---
_id: '18433'
abstract:
- lang: eng
text: The computer vision and pattern recognition communities have recently witnessed
a surge of feature-based methods in object recognition and image retrieval applications.
These methods allow representing images as collections of “visual words” and treat
them using text search approaches following the “bag of features” paradigm. In
this article, we explore analogous approaches in the 3D world applied to the problem
of nonrigid shape retrieval in large databases. Using multiscale diffusion heat
kernels as “geometric words,” we construct compact and informative shape descriptors
by means of the “bag of features” approach. We also show that considering pairs
of “geometric words” (“geometric expressions”) allows creating spatially sensitive
bags of features with better discriminative power. Finally, adopting metric learning
approaches, we show that shapes can be efficiently represented as binary codes.
Our approach achieves state-of-the-art results on the SHREC 2010 large-scale shape
retrieval benchmark.
article_processing_charge: No
author:
- first_name: Alexander
full_name: Bronstein, Alexander
id: 58f3726e-7cba-11ef-ad8b-e6e8cb3904e6
last_name: Bronstein
orcid: 0000-0001-9699-8730
- first_name: Michael M.
full_name: Bronstein, Michael M.
last_name: Bronstein
- first_name: Leonidas J.
full_name: Guibas, Leonidas J.
last_name: Guibas
- first_name: Maks
full_name: Ovsjanikov, Maks
last_name: Ovsjanikov
citation:
ama: 'Bronstein AM, Bronstein MM, Guibas LJ, Ovsjanikov M. Shape google: Geometric
words and expressions for invariant shape retrieval. ACM Transactions on Graphics.
2011;30(1):1-20. doi:10.1145/1899404.1899405'
apa: 'Bronstein, A. M., Bronstein, M. M., Guibas, L. J., & Ovsjanikov, M. (2011).
Shape google: Geometric words and expressions for invariant shape retrieval. ACM
Transactions on Graphics. Association for Computing Machinery. https://doi.org/10.1145/1899404.1899405'
chicago: 'Bronstein, Alex M., Michael M. Bronstein, Leonidas J. Guibas, and Maks
Ovsjanikov. “Shape Google: Geometric Words and Expressions for Invariant Shape
Retrieval.” ACM Transactions on Graphics. Association for Computing Machinery,
2011. https://doi.org/10.1145/1899404.1899405.'
ieee: 'A. M. Bronstein, M. M. Bronstein, L. J. Guibas, and M. Ovsjanikov, “Shape
google: Geometric words and expressions for invariant shape retrieval,” ACM
Transactions on Graphics, vol. 30, no. 1. Association for Computing Machinery,
pp. 1–20, 2011.'
ista: 'Bronstein AM, Bronstein MM, Guibas LJ, Ovsjanikov M. 2011. Shape google:
Geometric words and expressions for invariant shape retrieval. ACM Transactions
on Graphics. 30(1), 1–20.'
mla: 'Bronstein, Alex M., et al. “Shape Google: Geometric Words and Expressions
for Invariant Shape Retrieval.” ACM Transactions on Graphics, vol. 30,
no. 1, Association for Computing Machinery, 2011, pp. 1–20, doi:10.1145/1899404.1899405.'
short: A.M. Bronstein, M.M. Bronstein, L.J. Guibas, M. Ovsjanikov, ACM Transactions
on Graphics 30 (2011) 1–20.
date_created: 2024-10-15T11:20:55Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2024-12-18T14:59:43Z
day: '01'
doi: 10.1145/1899404.1899405
extern: '1'
intvolume: ' 30'
issue: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: 1-20
publication: ACM Transactions on Graphics
publication_identifier:
eissn:
- 1557-7368
issn:
- 0730-0301
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Shape google: Geometric words and expressions for invariant shape retrieval'
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 30
year: '2011'
...
---
_id: '1863'
abstract:
- lang: eng
text: The Levene model is the simplest mathematical model to describe the evolution
of gene frequencies in spatially subdivided populations. It provides insight into
how locally varying selection promotes a population’s genetic diversity. Despite
its simplicity, interesting problems have remained unsolved even in the diallelic
case. In this paper we answer an open problem by establishing that for two alleles
at one locus and J demes, up to 2J−1 polymorphic equilibria may coexist. We first
present a proof for the case of stable monomorphisms and then show that the result
also holds for protected alleles. These findings allow us to prove that any odd
number (up to 2J−1) of equilibria is possible, before we extend the proof to even
numbers. We conclude with some numerical results and show that for J>2, the
proportion of parameter space affording this maximum is extremely small.
acknowledgement: FWF 21305
author:
- first_name: Sebastian
full_name: Sebastian Novak
id: 461468AE-F248-11E8-B48F-1D18A9856A87
last_name: Novak
citation:
ama: Novak S. The number of equilibria in the diallelic Levene model with multiple
demes. Theoretical Population Biology. 2011;79(3):97-101. doi:10.1016/j.tpb.2010.12.002
apa: Novak, S. (2011). The number of equilibria in the diallelic Levene model with
multiple demes. Theoretical Population Biology. Academic Press. https://doi.org/10.1016/j.tpb.2010.12.002
chicago: Novak, Sebastian. “The Number of Equilibria in the Diallelic Levene Model
with Multiple Demes.” Theoretical Population Biology. Academic Press, 2011.
https://doi.org/10.1016/j.tpb.2010.12.002.
ieee: S. Novak, “The number of equilibria in the diallelic Levene model with multiple
demes,” Theoretical Population Biology, vol. 79, no. 3. Academic Press,
pp. 97–101, 2011.
ista: Novak S. 2011. The number of equilibria in the diallelic Levene model with
multiple demes. Theoretical Population Biology. 79(3), 97–101.
mla: Novak, Sebastian. “The Number of Equilibria in the Diallelic Levene Model with
Multiple Demes.” Theoretical Population Biology, vol. 79, no. 3, Academic
Press, 2011, pp. 97–101, doi:10.1016/j.tpb.2010.12.002.
short: S. Novak, Theoretical Population Biology 79 (2011) 97–101.
date_created: 2018-12-11T11:54:25Z
date_published: 2011-05-01T00:00:00Z
date_updated: 2021-01-12T06:53:42Z
day: '01'
doi: 10.1016/j.tpb.2010.12.002
extern: 1
intvolume: ' 79'
issue: '3'
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '05'
page: 97 - 101
publication: Theoretical Population Biology
publication_status: published
publisher: Academic Press
publist_id: '5236'
quality_controlled: 0
status: public
title: The number of equilibria in the diallelic Levene model with multiple demes
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
volume: 79
year: '2011'
...
---
_id: '12649'
abstract:
- lang: eng
text: Physically based hydrological models describe natural processes more accurately
than conceptual models but require extensive data sets to produce accurate results.
To identify the value of different data sets for improving the performance of
the distributed hydrological model TOPKAPI we combine a multivariable validation
technique with Monte Carlo simulations. The study is carried out in the snow and
ice-dominated Rhonegletscher basin, as these types of mountainous basins are generally
the most critical with respect to data availability and sensitivity to climate
fluctuations. Each observational data set is used individually and in combination
with the other data sets to determine a subset of best parameter combinations
out of 10,000 Monte Carlos runs performed with randomly generated parameter sets.
We validate model results against discharge, glacier mass balance, and satellite
snow cover images for a 14 year time period (1994–2007). While the use of all
data sets combined provides the best overall model performance (defined by the
concurrent best agreement of simulated discharge, snow cover and mass balance
with their respective measurements), the use of one or two variables for constraining
the model results in poorer performance. Using only one data set for constraining
the model glacier mass balance proved to be the most efficient observation leading
to the best overall model performance. Our main result is that a combination of
discharge and satellite snow cover images is best for improving model performance,
since the volumetric information of discharge data and the spatial information
of snow cover images are complementary.
article_number: W07519
article_processing_charge: No
article_type: original
author:
- first_name: David
full_name: Finger, David
last_name: Finger
- first_name: Francesca
full_name: Pellicciotti, Francesca
id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
last_name: Pellicciotti
orcid: 0000-0002-5554-8087
- first_name: Markus
full_name: Konz, Markus
last_name: Konz
- first_name: Stefan
full_name: Rimkus, Stefan
last_name: Rimkus
- first_name: Paolo
full_name: Burlando, Paolo
last_name: Burlando
citation:
ama: Finger D, Pellicciotti F, Konz M, Rimkus S, Burlando P. The value of glacier
mass balance, satellite snow cover images, and hourly discharge for improving
the performance of a physically based distributed hydrological model. Water
Resources Research. 2011;47(7). doi:10.1029/2010wr009824
apa: Finger, D., Pellicciotti, F., Konz, M., Rimkus, S., & Burlando, P. (2011).
The value of glacier mass balance, satellite snow cover images, and hourly discharge
for improving the performance of a physically based distributed hydrological model.
Water Resources Research. American Geophysical Union. https://doi.org/10.1029/2010wr009824
chicago: Finger, David, Francesca Pellicciotti, Markus Konz, Stefan Rimkus, and
Paolo Burlando. “The Value of Glacier Mass Balance, Satellite Snow Cover Images,
and Hourly Discharge for Improving the Performance of a Physically Based Distributed
Hydrological Model.” Water Resources Research. American Geophysical Union,
2011. https://doi.org/10.1029/2010wr009824.
ieee: D. Finger, F. Pellicciotti, M. Konz, S. Rimkus, and P. Burlando, “The value
of glacier mass balance, satellite snow cover images, and hourly discharge for
improving the performance of a physically based distributed hydrological model,”
Water Resources Research, vol. 47, no. 7. American Geophysical Union, 2011.
ista: Finger D, Pellicciotti F, Konz M, Rimkus S, Burlando P. 2011. The value of
glacier mass balance, satellite snow cover images, and hourly discharge for improving
the performance of a physically based distributed hydrological model. Water Resources
Research. 47(7), W07519.
mla: Finger, David, et al. “The Value of Glacier Mass Balance, Satellite Snow Cover
Images, and Hourly Discharge for Improving the Performance of a Physically Based
Distributed Hydrological Model.” Water Resources Research, vol. 47, no.
7, W07519, American Geophysical Union, 2011, doi:10.1029/2010wr009824.
short: D. Finger, F. Pellicciotti, M. Konz, S. Rimkus, P. Burlando, Water Resources
Research 47 (2011).
date_created: 2023-02-20T08:18:03Z
date_published: 2011-07-01T00:00:00Z
date_updated: 2024-10-14T12:01:21Z
day: '01'
doi: 10.1029/2010wr009824
extern: '1'
intvolume: ' 47'
issue: '7'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1029/2010WR009824
month: '07'
oa: 1
oa_version: Published Version
publication: Water Resources Research
publication_identifier:
issn:
- 0043-1397
publication_status: published
publisher: American Geophysical Union
quality_controlled: '1'
scopus_import: '1'
status: public
title: The value of glacier mass balance, satellite snow cover images, and hourly
discharge for improving the performance of a physically based distributed hydrological
model
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 47
year: '2011'
...
---
_id: '12650'
abstract:
- lang: eng
text: Streamflow is a hydrological variable measured at a defined river cross-section;
it spatially integrates the runoff generating processes in the contributing watershed,
including precipitation and air temperature. Trends in streamflow are progressive
changes in the time series of streamflow that can be detected with statistical
methods and their statistical significance can be assessed. Mountainous regions
are particularly vulnerable to streamflow change because of their high specific
runoff and the sensitivity to the distribution of precipitation and air temperature,
and the processes of snow accumulation and melt.
alternative_title:
- Encyclopedia of Earth Sciences Series
article_processing_charge: No
author:
- first_name: Peter
full_name: Molnar, Peter
last_name: Molnar
- first_name: Paolo
full_name: Burlando, Paolo
last_name: Burlando
- first_name: Francesca
full_name: Pellicciotti, Francesca
id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
last_name: Pellicciotti
citation:
ama: 'Molnar P, Burlando P, Pellicciotti F. Streamflow Trends in Mountainous Regions.
In: Singh V, Singh P, Haritashya U, eds. Encyclopedia of Snow, Ice and Glaciers.
1st ed. Dordrecht: Springer Nature; 2011:1084-1089. doi:10.1007/978-90-481-2642-2_543'
apa: 'Molnar, P., Burlando, P., & Pellicciotti, F. (2011). Streamflow Trends
in Mountainous Regions. In V. Singh, P. Singh, & U. Haritashya (Eds.), Encyclopedia
of Snow, Ice and Glaciers (1st ed., pp. 1084–1089). Dordrecht: Springer Nature.
https://doi.org/10.1007/978-90-481-2642-2_543'
chicago: 'Molnar, Peter, Paolo Burlando, and Francesca Pellicciotti. “Streamflow
Trends in Mountainous Regions.” In Encyclopedia of Snow, Ice and Glaciers,
edited by Vijay Singh, Pratap Singh, and Umesh Haritashya, 1st ed., 1084–89. Dordrecht:
Springer Nature, 2011. https://doi.org/10.1007/978-90-481-2642-2_543.'
ieee: 'P. Molnar, P. Burlando, and F. Pellicciotti, “Streamflow Trends in Mountainous
Regions,” in Encyclopedia of Snow, Ice and Glaciers, 1st ed., V. Singh,
P. Singh, and U. Haritashya, Eds. Dordrecht: Springer Nature, 2011, pp. 1084–1089.'
ista: 'Molnar P, Burlando P, Pellicciotti F. 2011.Streamflow Trends in Mountainous
Regions. In: Encyclopedia of Snow, Ice and Glaciers. Encyclopedia of Earth Sciences
Series, , 1084–1089.'
mla: Molnar, Peter, et al. “Streamflow Trends in Mountainous Regions.” Encyclopedia
of Snow, Ice and Glaciers, edited by Vijay Singh et al., 1st ed., Springer
Nature, 2011, pp. 1084–89, doi:10.1007/978-90-481-2642-2_543.
short: P. Molnar, P. Burlando, F. Pellicciotti, in:, V. Singh, P. Singh, U. Haritashya
(Eds.), Encyclopedia of Snow, Ice and Glaciers, 1st ed., Springer Nature, Dordrecht,
2011, pp. 1084–1089.
date_created: 2023-02-20T08:18:07Z
date_published: 2011-07-01T00:00:00Z
date_updated: 2023-02-20T10:35:28Z
day: '01'
doi: 10.1007/978-90-481-2642-2_543
edition: '1'
editor:
- first_name: Vijay
full_name: Singh, Vijay
last_name: Singh
- first_name: Pratap
full_name: Singh, Pratap
last_name: Singh
- first_name: Umesh
full_name: Haritashya, Umesh
last_name: Haritashya
extern: '1'
language:
- iso: eng
month: '07'
oa_version: None
page: 1084-1089
place: Dordrecht
publication: Encyclopedia of Snow, Ice and Glaciers
publication_identifier:
eisbn:
- 978-90-481-2642-2
eissn:
- 1871-756X
isbn:
- 978-90-481-2641-5
issn:
- 1388-4360
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Streamflow Trends in Mountainous Regions
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '12651'
abstract:
- lang: eng
text: Temperature data from three Automatic Weather Stations and twelve Temperature
Loggers are used to investigate the spatiotemporal variability of temperature
over a glacier, its main atmospheric controls, the suitability of extrapolation
techniques and their effect on melt modeling. We use data collected on Juncal
Norte Glacier, central Chile, during one ablation season. We examine temporal
and spatial variability in lapse rates (LRs), together with alternative statistical
interpolation methods. The main control over the glacier thermal regime is the
development of a katabatic boundary layer (KBL). Katabatic wind occurs at night
and in the morning and is eroded in the afternoon. LRs reveal strong diurnal variability,
with steeper LRs during the day when the katabatic wind weakens and shallower
LRs during the night and morning. We suggest that temporally variable LRs should
be used to account for the observed change. They tend to be steeper than equivalent
constant LRs, and therefore result in a reduction in simulated melt compared to
use of constant LRs when extrapolating from lower to higher elevations. In addition
to the temporal variability, the temperature-elevation relationship varies also
in space. Differences are evident between local LRs and including such variability
in melt modeling affects melt simulations. Extrapolation methods based on the
spatial variability of the observations after removal of the elevation trend,
such as Inverse Distance Weighting or Kriging, do not seem necessary for simulations
of gridded temperature data over a glacier.
article_number: D23109
article_processing_charge: No
article_type: original
author:
- first_name: L.
full_name: Petersen, L.
last_name: Petersen
- first_name: Francesca
full_name: Pellicciotti, Francesca
id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
last_name: Pellicciotti
orcid: 0000-0002-5554-8087
citation:
ama: 'Petersen L, Pellicciotti F. Spatial and temporal variability of air temperature
on a melting glacier: Atmospheric controls, extrapolation methods and their effect
on melt modeling, Juncal Norte Glacier, Chile. Journal of Geophysical Research:
Atmospheres. 2011;116(D23). doi:10.1029/2011jd015842'
apa: 'Petersen, L., & Pellicciotti, F. (2011). Spatial and temporal variability
of air temperature on a melting glacier: Atmospheric controls, extrapolation methods
and their effect on melt modeling, Juncal Norte Glacier, Chile. Journal of
Geophysical Research: Atmospheres. American Geophysical Union. https://doi.org/10.1029/2011jd015842'
chicago: 'Petersen, L., and Francesca Pellicciotti. “Spatial and Temporal Variability
of Air Temperature on a Melting Glacier: Atmospheric Controls, Extrapolation Methods
and Their Effect on Melt Modeling, Juncal Norte Glacier, Chile.” Journal of
Geophysical Research: Atmospheres. American Geophysical Union, 2011. https://doi.org/10.1029/2011jd015842.'
ieee: 'L. Petersen and F. Pellicciotti, “Spatial and temporal variability of air
temperature on a melting glacier: Atmospheric controls, extrapolation methods
and their effect on melt modeling, Juncal Norte Glacier, Chile,” Journal of
Geophysical Research: Atmospheres, vol. 116, no. D23. American Geophysical
Union, 2011.'
ista: 'Petersen L, Pellicciotti F. 2011. Spatial and temporal variability of air
temperature on a melting glacier: Atmospheric controls, extrapolation methods
and their effect on melt modeling, Juncal Norte Glacier, Chile. Journal of Geophysical
Research: Atmospheres. 116(D23), D23109.'
mla: 'Petersen, L., and Francesca Pellicciotti. “Spatial and Temporal Variability
of Air Temperature on a Melting Glacier: Atmospheric Controls, Extrapolation Methods
and Their Effect on Melt Modeling, Juncal Norte Glacier, Chile.” Journal of
Geophysical Research: Atmospheres, vol. 116, no. D23, D23109, American Geophysical
Union, 2011, doi:10.1029/2011jd015842.'
short: 'L. Petersen, F. Pellicciotti, Journal of Geophysical Research: Atmospheres
116 (2011).'
date_created: 2023-02-20T08:18:14Z
date_published: 2011-12-16T00:00:00Z
date_updated: 2024-10-14T12:01:08Z
day: '16'
doi: 10.1029/2011jd015842
extern: '1'
intvolume: ' 116'
issue: D23
keyword:
- Paleontology
- Space and Planetary Science
- Earth and Planetary Sciences (miscellaneous)
- Atmospheric Science
- Earth-Surface Processes
- Geochemistry and Petrology
- Soil Science
- Water Science and Technology
- Ecology
- Aquatic Science
- Forestry
- Oceanography
- Geophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1029/2011JD01584
month: '12'
oa: 1
oa_version: Published Version
publication: 'Journal of Geophysical Research: Atmospheres'
publication_identifier:
issn:
- 0148-0227
publication_status: published
publisher: American Geophysical Union
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Spatial and temporal variability of air temperature on a melting glacier:
Atmospheric controls, extrapolation methods and their effect on melt modeling, Juncal
Norte Glacier, Chile'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 116
year: '2011'
...
---
_id: '12652'
abstract:
- lang: eng
text: We explore the robustness and transferability of parameterizations of cloud
radiative forcing used in glacier melt models at two sites in the Swiss Alps.
We also look at the rationale behind some of the most commonly used approaches,
and explore the relationship between cloud transmittance and several standard
meteorological variables. The 2 m air-temperature diurnal range is the best predictor
of variations in cloud transmittance. However, linear and exponential parameterizations
can only explain 30–50% of the observed variance in computed cloud transmittance
factors. We examine the impact of modelled cloud transmittance factors on both
solar radiation and ablation rates computed with an enhanced temperature-index
model. The melt model performance decreases when modelled radiation is used, the
reduction being due to an underestimation of incoming solar radiation on clear-sky
days. The model works well under overcast conditions. We also seek alternatives
to the use of in situ ground data. However, outputs from an atmospheric model
(2.2 km horizontal resolution) do not seem to provide an alternative to the parameterizations
of cloud radiative forcing based on observations of air temperature at glacier
automatic weather stations. Conversely, the correct definition of overcast conditions
is important.
article_processing_charge: No
article_type: original
author:
- first_name: Francesca
full_name: Pellicciotti, Francesca
id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
last_name: Pellicciotti
orcid: 0000-0002-5554-8087
- first_name: Thomas
full_name: Raschle, Thomas
last_name: Raschle
- first_name: Thomas
full_name: Huerlimann, Thomas
last_name: Huerlimann
- first_name: Marco
full_name: Carenzo, Marco
last_name: Carenzo
- first_name: Paolo
full_name: Burlando, Paolo
last_name: Burlando
citation:
ama: 'Pellicciotti F, Raschle T, Huerlimann T, Carenzo M, Burlando P. Transmission
of solar radiation through clouds on melting glaciers: A comparison of parameterizations
and their impact on melt modelling. Journal of Glaciology. 2011;57(202):367-381.
doi:10.3189/002214311796406013'
apa: 'Pellicciotti, F., Raschle, T., Huerlimann, T., Carenzo, M., & Burlando,
P. (2011). Transmission of solar radiation through clouds on melting glaciers:
A comparison of parameterizations and their impact on melt modelling. Journal
of Glaciology. Cambridge University Press. https://doi.org/10.3189/002214311796406013'
chicago: 'Pellicciotti, Francesca, Thomas Raschle, Thomas Huerlimann, Marco Carenzo,
and Paolo Burlando. “Transmission of Solar Radiation through Clouds on Melting
Glaciers: A Comparison of Parameterizations and Their Impact on Melt Modelling.”
Journal of Glaciology. Cambridge University Press, 2011. https://doi.org/10.3189/002214311796406013.'
ieee: 'F. Pellicciotti, T. Raschle, T. Huerlimann, M. Carenzo, and P. Burlando,
“Transmission of solar radiation through clouds on melting glaciers: A comparison
of parameterizations and their impact on melt modelling,” Journal of Glaciology,
vol. 57, no. 202. Cambridge University Press, pp. 367–381, 2011.'
ista: 'Pellicciotti F, Raschle T, Huerlimann T, Carenzo M, Burlando P. 2011. Transmission
of solar radiation through clouds on melting glaciers: A comparison of parameterizations
and their impact on melt modelling. Journal of Glaciology. 57(202), 367–381.'
mla: 'Pellicciotti, Francesca, et al. “Transmission of Solar Radiation through Clouds
on Melting Glaciers: A Comparison of Parameterizations and Their Impact on Melt
Modelling.” Journal of Glaciology, vol. 57, no. 202, Cambridge University
Press, 2011, pp. 367–81, doi:10.3189/002214311796406013.'
short: F. Pellicciotti, T. Raschle, T. Huerlimann, M. Carenzo, P. Burlando, Journal
of Glaciology 57 (2011) 367–381.
date_created: 2023-02-20T08:18:21Z
date_published: 2011-03-01T00:00:00Z
date_updated: 2024-10-14T12:00:58Z
day: '01'
doi: 10.3189/002214311796406013
extern: '1'
intvolume: ' 57'
issue: '202'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.3189/002214311796406013
month: '03'
oa: 1
oa_version: Published Version
page: 367-381
publication: Journal of Glaciology
publication_identifier:
eissn:
- 1727-5652
issn:
- 0022-1430
publication_status: published
publisher: Cambridge University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Transmission of solar radiation through clouds on melting glaciers: A comparison
of parameterizations and their impact on melt modelling'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 57
year: '2011'
...
---
_id: '1299'
abstract:
- lang: eng
text: Recent experiments have shown that motion detection in Drosophila starts with
splitting the visual input into two parallel channels encoding brightness increments
(ON) or decrements (OFF). This suggests the existence of either two (ON-ON, OFF-OFF)
or four (for all pairwise interactions) separate motion detectors. To decide between
these possibilities, we stimulated flies using sequences of ON and OFF brightness
pulses while recording from motion-sensitive tangential cells. We found direction-selective
responses to sequences of same sign (ON-ON, OFF-OFF), but not of opposite sign
(ON-OFF, OFF-ON), refuting the existence of four separate detectors. Based on
further measurements, we propose a model that reproduces a variety of additional
experimental data sets, including ones that were previously interpreted as support
for four separate detectors. Our experiments and the derived model mark an important
step in guiding further dissection of the fly motion detection circuit.
author:
- first_name: Hubert
full_name: Eichner, Hubert
last_name: Eichner
- first_name: Maximilian A
full_name: Maximilian Jösch
id: 2BD278E6-F248-11E8-B48F-1D18A9856A87
last_name: Jösch
orcid: 0000-0002-3937-1330
- first_name: Bettina
full_name: Schnell, Bettina
last_name: Schnell
- first_name: Dierk
full_name: Reiff, Dierk F
last_name: Reiff
- first_name: Alexander
full_name: Borst, Alexander
last_name: Borst
citation:
ama: Eichner H, Jösch MA, Schnell B, Reiff D, Borst A. Internal structure of the
fly elementary motion detector. Neuron. 2011;70(6):1155-1164. doi:10.1016/j.neuron.2011.03.028
apa: Eichner, H., Jösch, M. A., Schnell, B., Reiff, D., & Borst, A. (2011).
Internal structure of the fly elementary motion detector. Neuron. Elsevier.
https://doi.org/10.1016/j.neuron.2011.03.028
chicago: Eichner, Hubert, Maximilian A Jösch, Bettina Schnell, Dierk Reiff, and
Alexander Borst. “Internal Structure of the Fly Elementary Motion Detector.” Neuron.
Elsevier, 2011. https://doi.org/10.1016/j.neuron.2011.03.028.
ieee: H. Eichner, M. A. Jösch, B. Schnell, D. Reiff, and A. Borst, “Internal structure
of the fly elementary motion detector,” Neuron, vol. 70, no. 6. Elsevier,
pp. 1155–1164, 2011.
ista: Eichner H, Jösch MA, Schnell B, Reiff D, Borst A. 2011. Internal structure
of the fly elementary motion detector. Neuron. 70(6), 1155–1164.
mla: Eichner, Hubert, et al. “Internal Structure of the Fly Elementary Motion Detector.”
Neuron, vol. 70, no. 6, Elsevier, 2011, pp. 1155–64, doi:10.1016/j.neuron.2011.03.028.
short: H. Eichner, M.A. Jösch, B. Schnell, D. Reiff, A. Borst, Neuron 70 (2011)
1155–1164.
date_created: 2018-12-11T11:51:14Z
date_published: 2011-06-23T00:00:00Z
date_updated: 2021-01-12T06:49:43Z
day: '23'
doi: 10.1016/j.neuron.2011.03.028
extern: 1
intvolume: ' 70'
issue: '6'
month: '06'
page: 1155 - 1164
publication: Neuron
publication_status: published
publisher: Elsevier
publist_id: '5969'
quality_controlled: 0
status: public
title: Internal structure of the fly elementary motion detector
type: journal_article
volume: 70
year: '2011'
...
---
_id: '1985'
abstract:
- lang: eng
text: |2-
In Escherichia coli, the pole-to-pole oscillation of the Min proteins directs septum formation to midcell, which is required for symmetric cell division. In vitro, protein waves emerge from the self-organization of MinD, a membrane-binding ATPase, and its activator MinE. For wave propagation, the proteins need to cycle through states of collective membrane binding and unbinding. Although MinD presumably undergoes cooperative membrane attachment, it is unclear how synchronous detachment is coordinated. We used confocal and single-molecule microscopy to elucidate the order of events during Min wave propagation. We propose that protein detachment at the rear of the wave, and the formation of the E-ring, are accomplished by two complementary processes: first, local accumulation of MinE due to rapid rebinding, leading to dynamic instability; and second, a structural change induced by membrane-interaction of MinE in an equimolar MinD-MinE (MinDE) complex, which supports the robustness of pattern formation.
acknowledgement: This work was also supported by the Max Planck Society (M.L., E.F.-F.,
P.S.).
author:
- first_name: Martin
full_name: Martin Loose
id: 462D4284-F248-11E8-B48F-1D18A9856A87
last_name: Loose
orcid: 0000-0001-7309-9724
- first_name: Elisabeth
full_name: Fischer-Friedrich, Elisabeth
last_name: Fischer Friedrich
- first_name: Christoph
full_name: Herold, Christoph
last_name: Herold
- first_name: Karsten
full_name: Kruse, Karsten
last_name: Kruse
- first_name: Petra
full_name: 'Schwille, Petra '
last_name: Schwille
citation:
ama: Loose M, Fischer Friedrich E, Herold C, Kruse K, Schwille P. Min protein patterns
emerge from rapid rebinding and membrane interaction of MinE. Nature Structural
and Molecular Biology. 2011;18(5):577-583. doi:10.1038/nsmb.2037
apa: Loose, M., Fischer Friedrich, E., Herold, C., Kruse, K., & Schwille, P.
(2011). Min protein patterns emerge from rapid rebinding and membrane interaction
of MinE. Nature Structural and Molecular Biology. Nature Publishing Group.
https://doi.org/10.1038/nsmb.2037
chicago: Loose, Martin, Elisabeth Fischer Friedrich, Christoph Herold, Karsten Kruse,
and Petra Schwille. “Min Protein Patterns Emerge from Rapid Rebinding and Membrane
Interaction of MinE.” Nature Structural and Molecular Biology. Nature Publishing
Group, 2011. https://doi.org/10.1038/nsmb.2037.
ieee: M. Loose, E. Fischer Friedrich, C. Herold, K. Kruse, and P. Schwille, “Min
protein patterns emerge from rapid rebinding and membrane interaction of MinE,”
Nature Structural and Molecular Biology, vol. 18, no. 5. Nature Publishing
Group, pp. 577–583, 2011.
ista: Loose M, Fischer Friedrich E, Herold C, Kruse K, Schwille P. 2011. Min protein
patterns emerge from rapid rebinding and membrane interaction of MinE. Nature
Structural and Molecular Biology. 18(5), 577–583.
mla: Loose, Martin, et al. “Min Protein Patterns Emerge from Rapid Rebinding and
Membrane Interaction of MinE.” Nature Structural and Molecular Biology,
vol. 18, no. 5, Nature Publishing Group, 2011, pp. 577–83, doi:10.1038/nsmb.2037.
short: M. Loose, E. Fischer Friedrich, C. Herold, K. Kruse, P. Schwille, Nature
Structural and Molecular Biology 18 (2011) 577–583.
date_created: 2018-12-11T11:55:03Z
date_published: 2011-05-01T00:00:00Z
date_updated: 2021-01-12T06:54:31Z
day: '01'
doi: 10.1038/nsmb.2037
extern: 1
intvolume: ' 18'
issue: '5'
month: '05'
page: 577 - 583
publication: Nature Structural and Molecular Biology
publication_status: published
publisher: Nature Publishing Group
publist_id: '5098'
quality_controlled: 0
status: public
title: Min protein patterns emerge from rapid rebinding and membrane interaction of
MinE
type: journal_article
volume: 18
year: '2011'
...
---
_id: '1986'
abstract:
- lang: eng
text: One of the most fundamental features of biological systems is probably their
ability to self-organize in space and time on different scales. Despite many elaborate
theoretical models of how molecular self-organization can come about, only a few
experimental systems of biological origin have so far been rigorously described,
due mostly to their inherent complexity. The most promising strategy of modern
biophysics is thus to identify minimal biological systems showing self-organized
emergent behavior. One of the best-understood examples of protein self-organization,
which has recently been successfully reconstituted in vitro, is represented by
the oscillations of the Min proteins in Escherichia coli. In this review, we summarize
the current understanding of the mechanism of Min protein self-organization in
vivo and in vitro. We discuss the potential of the Min oscillations to sense the
geometry of the cell and suggest that spontaneous protein waves could be a general
means of intracellular organization. We hypothesize that cooperative membrane
binding and unbinding, e.g., as an energy-dependent switch, may act as an important
regulatory mechanism for protein oscillations and pattern formation in the cell.
author:
- first_name: Martin
full_name: Martin Loose
id: 462D4284-F248-11E8-B48F-1D18A9856A87
last_name: Loose
orcid: 0000-0001-7309-9724
- first_name: Karsten
full_name: Kruse, Karsten
last_name: Kruse
- first_name: Petra
full_name: 'Schwille, Petra '
last_name: Schwille
citation:
ama: 'Loose M, Kruse K, Schwille P. Protein self-organization: Lessons from the
min system. Annual Review of Biophysics. 2011;40(1):315-336. doi:10.1146/annurev-biophys-042910-155332'
apa: 'Loose, M., Kruse, K., & Schwille, P. (2011). Protein self-organization:
Lessons from the min system. Annual Review of Biophysics. Annual Reviews.
https://doi.org/10.1146/annurev-biophys-042910-155332'
chicago: 'Loose, Martin, Karsten Kruse, and Petra Schwille. “Protein Self-Organization:
Lessons from the Min System.” Annual Review of Biophysics. Annual Reviews,
2011. https://doi.org/10.1146/annurev-biophys-042910-155332.'
ieee: 'M. Loose, K. Kruse, and P. Schwille, “Protein self-organization: Lessons
from the min system,” Annual Review of Biophysics, vol. 40, no. 1. Annual
Reviews, pp. 315–336, 2011.'
ista: 'Loose M, Kruse K, Schwille P. 2011. Protein self-organization: Lessons from
the min system. Annual Review of Biophysics. 40(1), 315–336.'
mla: 'Loose, Martin, et al. “Protein Self-Organization: Lessons from the Min System.”
Annual Review of Biophysics, vol. 40, no. 1, Annual Reviews, 2011, pp.
315–36, doi:10.1146/annurev-biophys-042910-155332.'
short: M. Loose, K. Kruse, P. Schwille, Annual Review of Biophysics 40 (2011) 315–336.
date_created: 2018-12-11T11:55:04Z
date_published: 2011-06-09T00:00:00Z
date_updated: 2021-01-12T06:54:31Z
day: '09'
doi: 10.1146/annurev-biophys-042910-155332
extern: 1
intvolume: ' 40'
issue: '1'
month: '06'
page: 315 - 336
publication: Annual Review of Biophysics
publication_status: published
publisher: Annual Reviews
publist_id: '5097'
quality_controlled: 0
status: public
title: 'Protein self-organization: Lessons from the min system'
type: journal_article
volume: 40
year: '2011'
...
---
_id: '2072'
abstract:
- lang: eng
text: Many species have morphologically and genetically differentiated sex chromosomes,
such as the XY pair of mammals. Y chromosomes are often highly degenerated and
carry few functional genes, so that XY males have only one copy of most Xlinked
genes (whereas females have two). As a result, chromosome-wide mechanisms of dosage
compensation, such as the mammalian X-inactivation, often evolve to reestablish
expression balance. A similar phenomenon is expected in femaleheterogametic species,
where ZW females should suffer from imbalances due to W-chromosome degeneration.
However, no global dosage compensation mechanisms have been detected in the two
independent ZW systems that have been studied systematically (birds and silkworm),
leading to the suggestion that lack of global dosage compensation may be a general
feature of female-heterogametic species. However, analyses of other independently
evolved ZW systems are required to test if this is the case. In this study, we
use published genomic and expression data to test for the presence of global dosage
compensation in Schistosoma mansoni, a trematode parasite that causes schistosomiasis
in humans. We find that Z-linked expression is reduced relative to autosomal expression
in females but not males, consistent with incomplete or localized dosage compensation.
This gives further support to the theory that female-heterogametic species may
not require global mechanisms of dosage compensation.
author:
- first_name: Beatriz
full_name: Vicoso, Beatriz
id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87
last_name: Vicoso
orcid: 0000-0002-4579-8306
- first_name: Doris
full_name: Bachtrog, Doris
last_name: Bachtrog
citation:
ama: Vicoso B, Bachtrog D. Lack of global dosage compensation in Schistosoma mansoni,
a female-heterogametic parasite. Genome Biology and Evolution. 2011;3(1):230-235.
doi:10.1093/gbe/evr010
apa: Vicoso, B., & Bachtrog, D. (2011). Lack of global dosage compensation in
Schistosoma mansoni, a female-heterogametic parasite. Genome Biology and Evolution.
Oxford University Press. https://doi.org/10.1093/gbe/evr010
chicago: Vicoso, Beatriz, and Doris Bachtrog. “Lack of Global Dosage Compensation
in Schistosoma Mansoni, a Female-Heterogametic Parasite.” Genome Biology and
Evolution. Oxford University Press, 2011. https://doi.org/10.1093/gbe/evr010.
ieee: B. Vicoso and D. Bachtrog, “Lack of global dosage compensation in Schistosoma
mansoni, a female-heterogametic parasite,” Genome Biology and Evolution,
vol. 3, no. 1. Oxford University Press, pp. 230–235, 2011.
ista: Vicoso B, Bachtrog D. 2011. Lack of global dosage compensation in Schistosoma
mansoni, a female-heterogametic parasite. Genome Biology and Evolution. 3(1),
230–235.
mla: Vicoso, Beatriz, and Doris Bachtrog. “Lack of Global Dosage Compensation in
Schistosoma Mansoni, a Female-Heterogametic Parasite.” Genome Biology and Evolution,
vol. 3, no. 1, Oxford University Press, 2011, pp. 230–35, doi:10.1093/gbe/evr010.
short: B. Vicoso, D. Bachtrog, Genome Biology and Evolution 3 (2011) 230–235.
date_created: 2018-12-11T11:55:33Z
date_published: 2011-02-11T00:00:00Z
date_updated: 2021-01-12T06:55:08Z
day: '11'
ddc:
- '570'
doi: 10.1093/gbe/evr010
extern: '1'
file:
- access_level: open_access
checksum: 7855c134436e4f6a13d63b6606d7e8dd
content_type: application/pdf
creator: dernst
date_created: 2019-05-10T07:41:28Z
date_updated: 2020-07-14T12:45:27Z
file_id: '6395'
file_name: 2011_GBE_Vicoso.pdf
file_size: 212547
relation: main_file
file_date_updated: 2020-07-14T12:45:27Z
has_accepted_license: '1'
intvolume: ' 3'
issue: '1'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc/4.0/
month: '02'
oa: 1
oa_version: Published Version
page: 230 - 235
publication: Genome Biology and Evolution
publication_status: published
publisher: Oxford University Press
publist_id: '4966'
quality_controlled: '1'
status: public
title: Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic
parasite
tmp:
image: /images/cc_by_nc.png
legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
short: CC BY-NC (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 3
year: '2011'
...
---
_id: '1973'
abstract:
- lang: eng
text: Complex I is the first and largest enzyme of the respiratory chain, coupling
electron transfer between NADH and ubiquinone to the translocation of four protons
across the membrane. It has a central role in cellular energy production and has
been implicated in many human neurodegenerative diseases. The L-shaped enzyme
consists of hydrophilic and membrane domains. Previously, we determined the structure
of the hydrophilic domain. Here we report the crystal structure of the Esherichia
coli complex I membrane domain at 3.0 Ã. resolution. It includes six subunits,
NuoL, NuoM, NuoN, NuoA, NuoJ and NuoK, with 55 transmembrane helices. The fold
of the homologous antiporter-like subunits L, M and N is novel, with two inverted
structural repeats of five transmembrane helices arranged, unusually, face-to-back.
Each repeat includes a discontinuous transmembrane helix and forms half of a channel
across the membrane. A network of conserved polar residues connects the two half-channels,
completing the proton translocation pathway. Unexpectedly, lysines rather than
carboxylate residues act as the main elements of the proton pump in these subunits.
The fourth probable proton-translocation channel is at the interface of subunits
N, K, J and A. The structure indicates that proton translocation in complex I,
uniquely, involves coordinated conformational changes in six symmetrical structural
elements.
acknowledgement: This work was funded by the Medical Research Council.
author:
- first_name: Rouslan
full_name: Efremov, Rouslan G
last_name: Efremov
- first_name: Leonid A
full_name: Leonid Sazanov
id: 338D39FE-F248-11E8-B48F-1D18A9856A87
last_name: Sazanov
orcid: 0000-0002-0977-7989
citation:
ama: Efremov R, Sazanov LA. Structure of the membrane domain of respiratory complex
i. Nature. 2011;476(7361):414-421. doi:10.1038/nature10330
apa: Efremov, R., & Sazanov, L. A. (2011). Structure of the membrane domain
of respiratory complex i. Nature. Nature Publishing Group. https://doi.org/10.1038/nature10330
chicago: Efremov, Rouslan, and Leonid A Sazanov. “Structure of the Membrane Domain
of Respiratory Complex I.” Nature. Nature Publishing Group, 2011. https://doi.org/10.1038/nature10330.
ieee: R. Efremov and L. A. Sazanov, “Structure of the membrane domain of respiratory
complex i,” Nature, vol. 476, no. 7361. Nature Publishing Group, pp. 414–421,
2011.
ista: Efremov R, Sazanov LA. 2011. Structure of the membrane domain of respiratory
complex i. Nature. 476(7361), 414–421.
mla: Efremov, Rouslan, and Leonid A. Sazanov. “Structure of the Membrane Domain
of Respiratory Complex I.” Nature, vol. 476, no. 7361, Nature Publishing
Group, 2011, pp. 414–21, doi:10.1038/nature10330.
short: R. Efremov, L.A. Sazanov, Nature 476 (2011) 414–421.
date_created: 2018-12-11T11:54:59Z
date_published: 2011-08-25T00:00:00Z
date_updated: 2021-01-12T06:54:26Z
day: '25'
doi: 10.1038/nature10330
extern: 1
intvolume: ' 476'
issue: '7361'
month: '08'
page: 414 - 421
publication: Nature
publication_status: published
publisher: Nature Publishing Group
publist_id: '5110'
quality_controlled: 0
status: public
title: Structure of the membrane domain of respiratory complex i
type: journal_article
volume: 476
year: '2011'
...
---
_id: '1974'
abstract:
- lang: eng
text: Complex I is the first enzyme of the respiratory chain and plays a central
role in cellular energy production. It has been implicated in many human neurodegenerative
diseases, as well as in ageing. One of the biggest membrane protein complexes,
it is an L-shaped assembly consisting of hydrophilic and membrane domains. Previously,
we have determined structures of the hydrophilic domain in several redox states.
Last year was marked by fascinating breakthroughs in the understanding of the
complete structure. We described the architecture of the membrane domain and of
the entire bacterial complex I. X-ray analysis of the larger mitochondrial enzyme
has also been published. The core subunits of the bacterial and mitochondrial
enzymes have remarkably similar structures. The proposed mechanism of coupling
between electron transfer and proton translocation involves long-range conformational
changes, coordinated in part by a long α-helix, akin to the coupling rod of a
steam engine.
acknowledgement: The work in authors’ laboratory was funded by the Medical Research
Council.
author:
- first_name: Rouslan
full_name: Efremov, Rouslan G
last_name: Efremov
- first_name: Leonid A
full_name: Leonid Sazanov
id: 338D39FE-F248-11E8-B48F-1D18A9856A87
last_name: Sazanov
orcid: 0000-0002-0977-7989
citation:
ama: 'Efremov R, Sazanov LA. Respiratory complex I: “steam engine” of the cell?
Current Opinion in Structural Biology. 2011;21(4):532-540. doi:10.1016/j.sbi.2011.07.002'
apa: 'Efremov, R., & Sazanov, L. A. (2011). Respiratory complex I: “steam engine”
of the cell? Current Opinion in Structural Biology. Elsevier. https://doi.org/10.1016/j.sbi.2011.07.002'
chicago: 'Efremov, Rouslan, and Leonid A Sazanov. “Respiratory Complex I: ‘steam
Engine’ of the Cell?” Current Opinion in Structural Biology. Elsevier,
2011. https://doi.org/10.1016/j.sbi.2011.07.002.'
ieee: 'R. Efremov and L. A. Sazanov, “Respiratory complex I: ‘steam engine’ of the
cell?,” Current Opinion in Structural Biology, vol. 21, no. 4. Elsevier,
pp. 532–540, 2011.'
ista: 'Efremov R, Sazanov LA. 2011. Respiratory complex I: ‘steam engine’ of the
cell? Current Opinion in Structural Biology. 21(4), 532–540.'
mla: 'Efremov, Rouslan, and Leonid A. Sazanov. “Respiratory Complex I: ‘steam Engine’
of the Cell?” Current Opinion in Structural Biology, vol. 21, no. 4, Elsevier,
2011, pp. 532–40, doi:10.1016/j.sbi.2011.07.002.'
short: R. Efremov, L.A. Sazanov, Current Opinion in Structural Biology 21 (2011)
532–540.
date_created: 2018-12-11T11:54:59Z
date_published: 2011-08-01T00:00:00Z
date_updated: 2021-01-12T06:54:27Z
day: '01'
doi: 10.1016/j.sbi.2011.07.002
extern: 1
intvolume: ' 21'
issue: '4'
month: '08'
page: 532 - 540
publication: Current Opinion in Structural Biology
publication_status: published
publisher: Elsevier
publist_id: '5111'
quality_controlled: 0
status: public
title: 'Respiratory complex I: ''steam engine'' of the cell?'
type: journal_article
volume: 21
year: '2011'
...
---
_id: '1975'
abstract:
- lang: eng
text: 'Modern α-proteobacteria are thought to be closely related to the ancient
symbiont of eukaryotes, an ancestor of mitochondria. Respiratory complex I from
α-proteobacteria and mitochondria is well conserved at the level of the 14 "core"
subunits, consistent with that notion. Mitochondrial complex I contains the core
subunits, present in all species, and up to 31 "supernumerary" subunits,
generally thought to have originated only within eukaryotic lineages. However,
the full protein composition of an α-proteobacterial complex I has not been established
previously. Here, we report the first purification and characterization of complex
I from the α-proteobacterium Paracoccus denitrificans. Single particle electron
microscopy shows that the complex has a well defined L-shape. Unexpectedly, in
addition to the 14 core subunits, the enzyme also contains homologues of three
supernumerary mitochondrial subunits as follows: B17.2, AQDQ/18, and 13 kDa (bovine
nomenclature). This finding suggests that evolution of complex I via addition
of supernumerary or "accessory" subunits started before the original
endosymbiotic event that led to the creation of the eukaryotic cell. It also provides
further confirmation that α-proteobacteria are the closest extant relatives of
mitochondria.'
acknowledgement: 'This work was supported by the Medical Research Council. '
author:
- first_name: Chui
full_name: Yip, Chui Y
last_name: Yip
- first_name: Michael
full_name: Harbour, Michael E
last_name: Harbour
- first_name: Kamburapola
full_name: Jayawardena, Kamburapola G
last_name: Jayawardena
- first_name: Ian
full_name: Fearnley, Ian M
last_name: Fearnley
- first_name: Leonid A
full_name: Leonid Sazanov
id: 338D39FE-F248-11E8-B48F-1D18A9856A87
last_name: Sazanov
orcid: 0000-0002-0977-7989
citation:
ama: Yip C, Harbour M, Jayawardena K, Fearnley I, Sazanov LA. Evolution of respiratory
complex I "Supernumerary" subunits are present in the α-proteobacterial
enzyme. Journal of Biological Chemistry. 2011;286(7):5023-5033. doi:10.1074/jbc.M110.194993
apa: Yip, C., Harbour, M., Jayawardena, K., Fearnley, I., & Sazanov, L. A. (2011).
Evolution of respiratory complex I "Supernumerary" subunits
are present in the α-proteobacterial enzyme. Journal of Biological Chemistry.
American Society for Biochemistry and Molecular Biology. https://doi.org/10.1074/jbc.M110.194993
chicago: Yip, Chui, Michael Harbour, Kamburapola Jayawardena, Ian Fearnley, and
Leonid A Sazanov. “Evolution of Respiratory Complex I "Supernumerary"
Subunits Are Present in the α-Proteobacterial Enzyme.” Journal of Biological
Chemistry. American Society for Biochemistry and Molecular Biology, 2011.
https://doi.org/10.1074/jbc.M110.194993.
ieee: C. Yip, M. Harbour, K. Jayawardena, I. Fearnley, and L. A. Sazanov, “Evolution
of respiratory complex I "Supernumerary" subunits are present
in the α-proteobacterial enzyme,” Journal of Biological Chemistry, vol.
286, no. 7. American Society for Biochemistry and Molecular Biology, pp. 5023–5033,
2011.
ista: Yip C, Harbour M, Jayawardena K, Fearnley I, Sazanov LA. 2011. Evolution of
respiratory complex I "Supernumerary" subunits are present in
the α-proteobacterial enzyme. Journal of Biological Chemistry. 286(7), 5023–5033.
mla: Yip, Chui, et al. “Evolution of Respiratory Complex I "Supernumerary"
Subunits Are Present in the α-Proteobacterial Enzyme.” Journal of Biological
Chemistry, vol. 286, no. 7, American Society for Biochemistry and Molecular
Biology, 2011, pp. 5023–33, doi:10.1074/jbc.M110.194993.
short: C. Yip, M. Harbour, K. Jayawardena, I. Fearnley, L.A. Sazanov, Journal of
Biological Chemistry 286 (2011) 5023–5033.
date_created: 2018-12-11T11:55:00Z
date_published: 2011-02-18T00:00:00Z
date_updated: 2021-01-12T06:54:27Z
day: '18'
doi: 10.1074/jbc.M110.194993
extern: 1
intvolume: ' 286'
issue: '7'
month: '02'
page: 5023 - 5033
publication: Journal of Biological Chemistry
publication_status: published
publisher: American Society for Biochemistry and Molecular Biology
publist_id: '5112'
quality_controlled: 0
status: public
title: Evolution of respiratory complex I "Supernumerary" subunits are present
in the α-proteobacterial enzyme
type: journal_article
volume: 286
year: '2011'
...
---
_id: '10907'
abstract:
- lang: eng
text: This paper presents a method to create a model of an articulated object using
the planar motion in an initialization video. The model consists of rigid parts
connected by points of articulation. The rigid parts are described by the positions
of salient feature-points tracked throughout the video. Following a filtering
step that identifies points that belong to different objects, rigid parts are
found by a grouping process in a graph pyramid. Valid articulation points are
selected by verifying multiple hypotheses for each pair of parts.
acknowledgement: This work has been partially supported by the Austrian Science Fund
under grants S9103-N13 and P18716-N13.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Nicole M.
full_name: Artner, Nicole M.
last_name: Artner
- first_name: Adrian
full_name: Ion, Adrian
id: 29F89302-F248-11E8-B48F-1D18A9856A87
last_name: Ion
- first_name: Walter G.
full_name: Kropatsch, Walter G.
last_name: Kropatsch
citation:
ama: 'Artner NM, Ion A, Kropatsch WG. Spatio-temporal extraction of articulated
models in a graph pyramid. In: Jiang X, Ferrer M, Torsello A, eds. Graph-Based
Representations in Pattern Recognition. Vol 6658. LNIP. Berlin, Heidelberg:
Springer; 2011:215-224. doi:10.1007/978-3-642-20844-7_22'
apa: 'Artner, N. M., Ion, A., & Kropatsch, W. G. (2011). Spatio-temporal extraction
of articulated models in a graph pyramid. In X. Jiang, M. Ferrer, & A. Torsello
(Eds.), Graph-Based Representations in Pattern Recognition (Vol. 6658,
pp. 215–224). Berlin, Heidelberg: Springer. https://doi.org/10.1007/978-3-642-20844-7_22'
chicago: 'Artner, Nicole M., Adrian Ion, and Walter G. Kropatsch. “Spatio-Temporal
Extraction of Articulated Models in a Graph Pyramid.” In Graph-Based Representations
in Pattern Recognition, edited by Xiaoyi Jiang, Miquel Ferrer, and Andrea
Torsello, 6658:215–24. LNIP. Berlin, Heidelberg: Springer, 2011. https://doi.org/10.1007/978-3-642-20844-7_22.'
ieee: N. M. Artner, A. Ion, and W. G. Kropatsch, “Spatio-temporal extraction of
articulated models in a graph pyramid,” in Graph-Based Representations in Pattern
Recognition, Münster, Germany, 2011, vol. 6658, pp. 215–224.
ista: 'Artner NM, Ion A, Kropatsch WG. 2011. Spatio-temporal extraction of articulated
models in a graph pyramid. Graph-Based Representations in Pattern Recognition.
GbRPR: Graph-based Representations in Pattern RecognitionLNIP, LNCS, vol. 6658,
215–224.'
mla: Artner, Nicole M., et al. “Spatio-Temporal Extraction of Articulated Models
in a Graph Pyramid.” Graph-Based Representations in Pattern Recognition,
edited by Xiaoyi Jiang et al., vol. 6658, Springer, 2011, pp. 215–24, doi:10.1007/978-3-642-20844-7_22.
short: N.M. Artner, A. Ion, W.G. Kropatsch, in:, X. Jiang, M. Ferrer, A. Torsello
(Eds.), Graph-Based Representations in Pattern Recognition, Springer, Berlin,
Heidelberg, 2011, pp. 215–224.
conference:
end_date: 2011-05-20
location: Münster, Germany
name: 'GbRPR: Graph-based Representations in Pattern Recognition'
start_date: 2011-05-18
corr_author: '1'
date_created: 2022-03-21T08:08:35Z
date_published: 2011-06-01T00:00:00Z
date_updated: 2024-10-09T21:02:32Z
day: '01'
department:
- _id: HeEd
doi: 10.1007/978-3-642-20844-7_22
editor:
- first_name: Xiaoyi
full_name: Jiang, Xiaoyi
last_name: Jiang
- first_name: Miquel
full_name: Ferrer, Miquel
last_name: Ferrer
- first_name: Andrea
full_name: Torsello, Andrea
last_name: Torsello
intvolume: ' 6658'
language:
- iso: eng
month: '06'
oa_version: None
page: 215-224
place: Berlin, Heidelberg
publication: Graph-Based Representations in Pattern Recognition
publication_identifier:
eisbn:
- '9783642208447'
eissn:
- 1611-3349
isbn:
- '9783642208430'
issn:
- 0302-9743
publication_status: published
publisher: Springer
quality_controlled: '1'
scopus_import: '1'
series_title: LNIP
status: public
title: Spatio-temporal extraction of articulated models in a graph pyramid
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 6658
year: '2011'
...
---
_id: '11094'
abstract:
- lang: eng
text: Nuclear pore complexes (NPCs) assemble at the end of mitosis during nuclear
envelope (NE) reformation and into an intact NE as cells progress through interphase.
Although recent studies have shown that NPC formation occurs by two different
molecular mechanisms at two distinct cell cycle stages, little is known about
the molecular players that mediate the fusion of the outer and inner nuclear membranes
to form pores. In this paper, we provide evidence that the transmembrane nucleoporin
(Nup), POM121, but not the Nup107–160 complex, is present at new pore assembly
sites at a time that coincides with inner nuclear membrane (INM) and outer nuclear
membrane (ONM) fusion. Overexpression of POM121 resulted in juxtaposition of the
INM and ONM. Additionally, Sun1, an INM protein that is known to interact with
the cytoskeleton, was specifically required for interphase assembly and localized
with POM121 at forming pores. We propose a model in which POM121 and Sun1 interact
transiently to promote early steps of interphase NPC assembly.
article_processing_charge: No
article_type: original
author:
- first_name: Jessica A.
full_name: Talamas, Jessica A.
last_name: Talamas
- first_name: Martin W
full_name: HETZER, Martin W
id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
last_name: HETZER
orcid: 0000-0002-2111-992X
citation:
ama: Talamas JA, Hetzer M. POM121 and Sun1 play a role in early steps of interphase
NPC assembly. Journal of Cell Biology. 2011;194(1):27-37. doi:10.1083/jcb.201012154
apa: Talamas, J. A., & Hetzer, M. (2011). POM121 and Sun1 play a role in early
steps of interphase NPC assembly. Journal of Cell Biology. Rockefeller
University Press. https://doi.org/10.1083/jcb.201012154
chicago: Talamas, Jessica A., and Martin Hetzer. “POM121 and Sun1 Play a Role in
Early Steps of Interphase NPC Assembly.” Journal of Cell Biology. Rockefeller
University Press, 2011. https://doi.org/10.1083/jcb.201012154.
ieee: J. A. Talamas and M. Hetzer, “POM121 and Sun1 play a role in early steps of
interphase NPC assembly,” Journal of Cell Biology, vol. 194, no. 1. Rockefeller
University Press, pp. 27–37, 2011.
ista: Talamas JA, Hetzer M. 2011. POM121 and Sun1 play a role in early steps of
interphase NPC assembly. Journal of Cell Biology. 194(1), 27–37.
mla: Talamas, Jessica A., and Martin Hetzer. “POM121 and Sun1 Play a Role in Early
Steps of Interphase NPC Assembly.” Journal of Cell Biology, vol. 194, no.
1, Rockefeller University Press, 2011, pp. 27–37, doi:10.1083/jcb.201012154.
short: J.A. Talamas, M. Hetzer, Journal of Cell Biology 194 (2011) 27–37.
date_created: 2022-04-07T07:52:18Z
date_published: 2011-07-04T00:00:00Z
date_updated: 2024-10-14T11:26:10Z
day: '04'
doi: 10.1083/jcb.201012154
extern: '1'
external_id:
pmid:
- '21727197'
intvolume: ' 194'
issue: '1'
keyword:
- Cell Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1083/jcb.201012154
month: '07'
oa: 1
oa_version: Published Version
page: 27-37
pmid: 1
publication: Journal of Cell Biology
publication_identifier:
eissn:
- 1540-8140
issn:
- 0021-9525
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: POM121 and Sun1 play a role in early steps of interphase NPC assembly
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 194
year: '2011'
...
---
_id: '11095'
article_processing_charge: No
article_type: letter_note
author:
- first_name: Martin W
full_name: HETZER, Martin W
id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
last_name: HETZER
orcid: 0000-0002-2111-992X
- first_name: Giacomo
full_name: Cavalli, Giacomo
last_name: Cavalli
citation:
ama: Hetzer M, Cavalli G. Editorial overview. Current Opinion in Cell Biology.
2011;23(3):255-257. doi:10.1016/j.ceb.2011.04.013
apa: Hetzer, M., & Cavalli, G. (2011). Editorial overview. Current Opinion
in Cell Biology. Elsevier. https://doi.org/10.1016/j.ceb.2011.04.013
chicago: Hetzer, Martin, and Giacomo Cavalli. “Editorial Overview.” Current Opinion
in Cell Biology. Elsevier, 2011. https://doi.org/10.1016/j.ceb.2011.04.013.
ieee: M. Hetzer and G. Cavalli, “Editorial overview,” Current Opinion in Cell
Biology, vol. 23, no. 3. Elsevier, pp. 255–257, 2011.
ista: Hetzer M, Cavalli G. 2011. Editorial overview. Current Opinion in Cell Biology.
23(3), 255–257.
mla: Hetzer, Martin, and Giacomo Cavalli. “Editorial Overview.” Current Opinion
in Cell Biology, vol. 23, no. 3, Elsevier, 2011, pp. 255–57, doi:10.1016/j.ceb.2011.04.013.
short: M. Hetzer, G. Cavalli, Current Opinion in Cell Biology 23 (2011) 255–257.
date_created: 2022-04-07T07:52:27Z
date_published: 2011-06-01T00:00:00Z
date_updated: 2024-10-14T11:26:20Z
day: '01'
doi: 10.1016/j.ceb.2011.04.013
extern: '1'
external_id:
pmid:
- '21592757'
intvolume: ' 23'
issue: '3'
keyword:
- Cell Biology
language:
- iso: eng
month: '06'
oa_version: None
page: 255-257
pmid: 1
publication: Current Opinion in Cell Biology
publication_identifier:
issn:
- 0955-0674
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Editorial overview
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 23
year: '2011'
...
---
_id: '11096'
abstract:
- lang: eng
text: As the gatekeepers of the eukaryotic cell nucleus, nuclear pore complexes
(NPCs) mediate all molecular trafficking between the nucleoplasm and the cytoplasm.
In recent years, transport-independent functions of NPC components, nucleoporins,
have been identified including roles in chromatin organization and gene regulation.
Here, we summarize our current view of the NPC as a dynamic hub for the integration
of chromatin regulation and nuclear trafficking and discuss the functional interplay
between nucleoporins and the nuclear genome.
article_processing_charge: No
article_type: original
author:
- first_name: Yun
full_name: Liang, Yun
last_name: Liang
- first_name: Martin W
full_name: HETZER, Martin W
id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
last_name: HETZER
orcid: 0000-0002-2111-992X
citation:
ama: Liang Y, Hetzer M. Functional interactions between nucleoporins and chromatin.
Current Opinion in Cell Biology. 2011;23(1):65-70. doi:10.1016/j.ceb.2010.09.008
apa: Liang, Y., & Hetzer, M. (2011). Functional interactions between nucleoporins
and chromatin. Current Opinion in Cell Biology. Elsevier. https://doi.org/10.1016/j.ceb.2010.09.008
chicago: Liang, Yun, and Martin Hetzer. “Functional Interactions between Nucleoporins
and Chromatin.” Current Opinion in Cell Biology. Elsevier, 2011. https://doi.org/10.1016/j.ceb.2010.09.008.
ieee: Y. Liang and M. Hetzer, “Functional interactions between nucleoporins and
chromatin,” Current Opinion in Cell Biology, vol. 23, no. 1. Elsevier,
pp. 65–70, 2011.
ista: Liang Y, Hetzer M. 2011. Functional interactions between nucleoporins and
chromatin. Current Opinion in Cell Biology. 23(1), 65–70.
mla: Liang, Yun, and Martin Hetzer. “Functional Interactions between Nucleoporins
and Chromatin.” Current Opinion in Cell Biology, vol. 23, no. 1, Elsevier,
2011, pp. 65–70, doi:10.1016/j.ceb.2010.09.008.
short: Y. Liang, M. Hetzer, Current Opinion in Cell Biology 23 (2011) 65–70.
date_created: 2022-04-07T07:52:37Z
date_published: 2011-02-01T00:00:00Z
date_updated: 2024-10-14T11:26:31Z
day: '01'
doi: 10.1016/j.ceb.2010.09.008
extern: '1'
external_id:
pmid:
- '21030234'
intvolume: ' 23'
issue: '1'
keyword:
- Cell Biology
language:
- iso: eng
month: '02'
oa_version: None
page: 65-70
pmid: 1
publication: Current Opinion in Cell Biology
publication_identifier:
issn:
- 0955-0674
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Functional interactions between nucleoporins and chromatin
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 23
year: '2011'
...
---
_id: '11100'
abstract:
- lang: eng
text: Eukaryotic cell function depends on the physical separation of nucleoplasmic
and cytoplasmic components by the nuclear envelope (NE). Molecular communication
between the two compartments involves active, signal-mediated trafficking, a function
that is exclusively performed by nuclear pore complexes (NPCs). The individual
NPC components and the mechanisms that are involved in nuclear trafficking are
well documented and have become textbook knowledge. However, in addition to their
roles as nuclear gatekeepers, NPC components-nucleoporins-have been shown to have
critical roles in chromatin organization and gene regulation. These findings have
sparked new enthusiasm to study the roles of this multiprotein complex in nuclear
organization and explore novel functions that in some cases appear to go beyond
a role in transport. Here, we discuss our present view of NPC biogenesis, which
is tightly linked to proper cell cycle progression and cell differentiation. In
addition, we summarize new data suggesting that NPCs represent dynamic hubs for
the integration of gene regulation and nuclear transport processes.
article_processing_charge: No
article_type: original
author:
- first_name: M.
full_name: Capelson, M.
last_name: Capelson
- first_name: C.
full_name: Doucet, C.
last_name: Doucet
- first_name: Martin W
full_name: HETZER, Martin W
id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
last_name: HETZER
orcid: 0000-0002-2111-992X
citation:
ama: 'Capelson M, Doucet C, Hetzer M. Nuclear pore complexes: Guardians of the nuclear
genome. Cold Spring Harbor Symposia on Quantitative Biology. 2011;75:585-597.
doi:10.1101/sqb.2010.75.059'
apa: 'Capelson, M., Doucet, C., & Hetzer, M. (2011). Nuclear pore complexes:
Guardians of the nuclear genome. Cold Spring Harbor Symposia on Quantitative
Biology. Cold Spring Harbor Laboratory Press. https://doi.org/10.1101/sqb.2010.75.059'
chicago: 'Capelson, M., C. Doucet, and Martin Hetzer. “Nuclear Pore Complexes: Guardians
of the Nuclear Genome.” Cold Spring Harbor Symposia on Quantitative Biology.
Cold Spring Harbor Laboratory Press, 2011. https://doi.org/10.1101/sqb.2010.75.059.'
ieee: 'M. Capelson, C. Doucet, and M. Hetzer, “Nuclear pore complexes: Guardians
of the nuclear genome,” Cold Spring Harbor Symposia on Quantitative Biology,
vol. 75. Cold Spring Harbor Laboratory Press, pp. 585–597, 2011.'
ista: 'Capelson M, Doucet C, Hetzer M. 2011. Nuclear pore complexes: Guardians of
the nuclear genome. Cold Spring Harbor Symposia on Quantitative Biology. 75, 585–597.'
mla: 'Capelson, M., et al. “Nuclear Pore Complexes: Guardians of the Nuclear Genome.”
Cold Spring Harbor Symposia on Quantitative Biology, vol. 75, Cold Spring
Harbor Laboratory Press, 2011, pp. 585–97, doi:10.1101/sqb.2010.75.059.'
short: M. Capelson, C. Doucet, M. Hetzer, Cold Spring Harbor Symposia on Quantitative
Biology 75 (2011) 585–597.
date_created: 2022-04-07T07:53:18Z
date_published: 2011-04-18T00:00:00Z
date_updated: 2024-10-14T11:27:48Z
day: '18'
doi: 10.1101/sqb.2010.75.059
extern: '1'
external_id:
pmid:
- '21502404'
intvolume: ' 75'
keyword:
- Genetics
- Molecular Biology
- Biochemistry
language:
- iso: eng
month: '04'
oa_version: None
page: 585-597
pmid: 1
publication: Cold Spring Harbor Symposia on Quantitative Biology
publication_identifier:
isbn:
- '9781936113071'
issn:
- 0091-7451
- 1943-4456
publication_status: published
publisher: Cold Spring Harbor Laboratory Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Nuclear pore complexes: Guardians of the nuclear genome'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 75
year: '2011'
...
---
_id: '112'
abstract:
- lang: eng
text: Particle beams are important tools for probing atomic and molecular interactions.
Here we demonstrate that particle beams also offer a unique opportunity to investigate
interactions in macroscopic systems, such as granular media. Motivated by recent
experiments on streams of grains that exhibit liquid-like breakup into droplets,
we use molecular dynamics simulations to investigate the evolution of a dense
stream of macroscopic spheres accelerating out of an opening at the bottom of
a reservoir. We show how nanoscale details associated with energy dissipation
during collisions modify the stream\'s macroscopic behavior. We find that inelastic
collisions collimate the stream, while the presence of short-range attractive
interactions drives structure formation. Parameterizing the collision dynamics
by the coefficient of restitution (i.e., the ratio of relative velocities before
and after impact) and the strength of the cohesive interaction, we map out a spectrum
of behaviors that ranges from gaslike jets in which all grains drift apart to
liquid-like streams that break into large droplets containing hundreds of grains.
We also find a new, intermediate regime in which small aggregates form by capture
from the gas phase, similar to what can be observed in molecular beams. Our results
show that nearly all aspects of stream behavior are closely related to the velocity
gradient associated with vertical free fall. Led by this observation, we propose
a simple energy balance model to explain the droplet formation process. The qualitative
as well as many quantitative features of the simulations and the model compare
well with available experimental data and provide a first quantitative measure
of the role of attractions in freely cooling granular streams.
acknowledgement: This work was supported by the NSF through CBET-0933242. We acknowledge
use of shared facilities provided by the Keck Facility for Ultrafast Imaging at
the University of Chicago and by the Chicago MRSEC through NSF DMR-0820054. Software
support by Itasca Consulting Group, Inc., under the Itasca Educational Partnership
is gratefully acknowledged. H.G. thanks the German-American Fulbright Commission
for fellowship support during his stay at the University of Chicago.
article_number: '051302'
arxiv: 1
author:
- first_name: Scott R
full_name: Waitukaitis, Scott R
id: 3A1FFC16-F248-11E8-B48F-1D18A9856A87
last_name: Waitukaitis
orcid: 0000-0002-2299-3176
- first_name: Helge
full_name: Grütjen, Helge
last_name: Grütjen
- first_name: John
full_name: Royer, John
last_name: Royer
- first_name: Heinrich
full_name: Jaeger, Heinrich
last_name: Jaeger
citation:
ama: Waitukaitis SR, Grütjen H, Royer J, Jaeger H. Droplet and cluster formation
in freely falling granular streams. Physical Review E. 2011;83(5). doi:10.1103/PhysRevE.83.051302
apa: Waitukaitis, S. R., Grütjen, H., Royer, J., & Jaeger, H. (2011). Droplet
and cluster formation in freely falling granular streams. Physical Review E.
American Physical Society. https://doi.org/10.1103/PhysRevE.83.051302
chicago: Waitukaitis, Scott R, Helge Grütjen, John Royer, and Heinrich Jaeger. “Droplet
and Cluster Formation in Freely Falling Granular Streams.” Physical Review
E. American Physical Society, 2011. https://doi.org/10.1103/PhysRevE.83.051302.
ieee: S. R. Waitukaitis, H. Grütjen, J. Royer, and H. Jaeger, “Droplet and cluster
formation in freely falling granular streams,” Physical Review E, vol.
83, no. 5. American Physical Society, 2011.
ista: Waitukaitis SR, Grütjen H, Royer J, Jaeger H. 2011. Droplet and cluster formation
in freely falling granular streams. Physical Review E. 83(5), 051302.
mla: Waitukaitis, Scott R., et al. “Droplet and Cluster Formation in Freely Falling
Granular Streams.” Physical Review E, vol. 83, no. 5, 051302, American
Physical Society, 2011, doi:10.1103/PhysRevE.83.051302.
short: S.R. Waitukaitis, H. Grütjen, J. Royer, H. Jaeger, Physical Review E 83 (2011).
date_created: 2018-12-11T11:44:41Z
date_published: 2011-05-12T00:00:00Z
date_updated: 2021-01-12T06:48:25Z
day: '12'
doi: 10.1103/PhysRevE.83.051302
extern: '1'
external_id:
arxiv:
- '1006.1371'
intvolume: ' 83'
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1006.1371
month: '05'
oa: 1
oa_version: Preprint
publication: Physical Review E
publication_status: published
publisher: American Physical Society
publist_id: '7942'
quality_controlled: '1'
status: public
title: Droplet and cluster formation in freely falling granular streams
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 83
year: '2011'
...
---
_id: '10389'
abstract:
- lang: eng
text: We perform numerical simulations to study self-assembly of nanoparticles mediated
by an elastic planar surface. We show how the nontrivial elastic response to deformations
of these surfaces leads to anisotropic interactions between the particles resulting
in aggregates having different geometrical features. The morphology of the patterns
can be controlled by the mechanical properties of the surface and the strength
of the particle adhesion. We use simple scaling arguments to understand the formation
of the different structures, and we show how the adhering particles can cause
the underlying elastic substrate to wrinkle if two of its opposite edges are clamped.
Finally, we discuss the implications of our results and suggest how elastic surfaces
could be used in nanofabrication.
acknowledgement: This work was supported by the National Science Foundation under
Career Grant No. DMR-0846426. We thank Josep C. Pàmies and William L. Miller for
helpful discussions.
article_number: '8324'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Anđela
full_name: Šarić, Anđela
id: bf63d406-f056-11eb-b41d-f263a6566d8b
last_name: Šarić
orcid: 0000-0002-7854-2139
- first_name: Angelo
full_name: Cacciuto, Angelo
last_name: Cacciuto
citation:
ama: Šarić A, Cacciuto A. Soft elastic surfaces as a platform for particle self-assembly.
Soft Matter. 2011;7(18). doi:10.1039/c1sm05773a
apa: Šarić, A., & Cacciuto, A. (2011). Soft elastic surfaces as a platform for
particle self-assembly. Soft Matter. Royal Society of Chemistry. https://doi.org/10.1039/c1sm05773a
chicago: Šarić, Anđela, and Angelo Cacciuto. “Soft Elastic Surfaces as a Platform
for Particle Self-Assembly.” Soft Matter. Royal Society of Chemistry, 2011.
https://doi.org/10.1039/c1sm05773a.
ieee: A. Šarić and A. Cacciuto, “Soft elastic surfaces as a platform for particle
self-assembly,” Soft Matter, vol. 7, no. 18. Royal Society of Chemistry,
2011.
ista: Šarić A, Cacciuto A. 2011. Soft elastic surfaces as a platform for particle
self-assembly. Soft Matter. 7(18), 8324.
mla: Šarić, Anđela, and Angelo Cacciuto. “Soft Elastic Surfaces as a Platform for
Particle Self-Assembly.” Soft Matter, vol. 7, no. 18, 8324, Royal Society
of Chemistry, 2011, doi:10.1039/c1sm05773a.
short: A. Šarić, A. Cacciuto, Soft Matter 7 (2011).
date_created: 2021-11-29T14:33:18Z
date_published: 2011-08-08T00:00:00Z
date_updated: 2021-11-29T15:12:10Z
day: '08'
doi: 10.1039/c1sm05773a
extern: '1'
external_id:
arxiv:
- '1106.2995'
intvolume: ' 7'
issue: '18'
keyword:
- condensed matter physics
- general chemistry
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1106.2995
month: '08'
oa: 1
oa_version: Preprint
publication: Soft Matter
publication_identifier:
eissn:
- 1744-6848
issn:
- 1744-683X
publication_status: published
publisher: Royal Society of Chemistry
quality_controlled: '1'
scopus_import: '1'
status: public
title: Soft elastic surfaces as a platform for particle self-assembly
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 7
year: '2011'
...