman B. Dataset for “Bumps on the Road: The Way to Clean Relaxation Dispersion
in the Solid State.” 2025. doi:10.15479/AT-ISTA-19696'
apa: 'Tatman, B. (2025). Dataset for “Bumps on the Road: The Way to Clean Relaxation
Dispersion in the Solid State.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT-ISTA-19696'
chicago: 'Tatman, Benjamin. “Dataset for ‘Bumps on the Road: The Way to Clean Relaxation
Dispersion in the Solid State.’” Institute of Science and Technology Austria,
2025. https://doi.org/10.15479/AT-ISTA-19696.'
ieee: 'B. Tatman, “Dataset for ‘Bumps on the Road: The Way to Clean Relaxation Dispersion
in the Solid State.’” Institute of Science and Technology Austria, 2025.'
ista: 'Tatman B. 2025. Dataset for ‘Bumps on the Road: The Way to Clean Relaxation
Dispersion in the Solid State’, Institute of Science and Technology Austria, 10.15479/AT-ISTA-19696.'
mla: 'Tatman, Benjamin. Dataset for “Bumps on the Road: The Way to Clean Relaxation
Dispersion in the Solid State.” Institute of Science and Technology Austria,
2025, doi:10.15479/AT-ISTA-19696.'
short: B. Tatman, (2025).
contributor:
- contributor_type: project_leader
first_name: Paul
id: 7B541462-FAF6-11E9-A490-E8DFE5697425
last_name: Schanda
orcid: 0000-0002-9350-7606
- contributor_type: researcher
first_name: Vidhyalakshmi
last_name: Sridharan
- contributor_type: researcher
first_name: Motilal
last_name: Uttarkabat
- contributor_type: researcher
first_name: Christopher
last_name: Jaroniec
- contributor_type: researcher
first_name: Matthias
last_name: Ernst
- contributor_type: researcher
first_name: Petra
id: c316e53f-b965-11eb-b128-bb26acc59c00
last_name: Rovo
orcid: 0000-0001-8729-7326
corr_author: '1'
date_created: 2025-05-14T10:46:07Z
date_published: 2025-07-31T00:00:00Z
date_updated: 2026-06-10T08:33:41Z
day: '31'
department:
- _id: PaSc
doi: 10.15479/AT-ISTA-19696
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creator: btatman
date_created: 2025-07-31T08:14:21Z
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file_id: '20095'
file_name: readme.txt
file_size: 3514
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success: 1
file_date_updated: 2025-07-31T08:14:40Z
fulldoi: https://doi.org/10.15479/AT-ISTA-19696
has_accepted_license: '1'
license: https://creativecommons.org/licenses/by-nc-sa/4.0/
month: '07'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
related_material:
link:
- description: Paper to which the dataset corresponds.
relation: research_paper
url: http.//doi.org/10.1021/jacs.5c09057
record:
- id: '20321'
relation: research_data
status: public
status: public
title: 'Dataset for "Bumps on the Road: The Way to Clean Relaxation Dispersion in
the Solid State"'
tmp:
image: /images/cc_by_nc_sa.png
legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
BY-NC-SA 4.0)
short: CC BY-NC-SA (4.0)
type: research_data
user_id: 68b8ca59-c5b3-11ee-8790-cd641c68093d
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '19699'
abstract:
- lang: eng
text: We demonstrate that gas disks around binary systems might deliver gas to the
binary components only when the circumbinary disk is relatively warm. We present
new grid-based hydrodynamics simulations, performed with the binary on the grid
and a locally isothermal equation of state, in which the binary is seen to functionally
"stop accreting" if the orbital Mach number in the disk exceeds a threshold value
of about 40. Above this threshold, the disk continues to extract angular momentum
from the binary orbit, but it delivers very little mass to the black holes and
instead piles up mass in a ring surrounding the binary. This ring will eventually
become viscously relaxed and deliver mass to the binary at the large-scale inflow
rate. However, we show that the timescale for such relaxation can far exceed the
implied binary lifetime. We demonstrate that the ability of a binary–disk system
to equilibrate is dependent on the efficiency at which accretion streams deposit
mass onto the binary, which, in turn is highly sensitive to the thermodynamic
conditions of the inner disk. If disks around massive black hole binaries do operate
in such nonaccreting regimes, it suggests these systems may be dimmer than their
single black hole counterparts but could exhibit dramatic rebrightening after
the black holes inspiral and merge. This dimming begins in the UV/optical and
could completely choke high-energy emission, such that these systems would likely
be intrinsically X-ray weak with reddened continua, potentially resembling the
spectra of "little red dots" recently identified in JWST observations.
acknowledgement: C.T. sincerely thanks Daniel J. D'Orazio for useful and illuminating
discussions. This work was supported by the European Union's Horizon 2023 research
and innovation program under Marie Sklodowska-Curie grant agreement No. 101148364,
by Sapere Aude Starting grant No. 121587 through the Danish Independent Research
Fund, by the LISA Preparatory Science Program (LPS) through NASA grant 80NSSC24K0440,
and by NASA Astrophysics Theory Program (ATP) grant 80NSSC22K0822. Computation time
for this work was supported through the NYU IT High Performance Computing resources
as well as the Tycho supercomputer hosted at the SCIENCE HPC center at the University
of Copenhagen.
article_number: '144'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Christopher
full_name: Tiede, Christopher
last_name: Tiede
- first_name: Jonathan
full_name: Zrake, Jonathan
last_name: Zrake
- first_name: Andrew
full_name: Macfadyen, Andrew
last_name: Macfadyen
- first_name: Zoltán
full_name: Haiman, Zoltán
id: 7c006e8c-cc0d-11ee-8322-cb904ef76f36
last_name: Haiman
orcid: 0000-0003-3633-5403
citation:
ama: Tiede C, Zrake J, Macfadyen A, Haiman Z. Suppressed accretion onto massive
black hole binaries surrounded by thin disks. The Astrophysical Journal.
2025;984(2). doi:10.3847/1538-4357/adc727
apa: Tiede, C., Zrake, J., Macfadyen, A., & Haiman, Z. (2025). Suppressed accretion
onto massive black hole binaries surrounded by thin disks. The Astrophysical
Journal. IOP Publishing. https://doi.org/10.3847/1538-4357/adc727
chicago: Tiede, Christopher, Jonathan Zrake, Andrew Macfadyen, and Zoltán Haiman.
“Suppressed Accretion onto Massive Black Hole Binaries Surrounded by Thin Disks.”
The Astrophysical Journal. IOP Publishing, 2025. https://doi.org/10.3847/1538-4357/adc727.
ieee: C. Tiede, J. Zrake, A. Macfadyen, and Z. Haiman, “Suppressed accretion onto
massive black hole binaries surrounded by thin disks,” The Astrophysical Journal,
vol. 984, no. 2. IOP Publishing, 2025.
ista: Tiede C, Zrake J, Macfadyen A, Haiman Z. 2025. Suppressed accretion onto massive
black hole binaries surrounded by thin disks. The Astrophysical Journal. 984(2),
144.
mla: Tiede, Christopher, et al. “Suppressed Accretion onto Massive Black Hole Binaries
Surrounded by Thin Disks.” The Astrophysical Journal, vol. 984, no. 2,
144, IOP Publishing, 2025, doi:10.3847/1538-4357/adc727.
short: C. Tiede, J. Zrake, A. Macfadyen, Z. Haiman, The Astrophysical Journal 984
(2025).
date_created: 2025-05-18T22:02:49Z
date_published: 2025-05-09T00:00:00Z
date_updated: 2026-02-16T12:42:56Z
day: '09'
ddc:
- '520'
department:
- _id: ZoHa
doi: 10.3847/1538-4357/adc727
external_id:
arxiv:
- '2410.03830'
isi:
- '001483889000001'
file:
- access_level: open_access
checksum: 0d4c57ee944599c0789f3db467c5ca2f
content_type: application/pdf
creator: dernst
date_created: 2025-05-19T07:20:30Z
date_updated: 2025-05-19T07:20:30Z
file_id: '19708'
file_name: 2025_AstrophysicalJour_Tiede.pdf
file_size: 1058601
relation: main_file
success: 1
file_date_updated: 2025-05-19T07:20:30Z
fulldoi: https://doi.org/10.3847/1538-4357/adc727
has_accepted_license: '1'
intvolume: ' 984'
isi: 1
issue: '2'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
publication: The Astrophysical Journal
publication_identifier:
eissn:
- 1538-4357
issn:
- 0004-637X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Suppressed accretion onto massive black hole binaries surrounded by thin disks
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 984
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '19700'
abstract:
- lang: eng
text: The JWST discovery of "little red dots" (LRDs) is reshaping our picture of
the early Universe, yet the physical mechanisms driving their compact size and
UV-optical colors remain elusive. Here, we report an unusually bright LRD (zspec
= 3.1) observed as part of the RUBIES program. This LRD exhibits broad emission
lines (FWHM ∼ 4000 km s−1), a blue UV continuum, a clear Balmer break, and a red
continuum sampled out to rest-frame 4 μm with MIRI. We develop a new joint galaxy
and active galactic nucleus (AGN) model within the Prospector Bayesian inference
framework and perform spectrophotometric modeling using NIRCam, MIRI, and NIRSpec/Prism
observations. Our fiducial model reveals a M* ∼ 109 M⊙ galaxy alongside a dust-reddened
AGN driving the optical emission. Explaining the rest-frame optical color as a
reddened AGN requires AV ≳ 3, suggesting that a great majority of the accretion
disk energy is reradiated as dust emission. Yet, despite clear AGN signatures,
we find a surprising lack of hot torus emission, which implies that either the
dust emission in this object must be cold, or the red continuum must instead be
driven by a massive, evolved stellar population of the host galaxy—seemingly inconsistent
with the high-EW broad lines (Hα rest-frame EW ∼ 800 Å). The widths and luminosities
of Pa-β, Pa-δ, Pa-γ, and Hα imply a modest black hole mass of MBH ∼ 108 M⊙. Additionally,
we identify a narrow blueshifted He i λ 1.083 μm absorption feature in NIRSpec/G395M
spectra, signaling an ionized outflow with kinetic energy up to ∼1% the luminosity
of the AGN. The low redshift of RUBIES-BLAGN-1, combined with the depth and richness
of the JWST imaging and spectroscopic observations, provides a unique opportunity
to build a physical model for these so-far mysterious LRDs, which may prove to
be a crucial phase in the early formation of massive galaxies and their supermassive
black holes.
acknowledgement: 'B.W. and J.L. acknowledge support from JWST-GO-04233.009-A. R.L.D.
is supported by the Australian Research Council through the Discovery Early Career
Researcher Award (DECRA) Fellowship DE240100136 funded by the Australian Government.
T.B.M. was supported by a CIERA postdoctoral fellowship. The Cosmic Dawn Center
is funded by the Danish National Research Foundation (DNRF) under grant #140. This
research was supported by the International Space Science Institute (ISSI) in Bern,
through ISSI International Team project #562 (First Light at Cosmic Dawn: Exploiting
the James Webb Space Telescope Revolution). The JWST data presented in this article
were obtained from the Mikulski Archive for Space Telescopes (MAST) at the Space
Telescope Science Institute. The specific observations analyzed here can be accessed
via DOI:10.17909/c3t4-9p39. Computations for this research were performed on the
Pennsylvania State University''s Institute for Computational and Data Sciences''
Roar supercomputer. This publication made use of the NASA Astrophysical Data System
for bibliographic information.'
article_number: '121'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Bingjie
full_name: Wang, Bingjie
last_name: Wang
- first_name: Anna
full_name: De Graaff, Anna
last_name: De Graaff
- first_name: Rebecca L.
full_name: Davies, Rebecca L.
last_name: Davies
- first_name: Jenny E.
full_name: Greene, Jenny E.
last_name: Greene
- first_name: Joel
full_name: Leja, Joel
last_name: Leja
- first_name: Gabriel B.
full_name: Brammer, Gabriel B.
last_name: Brammer
- first_name: Andy D.
full_name: Goulding, Andy D.
last_name: Goulding
- first_name: Tim B.
full_name: Miller, Tim B.
last_name: Miller
- first_name: Katherine A.
full_name: Suess, Katherine A.
last_name: Suess
- first_name: Andrea
full_name: Weibel, Andrea
last_name: Weibel
- first_name: Christina C.
full_name: Williams, Christina C.
last_name: Williams
- first_name: Rachel
full_name: Bezanson, Rachel
last_name: Bezanson
- first_name: Leindert A.
full_name: Boogaard, Leindert A.
last_name: Boogaard
- first_name: Nikko J.
full_name: Cleri, Nikko J.
last_name: Cleri
- first_name: Michaela
full_name: Hirschmann, Michaela
last_name: Hirschmann
- first_name: Harley
full_name: Katz, Harley
last_name: Katz
- first_name: Ivo
full_name: Labbé, Ivo
last_name: Labbé
- first_name: Michael V.
full_name: Maseda, Michael V.
last_name: Maseda
- first_name: Jorryt J
full_name: Matthee, Jorryt J
id: 7439a258-f3c0-11ec-9501-9df22fe06720
last_name: Matthee
orcid: 0000-0003-2871-127X
- first_name: Ian
full_name: Mcconachie, Ian
last_name: Mcconachie
- first_name: Rohan P.
full_name: Naidu, Rohan P.
last_name: Naidu
- first_name: Pascal A.
full_name: Oesch, Pascal A.
last_name: Oesch
- first_name: Hans Walter
full_name: Rix, Hans Walter
last_name: Rix
- first_name: David J.
full_name: Setton, David J.
last_name: Setton
- first_name: Katherine E.
full_name: Whitaker, Katherine E.
last_name: Whitaker
citation:
ama: 'Wang B, De Graaff A, Davies RL, et al. RUBIES: JWST/NIRSpec confirmation of
an infrared-luminous, broad-line Little Red Dot with an ionized outflow. The
Astrophysical Journal. 2025;984(2). doi:10.3847/1538-4357/adc1ca'
apa: 'Wang, B., De Graaff, A., Davies, R. L., Greene, J. E., Leja, J., Brammer,
G. B., … Whitaker, K. E. (2025). RUBIES: JWST/NIRSpec confirmation of an infrared-luminous,
broad-line Little Red Dot with an ionized outflow. The Astrophysical Journal.
IOP Publishing. https://doi.org/10.3847/1538-4357/adc1ca'
chicago: 'Wang, Bingjie, Anna De Graaff, Rebecca L. Davies, Jenny E. Greene, Joel
Leja, Gabriel B. Brammer, Andy D. Goulding, et al. “RUBIES: JWST/NIRSpec Confirmation
of an Infrared-Luminous, Broad-Line Little Red Dot with an Ionized Outflow.” The
Astrophysical Journal. IOP Publishing, 2025. https://doi.org/10.3847/1538-4357/adc1ca.'
ieee: 'B. Wang et al., “RUBIES: JWST/NIRSpec confirmation of an infrared-luminous,
broad-line Little Red Dot with an ionized outflow,” The Astrophysical Journal,
vol. 984, no. 2. IOP Publishing, 2025.'
ista: 'Wang B, De Graaff A, Davies RL, Greene JE, Leja J, Brammer GB, Goulding AD,
Miller TB, Suess KA, Weibel A, Williams CC, Bezanson R, Boogaard LA, Cleri NJ,
Hirschmann M, Katz H, Labbé I, Maseda MV, Matthee JJ, Mcconachie I, Naidu RP,
Oesch PA, Rix HW, Setton DJ, Whitaker KE. 2025. RUBIES: JWST/NIRSpec confirmation
of an infrared-luminous, broad-line Little Red Dot with an ionized outflow. The
Astrophysical Journal. 984(2), 121.'
mla: 'Wang, Bingjie, et al. “RUBIES: JWST/NIRSpec Confirmation of an Infrared-Luminous,
Broad-Line Little Red Dot with an Ionized Outflow.” The Astrophysical Journal,
vol. 984, no. 2, 121, IOP Publishing, 2025, doi:10.3847/1538-4357/adc1ca.'
short: B. Wang, A. De Graaff, R.L. Davies, J.E. Greene, J. Leja, G.B. Brammer, A.D.
Goulding, T.B. Miller, K.A. Suess, A. Weibel, C.C. Williams, R. Bezanson, L.A.
Boogaard, N.J. Cleri, M. Hirschmann, H. Katz, I. Labbé, M.V. Maseda, J.J. Matthee,
I. Mcconachie, R.P. Naidu, P.A. Oesch, H.W. Rix, D.J. Setton, K.E. Whitaker, The
Astrophysical Journal 984 (2025).
date_created: 2025-05-18T22:02:49Z
date_published: 2025-05-09T00:00:00Z
date_updated: 2026-02-16T12:42:43Z
day: '09'
ddc:
- '520'
department:
- _id: JoMa
doi: 10.3847/1538-4357/adc1ca
external_id:
arxiv:
- '2403.02304'
isi:
- '001481589300001'
file:
- access_level: open_access
checksum: 1a9ff4516d11808bc6947744473c9fc2
content_type: application/pdf
creator: dernst
date_created: 2025-05-19T07:08:39Z
date_updated: 2025-05-19T07:08:39Z
file_id: '19707'
file_name: 2025_AstrophysicalJour_Wang.pdf
file_size: 3522072
relation: main_file
success: 1
file_date_updated: 2025-05-19T07:08:39Z
fulldoi: https://doi.org/10.3847/1538-4357/adc1ca
has_accepted_license: '1'
intvolume: ' 984'
isi: 1
issue: '2'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
publication: The Astrophysical Journal
publication_identifier:
eissn:
- 1538-4357
issn:
- 0004-637X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'RUBIES: JWST/NIRSpec confirmation of an infrared-luminous, broad-line Little
Red Dot with an ionized outflow'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 984
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '19702'
abstract:
- lang: eng
text: Moran Birth-death process is a standard stochastic process that is used to
model natural selection in spatially structured populations. A newly occurring
mutation that invades a population of residents can either fixate on the whole
population or it can go extinct due to random drift. The duration of the process
depends not only on the total population size n, but also on the spatial structure
of the population. In this work, we consider the Moran process with a single type
of individuals who invade and colonize an otherwise empty environment. Mathematically,
this corresponds to the setting where the residents have zero reproduction rate,
thus they never reproduce. The spatial structure is represented by a graph. We
present two main contributions. First, in contrast to the Moran process in which
residents do reproduce, we show that the colonization time is always at most a
polynomial function of the population size n. Namely, we show that colonization
always takes at most 1/2n^3 - 1/2n^2 expected steps, and for each n, we identify
the slowest graph where it takes exactly that many steps. Moreover, we establish
a stronger bound of roughly n^2.5 steps for undirected graphs and an even stronger
bound of roughly n^2 steps for so-called regular graphs. Second, we discuss various
complications that one faces when attempting to measure fixation times and colonization
times in spatially structured populations, and we propose to measure the real
duration of the process, rather than counting the steps of the classic Moran process.
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Lenka
full_name: Kopfová, Lenka
id: 17691681-50b9-11ef-ad56-edf4cacb21b0
last_name: Kopfová
- first_name: Josef
full_name: Tkadlec, Josef
id: 3F24CCC8-F248-11E8-B48F-1D18A9856A87
last_name: Tkadlec
orcid: 0000-0002-1097-9684
citation:
ama: Kopfová L, Tkadlec J. Colonization times in Moran process on graphs. PLoS
computational biology. 2025;21(5):e1012868. doi:10.1371/journal.pcbi.1012868
apa: Kopfová, L., & Tkadlec, J. (2025). Colonization times in Moran process
on graphs. PLoS Computational Biology. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1012868
chicago: Kopfová, Lenka, and Josef Tkadlec. “Colonization Times in Moran Process
on Graphs.” PLoS Computational Biology. Public Library of Science, 2025.
https://doi.org/10.1371/journal.pcbi.1012868.
ieee: L. Kopfová and J. Tkadlec, “Colonization times in Moran process on graphs,”
PLoS computational biology, vol. 21, no. 5. Public Library of Science,
p. e1012868, 2025.
ista: Kopfová L, Tkadlec J. 2025. Colonization times in Moran process on graphs.
PLoS computational biology. 21(5), e1012868.
mla: Kopfová, Lenka, and Josef Tkadlec. “Colonization Times in Moran Process on
Graphs.” PLoS Computational Biology, vol. 21, no. 5, Public Library of
Science, 2025, p. e1012868, doi:10.1371/journal.pcbi.1012868.
short: L. Kopfová, J. Tkadlec, PLoS Computational Biology 21 (2025) e1012868.
date_created: 2025-05-18T22:02:50Z
date_published: 2025-05-01T00:00:00Z
date_updated: 2025-09-30T12:34:03Z
day: '01'
ddc:
- '000'
department:
- _id: GradSch
doi: 10.1371/journal.pcbi.1012868
external_id:
arxiv:
- '2410.09476'
isi:
- '001481670600002'
file:
- access_level: open_access
checksum: 73e35151eebd5064972c5a07ffdf2b69
content_type: application/pdf
creator: dernst
date_created: 2025-05-19T07:45:31Z
date_updated: 2025-05-19T07:45:31Z
file_id: '19709'
file_name: 2025_PloSCompBio_Kopfova.pdf
file_size: 6805943
relation: main_file
success: 1
file_date_updated: 2025-05-19T07:45:31Z
fulldoi: https://doi.org/10.1371/journal.pcbi.1012868
has_accepted_license: '1'
intvolume: ' 21'
isi: 1
issue: '5'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: e1012868
publication: PLoS computational biology
publication_identifier:
eissn:
- 1553-7358
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Colonization times in Moran process on graphs
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 21
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '19703'
abstract:
- lang: eng
text: An enlarged brain underlies the complex central nervous system of vertebrates.
The dramatic expansion of the brain that diverges its shape from the spinal cord
follows neural tube closure during embryonic development. Here, we show that this
differential deformation is encoded by a pre-pattern of tissue material properties
in chicken embryos. Using magnetic droplets and atomic force microscopy, we demonstrate
that the dorsal hindbrain is more fluid than the dorsal spinal cord, resulting
in a thinning versus a resisting response to increasing lumen pressure, respectively.
The dorsal hindbrain exhibits reduced apical actin and a disorganized laminin
matrix consistent with tissue fluidization. Blocking the activity of neural-crest-associated
matrix metalloproteinases inhibits hindbrain expansion. Transplanting dorsal hindbrain
cells to the spinal cord can locally create an expanded brain-like morphology
in some cases. Our findings raise questions in vertebrate head evolution and suggest
a general role of mechanical pre-patterning in sculpting epithelial tubes.
acknowledgement: 'We thank A. Dimitracopoulos, K. Kawaguchi, J. Vidigueira, B. Baum,
I. McLaren, D. St Johnston, and members of the Buckley, Scarpa, Steventon, Kawaguchi,
and Xiong labs for technical assistance and constructive feedback. We thank Ryan
Greenhalgh for methods developed to obtain fluidity values from AFM data. We thank
Nicola Lawrence, Alex Sossick, and Sargon Gross-Thebing from the Gurdon Institute
Imaging Facility for microscopy support. Funding: this work was supported by a Wellcome
Trust/Royal Society Sir Henry Dale Fellowship (215439/Z/19/Z) and UKRI-EPSRC Frontier
Research Grant (EP/X023761/1, originally selected as an ERC Starting Grant) to F.X.;
an ERC Consolidator Grant (772426), ERC Synergy Grant 101118729 UNFOLD, and Alexander
von Humboldt Professorship ( Alexander von Humboldt Foundation) to K.F.; and an
ERC Starting Grant (851288) to E.H.'
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Susannah B.P.
full_name: Mclaren, Susannah B.P.
last_name: Mclaren
- first_name: Shi-lei
full_name: Xue, Shi-lei
id: 31D2C804-F248-11E8-B48F-1D18A9856A87
last_name: Xue
- first_name: Siyuan
full_name: Ding, Siyuan
last_name: Ding
- first_name: Alexander K.
full_name: Winkel, Alexander K.
last_name: Winkel
- first_name: Oscar
full_name: Baldwin, Oscar
last_name: Baldwin
- first_name: Shreya
full_name: Dwarakacherla, Shreya
last_name: Dwarakacherla
- first_name: Kristian
full_name: Franze, Kristian
last_name: Franze
- first_name: Edouard B
full_name: Hannezo, Edouard B
id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
last_name: Hannezo
orcid: 0000-0001-6005-1561
- first_name: Fengzhu
full_name: Xiong, Fengzhu
last_name: Xiong
citation:
ama: Mclaren SBP, Xue S, Ding S, et al. Differential tissue deformability underlies
fluid pressure-driven shape divergence of the avian embryonic brain and spinal
cord. Developmental Cell. 2025;60(17):2237-2247.e4. doi:10.1016/j.devcel.2025.04.010
apa: Mclaren, S. B. P., Xue, S., Ding, S., Winkel, A. K., Baldwin, O., Dwarakacherla,
S., … Xiong, F. (2025). Differential tissue deformability underlies fluid pressure-driven
shape divergence of the avian embryonic brain and spinal cord. Developmental
Cell. Elsevier. https://doi.org/10.1016/j.devcel.2025.04.010
chicago: Mclaren, Susannah B.P., Shi-lei Xue, Siyuan Ding, Alexander K. Winkel,
Oscar Baldwin, Shreya Dwarakacherla, Kristian Franze, Edouard B Hannezo, and Fengzhu
Xiong. “Differential Tissue Deformability Underlies Fluid Pressure-Driven Shape
Divergence of the Avian Embryonic Brain and Spinal Cord.” Developmental Cell.
Elsevier, 2025. https://doi.org/10.1016/j.devcel.2025.04.010.
ieee: S. B. P. Mclaren et al., “Differential tissue deformability underlies
fluid pressure-driven shape divergence of the avian embryonic brain and spinal
cord,” Developmental Cell, vol. 60, no. 17. Elsevier, p. 2237–2247.e4,
2025.
ista: Mclaren SBP, Xue S, Ding S, Winkel AK, Baldwin O, Dwarakacherla S, Franze
K, Hannezo EB, Xiong F. 2025. Differential tissue deformability underlies fluid
pressure-driven shape divergence of the avian embryonic brain and spinal cord.
Developmental Cell. 60(17), 2237–2247.e4.
mla: Mclaren, Susannah B. P., et al. “Differential Tissue Deformability Underlies
Fluid Pressure-Driven Shape Divergence of the Avian Embryonic Brain and Spinal
Cord.” Developmental Cell, vol. 60, no. 17, Elsevier, 2025, p. 2237–2247.e4,
doi:10.1016/j.devcel.2025.04.010.
short: S.B.P. Mclaren, S. Xue, S. Ding, A.K. Winkel, O. Baldwin, S. Dwarakacherla,
K. Franze, E.B. Hannezo, F. Xiong, Developmental Cell 60 (2025) 2237–2247.e4.
date_created: 2025-05-18T22:02:50Z
date_published: 2025-09-08T00:00:00Z
date_updated: 2025-12-29T14:58:14Z
day: '08'
ddc:
- '570'
department:
- _id: EdHa
doi: 10.1016/j.devcel.2025.04.010
ec_funded: 1
external_id:
isi:
- '001570502100005'
pmid:
- '40347948'
file:
- access_level: open_access
checksum: 1ca6f0822c1cbd430686d5e2a4f96401
content_type: application/pdf
creator: dernst
date_created: 2025-12-29T13:45:05Z
date_updated: 2025-12-29T13:45:05Z
file_id: '20872'
file_name: 2025_DevelopmentalCell_McLaren.pdf
file_size: 12564806
relation: main_file
success: 1
file_date_updated: 2025-12-29T13:45:05Z
fulldoi: https://doi.org/10.1016/j.devcel.2025.04.010
has_accepted_license: '1'
intvolume: ' 60'
isi: 1
issue: '17'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 2237-2247.e4
pmid: 1
project:
- _id: 05943252-7A3F-11EA-A408-12923DDC885E
call_identifier: H2020
grant_number: '851288'
name: Design Principles of Branching Morphogenesis
publication: Developmental Cell
publication_identifier:
eissn:
- 1878-1551
issn:
- 1534-5807
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Differential tissue deformability underlies fluid pressure-driven shape divergence
of the avian embryonic brain and spinal cord
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 60
year: '2025'
...
---
APC_amount: 2320,48 EUR
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '19705'
abstract:
- lang: eng
text: A maximal realization of the two-dimensional Pauli operator, subject to Aharonov–Bohm
magnetic field, is investigated. Contrary to the case of the Pauli operator with
regular magnetic potentials, it is shown that both components of the Pauli operator
are critical. Asymptotics of the weakly coupled eigenvalues, generated by electric
(not necessarily self-adjoint) perturbations, are derived.
acknowledgement: Thanks belong to Johannes Ageskov and Matˇej Tuˇsek for helpful discussions
on some technical details. M. F. would further like to acknowledge support for research
on this paper from the European Unions Horizon 2020 research and innovation programme
under the Marie Sklodowska-Curie Grant Agreement No. 101034413 as well as support
by funding from Villum Fonden through the QMATH Centreof Excellence Grant No. 10059.
D. K. was supported by the EXPRO Grant No.20-17749X of the Czech Science Foundation
(GACR).
article_number: '2550011'
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Marie
full_name: Fialova, Marie
id: e9c9844d-9e21-11ec-b482-f96fc09f7c4d
last_name: Fialova
- first_name: David
full_name: Krejčiřík, David
last_name: Krejčiřík
citation:
ama: Fialova M, Krejčiřík D. Virtual bound states of the Pauli operator with an
Aharonov–Bohm potential. Reviews in Mathematical Physics. 2025;37(6). doi:10.1142/S0129055X25500114
apa: Fialova, M., & Krejčiřík, D. (2025). Virtual bound states of the Pauli
operator with an Aharonov–Bohm potential. Reviews in Mathematical Physics.
World Scientific Publishing. https://doi.org/10.1142/S0129055X25500114
chicago: Fialova, Marie, and David Krejčiřík. “Virtual Bound States of the Pauli
Operator with an Aharonov–Bohm Potential.” Reviews in Mathematical Physics.
World Scientific Publishing, 2025. https://doi.org/10.1142/S0129055X25500114.
ieee: M. Fialova and D. Krejčiřík, “Virtual bound states of the Pauli operator with
an Aharonov–Bohm potential,” Reviews in Mathematical Physics, vol. 37,
no. 6. World Scientific Publishing, 2025.
ista: Fialova M, Krejčiřík D. 2025. Virtual bound states of the Pauli operator with
an Aharonov–Bohm potential. Reviews in Mathematical Physics. 37(6), 2550011.
mla: Fialova, Marie, and David Krejčiřík. “Virtual Bound States of the Pauli Operator
with an Aharonov–Bohm Potential.” Reviews in Mathematical Physics, vol.
37, no. 6, 2550011, World Scientific Publishing, 2025, doi:10.1142/S0129055X25500114.
short: M. Fialova, D. Krejčiřík, Reviews in Mathematical Physics 37 (2025).
date_created: 2025-05-18T22:02:51Z
date_published: 2025-07-01T00:00:00Z
date_updated: 2026-05-06T13:03:25Z
day: '01'
ddc:
- '530'
- '510'
department:
- _id: RoSe
doi: 10.1142/S0129055X25500114
ec_funded: 1
external_id:
arxiv:
- '2501.17029'
isi:
- '001481012500001'
file:
- access_level: open_access
checksum: 559d97ee2da28bf0bd2c6af507f3a914
content_type: application/pdf
creator: dernst
date_created: 2025-12-30T08:23:12Z
date_updated: 2025-12-30T08:23:12Z
file_id: '20893'
file_name: 2025_ReviewsMathPhysics_Fialova.pdf
file_size: 484646
relation: main_file
success: 1
file_date_updated: 2025-12-30T08:23:12Z
fulldoi: https://doi.org/10.1142/S0129055X25500114
has_accepted_license: '1'
intvolume: ' 37'
isi: 1
issue: '6'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
call_identifier: H2020
grant_number: '101034413'
name: 'IST-BRIDGE: International postdoctoral program'
publication: Reviews in Mathematical Physics
publication_identifier:
eissn:
- 1793-6659
issn:
- 0129-055X
publication_status: published
publisher: World Scientific Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Virtual bound states of the Pauli operator with an Aharonov–Bohm potential
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 37
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '19712'
abstract:
- lang: eng
text: "We study recent algebraic attacks (Briaud-Øygarden EC’23) on the Regular
Syndrome Decoding (RSD) problem and the assumptions underlying the correctness
of their attacks’ complexity estimates. By relating these assumptions to interesting
algebraic-combinatorial problems, we prove that they do not hold in full generality.
However, we show that they are (asymptotically) true for most parameter sets,
supporting the soundness of algebraic attacks on RSD. Further, we prove—without
any heuristics or assumptions—that RSD can be broken in polynomial time whenever
the number of error blocks times the square of the size of error blocks is larger
than 2 times the square of the dimension of the code.\r\nAdditionally, we use
our methodology to attack a variant of the Learning With Errors problem where
each error term lies in a fixed set of constant size. We prove that this problem
can be broken in polynomial time, given a sufficient number of samples. This result
improves on the seminal work by Arora and Ge (ICALP’11), as the attack’s time
complexity is independent of the LWE modulus."
acknowledgement: We thank Pierre Briaud and Morten Øygarden for helpful discussions
on algebraic attacks on RSD, and the EC reviewers for helpful comments.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Miguel
full_name: Cueto Noval, Miguel
id: ffc563a3-f6e0-11ea-865d-e3cce03d17cc
last_name: Cueto Noval
orcid: 0000-0002-2505-4246
- first_name: Simon-Philipp
full_name: Merz, Simon-Philipp
last_name: Merz
- first_name: Patrick
full_name: Stählin, Patrick
last_name: Stählin
- first_name: Akin
full_name: Ünal, Akin
id: f6b56fb6-dc63-11ee-9dbf-f6780863a85a
last_name: Ünal
orcid: 0000-0002-8929-0221
citation:
ama: 'Cueto Noval M, Merz S-P, Stählin P, Ünal A. On the soundness of algebraic
attacks against code-based assumptions. In: 44th Annual International Conference
on the Theory and Applications of Cryptographic Techniques. Vol 15606. Springer
Nature; 2025:385-415. doi:10.1007/978-3-031-91095-1_14'
apa: 'Cueto Noval, M., Merz, S.-P., Stählin, P., & Ünal, A. (2025). On the soundness
of algebraic attacks against code-based assumptions. In 44th Annual International
Conference on the Theory and Applications of Cryptographic Techniques (Vol.
15606, pp. 385–415). Madrid, Spain: Springer Nature. https://doi.org/10.1007/978-3-031-91095-1_14'
chicago: Cueto Noval, Miguel, Simon-Philipp Merz, Patrick Stählin, and Akin Ünal.
“On the Soundness of Algebraic Attacks against Code-Based Assumptions.” In 44th
Annual International Conference on the Theory and Applications of Cryptographic
Techniques, 15606:385–415. Springer Nature, 2025. https://doi.org/10.1007/978-3-031-91095-1_14.
ieee: M. Cueto Noval, S.-P. Merz, P. Stählin, and A. Ünal, “On the soundness of algebraic
attacks against code-based assumptions,” in 44th Annual International Conference
on the Theory and Applications of Cryptographic Techniques, Madrid, Spain,
2025, vol. 15606, pp. 385–415.
ista: 'Cueto Noval M, Merz S-P, Stählin P, Ünal A. 2025. On the soundness of algebraic
attacks against code-based assumptions. 44th Annual International Conference on
the Theory and Applications of Cryptographic Techniques. EUROCRYPT: International
Conference on the Theory and Applications of Cryptographic Techniques, LNCS, vol.
15606, 385–415.'
mla: Cueto Noval, Miguel, et al. “On the Soundness of Algebraic Attacks against
Code-Based Assumptions.” 44th Annual International Conference on the Theory
and Applications of Cryptographic Techniques, vol. 15606, Springer Nature,
2025, pp. 385–415, doi:10.1007/978-3-031-91095-1_14.
short: M. Cueto Noval, S.-P. Merz, P. Stählin, A. Ünal, in:, 44th Annual International
Conference on the Theory and Applications of Cryptographic Techniques, Springer
Nature, 2025, pp. 385–415.
conference:
end_date: 2025-05-08
location: Madrid, Spain
name: 'EUROCRYPT: International Conference on the Theory and Applications of Cryptographic
Techniques'
start_date: 2025-05-04
corr_author: '1'
date_created: 2025-05-19T14:15:01Z
date_published: 2025-04-28T00:00:00Z
date_updated: 2025-05-28T06:12:39Z
day: '28'
department:
- _id: KrPi
doi: 10.1007/978-3-031-91095-1_14
fulldoi: https://doi.org/10.1007/978-3-031-91095-1_14
intvolume: ' 15606'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.research-collection.ethz.ch/handle/20.500.11850/732894
month: '04'
oa: 1
oa_version: Submitted Version
page: 385-415
publication: 44th Annual International Conference on the Theory and Applications of
Cryptographic Techniques
publication_identifier:
eisbn:
- '9783031910951'
eissn:
- 1611-3349
isbn:
- '9783031910944'
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: On the soundness of algebraic attacks against code-based assumptions
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 15606
year: '2025'
...
---
OA_place: publisher
OA_type: free access
_id: '19713'
abstract:
- lang: eng
text: Distributed optimization is the standard way of speeding up machine learning
training, and most of the research in the area focuses on distributed first-order,
gradient-based methods. Yet, there are settings where some computationally-bounded
nodes may not be able to implement first-order, gradient-based optimization, while
they could still contribute to joint optimization tasks. In this paper, we initiate
the study of hybrid decentralized optimization, studying settings where nodes
with zeroth-order and first-order optimization capabilities co-exist in a distributed
system, and attempt to jointly solve an optimization task over some data distribution.
We essentially show that, under reasonable parameter settings, such a system can
not only withstand noisier zeroth-order agents but can even benefit from integrating
such agents into the optimization process, rather than ignoring their information.
At the core of our approach is a new analysis of distributed optimization with
noisy and possibly-biased gradient estimators, which may be of independent interest.
Our results hold for both convex and non-convex objectives. Experimental results
on standard optimization tasks confirm our analysis, showing that hybrid first-zeroth
order optimization can be practical, even when training deep neural networks.
acknowledgement: "This project has received funding from the European Research Council
(ERC) under the European Union’s Horizon 2020 research and innovation programme
(grant agreement\r\nNo 805223 ScaleML). The authors would like to acknowledge Eugenia
Iofinova for useful discussions during the inception of this project."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Shayan
full_name: Talaei, Shayan
last_name: Talaei
- first_name: Matin
full_name: Ansaripour, Matin
last_name: Ansaripour
- first_name: Giorgi
full_name: Nadiradze, Giorgi
id: 3279A00C-F248-11E8-B48F-1D18A9856A87
last_name: Nadiradze
orcid: 0000-0001-5634-0731
- first_name: Dan-Adrian
full_name: Alistarh, Dan-Adrian
id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
last_name: Alistarh
orcid: 0000-0003-3650-940X
citation:
ama: 'Talaei S, Ansaripour M, Nadiradze G, Alistarh D-A. Hybrid decentralized optimization:
Leveraging both first- and zeroth-order optimizers for faster convergence. Proceedings
of the 39th AAAI Conference on Artificial Intelligence. 2025;39(19):20778-20786.
doi:10.1609/aaai.v39i19.34290'
apa: 'Talaei, S., Ansaripour, M., Nadiradze, G., & Alistarh, D.-A. (2025). Hybrid
decentralized optimization: Leveraging both first- and zeroth-order optimizers
for faster convergence. Proceedings of the 39th AAAI Conference on Artificial
Intelligence. Association for the Advancement of Artificial Intelligence.
https://doi.org/10.1609/aaai.v39i19.34290'
chicago: 'Talaei, Shayan, Matin Ansaripour, Giorgi Nadiradze, and Dan-Adrian Alistarh.
“Hybrid Decentralized Optimization: Leveraging Both First- and Zeroth-Order Optimizers
for Faster Convergence.” Proceedings of the 39th AAAI Conference on Artificial
Intelligence. Association for the Advancement of Artificial Intelligence,
2025. https://doi.org/10.1609/aaai.v39i19.34290.'
ieee: 'S. Talaei, M. Ansaripour, G. Nadiradze, and D.-A. Alistarh, “Hybrid decentralized
optimization: Leveraging both first- and zeroth-order optimizers for faster convergence,”
Proceedings of the 39th AAAI Conference on Artificial Intelligence, vol.
39, no. 19. Association for the Advancement of Artificial Intelligence, pp. 20778–20786,
2025.'
ista: 'Talaei S, Ansaripour M, Nadiradze G, Alistarh D-A. 2025. Hybrid decentralized
optimization: Leveraging both first- and zeroth-order optimizers for faster convergence.
Proceedings of the 39th AAAI Conference on Artificial Intelligence. 39(19), 20778–20786.'
mla: 'Talaei, Shayan, et al. “Hybrid Decentralized Optimization: Leveraging Both
First- and Zeroth-Order Optimizers for Faster Convergence.” Proceedings of
the 39th AAAI Conference on Artificial Intelligence, vol. 39, no. 19, Association
for the Advancement of Artificial Intelligence, 2025, pp. 20778–86, doi:10.1609/aaai.v39i19.34290.'
short: S. Talaei, M. Ansaripour, G. Nadiradze, D.-A. Alistarh, Proceedings of the
39th AAAI Conference on Artificial Intelligence 39 (2025) 20778–20786.
corr_author: '1'
date_created: 2025-05-19T14:15:35Z
date_published: 2025-04-11T00:00:00Z
date_updated: 2026-02-16T12:34:44Z
day: '11'
department:
- _id: DaAl
doi: 10.1609/aaai.v39i19.34290
ec_funded: 1
external_id:
arxiv:
- '2210.07703'
fulldoi: https://doi.org/10.1609/aaai.v39i19.34290
intvolume: ' 39'
issue: '19'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1609/aaai.v39i19.34290
month: '04'
oa: 1
oa_version: Preprint
page: 20778-20786
project:
- _id: 268A44D6-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '805223'
name: Elastic Coordination for Scalable Machine Learning
publication: Proceedings of the 39th AAAI Conference on Artificial Intelligence
publication_identifier:
eissn:
- 2374-3468
issn:
- 2159-5399
publication_status: published
publisher: Association for the Advancement of Artificial Intelligence
quality_controlled: '1'
related_material:
link:
- relation: software
url: https://github.com/ShayanTalaei/HDO
scopus_import: '1'
status: public
title: 'Hybrid decentralized optimization: Leveraging both first- and zeroth-order
optimizers for faster convergence'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 39
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '19718'
abstract:
- lang: eng
text: The cerebral cortex is arguably the most complex organ in humans. The cortical
architecture is characterized by a remarkable diversity of neuronal and glial
cell types that make up its neuronal circuits. Following a precise temporally
ordered program, radial glia progenitor (RGP) cells generate all cortical excitatory
projection neurons and glial cell-types. Cortical excitatory projection neurons
are produced either directly or via intermediate progenitors, through indirect
neurogenesis. How the extensive cortical cell-type diversity is generated during
cortex development remains, however, a fundamental open question. How do RGPs
quantitatively and qualitatively generate all the neocortical neurons? How does
direct and indirect neurogenesis contribute to the establishment of neuronal and
lineage heterogeneity? Whether RGPs represent a homogeneous and/or multipotent
progenitor population, or if RGPs consist of heterogeneous groups is currently
also not known. In this review, we will summarize the latest findings that contributed
to a deeper insight into the above key questions.
acknowledgement: We wish to thank all members of the Hippenmeyer laboratory at ISTA
for exciting discussions on the subject of this review. We apologize to colleagues
whose work we could not cite and/or discuss in the frame of the available space.
Work in the Hippenmeyer laboratory on the discussed topic is supported by ISTA institutional
funds, an EMBO LTF (ALTF 994–2023) to F.P, and FWF SFB F78 to S.H.
article_number: '103046'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Fabrizia
full_name: Pipicelli, Fabrizia
id: 649134fd-d012-11ed-8f82-db1e5050f9ba
last_name: Pipicelli
- first_name: Ana
full_name: Villalba Requena, Ana
id: 68cb85a0-39f7-11eb-9559-9aaab4f6a247
last_name: Villalba Requena
orcid: 0000-0002-5615-5277
- first_name: Simon
full_name: Hippenmeyer, Simon
id: 37B36620-F248-11E8-B48F-1D18A9856A87
last_name: Hippenmeyer
orcid: 0000-0003-2279-1061
citation:
ama: Pipicelli F, Villalba Requena A, Hippenmeyer S. How radial glia progenitor
lineages generate cell-type diversity in the developing cerebral cortex. Current
Opinion in Neurobiology. 2025;93. doi:10.1016/j.conb.2025.103046
apa: Pipicelli, F., Villalba Requena, A., & Hippenmeyer, S. (2025). How radial
glia progenitor lineages generate cell-type diversity in the developing cerebral
cortex. Current Opinion in Neurobiology. Elsevier. https://doi.org/10.1016/j.conb.2025.103046
chicago: Pipicelli, Fabrizia, Ana Villalba Requena, and Simon Hippenmeyer. “How
Radial Glia Progenitor Lineages Generate Cell-Type Diversity in the Developing
Cerebral Cortex.” Current Opinion in Neurobiology. Elsevier, 2025. https://doi.org/10.1016/j.conb.2025.103046.
ieee: F. Pipicelli, A. Villalba Requena, and S. Hippenmeyer, “How radial glia progenitor
lineages generate cell-type diversity in the developing cerebral cortex,” Current
Opinion in Neurobiology, vol. 93. Elsevier, 2025.
ista: Pipicelli F, Villalba Requena A, Hippenmeyer S. 2025. How radial glia progenitor
lineages generate cell-type diversity in the developing cerebral cortex. Current
Opinion in Neurobiology. 93, 103046.
mla: Pipicelli, Fabrizia, et al. “How Radial Glia Progenitor Lineages Generate Cell-Type
Diversity in the Developing Cerebral Cortex.” Current Opinion in Neurobiology,
vol. 93, 103046, Elsevier, 2025, doi:10.1016/j.conb.2025.103046.
short: F. Pipicelli, A. Villalba Requena, S. Hippenmeyer, Current Opinion in Neurobiology
93 (2025).
corr_author: '1'
date_created: 2025-05-20T10:20:09Z
date_published: 2025-08-01T00:00:00Z
date_updated: 2025-12-30T10:54:14Z
day: '01'
ddc:
- '570'
department:
- _id: SiHi
doi: 10.1016/j.conb.2025.103046
external_id:
isi:
- '001496227000001'
pmid:
- '40383049'
file:
- access_level: open_access
checksum: 05bacb4acbe6275d43e873dec9ba1d52
content_type: application/pdf
creator: dernst
date_created: 2025-12-30T08:25:49Z
date_updated: 2025-12-30T08:25:49Z
file_id: '20894'
file_name: 2025_CurrentOpNeurobiology_Pipicelli.pdf
file_size: 1592649
relation: main_file
success: 1
file_date_updated: 2025-12-30T08:25:49Z
fulldoi: https://doi.org/10.1016/j.conb.2025.103046
has_accepted_license: '1'
intvolume: ' 93'
isi: 1
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 059F6AB4-7A3F-11EA-A408-12923DDC885E
grant_number: F7805
name: Stem Cell Modulation in Neural Development and Regeneration/ P05-Molecular
Mechanisms of Neural Stem Cell Lineage Progression
- _id: 7c084566-9f16-11ee-852c-c88a1dbbf1cf
grant_number: ALTF 994-2023
name: Role of cell lineage in generating cell-type diversity in developing neocortex’
publication: Current Opinion in Neurobiology
publication_identifier:
issn:
- 0959-4388
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: How radial glia progenitor lineages generate cell-type diversity in the developing
cerebral cortex
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 93
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '19725'
abstract:
- lang: eng
text: Protein-protein interactions (PPIs) mediate many fundamental cellular processes.
Control of PPIs through optically or chemically responsive protein domains has
had a profound impact on basic research and some clinical applications. Most chemogenetic
methods induce the association, i.e., dimerization or oligomerization, of target
proteins, whilst the few available dissociation approaches either break large
oligomeric protein clusters or heteromeric complexes. Here, we have exploited
the controlled dissociation of a homodimeric oxidoreductase from mycobacteria
(MSMEG_2027) by its native cofactor, F420, which is not present in mammals, as
a bioorthogonal monomerization switch. Using X-ray crystallography, we found that
in the absence of F420 MSMEG_2027 forms a unique domain-swapped dimer that occludes
the cofactor binding site. Rearrangement of the N-terminal helix upon F420 binding
results in the dissolution of the dimer. We then showed that MSMEG_2027 can be
fused to proteins of interest in human cells and applied it as a tool to induce
and release MAPK/ERK signalling downstream of a chimeric fibroblast growth factor
receptor 1 (FGFR1) tyrosine kinase. This F420-dependent chemogenetic de-homodimerization
tool is stoichiometric and based on a single domain and thus represents a novel
mechanism to investigate protein complexes in situ.
acknowledgement: We thank J. Kaczmarski for advice on isothermal titration calorimetry
and helpful comments, and Alexandra Tichy, Elliot Gerrard and Rahkesh T Sabapathy
for assistance with experiments. This study was supported by grants of the Australian
Research Council (FT200100519 and DP200102093, to H.J.; DE190100806, DP220101901,
FT230100203, and DP250102939 to T.P.S.D.C; DP200102093, CE200100029 and CE200100012
to C.J.J.), the National Health and Medical Research Council (APP1187638, to H.J.).
S.K. was supported by the graduate program MolecularDrugTargets (Austrian Science
Fund FWF W1232). The Australian Regenerative Medicine Institute is supported by
grants from the State Government of Victoria and the Australian Government. The
EMBL Australia Partnership Laboratory (EMBL Australia) is supported by the National
Collaborative Research Infrastructure Strategy (NCRIS) of the Australian Government.
T.P.S.D.C. acknowledges the University of Adelaide for a Future Making Fellowship.
E.R.R.M acknowledges the Grains Research and Development Corporation (9176977) for
support through a PhD scholarship and operational funding. J.A. and E.R.R.M. were
supported by Australian Research Training Program scholarship. MicroMon of Monash
University provided Sanger sequencing services. Imaging was performed in the CellScreen
SA screening center of Flinders University. C.J.J. thanks the ARC Centre of Excellence
for Innovations in Peptide and Protein Science and the ARC Centre of Excellence
in Synthetic Biology. We thank the staff of the MX2 beamline at the Australian Synchrotron,
part of ANSTO, which made use of the Australian Cancer Research Foundation (ACRF)
detector.
article_number: '169184'
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: James
full_name: Antoney, James
last_name: Antoney
- first_name: Stephanie
full_name: Kainrath, Stephanie
id: 32CFBA64-F248-11E8-B48F-1D18A9856A87
last_name: Kainrath
orcid: 0000-0002-6709-2195
- first_name: Joshua G.
full_name: Dubowsky, Joshua G.
last_name: Dubowsky
- first_name: F. Hafna
full_name: Ahmed, F. Hafna
last_name: Ahmed
- first_name: Suk Woo
full_name: Kang, Suk Woo
last_name: Kang
- first_name: Emily R.R.
full_name: Mackie, Emily R.R.
last_name: Mackie
- first_name: Gustavo
full_name: Bracho Granado, Gustavo
last_name: Bracho Granado
- first_name: Tatiana P.
full_name: Soares Da Costa, Tatiana P.
last_name: Soares Da Costa
- first_name: Colin J.
full_name: Jackson, Colin J.
last_name: Jackson
- first_name: Harald L
full_name: Janovjak, Harald L
id: 33BA6C30-F248-11E8-B48F-1D18A9856A87
last_name: Janovjak
orcid: 0000-0002-8023-9315
citation:
ama: Antoney J, Kainrath S, Dubowsky JG, et al. A F420-dependent single domain chemogenetic
tool for protein de-dimerization. Journal of Molecular Biology. 2025;437(17).
doi:10.1016/j.jmb.2025.169184
apa: Antoney, J., Kainrath, S., Dubowsky, J. G., Ahmed, F. H., Kang, S. W., Mackie,
E. R. R., … Janovjak, H. L. (2025). A F420-dependent single domain chemogenetic
tool for protein de-dimerization. Journal of Molecular Biology. Elsevier.
https://doi.org/10.1016/j.jmb.2025.169184
chicago: Antoney, James, Stephanie Kainrath, Joshua G. Dubowsky, F. Hafna Ahmed,
Suk Woo Kang, Emily R.R. Mackie, Gustavo Bracho Granado, Tatiana P. Soares Da
Costa, Colin J. Jackson, and Harald L Janovjak. “A F420-Dependent Single Domain
Chemogenetic Tool for Protein de-Dimerization.” Journal of Molecular Biology.
Elsevier, 2025. https://doi.org/10.1016/j.jmb.2025.169184.
ieee: J. Antoney et al., “A F420-dependent single domain chemogenetic tool
for protein de-dimerization,” Journal of Molecular Biology, vol. 437, no.
17. Elsevier, 2025.
ista: Antoney J, Kainrath S, Dubowsky JG, Ahmed FH, Kang SW, Mackie ERR, Bracho
Granado G, Soares Da Costa TP, Jackson CJ, Janovjak HL. 2025. A F420-dependent
single domain chemogenetic tool for protein de-dimerization. Journal of Molecular
Biology. 437(17), 169184.
mla: Antoney, James, et al. “A F420-Dependent Single Domain Chemogenetic Tool for
Protein de-Dimerization.” Journal of Molecular Biology, vol. 437, no. 17,
169184, Elsevier, 2025, doi:10.1016/j.jmb.2025.169184.
short: J. Antoney, S. Kainrath, J.G. Dubowsky, F.H. Ahmed, S.W. Kang, E.R.R. Mackie,
G. Bracho Granado, T.P. Soares Da Costa, C.J. Jackson, H.L. Janovjak, Journal
of Molecular Biology 437 (2025).
date_created: 2025-05-25T22:16:39Z
date_published: 2025-09-01T00:00:00Z
date_updated: 2025-12-30T08:18:25Z
day: '01'
ddc:
- '570'
department:
- _id: CaGu
doi: 10.1016/j.jmb.2025.169184
external_id:
isi:
- '001494762800001'
pmid:
- '40324743'
file:
- access_level: open_access
checksum: fb6e84ba7dc92faee97647fd2bc8cca8
content_type: application/pdf
creator: dernst
date_created: 2025-12-30T08:18:07Z
date_updated: 2025-12-30T08:18:07Z
file_id: '20892'
file_name: 2025_JourMolecularBiology_Antoney.pdf
file_size: 1682721
relation: main_file
success: 1
file_date_updated: 2025-12-30T08:18:07Z
fulldoi: https://doi.org/10.1016/j.jmb.2025.169184
has_accepted_license: '1'
intvolume: ' 437'
isi: 1
issue: '17'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 255A6082-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: W1232-B24
name: Molecular Drug Targets
publication: Journal of Molecular Biology
publication_identifier:
eissn:
- 1089-8638
issn:
- 0022-2836
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: A F420-dependent single domain chemogenetic tool for protein de-dimerization
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 437
year: '2025'
...
---
OA_type: closed access
_id: '19726'
abstract:
- lang: eng
text: The oxidation of biomass-derived compounds such as glucose within electrochemical
cells enables both the energy-efficient production of hydrogen and the generation
of additional added-value chemicals from biomass. However, for this biomass valorization
approach to become commercially viable, selective, cost-effective, and highly
active electrooxidation catalysts need to be developed. In this work, we detail
the synthesis of a nickel (Ni) and zinc (Zn)-based electrocatalyst for the glucose
oxidation reaction (GOR) to formic acid (FoA) via calcination of a Zn-based zeolitic
imidazole framework (ZIF) functionalized with ethylenediamine and doped with Ni.
The structure, morphology, and electrochemical performance of the catalysts towards
the anodic GOR to FoA coupled with the cathodic hydrogen evolution reaction (HER)
are subsequently studied. Chronopotentiometry tests with 0.1 M of glucose show
a conversion of 94 % at 250 mA in only 70 min, with a Faradaic efficiency (FE)
of 91 % toward the production of FoA. Meanwhile, at the cathode, the HER FE is
close to 98 %.
acknowledgement: 'This work was financially supported by the SyDECat and AmaDE projects
from the Spanish MCIN/AEI/FEDER (PID2022-136883OB-C22 & PID2023-149158OB-C43). The
authors acknowledge funding from Generalitat de Catalunya 2021SGR01581, 2021SGR00457
and European Union Next Generation EU/PRTR. KVMC acknowledges the grant from Call
906 of 2021 for Doctorates Abroad from the Ministry of Science, Technology, and
Innovation of Colombia. PRMA acknowledges support from the Ramón y Cajal grant RYC2023-042982-I,
funded by MICIU/AEI (10.13039/501100011033) and co-financed by FSE+. This study
is part of the Advanced Materials programme and was supported by MCIN with funding
from European Union NextGenerationEU (PRTR-C17.I1) and by Generalitat de Catalunya
(In-CAEM Project). ICN2 is supported by the Severo Ochoa program from Spanish MCIN
/ AEI (Grant No.: CEX2021-001214-S) and is funded by the CERCA Programme / Generalitat
de Catalunya. ICN2 is founding member of e-DREAM. [76] J.L. is a Serra Húnter Fellow
and is grateful to the ICREA Academia program and to projects PID2021-124572OB-C31
and CEX2023-001300-M funded by MCIN/AEI/10.13039/501100011033, EU and FEDER, and
to the GC 2021 SGR 01061 grant.'
article_number: '163491'
article_processing_charge: No
article_type: original
author:
- first_name: Karol V.
full_name: Mejia-Centeno, Karol V.
last_name: Mejia-Centeno
- first_name: Guillem
full_name: Montaña-Mora, Guillem
last_name: Montaña-Mora
- first_name: Jesús
full_name: Chacón-Borrero, Jesús
last_name: Chacón-Borrero
- first_name: Qian
full_name: Xue, Qian
last_name: Xue
- first_name: Li
full_name: Gong, Li
last_name: Gong
- first_name: Sara
full_name: Martí-Sánchez, Sara
last_name: Martí-Sánchez
- first_name: Armando
full_name: Berlanga-Vázquez, Armando
last_name: Berlanga-Vázquez
- first_name: Jordi
full_name: Llorca, Jordi
last_name: Llorca
- first_name: Maria
full_name: Ibáñez, Maria
id: 43C61214-F248-11E8-B48F-1D18A9856A87
last_name: Ibáñez
orcid: 0000-0001-5013-2843
- first_name: Jordi
full_name: Arbiol, Jordi
last_name: Arbiol
- first_name: Xueqiang
full_name: Qi, Xueqiang
last_name: Qi
- first_name: Paulina R.
full_name: Martinez-Alanis, Paulina R.
last_name: Martinez-Alanis
- first_name: Andreu
full_name: Cabot, Andreu
last_name: Cabot
citation:
ama: Mejia-Centeno KV, Montaña-Mora G, Chacón-Borrero J, et al. Glucose electrooxidation
with simultaneous H2 production on nickel-zinc electrocatalysts derived from an
ethylenediamine-functionalized zeolitic imidazole framework. Chemical Engineering
Journal. 2025;515. doi:10.1016/j.cej.2025.163491
apa: Mejia-Centeno, K. V., Montaña-Mora, G., Chacón-Borrero, J., Xue, Q., Gong,
L., Martí-Sánchez, S., … Cabot, A. (2025). Glucose electrooxidation with simultaneous
H2 production on nickel-zinc electrocatalysts derived from an ethylenediamine-functionalized
zeolitic imidazole framework. Chemical Engineering Journal. Elsevier. https://doi.org/10.1016/j.cej.2025.163491
chicago: Mejia-Centeno, Karol V., Guillem Montaña-Mora, Jesús Chacón-Borrero, Qian
Xue, Li Gong, Sara Martí-Sánchez, Armando Berlanga-Vázquez, et al. “Glucose Electrooxidation
with Simultaneous H2 Production on Nickel-Zinc Electrocatalysts Derived from an
Ethylenediamine-Functionalized Zeolitic Imidazole Framework.” Chemical Engineering
Journal. Elsevier, 2025. https://doi.org/10.1016/j.cej.2025.163491.
ieee: K. V. Mejia-Centeno et al., “Glucose electrooxidation with simultaneous
H2 production on nickel-zinc electrocatalysts derived from an ethylenediamine-functionalized
zeolitic imidazole framework,” Chemical Engineering Journal, vol. 515.
Elsevier, 2025.
ista: Mejia-Centeno KV, Montaña-Mora G, Chacón-Borrero J, Xue Q, Gong L, Martí-Sánchez
S, Berlanga-Vázquez A, Llorca J, Ibáñez M, Arbiol J, Qi X, Martinez-Alanis PR,
Cabot A. 2025. Glucose electrooxidation with simultaneous H2 production on nickel-zinc
electrocatalysts derived from an ethylenediamine-functionalized zeolitic imidazole
framework. Chemical Engineering Journal. 515, 163491.
mla: Mejia-Centeno, Karol V., et al. “Glucose Electrooxidation with Simultaneous
H2 Production on Nickel-Zinc Electrocatalysts Derived from an Ethylenediamine-Functionalized
Zeolitic Imidazole Framework.” Chemical Engineering Journal, vol. 515,
163491, Elsevier, 2025, doi:10.1016/j.cej.2025.163491.
short: K.V. Mejia-Centeno, G. Montaña-Mora, J. Chacón-Borrero, Q. Xue, L. Gong,
S. Martí-Sánchez, A. Berlanga-Vázquez, J. Llorca, M. Ibáñez, J. Arbiol, X. Qi,
P.R. Martinez-Alanis, A. Cabot, Chemical Engineering Journal 515 (2025).
date_created: 2025-05-25T22:16:40Z
date_published: 2025-07-01T00:00:00Z
date_updated: 2025-12-30T08:28:59Z
day: '01'
department:
- _id: MaIb
doi: 10.1016/j.cej.2025.163491
external_id:
isi:
- '001501928300003'
fulldoi: https://doi.org/10.1016/j.cej.2025.163491
intvolume: ' 515'
isi: 1
language:
- iso: eng
month: '07'
oa_version: None
publication: Chemical Engineering Journal
publication_identifier:
issn:
- 1385-8947
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Glucose electrooxidation with simultaneous H2 production on nickel-zinc electrocatalysts
derived from an ethylenediamine-functionalized zeolitic imidazole framework
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 515
year: '2025'
...
---
APC_amount: 5937,40 EUR
OA_place: publisher
OA_type: hybrid
_id: '19728'
abstract:
- lang: eng
text: Root system integrates multiple environmental cues, chiefly gravity and soil
humidity, to anchor plants in soil and forage for water. While the mechanism of
auxin-mediated root gravitropism is comparably well-understood, the root’s capability
to grow toward moist soil for water uptake and drought avoidance, termed root
hydrotropism, remains largely mysterious. Here, we provide key insights into the
mechanism of hydrotropic growth and assign a role to the master regulator of hydrotropism,
MIZU-KUSSEI 1 (MIZ1). We show that efficient hydrotropism requires the attenuation
of antagonistically acting gravitropism, which is inhibited under drought conditions.
Drought stress interferes with subcellular trafficking and the lateral mobility
of PIN auxin transporters, which are polarly localized at the root cell plasma
membranes. This leads to defects in PIN2 polarity and gravity-induced polarization
of PIN3, ultimately inhibiting gravity-induced auxin redistribution and root bending.
The miz1 mutant is defective in all these regulations, and in support of MIZ1’s
action on PINs, pin mutations rescue the hydrotropic defects in the miz1 mutant.
These observations identify a mechanism for how drought via MIZ1 attenuates gravitropism
to promote root hydrotropism for efficient water foraging under drought conditions.
acknowledgement: This work was supported by the European Union’s Horizon 2020 research
and innovation Programme (European Research Council grant agreement number 742985),
Austrian Science Fund (FWF, grant number I 3630-B25), (Institute of Science and
Technology Austria) Fellow program, the Qin Chuangyuan High-level Innovation and
Entrepreneurship Talent Program (QCYRCXM-2022-237), the Fundamental Research Funds
for Northwest A&F University and partly supported by the open funds of the State
Key Laboratory of Plant Environmental Resilience (SKLPERKF2416). We also thank the
Teaching and Research Core Facility at the College of Life Sciences, Northwest A&F
University, particularly Dr. Ningjuan Fan for technical assistance.
article_number: e2427315122
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Yuzhou
full_name: Zhang, Yuzhou
id: 3B6137F2-F248-11E8-B48F-1D18A9856A87
last_name: Zhang
orcid: 0000-0003-2627-6956
- first_name: Zhulatai
full_name: Bao, Zhulatai
last_name: Bao
- first_name: Adrijana
full_name: Smoljan, Adrijana
id: cced8a85-223e-11ed-af04-b0596c55053b
last_name: Smoljan
- first_name: Yifan
full_name: Liu, Yifan
last_name: Liu
- first_name: Huihui
full_name: Wang, Huihui
last_name: Wang
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Zhang Y, Bao Z, Smoljan A, Liu Y, Wang H, Friml J. Foraging for water by MIZ1-mediated
antagonism between root gravitropism and hydrotropism. Proceedings of the National
Academy of Sciences. 2025;122(20). doi:10.1073/pnas.2427315122
apa: Zhang, Y., Bao, Z., Smoljan, A., Liu, Y., Wang, H., & Friml, J. (2025).
Foraging for water by MIZ1-mediated antagonism between root gravitropism and hydrotropism.
Proceedings of the National Academy of Sciences. National Academy of Sciences.
https://doi.org/10.1073/pnas.2427315122
chicago: Zhang, Yuzhou, Zhulatai Bao, Adrijana Smoljan, Yifan Liu, Huihui Wang,
and Jiří Friml. “Foraging for Water by MIZ1-Mediated Antagonism between Root Gravitropism
and Hydrotropism.” Proceedings of the National Academy of Sciences. National
Academy of Sciences, 2025. https://doi.org/10.1073/pnas.2427315122.
ieee: Y. Zhang, Z. Bao, A. Smoljan, Y. Liu, H. Wang, and J. Friml, “Foraging for
water by MIZ1-mediated antagonism between root gravitropism and hydrotropism,”
Proceedings of the National Academy of Sciences, vol. 122, no. 20. National
Academy of Sciences, 2025.
ista: Zhang Y, Bao Z, Smoljan A, Liu Y, Wang H, Friml J. 2025. Foraging for water
by MIZ1-mediated antagonism between root gravitropism and hydrotropism. Proceedings
of the National Academy of Sciences. 122(20), e2427315122.
mla: Zhang, Yuzhou, et al. “Foraging for Water by MIZ1-Mediated Antagonism between
Root Gravitropism and Hydrotropism.” Proceedings of the National Academy of
Sciences, vol. 122, no. 20, e2427315122, National Academy of Sciences, 2025,
doi:10.1073/pnas.2427315122.
short: Y. Zhang, Z. Bao, A. Smoljan, Y. Liu, H. Wang, J. Friml, Proceedings of the
National Academy of Sciences 122 (2025).
corr_author: '1'
date_created: 2025-05-25T22:16:43Z
date_published: 2025-05-20T00:00:00Z
date_updated: 2026-05-20T08:34:21Z
day: '20'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1073/pnas.2427315122
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title: Foraging for water by MIZ1-mediated antagonism between root gravitropism and
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