---
_id: '5381'
abstract:
- lang: eng
  text: "In two-player finite-state stochastic games of partial obser- vation on graphs,
    in every state of the graph, the players simultaneously choose an action, and
    their joint actions determine a probability distri- bution over the successor
    states. The game is played for infinitely many rounds and thus the players construct
    an infinite path in the graph. We consider reachability objectives where the first
    player tries to ensure a target state to be visited almost-surely (i.e., with
    probability 1) or pos- itively (i.e., with positive probability), no matter the
    strategy of the second player.\r\n\r\nWe classify such games according to the
    information and to the power of randomization available to the players. On the
    basis of information, the game can be one-sided with either (a) player 1, or (b)
    player 2 having partial observation (and the other player has perfect observation),
    or two- sided with (c) both players having partial observation. On the basis of
    randomization, (a) the players may not be allowed to use randomization (pure strategies),
    or (b) they may choose a probability distribution over actions but the actual
    random choice is external and not visible to the player (actions invisible), or
    (c) they may use full randomization.\r\n\r\nOur main results for pure strategies
    are as follows: (1) For one-sided games with player 2 perfect observation we show
    that (in contrast to full randomized strategies) belief-based (subset-construction
    based) strate- gies are not sufficient, and present an exponential upper bound
    on mem- ory both for almost-sure and positive winning strategies; we show that
    the problem of deciding the existence of almost-sure and positive winning strategies
    for player 1 is EXPTIME-complete and present symbolic algo- rithms that avoid
    the explicit exponential construction. (2) For one-sided games with player 1 perfect
    observation we show that non-elementary memory is both necessary and sufficient
    for both almost-sure and posi- tive winning strategies. (3) We show that for the
    general (two-sided) case finite-memory strategies are sufficient for both positive
    and almost-sure winning, and at least non-elementary memory is required. We establish
    the equivalence of the almost-sure winning problems for pure strategies and for
    randomized strategies with actions invisible. Our equivalence re- sult exhibit
    serious flaws in previous results in the literature: we show a non-elementary
    memory lower bound for almost-sure winning whereas an exponential upper bound
    was previously claimed."
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Laurent
  full_name: Doyen, Laurent
  last_name: Doyen
citation:
  ama: 'Chatterjee K, Doyen L. <i>Partial-Observation Stochastic Games: How to Win
    When Belief Fails</i>. IST Austria; 2011. doi:<a href="https://doi.org/10.15479/AT:IST-2011-0007">10.15479/AT:IST-2011-0007</a>'
  apa: 'Chatterjee, K., &#38; Doyen, L. (2011). <i>Partial-observation stochastic
    games: How to win when belief fails</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2011-0007">https://doi.org/10.15479/AT:IST-2011-0007</a>'
  chicago: 'Chatterjee, Krishnendu, and Laurent Doyen. <i>Partial-Observation Stochastic
    Games: How to Win When Belief Fails</i>. IST Austria, 2011. <a href="https://doi.org/10.15479/AT:IST-2011-0007">https://doi.org/10.15479/AT:IST-2011-0007</a>.'
  ieee: 'K. Chatterjee and L. Doyen, <i>Partial-observation stochastic games: How
    to win when belief fails</i>. IST Austria, 2011.'
  ista: 'Chatterjee K, Doyen L. 2011. Partial-observation stochastic games: How to
    win when belief fails, IST Austria, 43p.'
  mla: 'Chatterjee, Krishnendu, and Laurent Doyen. <i>Partial-Observation Stochastic
    Games: How to Win When Belief Fails</i>. IST Austria, 2011, doi:<a href="https://doi.org/10.15479/AT:IST-2011-0007">10.15479/AT:IST-2011-0007</a>.'
  short: 'K. Chatterjee, L. Doyen, Partial-Observation Stochastic Games: How to Win
    When Belief Fails, IST Austria, 2011.'
date_created: 2018-12-12T11:39:00Z
date_published: 2011-07-05T00:00:00Z
date_updated: 2025-09-30T08:08:45Z
day: '05'
ddc:
- '000'
- '005'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2011-0007
file:
- access_level: open_access
  checksum: 06bf6dfc97f6006e3fd0e9a3f31bc961
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:27Z
  date_updated: 2020-07-14T12:46:39Z
  file_id: '5488'
  file_name: IST-2011-0007_IST-2011-0007.pdf
  file_size: 574055
  relation: main_file
file_date_updated: 2020-07-14T12:46:39Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: '43'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '17'
related_material:
  record:
  - id: '1903'
    relation: later_version
    status: public
  - id: '2211'
    relation: later_version
    status: public
  - id: '2955'
    relation: later_version
    status: public
status: public
title: 'Partial-observation stochastic games: How to win when belief fails'
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '5382'
abstract:
- lang: eng
  text: 'We consider two-player stochastic games played on a finite state space for
    an infinite num- ber of rounds. The games are concurrent: in each round, the two
    players (player 1 and player 2) choose their moves independently and simultaneously;
    the current state and the two moves determine a probability distribution over
    the successor states. We also consider the important special case of turn-based
    stochastic games where players make moves in turns, rather than concurrently.
    We study concurrent games with ω-regular winning conditions specified as parity
    objectives. The value for player 1 for a parity objective is the maximal probability
    with which the player can guarantee the satisfaction of the objective against
    all strategies of the opponent. We study the problem of continuity and robustness
    of the value function in concurrent and turn-based stochastic parity games with
    respect to imprecision in the transition probabilities. We present quantitative
    bounds on the difference of the value function (in terms of the imprecision of
    the transition probabilities) and show the value continuity for structurally equivalent
    concurrent games (two games are structurally equivalent if the support of the
    transition func- tion is same and the probabilities differ). We also show robustness
    of optimal strategies for structurally equivalent turn-based stochastic parity
    games. Finally we show that the value continuity property breaks without the structurally
    equivalent assumption (even for Markov chains) and show that our quantitative
    bound is asymptotically optimal. Hence our results are tight (the assumption is
    both necessary and sufficient) and optimal (our quantitative bound is asymptotically
    optimal).'
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
citation:
  ama: Chatterjee K. <i>Robustness of Structurally Equivalent Concurrent Parity Games</i>.
    IST Austria; 2011. doi:<a href="https://doi.org/10.15479/AT:IST-2011-0006">10.15479/AT:IST-2011-0006</a>
  apa: Chatterjee, K. (2011). <i>Robustness of structurally equivalent concurrent
    parity games</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2011-0006">https://doi.org/10.15479/AT:IST-2011-0006</a>
  chicago: Chatterjee, Krishnendu. <i>Robustness of Structurally Equivalent Concurrent
    Parity Games</i>. IST Austria, 2011. <a href="https://doi.org/10.15479/AT:IST-2011-0006">https://doi.org/10.15479/AT:IST-2011-0006</a>.
  ieee: K. Chatterjee, <i>Robustness of structurally equivalent concurrent parity
    games</i>. IST Austria, 2011.
  ista: Chatterjee K. 2011. Robustness of structurally equivalent concurrent parity
    games, IST Austria, 18p.
  mla: Chatterjee, Krishnendu. <i>Robustness of Structurally Equivalent Concurrent
    Parity Games</i>. IST Austria, 2011, doi:<a href="https://doi.org/10.15479/AT:IST-2011-0006">10.15479/AT:IST-2011-0006</a>.
  short: K. Chatterjee, Robustness of Structurally Equivalent Concurrent Parity Games,
    IST Austria, 2011.
date_created: 2018-12-12T11:39:00Z
date_published: 2011-06-27T00:00:00Z
date_updated: 2025-04-15T08:12:24Z
day: '27'
ddc:
- '000'
- '005'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2011-0006
file:
- access_level: open_access
  checksum: 1322b652d6ab07eb5248298a3f91c1cf
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:54:24Z
  date_updated: 2020-07-14T12:46:40Z
  file_id: '5546'
  file_name: IST-2011-0006_IST-2011-0006.pdf
  file_size: 335997
  relation: main_file
file_date_updated: 2020-07-14T12:46:40Z
has_accepted_license: '1'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: '18'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '18'
related_material:
  record:
  - id: '3341'
    relation: later_version
    status: public
status: public
title: Robustness of structurally equivalent concurrent parity games
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '5383'
abstract:
- lang: eng
  text: We present a new decidable logic called TREX for expressing constraints about
    imperative tree data structures. In particular, TREX supports a transitive closure
    operator that can express reachability constraints, which often appear in data
    structure invariants. We show that our logic is closed under weakest precondition
    computation, which enables its use for automated software verification. We further
    show that satisfiability of formulas in TREX is decidable in NP. The low complexity
    makes it an attractive alternative to more expensive logics such as monadic second-order
    logic (MSOL) over trees, which have been traditionally used for reasoning about
    tree data structures.
alternative_title:
- IST Austria Technical Report
author:
- first_name: Thomas
  full_name: Wies, Thomas
  id: 447BFB88-F248-11E8-B48F-1D18A9856A87
  last_name: Wies
- first_name: Marco
  full_name: Muñiz, Marco
  last_name: Muñiz
- first_name: Viktor
  full_name: Kuncak, Viktor
  last_name: Kuncak
citation:
  ama: Wies T, Muñiz M, Kuncak V. <i>On an Efficient Decision Procedure for Imperative
    Tree Data Structures</i>. IST Austria; 2011. doi:<a href="https://doi.org/10.15479/AT:IST-2011-0005">10.15479/AT:IST-2011-0005</a>
  apa: Wies, T., Muñiz, M., &#38; Kuncak, V. (2011). <i>On an efficient decision procedure
    for imperative tree data structures</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2011-0005">https://doi.org/10.15479/AT:IST-2011-0005</a>
  chicago: Wies, Thomas, Marco Muñiz, and Viktor Kuncak. <i>On an Efficient Decision
    Procedure for Imperative Tree Data Structures</i>. IST Austria, 2011. <a href="https://doi.org/10.15479/AT:IST-2011-0005">https://doi.org/10.15479/AT:IST-2011-0005</a>.
  ieee: T. Wies, M. Muñiz, and V. Kuncak, <i>On an efficient decision procedure for
    imperative tree data structures</i>. IST Austria, 2011.
  ista: Wies T, Muñiz M, Kuncak V. 2011. On an efficient decision procedure for imperative
    tree data structures, IST Austria, 25p.
  mla: Wies, Thomas, et al. <i>On an Efficient Decision Procedure for Imperative Tree
    Data Structures</i>. IST Austria, 2011, doi:<a href="https://doi.org/10.15479/AT:IST-2011-0005">10.15479/AT:IST-2011-0005</a>.
  short: T. Wies, M. Muñiz, V. Kuncak, On an Efficient Decision Procedure for Imperative
    Tree Data Structures, IST Austria, 2011.
date_created: 2018-12-12T11:39:01Z
date_published: 2011-04-26T00:00:00Z
date_updated: 2024-10-09T20:54:31Z
day: '26'
ddc:
- '000'
- '006'
department:
- _id: ToHe
doi: 10.15479/AT:IST-2011-0005
file:
- access_level: open_access
  checksum: b20029184c4a819c5f4466a4a3d238b5
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:01Z
  date_updated: 2020-07-14T12:46:40Z
  file_id: '5462'
  file_name: IST-2011-0005_IST-2011-0005.pdf
  file_size: 619053
  relation: main_file
file_date_updated: 2020-07-14T12:46:40Z
has_accepted_license: '1'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: '25'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '19'
related_material:
  record:
  - id: '3323'
    relation: later_version
    status: public
status: public
title: On an efficient decision procedure for imperative tree data structures
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '5384'
abstract:
- lang: eng
  text: 'We consider probabilistic automata on infinite words with acceptance defined
    by parity conditions. We consider three qualitative decision problems: (i) the
    positive decision problem asks whether there is a word that is accepted with positive
    probability; (ii) the almost decision problem asks whether there is a word that
    is accepted with probability 1; and (iii) the limit decision problem asks whether
    for every ε > 0 there is a word that is accepted with probability at least 1 −
    ε. We unify and generalize several decidability results for probabilistic automata
    over infinite words, and identify a robust (closed under union and intersection)
    subclass of probabilistic automata for which all the qualitative decision problems
    are decidable for parity conditions. We also show that if the input words are
    restricted to lasso shape words, then the positive and almost problems are decidable
    for all probabilistic automata with parity conditions.'
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Mathieu
  full_name: Tracol, Mathieu
  id: 3F54FA38-F248-11E8-B48F-1D18A9856A87
  last_name: Tracol
citation:
  ama: Chatterjee K, Tracol M. <i>Decidable Problems for Probabilistic Automata on
    Infinite Words</i>. IST Austria; 2011. doi:<a href="https://doi.org/10.15479/AT:IST-2011-0004">10.15479/AT:IST-2011-0004</a>
  apa: Chatterjee, K., &#38; Tracol, M. (2011). <i>Decidable problems for probabilistic
    automata on infinite words</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2011-0004">https://doi.org/10.15479/AT:IST-2011-0004</a>
  chicago: Chatterjee, Krishnendu, and Mathieu Tracol. <i>Decidable Problems for Probabilistic
    Automata on Infinite Words</i>. IST Austria, 2011. <a href="https://doi.org/10.15479/AT:IST-2011-0004">https://doi.org/10.15479/AT:IST-2011-0004</a>.
  ieee: K. Chatterjee and M. Tracol, <i>Decidable problems for probabilistic automata
    on infinite words</i>. IST Austria, 2011.
  ista: Chatterjee K, Tracol M. 2011. Decidable problems for probabilistic automata
    on infinite words, IST Austria, 30p.
  mla: Chatterjee, Krishnendu, and Mathieu Tracol. <i>Decidable Problems for Probabilistic
    Automata on Infinite Words</i>. IST Austria, 2011, doi:<a href="https://doi.org/10.15479/AT:IST-2011-0004">10.15479/AT:IST-2011-0004</a>.
  short: K. Chatterjee, M. Tracol, Decidable Problems for Probabilistic Automata on
    Infinite Words, IST Austria, 2011.
corr_author: '1'
date_created: 2018-12-12T11:39:01Z
date_published: 2011-04-11T00:00:00Z
date_updated: 2025-09-30T08:07:38Z
day: '11'
ddc:
- '000'
- '005'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2011-0004
file:
- access_level: open_access
  checksum: f5a0f664fadc335990f5fcf138df19f1
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:54:23Z
  date_updated: 2020-07-14T12:46:40Z
  file_id: '5545'
  file_name: IST-2011-004_IST-2011-0004.pdf
  file_size: 570827
  relation: main_file
file_date_updated: 2020-07-14T12:46:40Z
has_accepted_license: '1'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: '30'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '20'
related_material:
  record:
  - id: '2957'
    relation: later_version
    status: public
status: public
title: Decidable problems for probabilistic automata on infinite words
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '5385'
abstract:
- lang: eng
  text: There is recently a significant effort to add quantitative objectives to formal
    verification and synthesis. We introduce and investigate the extension of temporal
    logics with quantitative atomic assertions, aiming for a general and flexible
    framework for quantitative-oriented specifications. In the heart of quantitative
    objectives lies the accumulation of values along a computation. It is either the
    accumulated summation, as with the energy objectives, or the accumulated average,
    as with the mean-payoff objectives. We investigate the extension of temporal logics
    with the prefix-accumulation assertions Sum(v) ≥ c and Avg(v) ≥ c, where v is
    a numeric variable of the system, c is a constant rational number, and Sum(v)
    and Avg(v) denote the accumulated sum and average of the values of v from the
    beginning of the computation up to the current point of time. We also allow the
    path-accumulation assertions LimInfAvg(v) ≥ c and LimSupAvg(v) ≥ c, referring
    to the average value along an entire computation. We study the border of decidability
    for extensions of various temporal logics. In particular, we show that extending
    the fragment of CTL that has only the EX, EF, AX, and AG temporal modalities by
    prefix-accumulation assertions and extending LTL with path-accumulation assertions,
    result in temporal logics whose model-checking problem is decidable. The extended
    logics allow to significantly extend the currently known energy and mean-payoff
    objectives. Moreover, the prefix-accumulation assertions may be refined with “controlled-accumulation”,
    allowing, for example, to specify constraints on the average waiting time between
    a request and a grant. On the negative side, we show that the fragment we point
    to is, in a sense, the maximal logic whose extension with prefix-accumulation
    assertions permits a decidable model-checking procedure. Extending a temporal
    logic that has the EG or EU modalities, and in particular CTL and LTL, makes the
    problem undecidable.
alternative_title:
- IST Austria Technical Report
author:
- first_name: Udi
  full_name: Boker, Udi
  id: 31E297B6-F248-11E8-B48F-1D18A9856A87
  last_name: Boker
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Orna
  full_name: Kupferman, Orna
  last_name: Kupferman
citation:
  ama: Boker U, Chatterjee K, Henzinger TA, Kupferman O. <i>Temporal Specifications
    with Accumulative Values</i>. IST Austria; 2011. doi:<a href="https://doi.org/10.15479/AT:IST-2011-0003">10.15479/AT:IST-2011-0003</a>
  apa: Boker, U., Chatterjee, K., Henzinger, T. A., &#38; Kupferman, O. (2011). <i>Temporal
    specifications with accumulative values</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2011-0003">https://doi.org/10.15479/AT:IST-2011-0003</a>
  chicago: Boker, Udi, Krishnendu Chatterjee, Thomas A Henzinger, and Orna Kupferman.
    <i>Temporal Specifications with Accumulative Values</i>. IST Austria, 2011. <a
    href="https://doi.org/10.15479/AT:IST-2011-0003">https://doi.org/10.15479/AT:IST-2011-0003</a>.
  ieee: U. Boker, K. Chatterjee, T. A. Henzinger, and O. Kupferman, <i>Temporal specifications
    with accumulative values</i>. IST Austria, 2011.
  ista: Boker U, Chatterjee K, Henzinger TA, Kupferman O. 2011. Temporal specifications
    with accumulative values, IST Austria, 14p.
  mla: Boker, Udi, et al. <i>Temporal Specifications with Accumulative Values</i>.
    IST Austria, 2011, doi:<a href="https://doi.org/10.15479/AT:IST-2011-0003">10.15479/AT:IST-2011-0003</a>.
  short: U. Boker, K. Chatterjee, T.A. Henzinger, O. Kupferman, Temporal Specifications
    with Accumulative Values, IST Austria, 2011.
date_created: 2018-12-12T11:39:02Z
date_published: 2011-04-04T00:00:00Z
date_updated: 2025-09-30T09:27:29Z
day: '04'
ddc:
- '000'
- '004'
department:
- _id: ToHe
- _id: KrCh
doi: 10.15479/AT:IST-2011-0003
ec_funded: 1
file:
- access_level: open_access
  checksum: 8491d0d48c4911620ecd5350b413c11e
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:00Z
  date_updated: 2020-07-14T12:46:41Z
  file_id: '5461'
  file_name: IST-2011-0003_IST-2011-0003.pdf
  file_size: 366281
  relation: main_file
file_date_updated: 2020-07-14T12:46:41Z
has_accepted_license: '1'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: '14'
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
- _id: 25EFB36C-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '215543'
  name: COMponent-Based Embedded Systems design Techniques
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
- _id: 25F1337C-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '214373'
  name: Design for Embedded Systems
- _id: 2587B514-B435-11E9-9278-68D0E5697425
  name: Microsoft Research Faculty Fellowship
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '21'
related_material:
  record:
  - id: '2038'
    relation: later_version
    status: public
  - id: '3356'
    relation: later_version
    status: public
status: public
title: Temporal specifications with accumulative values
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '5386'
abstract:
- lang: eng
  text: 'We introduce TopoCut: a new way to integrate knowledge about topological
    properties (TPs) into random field image segmentation model. Instead of including
    TPs as additional constraints during minimization of the energy function, we devise
    an efficient algorithm for modifying the unary potentials such that the resulting
    segmentation is guaranteed with the desired properties. Our method is more flexible
    in the sense that it handles more topology constraints than previous methods,
    which were only able to enforce pairwise or global connectivity. In particular,
    our method is very fast, making it for the first time possible to enforce global
    topological properties in practical image segmentation tasks.'
alternative_title:
- IST Austria Technical Report
author:
- first_name: Chao
  full_name: Chen, Chao
  id: 3E92416E-F248-11E8-B48F-1D18A9856A87
  last_name: Chen
- first_name: Daniel
  full_name: Freedman, Daniel
  last_name: Freedman
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
citation:
  ama: Chen C, Freedman D, Lampert C. <i>Enforcing Topological Constraints in Random
    Field Image Segmentation</i>. IST Austria; 2011. doi:<a href="https://doi.org/10.15479/AT:IST-2011-0002">10.15479/AT:IST-2011-0002</a>
  apa: Chen, C., Freedman, D., &#38; Lampert, C. (2011). <i>Enforcing topological
    constraints in random field image segmentation</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2011-0002">https://doi.org/10.15479/AT:IST-2011-0002</a>
  chicago: Chen, Chao, Daniel Freedman, and Christoph Lampert. <i>Enforcing Topological
    Constraints in Random Field Image Segmentation</i>. IST Austria, 2011. <a href="https://doi.org/10.15479/AT:IST-2011-0002">https://doi.org/10.15479/AT:IST-2011-0002</a>.
  ieee: C. Chen, D. Freedman, and C. Lampert, <i>Enforcing topological constraints
    in random field image segmentation</i>. IST Austria, 2011.
  ista: Chen C, Freedman D, Lampert C. 2011. Enforcing topological constraints in
    random field image segmentation, IST Austria, 69p.
  mla: Chen, Chao, et al. <i>Enforcing Topological Constraints in Random Field Image
    Segmentation</i>. IST Austria, 2011, doi:<a href="https://doi.org/10.15479/AT:IST-2011-0002">10.15479/AT:IST-2011-0002</a>.
  short: C. Chen, D. Freedman, C. Lampert, Enforcing Topological Constraints in Random
    Field Image Segmentation, IST Austria, 2011.
date_created: 2018-12-12T11:39:02Z
date_published: 2011-03-28T00:00:00Z
date_updated: 2024-10-09T20:54:30Z
day: '28'
ddc:
- '000'
department:
- _id: ChLa
doi: 10.15479/AT:IST-2011-0002
file:
- access_level: open_access
  checksum: ad64c2add5fe2ad10e9d5c669f3f9526
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:34Z
  date_updated: 2020-07-14T12:46:41Z
  file_id: '5495'
  file_name: IST-2011-0002_IST-2011-0002.pdf
  file_size: 26390601
  relation: main_file
file_date_updated: 2020-07-14T12:46:41Z
has_accepted_license: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: '69'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '22'
related_material:
  record:
  - id: '3336'
    relation: later_version
    status: public
status: public
title: Enforcing topological constraints in random field image segmentation
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '5387'
abstract:
- lang: eng
  text: We consider Markov Decision Processes (MDPs) with mean-payoff parity and energy
    parity objectives. In system design, the parity objective is used to encode ω-regular
    specifications, and the mean-payoff and energy objectives can be used to model
    quantitative resource constraints. The energy condition re- quires that the resource
    level never drops below 0, and the mean-payoff condi- tion requires that the limit-average
    value of the resource consumption is within a threshold. While these two (energy
    and mean-payoff) classical conditions are equivalent for two-player games, we
    show that they differ for MDPs. We show that the problem of deciding whether a
    state is almost-sure winning (i.e., winning with probability 1) in energy parity
    MDPs is in NP ∩ coNP, while for mean- payoff parity MDPs, the problem is solvable
    in polynomial time, improving a recent PSPACE bound.
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Laurent
  full_name: Doyen, Laurent
  last_name: Doyen
citation:
  ama: Chatterjee K, Doyen L. <i>Energy and Mean-Payoff Parity Markov Decision Processes</i>.
    IST Austria; 2011. doi:<a href="https://doi.org/10.15479/AT:IST-2011-0001">10.15479/AT:IST-2011-0001</a>
  apa: Chatterjee, K., &#38; Doyen, L. (2011). <i>Energy and mean-payoff parity Markov
    decision processes</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2011-0001">https://doi.org/10.15479/AT:IST-2011-0001</a>
  chicago: Chatterjee, Krishnendu, and Laurent Doyen. <i>Energy and Mean-Payoff Parity
    Markov Decision Processes</i>. IST Austria, 2011. <a href="https://doi.org/10.15479/AT:IST-2011-0001">https://doi.org/10.15479/AT:IST-2011-0001</a>.
  ieee: K. Chatterjee and L. Doyen, <i>Energy and mean-payoff parity Markov decision
    processes</i>. IST Austria, 2011.
  ista: Chatterjee K, Doyen L. 2011. Energy and mean-payoff parity Markov decision
    processes, IST Austria, 20p.
  mla: Chatterjee, Krishnendu, and Laurent Doyen. <i>Energy and Mean-Payoff Parity
    Markov Decision Processes</i>. IST Austria, 2011, doi:<a href="https://doi.org/10.15479/AT:IST-2011-0001">10.15479/AT:IST-2011-0001</a>.
  short: K. Chatterjee, L. Doyen, Energy and Mean-Payoff Parity Markov Decision Processes,
    IST Austria, 2011.
date_created: 2018-12-12T11:39:02Z
date_published: 2011-02-16T00:00:00Z
date_updated: 2025-04-15T08:12:14Z
day: '16'
ddc:
- '000'
- '005'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2011-0001
file:
- access_level: open_access
  checksum: 824d6c70e6d3feb3e836b009e0b3cf73
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:52:57Z
  date_updated: 2020-07-14T12:46:41Z
  file_id: '5458'
  file_name: IST-2011-0001_IST-2011-0001.pdf
  file_size: 329976
  relation: main_file
file_date_updated: 2020-07-14T12:46:41Z
has_accepted_license: '1'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: '20'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '23'
related_material:
  record:
  - id: '3345'
    relation: later_version
    status: public
status: public
title: Energy and mean-payoff parity Markov decision processes
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '580'
author:
- first_name: Onur
  full_name: Onur Hosten
  id: 4C02D85E-F248-11E8-B48F-1D18A9856A87
  last_name: Hosten
  orcid: 0000-0002-2031-204X
citation:
  ama: 'Hosten O. Quantum physics: How to catch a wave. <i>Nature</i>. 2011;474(7350):170-171.
    doi:<a href="https://doi.org/10.1038/474170a">10.1038/474170a</a>'
  apa: 'Hosten, O. (2011). Quantum physics: How to catch a wave. <i>Nature</i>. Nature
    Publishing Group. <a href="https://doi.org/10.1038/474170a">https://doi.org/10.1038/474170a</a>'
  chicago: 'Hosten, Onur. “Quantum Physics: How to Catch a Wave.” <i>Nature</i>. Nature
    Publishing Group, 2011. <a href="https://doi.org/10.1038/474170a">https://doi.org/10.1038/474170a</a>.'
  ieee: 'O. Hosten, “Quantum physics: How to catch a wave,” <i>Nature</i>, vol. 474,
    no. 7350. Nature Publishing Group, pp. 170–171, 2011.'
  ista: 'Hosten O. 2011. Quantum physics: How to catch a wave. Nature. 474(7350),
    170–171.'
  mla: 'Hosten, Onur. “Quantum Physics: How to Catch a Wave.” <i>Nature</i>, vol.
    474, no. 7350, Nature Publishing Group, 2011, pp. 170–71, doi:<a href="https://doi.org/10.1038/474170a">10.1038/474170a</a>.'
  short: O. Hosten, Nature 474 (2011) 170–171.
date_created: 2018-12-11T11:47:18Z
date_published: 2011-06-08T00:00:00Z
date_updated: 2021-01-12T08:03:34Z
day: '08'
doi: 10.1038/474170a
extern: 1
intvolume: '       474'
issue: '7350'
month: '06'
page: 170 - 171
publication: Nature
publication_status: published
publisher: Nature Publishing Group
publist_id: '7224'
quality_controlled: 0
status: public
title: 'Quantum physics: How to catch a wave'
type: journal_article
volume: 474
year: '2011'
...
---
_id: '585'
abstract:
- lang: eng
  text: |+
    We present two independent schemes for the precise focusing of orthogonal polarizations of light at arbitrary relative locations. The first scheme uses a polarization Sagnac interferometer, the second a set of three birefringent elements.

alternative_title:
- Optics InfoBase Conference Papers
author:
- first_name: David
  full_name: Schmid, David
  last_name: Schmid
- first_name: Shiraz
  full_name: Hazrat, Shiraz
  last_name: Hazrat
- first_name: Radhika
  full_name: Rangarajan, Radhika
  last_name: Rangarajan
- first_name: Onur
  full_name: Onur Hosten
  id: 4C02D85E-F248-11E8-B48F-1D18A9856A87
  last_name: Hosten
  orcid: 0000-0002-2031-204X
- first_name: Stephan
  full_name: Quint, Stephan
  last_name: Quint
- first_name: Paul
  full_name: Kwiat, Paul G
  last_name: Kwiat
citation:
  ama: 'Schmid D, Hazrat S, Rangarajan R, Hosten O, Quint S, Kwiat P. Methods towards
    achieving precise birefringent focusing. In: OSA; 2011. doi:<a href="https://doi.org/10.1364/CLEO_AT.2011.JThB130">10.1364/CLEO_AT.2011.JThB130</a>'
  apa: 'Schmid, D., Hazrat, S., Rangarajan, R., Hosten, O., Quint, S., &#38; Kwiat,
    P. (2011). Methods towards achieving precise birefringent focusing. Presented
    at the QELS: Quantum Electronics and Laser Science, OSA. <a href="https://doi.org/10.1364/CLEO_AT.2011.JThB130">https://doi.org/10.1364/CLEO_AT.2011.JThB130</a>'
  chicago: Schmid, David, Shiraz Hazrat, Radhika Rangarajan, Onur Hosten, Stephan
    Quint, and Paul Kwiat. “Methods towards Achieving Precise Birefringent Focusing.”
    OSA, 2011. <a href="https://doi.org/10.1364/CLEO_AT.2011.JThB130">https://doi.org/10.1364/CLEO_AT.2011.JThB130</a>.
  ieee: 'D. Schmid, S. Hazrat, R. Rangarajan, O. Hosten, S. Quint, and P. Kwiat, “Methods
    towards achieving precise birefringent focusing,” presented at the QELS: Quantum
    Electronics and Laser Science, 2011.'
  ista: 'Schmid D, Hazrat S, Rangarajan R, Hosten O, Quint S, Kwiat P. 2011. Methods
    towards achieving precise birefringent focusing. QELS: Quantum Electronics and
    Laser Science, Optics InfoBase Conference Papers, .'
  mla: Schmid, David, et al. <i>Methods towards Achieving Precise Birefringent Focusing</i>.
    OSA, 2011, doi:<a href="https://doi.org/10.1364/CLEO_AT.2011.JThB130">10.1364/CLEO_AT.2011.JThB130</a>.
  short: D. Schmid, S. Hazrat, R. Rangarajan, O. Hosten, S. Quint, P. Kwiat, in:,
    OSA, 2011.
conference:
  name: 'QELS: Quantum Electronics and Laser Science'
date_created: 2018-12-11T11:47:20Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2021-01-12T08:03:44Z
day: '01'
doi: 10.1364/CLEO_AT.2011.JThB130
extern: 1
month: '01'
publication_status: published
publisher: OSA
publist_id: '7220'
quality_controlled: 0
status: public
title: Methods towards achieving precise birefringent focusing
type: conference
year: '2011'
...
...
---
_id: '586'
abstract:
- lang: eng
  text: We demonstrate a Raman laser using cold Rb87 atoms as the gain medium in a
    high-finesse optical cavity. We observe robust continuous wave lasing in the atypical
    regime where single atoms can considerably affect the cavity field. Consequently,
    we discover unusual lasing threshold behavior in the system causing jumps in lasing
    power, and propose a model to explain the effect. We also measure the intermode
    laser linewidth, and observe values as low as 80Hz. The tunable gain properties
    of this laser suggest multiple directions for future research.
author:
- first_name: Geert
  full_name: Vrijsen, Geert
  last_name: Vrijsen
- first_name: Onur
  full_name: Onur Hosten
  id: 4C02D85E-F248-11E8-B48F-1D18A9856A87
  last_name: Hosten
  orcid: 0000-0002-2031-204X
- first_name: Jongmin
  full_name: Lee, Jongmin
  last_name: Lee
- first_name: Simon
  full_name: Bernon, Simon
  last_name: Bernon
- first_name: Mark
  full_name: Kasevich, Mark A
  last_name: Kasevich
citation:
  ama: Vrijsen G, Hosten O, Lee J, Bernon S, Kasevich M. Raman lasing with a cold
    atom gain medium in a high-finesse optical cavity. <i>Physical Review Letters</i>.
    2011;107(6). doi:<a href="https://doi.org/10.1103/PhysRevLett.107.063904">10.1103/PhysRevLett.107.063904</a>
  apa: Vrijsen, G., Hosten, O., Lee, J., Bernon, S., &#38; Kasevich, M. (2011). Raman
    lasing with a cold atom gain medium in a high-finesse optical cavity. <i>Physical
    Review Letters</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevLett.107.063904">https://doi.org/10.1103/PhysRevLett.107.063904</a>
  chicago: Vrijsen, Geert, Onur Hosten, Jongmin Lee, Simon Bernon, and Mark Kasevich.
    “Raman Lasing with a Cold Atom Gain Medium in a High-Finesse Optical Cavity.”
    <i>Physical Review Letters</i>. American Physical Society, 2011. <a href="https://doi.org/10.1103/PhysRevLett.107.063904">https://doi.org/10.1103/PhysRevLett.107.063904</a>.
  ieee: G. Vrijsen, O. Hosten, J. Lee, S. Bernon, and M. Kasevich, “Raman lasing with
    a cold atom gain medium in a high-finesse optical cavity,” <i>Physical Review
    Letters</i>, vol. 107, no. 6. American Physical Society, 2011.
  ista: Vrijsen G, Hosten O, Lee J, Bernon S, Kasevich M. 2011. Raman lasing with
    a cold atom gain medium in a high-finesse optical cavity. Physical Review Letters.
    107(6).
  mla: Vrijsen, Geert, et al. “Raman Lasing with a Cold Atom Gain Medium in a High-Finesse
    Optical Cavity.” <i>Physical Review Letters</i>, vol. 107, no. 6, American Physical
    Society, 2011, doi:<a href="https://doi.org/10.1103/PhysRevLett.107.063904">10.1103/PhysRevLett.107.063904</a>.
  short: G. Vrijsen, O. Hosten, J. Lee, S. Bernon, M. Kasevich, Physical Review Letters
    107 (2011).
date_created: 2018-12-11T11:47:20Z
date_published: 2011-08-04T00:00:00Z
date_updated: 2021-01-12T08:05:05Z
day: '04'
doi: 10.1103/PhysRevLett.107.063904
extern: 1
intvolume: '       107'
issue: '6'
month: '08'
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '7223'
quality_controlled: 0
status: public
title: Raman lasing with a cold atom gain medium in a high-finesse optical cavity
type: journal_article
volume: 107
year: '2011'
...
---
_id: '597'
abstract:
- lang: eng
  text: The macromolecular assembly required to initiate transcription of protein-coding
    genes, known as the Pre-Initiation Complex (PIC), consists of multiple protein
    complexes and is approximately 3.5 MDa in size. At the heart of this assembly
    is the Mediator complex, which helps regulate PIC activity and interacts with
    the RNA polymerase II (pol II) enzyme. The structure of the human Mediator-pol
    II interface is not well-characterized, whereas attempts to structurally define
    the Mediator-pol II interaction in yeast have relied on incomplete assemblies
    of Mediator and/or pol II and have yielded inconsistent interpretations. We have
    assembled the complete, 1.9 MDa human Mediator-pol II-TFIIF complex from purified
    components and have characterized its structural organization using cryo-electron
    microscopy and single-particle reconstruction techniques. The orientation of pol
    II within this assembly was determined by crystal structure docking and further
    validated with projection matching experiments, allowing the structural organization
    of the entire human PIC to be envisioned. Significantly, pol II orientation within
    the Mediator-pol II-TFIIF assembly can be reconciled with past studies that determined
    the location of other PIC components relative to pol II itself. Pol II surfaces
    required for interacting with TFIIB, TFIIE, and promoter DNA (i.e., the pol II
    cleft) are exposed within the Mediator-pol II-TFIIF structure; RNA exit is unhindered
    along the RPB4/7 subunits; upstream and downstream DNA is accessible for binding
    additional factors; and no major structural re-organization is necessary to accommodate
    the large, multi-subunit TFIIH or TFIID complexes. The data also reveal how pol
    II binding excludes Mediator-CDK8 subcomplex interactions and provide a structural
    basis for Mediator-dependent control of PIC assembly and function. Finally, parallel
    structural analysis of Mediator-pol II complexes lacking TFIIF reveal that TFIIF
    plays a key role in stabilizing pol II orientation within the assembly.
article_processing_charge: No
author:
- first_name: Carrie A
  full_name: Bernecky, Carrie A
  id: 2CB9DFE2-F248-11E8-B48F-1D18A9856A87
  last_name: Bernecky
  orcid: 0000-0003-0893-7036
- first_name: Patricia
  full_name: Grob, Patricia
  last_name: Grob
- first_name: Christopher
  full_name: Ebmeier, Christopher
  last_name: Ebmeier
- first_name: Eva
  full_name: Nogales, Eva
  last_name: Nogales
- first_name: Dylan
  full_name: Taatjes, Dylan
  last_name: Taatjes
citation:
  ama: Bernecky C, Grob P, Ebmeier C, Nogales E, Taatjes D. Molecular architecture
    of the human Mediator-RNA polymerase II-TFIIF assembly. <i>PLoS Biology</i>. 2011;9(3).
    doi:<a href="https://doi.org/10.1371/journal.pbio.1000603">10.1371/journal.pbio.1000603</a>
  apa: Bernecky, C., Grob, P., Ebmeier, C., Nogales, E., &#38; Taatjes, D. (2011).
    Molecular architecture of the human Mediator-RNA polymerase II-TFIIF assembly.
    <i>PLoS Biology</i>. Public Library of Science. <a href="https://doi.org/10.1371/journal.pbio.1000603">https://doi.org/10.1371/journal.pbio.1000603</a>
  chicago: Bernecky, Carrie, Patricia Grob, Christopher Ebmeier, Eva Nogales, and
    Dylan Taatjes. “Molecular Architecture of the Human Mediator-RNA Polymerase II-TFIIF
    Assembly.” <i>PLoS Biology</i>. Public Library of Science, 2011. <a href="https://doi.org/10.1371/journal.pbio.1000603">https://doi.org/10.1371/journal.pbio.1000603</a>.
  ieee: C. Bernecky, P. Grob, C. Ebmeier, E. Nogales, and D. Taatjes, “Molecular architecture
    of the human Mediator-RNA polymerase II-TFIIF assembly,” <i>PLoS Biology</i>,
    vol. 9, no. 3. Public Library of Science, 2011.
  ista: Bernecky C, Grob P, Ebmeier C, Nogales E, Taatjes D. 2011. Molecular architecture
    of the human Mediator-RNA polymerase II-TFIIF assembly. PLoS Biology. 9(3).
  mla: Bernecky, Carrie, et al. “Molecular Architecture of the Human Mediator-RNA
    Polymerase II-TFIIF Assembly.” <i>PLoS Biology</i>, vol. 9, no. 3, Public Library
    of Science, 2011, doi:<a href="https://doi.org/10.1371/journal.pbio.1000603">10.1371/journal.pbio.1000603</a>.
  short: C. Bernecky, P. Grob, C. Ebmeier, E. Nogales, D. Taatjes, PLoS Biology 9
    (2011).
date_created: 2018-12-11T11:47:24Z
date_published: 2011-03-01T00:00:00Z
date_updated: 2021-01-12T08:05:25Z
day: '01'
doi: 10.1371/journal.pbio.1000603
extern: '1'
intvolume: '         9'
issue: '3'
language:
- iso: eng
month: '03'
oa_version: None
publication: PLoS Biology
publication_status: published
publisher: Public Library of Science
publist_id: '7209'
status: public
title: Molecular architecture of the human Mediator-RNA polymerase II-TFIIF assembly
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 9
year: '2011'
...
---
_id: '6137'
abstract:
- lang: eng
  text: Variation in food quality and abundance requires animals to decide whether
    to stay on a poor food patch or leave in search of better food. An important question
    in behavioral ecology asks when is it optimal for an animal to leave a food patch
    it is depleting. Although optimal foraging is central to evolutionary success,
    the neural and molecular mechanisms underlying it are poorly understood. Here
    we investigate the neuronal basis for adaptive food-leaving behavior in response
    to resource depletion in Caenorhabditis elegans, and identify several of the signaling
    pathways involved. The ASE neurons, previously implicated in salt chemoattraction,
    promote food-leaving behavior via a cGMP pathway as food becomes limited. High
    ambient O2 promotes food-leaving via the O2-sensing neurons AQR, PQR, and URX.
    Ectopic activation of these neurons using channelrhodopsin is sufficient to induce
    high food-leaving behavior. In contrast, the neuropeptide receptor NPR-1, which
    regulates social behavior on food, acts in the ASE neurons, the nociceptive ASH
    neurons, and in the RMG interneuron to repress food-leaving. Finally, we show
    that neuroendocrine signaling by TGF-β/DAF-7 and neuronal insulin signaling are
    necessary for adaptive food-leaving behavior. We suggest that animals integrate
    information about their nutritional state with ambient oxygen and gustatory stimuli
    to formulate optimal foraging strategies.
author:
- first_name: K.
  full_name: Milward, K.
  last_name: Milward
- first_name: K. E.
  full_name: Busch, K. E.
  last_name: Busch
- first_name: R. J.
  full_name: Murphy, R. J.
  last_name: Murphy
- first_name: Mario
  full_name: de Bono, Mario
  id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
  last_name: de Bono
  orcid: 0000-0001-8347-0443
- first_name: B.
  full_name: Olofsson, B.
  last_name: Olofsson
citation:
  ama: Milward K, Busch KE, Murphy RJ, de Bono M, Olofsson B. Neuronal and molecular
    substrates for optimal foraging in Caenorhabditis elegans. <i>Proceedings of the
    National Academy of Sciences</i>. 2011;108(51):20672-20677. doi:<a href="https://doi.org/10.1073/pnas.1106134109">10.1073/pnas.1106134109</a>
  apa: Milward, K., Busch, K. E., Murphy, R. J., de Bono, M., &#38; Olofsson, B. (2011).
    Neuronal and molecular substrates for optimal foraging in Caenorhabditis elegans.
    <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences.
    <a href="https://doi.org/10.1073/pnas.1106134109">https://doi.org/10.1073/pnas.1106134109</a>
  chicago: Milward, K., K. E. Busch, R. J. Murphy, Mario de Bono, and B. Olofsson.
    “Neuronal and Molecular Substrates for Optimal Foraging in Caenorhabditis Elegans.”
    <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences,
    2011. <a href="https://doi.org/10.1073/pnas.1106134109">https://doi.org/10.1073/pnas.1106134109</a>.
  ieee: K. Milward, K. E. Busch, R. J. Murphy, M. de Bono, and B. Olofsson, “Neuronal
    and molecular substrates for optimal foraging in Caenorhabditis elegans,” <i>Proceedings
    of the National Academy of Sciences</i>, vol. 108, no. 51. National Academy of
    Sciences, pp. 20672–20677, 2011.
  ista: Milward K, Busch KE, Murphy RJ, de Bono M, Olofsson B. 2011. Neuronal and
    molecular substrates for optimal foraging in Caenorhabditis elegans. Proceedings
    of the National Academy of Sciences. 108(51), 20672–20677.
  mla: Milward, K., et al. “Neuronal and Molecular Substrates for Optimal Foraging
    in Caenorhabditis Elegans.” <i>Proceedings of the National Academy of Sciences</i>,
    vol. 108, no. 51, National Academy of Sciences, 2011, pp. 20672–77, doi:<a href="https://doi.org/10.1073/pnas.1106134109">10.1073/pnas.1106134109</a>.
  short: K. Milward, K.E. Busch, R.J. Murphy, M. de Bono, B. Olofsson, Proceedings
    of the National Academy of Sciences 108 (2011) 20672–20677.
date_created: 2019-03-20T14:30:06Z
date_published: 2011-12-20T00:00:00Z
date_updated: 2021-01-12T08:06:18Z
day: '20'
doi: 10.1073/pnas.1106134109
extern: '1'
external_id:
  pmid:
  - '22135454'
intvolume: '       108'
issue: '51'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3251049/
month: '12'
oa: 1
oa_version: Submitted Version
page: 20672-20677
pmid: 1
publication: Proceedings of the National Academy of Sciences
publication_identifier:
  issn:
  - 0027-8424
  - 1091-6490
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
status: public
title: Neuronal and molecular substrates for optimal foraging in Caenorhabditis elegans
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 108
year: '2011'
...
---
_id: '6138'
author:
- first_name: Andrew Jonathan
  full_name: Bretscher, Andrew Jonathan
  last_name: Bretscher
- first_name: Eiji
  full_name: Kodama-Namba, Eiji
  last_name: Kodama-Namba
- first_name: Karl Emanuel
  full_name: Busch, Karl Emanuel
  last_name: Busch
- first_name: Robin Joseph
  full_name: Murphy, Robin Joseph
  last_name: Murphy
- first_name: Zoltan
  full_name: Soltesz, Zoltan
  last_name: Soltesz
- first_name: Patrick
  full_name: Laurent, Patrick
  last_name: Laurent
- first_name: Mario
  full_name: de Bono, Mario
  id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
  last_name: de Bono
  orcid: 0000-0001-8347-0443
citation:
  ama: Bretscher AJ, Kodama-Namba E, Busch KE, et al. Temperature, oxygen, and salt-sensing
    neurons in C. elegans are carbon dioxide sensors that control avoidance behavior.
    <i>Neuron</i>. 2011;69(6):1099-1113. doi:<a href="https://doi.org/10.1016/j.neuron.2011.02.023">10.1016/j.neuron.2011.02.023</a>
  apa: Bretscher, A. J., Kodama-Namba, E., Busch, K. E., Murphy, R. J., Soltesz, Z.,
    Laurent, P., &#38; de Bono, M. (2011). Temperature, oxygen, and salt-sensing neurons
    in C. elegans are carbon dioxide sensors that control avoidance behavior. <i>Neuron</i>.
    Elsevier BV. <a href="https://doi.org/10.1016/j.neuron.2011.02.023">https://doi.org/10.1016/j.neuron.2011.02.023</a>
  chicago: Bretscher, Andrew Jonathan, Eiji Kodama-Namba, Karl Emanuel Busch, Robin Joseph
    Murphy, Zoltan Soltesz, Patrick Laurent, and Mario de Bono. “Temperature, Oxygen,
    and Salt-Sensing Neurons in C. Elegans Are Carbon Dioxide Sensors That Control
    Avoidance Behavior.” <i>Neuron</i>. Elsevier BV, 2011. <a href="https://doi.org/10.1016/j.neuron.2011.02.023">https://doi.org/10.1016/j.neuron.2011.02.023</a>.
  ieee: A. J. Bretscher <i>et al.</i>, “Temperature, oxygen, and salt-sensing neurons
    in C. elegans are carbon dioxide sensors that control avoidance behavior,” <i>Neuron</i>,
    vol. 69, no. 6. Elsevier BV, pp. 1099–1113, 2011.
  ista: Bretscher AJ, Kodama-Namba E, Busch KE, Murphy RJ, Soltesz Z, Laurent P, de
    Bono M. 2011. Temperature, oxygen, and salt-sensing neurons in C. elegans are
    carbon dioxide sensors that control avoidance behavior. Neuron. 69(6), 1099–1113.
  mla: Bretscher, Andrew Jonathan, et al. “Temperature, Oxygen, and Salt-Sensing Neurons
    in C. Elegans Are Carbon Dioxide Sensors That Control Avoidance Behavior.” <i>Neuron</i>,
    vol. 69, no. 6, Elsevier BV, 2011, pp. 1099–113, doi:<a href="https://doi.org/10.1016/j.neuron.2011.02.023">10.1016/j.neuron.2011.02.023</a>.
  short: A.J. Bretscher, E. Kodama-Namba, K.E. Busch, R.J. Murphy, Z. Soltesz, P.
    Laurent, M. de Bono, Neuron 69 (2011) 1099–1113.
date_created: 2019-03-20T15:01:41Z
date_published: 2011-03-24T00:00:00Z
date_updated: 2021-01-12T08:06:18Z
day: '24'
ddc:
- '570'
doi: 10.1016/j.neuron.2011.02.023
extern: '1'
external_id:
  pmid:
  - '21435556'
file:
- access_level: open_access
  checksum: 547cffd123f4c508ae927c9244b8f92a
  content_type: application/pdf
  creator: kschuh
  date_created: 2019-03-20T15:06:32Z
  date_updated: 2020-07-14T12:47:20Z
  file_id: '6139'
  file_name: 2011_Cell_Bretscher.pdf
  file_size: 2448332
  relation: main_file
file_date_updated: 2020-07-14T12:47:20Z
has_accepted_license: '1'
intvolume: '        69'
issue: '6'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 1099-1113
pmid: 1
publication: Neuron
publication_identifier:
  issn:
  - 0896-6273
publication_status: published
publisher: Elsevier BV
quality_controlled: '1'
status: public
title: Temperature, oxygen, and salt-sensing neurons in C. elegans are carbon dioxide
  sensors that control avoidance behavior
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 69
year: '2011'
...
---
_id: '6140'
abstract:
- lang: eng
  text: 'Genome sequence comparisons have highlighted many novel gene families that
    are conserved across animal phyla but whose biological function is unknown. Here,
    we functionally characterize a member of one such family, the macoilins. Macoilins
    are characterized by several highly conserved predicted transmembrane domains
    towards the N-terminus and by coiled-coil regions C-terminally. They are found
    throughout Eumetazoa but not in other organisms. Mutants for the single Caenorhabditis
    elegans macoilin, maco-1, exhibit a constellation of behavioral phenotypes, including
    defects in aggregation, O2 responses, and swimming. MACO-1 protein is expressed
    broadly and specifically in the nervous system and localizes to the rough endoplasmic
    reticulum; it is excluded from dendrites and axons. Apart from subtle synapse
    defects, nervous system development appears wild-type in maco-1 mutants. However,
    maco-1 animals are resistant to the cholinesterase inhibitor aldicarb and sensitive
    to levamisole, suggesting pre-synaptic defects. Using in vivo imaging, we show
    that macoilin is required to evoke Ca2+ transients, at least in some neurons:
    in maco-1 mutants the O2-sensing neuron PQR is unable to generate a Ca2+ response
    to a rise in O2. By genetically disrupting neurotransmission, we show that pre-synaptic
    input is not necessary for PQR to respond to O2, indicating that the response
    is mediated by cell-intrinsic sensory transduction and amplification. Disrupting
    the sodium leak channels NCA-1/NCA-2, or the N-,P/Q,R-type voltage-gated Ca2+
    channels, also fails to disrupt Ca2+ responses in the PQR cell body to O2 stimuli.
    By contrast, mutations in egl-19, which encodes the only Caenorhabditis elegans
    L-type voltage-gated Ca2+ channel α1 subunit, recapitulate the Ca2+ response defect
    we see in maco-1 mutants, although we do not see defects in localization of EGL-19.
    Together, our data suggest that macoilin acts in the ER to regulate assembly or
    traffic of ion channels or ion channel regulators.'
article_number: e1001341
author:
- first_name: Fausto
  full_name: Arellano-Carbajal, Fausto
  last_name: Arellano-Carbajal
- first_name: Luis
  full_name: Briseño-Roa, Luis
  last_name: Briseño-Roa
- first_name: Africa
  full_name: Couto, Africa
  last_name: Couto
- first_name: Benny H. H.
  full_name: Cheung, Benny H. H.
  last_name: Cheung
- first_name: Michel
  full_name: Labouesse, Michel
  last_name: Labouesse
- first_name: Mario
  full_name: de Bono, Mario
  id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
  last_name: de Bono
  orcid: 0000-0001-8347-0443
citation:
  ama: Arellano-Carbajal F, Briseño-Roa L, Couto A, Cheung BHH, Labouesse M, de Bono
    M. Macoilin, a conserved nervous system–specific ER membrane protein that regulates
    neuronal excitability. <i>PLoS Genetics</i>. 2011;7(3). doi:<a href="https://doi.org/10.1371/journal.pgen.1001341">10.1371/journal.pgen.1001341</a>
  apa: Arellano-Carbajal, F., Briseño-Roa, L., Couto, A., Cheung, B. H. H., Labouesse,
    M., &#38; de Bono, M. (2011). Macoilin, a conserved nervous system–specific ER
    membrane protein that regulates neuronal excitability. <i>PLoS Genetics</i>. Public
    Library of Science. <a href="https://doi.org/10.1371/journal.pgen.1001341">https://doi.org/10.1371/journal.pgen.1001341</a>
  chicago: Arellano-Carbajal, Fausto, Luis Briseño-Roa, Africa Couto, Benny H. H.
    Cheung, Michel Labouesse, and Mario de Bono. “Macoilin, a Conserved Nervous System–Specific
    ER Membrane Protein That Regulates Neuronal Excitability.” <i>PLoS Genetics</i>.
    Public Library of Science, 2011. <a href="https://doi.org/10.1371/journal.pgen.1001341">https://doi.org/10.1371/journal.pgen.1001341</a>.
  ieee: F. Arellano-Carbajal, L. Briseño-Roa, A. Couto, B. H. H. Cheung, M. Labouesse,
    and M. de Bono, “Macoilin, a conserved nervous system–specific ER membrane protein
    that regulates neuronal excitability,” <i>PLoS Genetics</i>, vol. 7, no. 3. Public
    Library of Science, 2011.
  ista: Arellano-Carbajal F, Briseño-Roa L, Couto A, Cheung BHH, Labouesse M, de Bono
    M. 2011. Macoilin, a conserved nervous system–specific ER membrane protein that
    regulates neuronal excitability. PLoS Genetics. 7(3), e1001341.
  mla: Arellano-Carbajal, Fausto, et al. “Macoilin, a Conserved Nervous System–Specific
    ER Membrane Protein That Regulates Neuronal Excitability.” <i>PLoS Genetics</i>,
    vol. 7, no. 3, e1001341, Public Library of Science, 2011, doi:<a href="https://doi.org/10.1371/journal.pgen.1001341">10.1371/journal.pgen.1001341</a>.
  short: F. Arellano-Carbajal, L. Briseño-Roa, A. Couto, B.H.H. Cheung, M. Labouesse,
    M. de Bono, PLoS Genetics 7 (2011).
date_created: 2019-03-20T15:08:23Z
date_published: 2011-03-17T00:00:00Z
date_updated: 2021-01-12T08:06:19Z
day: '17'
ddc:
- '570'
doi: 10.1371/journal.pgen.1001341
extern: '1'
external_id:
  pmid:
  - '21437263'
file:
- access_level: open_access
  checksum: c609b2ce616d7dafbb617ec5d022f1ea
  content_type: application/pdf
  creator: kschuh
  date_created: 2019-03-20T15:18:11Z
  date_updated: 2020-07-14T12:47:20Z
  file_id: '6141'
  file_name: 2011_PLOS_Arellano-Carbajal.PDF
  file_size: 5625063
  relation: main_file
file_date_updated: 2020-07-14T12:47:20Z
has_accepted_license: '1'
intvolume: '         7'
issue: '3'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: PLoS Genetics
publication_identifier:
  issn:
  - 1553-7404
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
status: public
title: Macoilin, a conserved nervous system–specific ER membrane protein that regulates
  neuronal excitability
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2011'
...
---
_id: '6298'
abstract:
- lang: eng
  text: Tumor necrosis factor-stimulated gene-6 (TSG-6) is a hyalu-ronan (HA)-binding
    protein that plays important roles ininflammation and ovulation. TSG-6-mediated
    cross-linking ofHA has been proposed as a functional mechanism (e.g.for regu-lating
    leukocyte adhesion), but direct evidence for cross-linkingis lacking, and we know
    very little about its impact on HA ultra-structure. Here we used films of polymeric
    and oligomeric HAchains, end-grafted to a solid support, and a combination ofsurface-sensitive
    biophysical techniques to quantify the bindingof TSG-6 into HA films and to correlate
    binding to morpholog-ical changes. We find that full-length TSG-6 binds with pro-nounced
    positive cooperativity and demonstrate that it cancross-link HA at physiologically
    relevant concentrations. Ourdata indicate that cooperative binding of full-length
    TSG-6arises from HA-induced protein oligomerization and that theTSG-6 oligomers
    act as cross-linkers. In contrast, the HA-bind-ing domain of TSG-6 (the Link module)
    alone binds withoutpositive cooperativity and weaker than the full-length protein.Both
    the Link module and full-length TSG-6 condensed andrigidified HA films, and the
    degree of condensation scaled withthe affinity between the TSG-6 constructs and
    HA. We proposethat condensation is the result of protein-mediated HA cross-linking.
    Our findings firmly establish that TSG-6 is a potent HAcross-linking agent and
    might hence have important implica-tions for the mechanistic understanding of
    the biological func-tion of TSG-6 (e.g.in inflammation).
author:
- first_name: Natalia
  full_name: Baranova, Natalia
  id: 38661662-F248-11E8-B48F-1D18A9856A87
  last_name: Baranova
  orcid: 0000-0002-3086-9124
- first_name: Erik
  full_name: Nilebäck, Erik
  last_name: Nilebäck
- first_name: F. Michael
  full_name: Haller, F. Michael
  last_name: Haller
- first_name: David C.
  full_name: Briggs, David C.
  last_name: Briggs
- first_name: Sofia
  full_name: Svedhem, Sofia
  last_name: Svedhem
- first_name: Anthony J.
  full_name: Day, Anthony J.
  last_name: Day
- first_name: Ralf P.
  full_name: Richter, Ralf P.
  last_name: Richter
citation:
  ama: Baranova NS, Nilebäck E, Haller FM, et al. The inflammation-associated protein
    TSG-6 cross-links hyaluronan via hyaluronan-induced TSG-6 oligomers. <i>Journal
    of Biological Chemistry</i>. 2011;286(29):25675-25686. doi:<a href="https://doi.org/10.1074/jbc.m111.247395">10.1074/jbc.m111.247395</a>
  apa: Baranova, N. S., Nilebäck, E., Haller, F. M., Briggs, D. C., Svedhem, S., Day,
    A. J., &#38; Richter, R. P. (2011). The inflammation-associated protein TSG-6
    cross-links hyaluronan via hyaluronan-induced TSG-6 oligomers. <i>Journal of Biological
    Chemistry</i>. American Society for Biochemistry &#38; Molecular Biology. <a href="https://doi.org/10.1074/jbc.m111.247395">https://doi.org/10.1074/jbc.m111.247395</a>
  chicago: Baranova, Natalia S., Erik Nilebäck, F. Michael Haller, David C. Briggs,
    Sofia Svedhem, Anthony J. Day, and Ralf P. Richter. “The Inflammation-Associated
    Protein TSG-6 Cross-Links Hyaluronan via Hyaluronan-Induced TSG-6 Oligomers.”
    <i>Journal of Biological Chemistry</i>. American Society for Biochemistry &#38;
    Molecular Biology, 2011. <a href="https://doi.org/10.1074/jbc.m111.247395">https://doi.org/10.1074/jbc.m111.247395</a>.
  ieee: N. S. Baranova <i>et al.</i>, “The inflammation-associated protein TSG-6 cross-links
    hyaluronan via hyaluronan-induced TSG-6 oligomers,” <i>Journal of Biological Chemistry</i>,
    vol. 286, no. 29. American Society for Biochemistry &#38; Molecular Biology, pp.
    25675–25686, 2011.
  ista: Baranova NS, Nilebäck E, Haller FM, Briggs DC, Svedhem S, Day AJ, Richter
    RP. 2011. The inflammation-associated protein TSG-6 cross-links hyaluronan via
    hyaluronan-induced TSG-6 oligomers. Journal of Biological Chemistry. 286(29),
    25675–25686.
  mla: Baranova, Natalia S., et al. “The Inflammation-Associated Protein TSG-6 Cross-Links
    Hyaluronan via Hyaluronan-Induced TSG-6 Oligomers.” <i>Journal of Biological Chemistry</i>,
    vol. 286, no. 29, American Society for Biochemistry &#38; Molecular Biology, 2011,
    pp. 25675–86, doi:<a href="https://doi.org/10.1074/jbc.m111.247395">10.1074/jbc.m111.247395</a>.
  short: N.S. Baranova, E. Nilebäck, F.M. Haller, D.C. Briggs, S. Svedhem, A.J. Day,
    R.P. Richter, Journal of Biological Chemistry 286 (2011) 25675–25686.
date_created: 2019-04-11T20:57:43Z
date_published: 2011-07-22T00:00:00Z
date_updated: 2021-01-12T08:06:58Z
day: '22'
doi: 10.1074/jbc.m111.247395
extern: '1'
intvolume: '       286'
issue: '29'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.jbc.org/content/286/29/25675.full.pdf
month: '07'
oa: 1
oa_version: Published Version
page: 25675-25686
publication: Journal of Biological Chemistry
publication_identifier:
  issn:
  - 0021-9258
  - 1083-351X
publication_status: published
publisher: American Society for Biochemistry & Molecular Biology
quality_controlled: '1'
status: public
title: The inflammation-associated protein TSG-6 cross-links hyaluronan via hyaluronan-induced
  TSG-6 oligomers
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 286
year: '2011'
...
---
_id: '6496'
abstract:
- lang: eng
  text: We report the switching behavior of the full bacterial flagellum system that
    includes the filament and the motor in wild-type Escherichia coli cells. In sorting
    the motor behavior by the clockwise bias, we find that the distributions of the
    clockwise (CW) and counterclockwise (CCW) intervals are either exponential or
    nonexponential with long tails. At low bias, CW intervals are exponentially distributed
    and CCW intervals exhibit long tails. At intermediate CW bias (0.5) both CW and
    CCW intervals are mainly exponentially distributed. A simple model suggests that
    these two distinct switching behaviors are governed by the presence of signaling
    noise within the chemotaxis network. Low noise yields exponentially distributed
    intervals, whereas large noise yields nonexponential behavior with long tails.
    These drastically different motor statistics may play a role in optimizing bacterial
    behavior for a wide range of environmental conditions.
article_processing_charge: No
author:
- first_name: Heungwon
  full_name: Park, Heungwon
  last_name: Park
- first_name: Panos
  full_name: Oikonomou, Panos
  last_name: Oikonomou
- first_name: Calin C
  full_name: Guet, Calin C
  id: 47F8433E-F248-11E8-B48F-1D18A9856A87
  last_name: Guet
  orcid: 0000-0001-6220-2052
- first_name: Philippe
  full_name: Cluzel, Philippe
  last_name: Cluzel
citation:
  ama: Park H, Oikonomou P, Guet CC, Cluzel P. Noise underlies switching behavior
    of the bacterial flagellum. <i>Biophysical Journal</i>. 2011;101(10):2336-2340.
    doi:<a href="https://doi.org/10.1016/j.bpj.2011.09.040">10.1016/j.bpj.2011.09.040</a>
  apa: Park, H., Oikonomou, P., Guet, C. C., &#38; Cluzel, P. (2011). Noise underlies
    switching behavior of the bacterial flagellum. <i>Biophysical Journal</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.bpj.2011.09.040">https://doi.org/10.1016/j.bpj.2011.09.040</a>
  chicago: Park, Heungwon, Panos Oikonomou, Calin C Guet, and Philippe Cluzel. “Noise
    Underlies Switching Behavior of the Bacterial Flagellum.” <i>Biophysical Journal</i>.
    Elsevier, 2011. <a href="https://doi.org/10.1016/j.bpj.2011.09.040">https://doi.org/10.1016/j.bpj.2011.09.040</a>.
  ieee: H. Park, P. Oikonomou, C. C. Guet, and P. Cluzel, “Noise underlies switching
    behavior of the bacterial flagellum,” <i>Biophysical Journal</i>, vol. 101, no.
    10. Elsevier, pp. 2336–2340, 2011.
  ista: Park H, Oikonomou P, Guet CC, Cluzel P. 2011. Noise underlies switching behavior
    of the bacterial flagellum. Biophysical Journal. 101(10), 2336–2340.
  mla: Park, Heungwon, et al. “Noise Underlies Switching Behavior of the Bacterial
    Flagellum.” <i>Biophysical Journal</i>, vol. 101, no. 10, Elsevier, 2011, pp.
    2336–40, doi:<a href="https://doi.org/10.1016/j.bpj.2011.09.040">10.1016/j.bpj.2011.09.040</a>.
  short: H. Park, P. Oikonomou, C.C. Guet, P. Cluzel, Biophysical Journal 101 (2011)
    2336–2340.
date_created: 2019-05-28T11:54:29Z
date_published: 2011-11-16T00:00:00Z
date_updated: 2025-09-30T09:26:28Z
day: '16'
department:
- _id: CaGu
doi: 10.1016/j.bpj.2011.09.040
external_id:
  isi:
  - '000297143500008'
  pmid:
  - '22098731'
intvolume: '       101'
isi: 1
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3218319/
month: '11'
oa: 1
oa_version: Published Version
page: 2336-2340
pmid: 1
publication: Biophysical Journal
publication_identifier:
  issn:
  - 0006-3495
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Noise underlies switching behavior of the bacterial flagellum
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 101
year: '2011'
...
---
_id: '6749'
abstract:
- lang: eng
  text: This article refers to algorithms based on finite difference schemes for computing
    mean and affine curvature evolutions of digital images, introduced by Alvarez
    and Morel [L. Alvarez, J.M. Morel, “Formalization and computational aspects of
    image analysis”, Acta Numerica, pp. 159, 1994]. We discuss consistency, stability
    and convergence. Our analysis focuses on some possible choices of the parameters,
    choices that generate multiple variants in the implementations. Meaningful visual
    examples on how the algorithms actually work are provided.
author:
- first_name: Marco
  full_name: Mondelli, Marco
  id: 27EB676C-8706-11E9-9510-7717E6697425
  last_name: Mondelli
  orcid: 0000-0002-3242-7020
- first_name: Adina
  full_name: Ciomaga, Adina
  last_name: Ciomaga
citation:
  ama: Mondelli M, Ciomaga A. Finite difference schemes for MCM and AMSS. <i>Image
    Processing On Line</i>. 2011;1:127-177. doi:<a href="https://doi.org/10.5201/ipol.2011.cm_fds">10.5201/ipol.2011.cm_fds</a>
  apa: Mondelli, M., &#38; Ciomaga, A. (2011). Finite difference schemes for MCM and
    AMSS. <i>Image Processing On Line</i>. IPOL Image Processing On Line. <a href="https://doi.org/10.5201/ipol.2011.cm_fds">https://doi.org/10.5201/ipol.2011.cm_fds</a>
  chicago: Mondelli, Marco, and Adina Ciomaga. “Finite Difference Schemes for MCM
    and AMSS.” <i>Image Processing On Line</i>. IPOL Image Processing On Line, 2011.
    <a href="https://doi.org/10.5201/ipol.2011.cm_fds">https://doi.org/10.5201/ipol.2011.cm_fds</a>.
  ieee: M. Mondelli and A. Ciomaga, “Finite difference schemes for MCM and AMSS,”
    <i>Image Processing On Line</i>, vol. 1. IPOL Image Processing On Line, pp. 127–177,
    2011.
  ista: Mondelli M, Ciomaga A. 2011. Finite difference schemes for MCM and AMSS. Image
    Processing On Line. 1, 127–177.
  mla: Mondelli, Marco, and Adina Ciomaga. “Finite Difference Schemes for MCM and
    AMSS.” <i>Image Processing On Line</i>, vol. 1, IPOL Image Processing On Line,
    2011, pp. 127–77, doi:<a href="https://doi.org/10.5201/ipol.2011.cm_fds">10.5201/ipol.2011.cm_fds</a>.
  short: M. Mondelli, A. Ciomaga, Image Processing On Line 1 (2011) 127–177.
date_created: 2019-07-31T09:44:24Z
date_published: 2011-09-13T00:00:00Z
date_updated: 2021-01-12T08:08:50Z
day: '13'
ddc:
- '000'
doi: 10.5201/ipol.2011.cm_fds
extern: '1'
file:
- access_level: open_access
  checksum: 910710811224c633202791e0c217d05d
  content_type: application/pdf
  creator: dernst
  date_created: 2019-08-01T06:34:21Z
  date_updated: 2020-07-14T12:47:39Z
  file_id: '6751'
  file_name: 2011_IPOL_Mondelli.pdf
  file_size: 2793903
  relation: main_file
file_date_updated: 2020-07-14T12:47:39Z
has_accepted_license: '1'
intvolume: '         1'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 127-177
publication: Image Processing On Line
publication_identifier:
  issn:
  - 2105-1232
publication_status: published
publisher: IPOL Image Processing On Line
quality_controlled: '1'
status: public
title: Finite difference schemes for MCM and AMSS
tmp:
  image: /images/cc_by_nc_sa.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
    BY-NC-SA 4.0)
  short: CC BY-NC-SA (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1
year: '2011'
...
---
_id: '6767'
abstract:
- lang: eng
  text: "In the present paper we give a thorough analysis of two finite difference
    schemes for the Mean Curvature Motion and its affine variant, the Affine Morphological
    Scale Space, schemes introduced in the Image Processing framework. This analysis
    brings in a series of parameters that allow us to compute an accurate discrete
    evolution of curvature motions.\r\nThe choice of these parameters is based on
    intrinsic geometric properties of the evolution equations for linear, radial and
    elliptical functions. In the last part we present several examples, underlining
    the main advantages of the algorithms (the removal of pixelization effects and
    JPEG artifacts) as well as their major drawbacks (absence of contrast invariance
    and grid dependence). A detailed explanatory report, the ANSI C implementations
    and an on-line demo can be found at http://www.ipol.im/."
author:
- first_name: Marco
  full_name: Mondelli, Marco
  id: 27EB676C-8706-11E9-9510-7717E6697425
  last_name: Mondelli
  orcid: 0000-0002-3242-7020
- first_name: Adina
  full_name: Ciomaga, Adina
  last_name: Ciomaga
citation:
  ama: 'Mondelli M, Ciomaga A. On finite difference schemes for curvature motions.
    In: <i>Proceedings of the International Student Conference on Pure and Applied
    Mathematics</i>. Editura Universitãtii „Alexandru Ioan Cuza” Iasi; 2011:137-156.
    doi:<a href="https://doi.org/10.13140/2.1.1862.4646">10.13140/2.1.1862.4646</a>'
  apa: 'Mondelli, M., &#38; Ciomaga, A. (2011). On finite difference schemes for curvature
    motions. In <i>Proceedings of the International Student Conference on Pure and
    Applied Mathematics</i> (pp. 137–156). Iasi, Romania: Editura Universitãtii „Alexandru
    Ioan Cuza” Iasi. <a href="https://doi.org/10.13140/2.1.1862.4646">https://doi.org/10.13140/2.1.1862.4646</a>'
  chicago: Mondelli, Marco, and Adina Ciomaga. “On Finite Difference Schemes for Curvature
    Motions.” In <i>Proceedings of the International Student Conference on Pure and
    Applied Mathematics</i>, 137–56. Editura Universitãtii „Alexandru Ioan Cuza” Iasi,
    2011. <a href="https://doi.org/10.13140/2.1.1862.4646">https://doi.org/10.13140/2.1.1862.4646</a>.
  ieee: M. Mondelli and A. Ciomaga, “On finite difference schemes for curvature motions,”
    in <i>Proceedings of the International Student Conference on Pure and Applied
    Mathematics</i>, Iasi, Romania, 2011, pp. 137–156.
  ista: 'Mondelli M, Ciomaga A. 2011. On finite difference schemes for curvature motions.
    Proceedings of the International Student Conference on Pure and Applied Mathematics.
    ISCOPAM: International Student Conference on Pure and Applied Mathematics, 137–156.'
  mla: Mondelli, Marco, and Adina Ciomaga. “On Finite Difference Schemes for Curvature
    Motions.” <i>Proceedings of the International Student Conference on Pure and Applied
    Mathematics</i>, Editura Universitãtii „Alexandru Ioan Cuza” Iasi, 2011, pp. 137–56,
    doi:<a href="https://doi.org/10.13140/2.1.1862.4646">10.13140/2.1.1862.4646</a>.
  short: M. Mondelli, A. Ciomaga, in:, Proceedings of the International Student Conference
    on Pure and Applied Mathematics, Editura Universitãtii „Alexandru Ioan Cuza” Iasi,
    2011, pp. 137–156.
conference:
  end_date: 2010-07-16
  location: Iasi, Romania
  name: 'ISCOPAM: International Student Conference on Pure and Applied Mathematics'
  start_date: 2010-07-12
date_created: 2019-08-05T12:20:58Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2021-01-12T08:08:56Z
day: '01'
doi: 10.13140/2.1.1862.4646
extern: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: 137-156
publication: Proceedings of the International Student Conference on Pure and Applied
  Mathematics
publication_identifier:
  isbn:
  - 978-973-703-602-5
publication_status: published
publisher: Editura Universitãtii „Alexandru Ioan Cuza” Iasi
quality_controlled: '1'
status: public
title: On finite difference schemes for curvature motions
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '7076'
abstract:
- lang: eng
  text: Iron is a ubiquitous impurity in metamict (radiation-damaged and partially
    amorphized) materials such as titanite (CaSiTiO5). Using 57Fe Mössbauer spectroscopy
    we find that iron in metamict titanite is partitioned between amorphous and crystalline
    regions based on valence. Trivalent iron exists in the crystalline titanite matrix
    whereas divalent iron exists almost exclusively in radiation-amorphized regions.
    We find that the relative abundances of the oxidation states correlate with the
    volume fraction of amorphous and crystalline regions. Our data also show that
    oxidation of iron proceeds along with the recrystallization of the amorphized
    regions. Recrystallization is confirmed to occur over the range 700 °C < T < 925 °C,
    and no further structural changes are observed at higher temperatures. It is surprising
    that our Mössbauer measurements show divalent iron to be surrounded by titanite
    with a high degree of short-range structural order in the amorphized regions.
    This observation is fundamentally different from other metamict materials such
    as zircon (ZrSiO4), where amorphized regions show no short-range order.
article_number: '105402'
article_processing_charge: No
article_type: original
author:
- first_name: E K H
  full_name: Salje, E K H
  last_name: Salje
- first_name: D J
  full_name: Safarik, D J
  last_name: Safarik
- first_name: R D
  full_name: Taylor, R D
  last_name: Taylor
- first_name: M P
  full_name: Pasternak, M P
  last_name: Pasternak
- first_name: Kimberly A
  full_name: Modic, Kimberly A
  id: 13C26AC0-EB69-11E9-87C6-5F3BE6697425
  last_name: Modic
  orcid: 0000-0001-9760-3147
- first_name: L A
  full_name: Groat, L A
  last_name: Groat
- first_name: J C
  full_name: Lashley, J C
  last_name: Lashley
citation:
  ama: 'Salje EKH, Safarik DJ, Taylor RD, et al. Determination of iron sites and the
    amount of amorphization in radiation-damaged titanite (CaSiTiO5). <i>Journal of
    Physics: Condensed Matter</i>. 2011;23(10). doi:<a href="https://doi.org/10.1088/0953-8984/23/10/105402">10.1088/0953-8984/23/10/105402</a>'
  apa: 'Salje, E. K. H., Safarik, D. J., Taylor, R. D., Pasternak, M. P., Modic, K.
    A., Groat, L. A., &#38; Lashley, J. C. (2011). Determination of iron sites and
    the amount of amorphization in radiation-damaged titanite (CaSiTiO5). <i>Journal
    of Physics: Condensed Matter</i>. IOP Publishing. <a href="https://doi.org/10.1088/0953-8984/23/10/105402">https://doi.org/10.1088/0953-8984/23/10/105402</a>'
  chicago: 'Salje, E K H, D J Safarik, R D Taylor, M P Pasternak, Kimberly A Modic,
    L A Groat, and J C Lashley. “Determination of Iron Sites and the Amount of Amorphization
    in Radiation-Damaged Titanite (CaSiTiO5).” <i>Journal of Physics: Condensed Matter</i>.
    IOP Publishing, 2011. <a href="https://doi.org/10.1088/0953-8984/23/10/105402">https://doi.org/10.1088/0953-8984/23/10/105402</a>.'
  ieee: 'E. K. H. Salje <i>et al.</i>, “Determination of iron sites and the amount
    of amorphization in radiation-damaged titanite (CaSiTiO5),” <i>Journal of Physics:
    Condensed Matter</i>, vol. 23, no. 10. IOP Publishing, 2011.'
  ista: 'Salje EKH, Safarik DJ, Taylor RD, Pasternak MP, Modic KA, Groat LA, Lashley
    JC. 2011. Determination of iron sites and the amount of amorphization in radiation-damaged
    titanite (CaSiTiO5). Journal of Physics: Condensed Matter. 23(10), 105402.'
  mla: 'Salje, E. K. H., et al. “Determination of Iron Sites and the Amount of Amorphization
    in Radiation-Damaged Titanite (CaSiTiO5).” <i>Journal of Physics: Condensed Matter</i>,
    vol. 23, no. 10, 105402, IOP Publishing, 2011, doi:<a href="https://doi.org/10.1088/0953-8984/23/10/105402">10.1088/0953-8984/23/10/105402</a>.'
  short: 'E.K.H. Salje, D.J. Safarik, R.D. Taylor, M.P. Pasternak, K.A. Modic, L.A.
    Groat, J.C. Lashley, Journal of Physics: Condensed Matter 23 (2011).'
date_created: 2019-11-19T13:39:30Z
date_published: 2011-02-21T00:00:00Z
date_updated: 2021-01-12T08:11:43Z
day: '21'
doi: 10.1088/0953-8984/23/10/105402
extern: '1'
intvolume: '        23'
issue: '10'
language:
- iso: eng
month: '02'
oa_version: None
publication: 'Journal of Physics: Condensed Matter'
publication_identifier:
  issn:
  - 0953-8984
  - 1361-648X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
status: public
title: Determination of iron sites and the amount of amorphization in radiation-damaged
  titanite (CaSiTiO5)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 23
year: '2011'
...
---
_id: '7077'
abstract:
- lang: eng
  text: Pb, Te, Ag and Se, when reacted in a 1:1:x:1 (x = 1.9, 2.0, 2.01) molar ratio,
    form a two phase composite which consists of a phase which crystallizes in the
    fcc cubic PbSe structure and a phase that crystallizes in the Ag2Te structure.
    In this article, we demonstrate that by varying the Ag concentration, we can manipulate
    which variant of the Ag2Te structure stabilizes at room temperature (monoclinic
    α-Ag2Te or cubic β-Ag1.9Te) and can consequently manipulate the electrical and
    thermal transport behavior of the composite and hence the thermoelectric performance.
    Additionally, we show that Cu-doping results in an overall improvement in thermoelectric
    performance. Our results suggest that formation of composites is a viable path
    for achieving a phonon-glass-electron-crystal (PGEC) alloy.
article_processing_charge: No
article_type: original
author:
- first_name: J.
  full_name: Capps, J.
  last_name: Capps
- first_name: B.
  full_name: Ma, B.
  last_name: Ma
- first_name: T.
  full_name: Drye, T.
  last_name: Drye
- first_name: C.
  full_name: Nucklos, C.
  last_name: Nucklos
- first_name: S.
  full_name: Lindsey, S.
  last_name: Lindsey
- first_name: D.
  full_name: Rhodes, D.
  last_name: Rhodes
- first_name: Q.
  full_name: Zhang, Q.
  last_name: Zhang
- first_name: Kimberly A
  full_name: Modic, Kimberly A
  id: 13C26AC0-EB69-11E9-87C6-5F3BE6697425
  last_name: Modic
  orcid: 0000-0001-9760-3147
- first_name: S.
  full_name: Cawthorne, S.
  last_name: Cawthorne
- first_name: F.
  full_name: Drymiotis, F.
  last_name: Drymiotis
citation:
  ama: Capps J, Ma B, Drye T, et al. The effect of Ag concentration on the structural,
    electrical and thermal transport behavior of Pb:Te:Ag:Se mixtures and improvement
    of thermoelectric performance via Cu doping. <i>Journal of Alloys and Compounds</i>.
    2011;509(5):1544-1549. doi:<a href="https://doi.org/10.1016/j.jallcom.2010.10.187">10.1016/j.jallcom.2010.10.187</a>
  apa: Capps, J., Ma, B., Drye, T., Nucklos, C., Lindsey, S., Rhodes, D., … Drymiotis,
    F. (2011). The effect of Ag concentration on the structural, electrical and thermal
    transport behavior of Pb:Te:Ag:Se mixtures and improvement of thermoelectric performance
    via Cu doping. <i>Journal of Alloys and Compounds</i>. Elsevier. <a href="https://doi.org/10.1016/j.jallcom.2010.10.187">https://doi.org/10.1016/j.jallcom.2010.10.187</a>
  chicago: Capps, J., B. Ma, T. Drye, C. Nucklos, S. Lindsey, D. Rhodes, Q. Zhang,
    Kimberly A Modic, S. Cawthorne, and F. Drymiotis. “The Effect of Ag Concentration
    on the Structural, Electrical and Thermal Transport Behavior of Pb:Te:Ag:Se Mixtures
    and Improvement of Thermoelectric Performance via Cu Doping.” <i>Journal of Alloys
    and Compounds</i>. Elsevier, 2011. <a href="https://doi.org/10.1016/j.jallcom.2010.10.187">https://doi.org/10.1016/j.jallcom.2010.10.187</a>.
  ieee: J. Capps <i>et al.</i>, “The effect of Ag concentration on the structural,
    electrical and thermal transport behavior of Pb:Te:Ag:Se mixtures and improvement
    of thermoelectric performance via Cu doping,” <i>Journal of Alloys and Compounds</i>,
    vol. 509, no. 5. Elsevier, pp. 1544–1549, 2011.
  ista: Capps J, Ma B, Drye T, Nucklos C, Lindsey S, Rhodes D, Zhang Q, Modic KA,
    Cawthorne S, Drymiotis F. 2011. The effect of Ag concentration on the structural,
    electrical and thermal transport behavior of Pb:Te:Ag:Se mixtures and improvement
    of thermoelectric performance via Cu doping. Journal of Alloys and Compounds.
    509(5), 1544–1549.
  mla: Capps, J., et al. “The Effect of Ag Concentration on the Structural, Electrical
    and Thermal Transport Behavior of Pb:Te:Ag:Se Mixtures and Improvement of Thermoelectric
    Performance via Cu Doping.” <i>Journal of Alloys and Compounds</i>, vol. 509,
    no. 5, Elsevier, 2011, pp. 1544–49, doi:<a href="https://doi.org/10.1016/j.jallcom.2010.10.187">10.1016/j.jallcom.2010.10.187</a>.
  short: J. Capps, B. Ma, T. Drye, C. Nucklos, S. Lindsey, D. Rhodes, Q. Zhang, K.A.
    Modic, S. Cawthorne, F. Drymiotis, Journal of Alloys and Compounds 509 (2011)
    1544–1549.
date_created: 2019-11-19T13:45:37Z
date_published: 2011-02-03T00:00:00Z
date_updated: 2021-01-12T08:11:44Z
day: '03'
doi: 10.1016/j.jallcom.2010.10.187
extern: '1'
intvolume: '       509'
issue: '5'
language:
- iso: eng
month: '02'
oa_version: None
page: 1544-1549
publication: Journal of Alloys and Compounds
publication_identifier:
  issn:
  - 0925-8388
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: The effect of Ag concentration on the structural, electrical and thermal transport
  behavior of Pb:Te:Ag:Se mixtures and improvement of thermoelectric performance via
  Cu doping
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 509
year: '2011'
...
