---
_id: '5386'
abstract:
- lang: eng
  text: 'We introduce TopoCut: a new way to integrate knowledge about topological
    properties (TPs) into random field image segmentation model. Instead of including
    TPs as additional constraints during minimization of the energy function, we devise
    an efficient algorithm for modifying the unary potentials such that the resulting
    segmentation is guaranteed with the desired properties. Our method is more flexible
    in the sense that it handles more topology constraints than previous methods,
    which were only able to enforce pairwise or global connectivity. In particular,
    our method is very fast, making it for the first time possible to enforce global
    topological properties in practical image segmentation tasks.'
alternative_title:
- IST Austria Technical Report
author:
- first_name: Chao
  full_name: Chen, Chao
  id: 3E92416E-F248-11E8-B48F-1D18A9856A87
  last_name: Chen
- first_name: Daniel
  full_name: Freedman, Daniel
  last_name: Freedman
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
citation:
  ama: Chen C, Freedman D, Lampert C. <i>Enforcing Topological Constraints in Random
    Field Image Segmentation</i>. IST Austria; 2011. doi:<a href="https://doi.org/10.15479/AT:IST-2011-0002">10.15479/AT:IST-2011-0002</a>
  apa: Chen, C., Freedman, D., &#38; Lampert, C. (2011). <i>Enforcing topological
    constraints in random field image segmentation</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2011-0002">https://doi.org/10.15479/AT:IST-2011-0002</a>
  chicago: Chen, Chao, Daniel Freedman, and Christoph Lampert. <i>Enforcing Topological
    Constraints in Random Field Image Segmentation</i>. IST Austria, 2011. <a href="https://doi.org/10.15479/AT:IST-2011-0002">https://doi.org/10.15479/AT:IST-2011-0002</a>.
  ieee: C. Chen, D. Freedman, and C. Lampert, <i>Enforcing topological constraints
    in random field image segmentation</i>. IST Austria, 2011.
  ista: Chen C, Freedman D, Lampert C. 2011. Enforcing topological constraints in
    random field image segmentation, IST Austria, 69p.
  mla: Chen, Chao, et al. <i>Enforcing Topological Constraints in Random Field Image
    Segmentation</i>. IST Austria, 2011, doi:<a href="https://doi.org/10.15479/AT:IST-2011-0002">10.15479/AT:IST-2011-0002</a>.
  short: C. Chen, D. Freedman, C. Lampert, Enforcing Topological Constraints in Random
    Field Image Segmentation, IST Austria, 2011.
date_created: 2018-12-12T11:39:02Z
date_published: 2011-03-28T00:00:00Z
date_updated: 2024-10-09T20:54:30Z
day: '28'
ddc:
- '000'
department:
- _id: ChLa
doi: 10.15479/AT:IST-2011-0002
file:
- access_level: open_access
  checksum: ad64c2add5fe2ad10e9d5c669f3f9526
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:34Z
  date_updated: 2020-07-14T12:46:41Z
  file_id: '5495'
  file_name: IST-2011-0002_IST-2011-0002.pdf
  file_size: 26390601
  relation: main_file
file_date_updated: 2020-07-14T12:46:41Z
has_accepted_license: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: '69'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '22'
related_material:
  record:
  - id: '3336'
    relation: later_version
    status: public
status: public
title: Enforcing topological constraints in random field image segmentation
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '5387'
abstract:
- lang: eng
  text: We consider Markov Decision Processes (MDPs) with mean-payoff parity and energy
    parity objectives. In system design, the parity objective is used to encode ω-regular
    specifications, and the mean-payoff and energy objectives can be used to model
    quantitative resource constraints. The energy condition re- quires that the resource
    level never drops below 0, and the mean-payoff condi- tion requires that the limit-average
    value of the resource consumption is within a threshold. While these two (energy
    and mean-payoff) classical conditions are equivalent for two-player games, we
    show that they differ for MDPs. We show that the problem of deciding whether a
    state is almost-sure winning (i.e., winning with probability 1) in energy parity
    MDPs is in NP ∩ coNP, while for mean- payoff parity MDPs, the problem is solvable
    in polynomial time, improving a recent PSPACE bound.
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Laurent
  full_name: Doyen, Laurent
  last_name: Doyen
citation:
  ama: Chatterjee K, Doyen L. <i>Energy and Mean-Payoff Parity Markov Decision Processes</i>.
    IST Austria; 2011. doi:<a href="https://doi.org/10.15479/AT:IST-2011-0001">10.15479/AT:IST-2011-0001</a>
  apa: Chatterjee, K., &#38; Doyen, L. (2011). <i>Energy and mean-payoff parity Markov
    decision processes</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2011-0001">https://doi.org/10.15479/AT:IST-2011-0001</a>
  chicago: Chatterjee, Krishnendu, and Laurent Doyen. <i>Energy and Mean-Payoff Parity
    Markov Decision Processes</i>. IST Austria, 2011. <a href="https://doi.org/10.15479/AT:IST-2011-0001">https://doi.org/10.15479/AT:IST-2011-0001</a>.
  ieee: K. Chatterjee and L. Doyen, <i>Energy and mean-payoff parity Markov decision
    processes</i>. IST Austria, 2011.
  ista: Chatterjee K, Doyen L. 2011. Energy and mean-payoff parity Markov decision
    processes, IST Austria, 20p.
  mla: Chatterjee, Krishnendu, and Laurent Doyen. <i>Energy and Mean-Payoff Parity
    Markov Decision Processes</i>. IST Austria, 2011, doi:<a href="https://doi.org/10.15479/AT:IST-2011-0001">10.15479/AT:IST-2011-0001</a>.
  short: K. Chatterjee, L. Doyen, Energy and Mean-Payoff Parity Markov Decision Processes,
    IST Austria, 2011.
date_created: 2018-12-12T11:39:02Z
date_published: 2011-02-16T00:00:00Z
date_updated: 2025-04-15T08:12:14Z
day: '16'
ddc:
- '000'
- '005'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2011-0001
file:
- access_level: open_access
  checksum: 824d6c70e6d3feb3e836b009e0b3cf73
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:52:57Z
  date_updated: 2020-07-14T12:46:41Z
  file_id: '5458'
  file_name: IST-2011-0001_IST-2011-0001.pdf
  file_size: 329976
  relation: main_file
file_date_updated: 2020-07-14T12:46:41Z
has_accepted_license: '1'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: '20'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '23'
related_material:
  record:
  - id: '3345'
    relation: later_version
    status: public
status: public
title: Energy and mean-payoff parity Markov decision processes
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '580'
author:
- first_name: Onur
  full_name: Onur Hosten
  id: 4C02D85E-F248-11E8-B48F-1D18A9856A87
  last_name: Hosten
  orcid: 0000-0002-2031-204X
citation:
  ama: 'Hosten O. Quantum physics: How to catch a wave. <i>Nature</i>. 2011;474(7350):170-171.
    doi:<a href="https://doi.org/10.1038/474170a">10.1038/474170a</a>'
  apa: 'Hosten, O. (2011). Quantum physics: How to catch a wave. <i>Nature</i>. Nature
    Publishing Group. <a href="https://doi.org/10.1038/474170a">https://doi.org/10.1038/474170a</a>'
  chicago: 'Hosten, Onur. “Quantum Physics: How to Catch a Wave.” <i>Nature</i>. Nature
    Publishing Group, 2011. <a href="https://doi.org/10.1038/474170a">https://doi.org/10.1038/474170a</a>.'
  ieee: 'O. Hosten, “Quantum physics: How to catch a wave,” <i>Nature</i>, vol. 474,
    no. 7350. Nature Publishing Group, pp. 170–171, 2011.'
  ista: 'Hosten O. 2011. Quantum physics: How to catch a wave. Nature. 474(7350),
    170–171.'
  mla: 'Hosten, Onur. “Quantum Physics: How to Catch a Wave.” <i>Nature</i>, vol.
    474, no. 7350, Nature Publishing Group, 2011, pp. 170–71, doi:<a href="https://doi.org/10.1038/474170a">10.1038/474170a</a>.'
  short: O. Hosten, Nature 474 (2011) 170–171.
date_created: 2018-12-11T11:47:18Z
date_published: 2011-06-08T00:00:00Z
date_updated: 2021-01-12T08:03:34Z
day: '08'
doi: 10.1038/474170a
extern: 1
intvolume: '       474'
issue: '7350'
month: '06'
page: 170 - 171
publication: Nature
publication_status: published
publisher: Nature Publishing Group
publist_id: '7224'
quality_controlled: 0
status: public
title: 'Quantum physics: How to catch a wave'
type: journal_article
volume: 474
year: '2011'
...
---
_id: '585'
abstract:
- lang: eng
  text: |+
    We present two independent schemes for the precise focusing of orthogonal polarizations of light at arbitrary relative locations. The first scheme uses a polarization Sagnac interferometer, the second a set of three birefringent elements.

alternative_title:
- Optics InfoBase Conference Papers
author:
- first_name: David
  full_name: Schmid, David
  last_name: Schmid
- first_name: Shiraz
  full_name: Hazrat, Shiraz
  last_name: Hazrat
- first_name: Radhika
  full_name: Rangarajan, Radhika
  last_name: Rangarajan
- first_name: Onur
  full_name: Onur Hosten
  id: 4C02D85E-F248-11E8-B48F-1D18A9856A87
  last_name: Hosten
  orcid: 0000-0002-2031-204X
- first_name: Stephan
  full_name: Quint, Stephan
  last_name: Quint
- first_name: Paul
  full_name: Kwiat, Paul G
  last_name: Kwiat
citation:
  ama: 'Schmid D, Hazrat S, Rangarajan R, Hosten O, Quint S, Kwiat P. Methods towards
    achieving precise birefringent focusing. In: OSA; 2011. doi:<a href="https://doi.org/10.1364/CLEO_AT.2011.JThB130">10.1364/CLEO_AT.2011.JThB130</a>'
  apa: 'Schmid, D., Hazrat, S., Rangarajan, R., Hosten, O., Quint, S., &#38; Kwiat,
    P. (2011). Methods towards achieving precise birefringent focusing. Presented
    at the QELS: Quantum Electronics and Laser Science, OSA. <a href="https://doi.org/10.1364/CLEO_AT.2011.JThB130">https://doi.org/10.1364/CLEO_AT.2011.JThB130</a>'
  chicago: Schmid, David, Shiraz Hazrat, Radhika Rangarajan, Onur Hosten, Stephan
    Quint, and Paul Kwiat. “Methods towards Achieving Precise Birefringent Focusing.”
    OSA, 2011. <a href="https://doi.org/10.1364/CLEO_AT.2011.JThB130">https://doi.org/10.1364/CLEO_AT.2011.JThB130</a>.
  ieee: 'D. Schmid, S. Hazrat, R. Rangarajan, O. Hosten, S. Quint, and P. Kwiat, “Methods
    towards achieving precise birefringent focusing,” presented at the QELS: Quantum
    Electronics and Laser Science, 2011.'
  ista: 'Schmid D, Hazrat S, Rangarajan R, Hosten O, Quint S, Kwiat P. 2011. Methods
    towards achieving precise birefringent focusing. QELS: Quantum Electronics and
    Laser Science, Optics InfoBase Conference Papers, .'
  mla: Schmid, David, et al. <i>Methods towards Achieving Precise Birefringent Focusing</i>.
    OSA, 2011, doi:<a href="https://doi.org/10.1364/CLEO_AT.2011.JThB130">10.1364/CLEO_AT.2011.JThB130</a>.
  short: D. Schmid, S. Hazrat, R. Rangarajan, O. Hosten, S. Quint, P. Kwiat, in:,
    OSA, 2011.
conference:
  name: 'QELS: Quantum Electronics and Laser Science'
date_created: 2018-12-11T11:47:20Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2021-01-12T08:03:44Z
day: '01'
doi: 10.1364/CLEO_AT.2011.JThB130
extern: 1
month: '01'
publication_status: published
publisher: OSA
publist_id: '7220'
quality_controlled: 0
status: public
title: Methods towards achieving precise birefringent focusing
type: conference
year: '2011'
...
...
---
_id: '586'
abstract:
- lang: eng
  text: We demonstrate a Raman laser using cold Rb87 atoms as the gain medium in a
    high-finesse optical cavity. We observe robust continuous wave lasing in the atypical
    regime where single atoms can considerably affect the cavity field. Consequently,
    we discover unusual lasing threshold behavior in the system causing jumps in lasing
    power, and propose a model to explain the effect. We also measure the intermode
    laser linewidth, and observe values as low as 80Hz. The tunable gain properties
    of this laser suggest multiple directions for future research.
author:
- first_name: Geert
  full_name: Vrijsen, Geert
  last_name: Vrijsen
- first_name: Onur
  full_name: Onur Hosten
  id: 4C02D85E-F248-11E8-B48F-1D18A9856A87
  last_name: Hosten
  orcid: 0000-0002-2031-204X
- first_name: Jongmin
  full_name: Lee, Jongmin
  last_name: Lee
- first_name: Simon
  full_name: Bernon, Simon
  last_name: Bernon
- first_name: Mark
  full_name: Kasevich, Mark A
  last_name: Kasevich
citation:
  ama: Vrijsen G, Hosten O, Lee J, Bernon S, Kasevich M. Raman lasing with a cold
    atom gain medium in a high-finesse optical cavity. <i>Physical Review Letters</i>.
    2011;107(6). doi:<a href="https://doi.org/10.1103/PhysRevLett.107.063904">10.1103/PhysRevLett.107.063904</a>
  apa: Vrijsen, G., Hosten, O., Lee, J., Bernon, S., &#38; Kasevich, M. (2011). Raman
    lasing with a cold atom gain medium in a high-finesse optical cavity. <i>Physical
    Review Letters</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevLett.107.063904">https://doi.org/10.1103/PhysRevLett.107.063904</a>
  chicago: Vrijsen, Geert, Onur Hosten, Jongmin Lee, Simon Bernon, and Mark Kasevich.
    “Raman Lasing with a Cold Atom Gain Medium in a High-Finesse Optical Cavity.”
    <i>Physical Review Letters</i>. American Physical Society, 2011. <a href="https://doi.org/10.1103/PhysRevLett.107.063904">https://doi.org/10.1103/PhysRevLett.107.063904</a>.
  ieee: G. Vrijsen, O. Hosten, J. Lee, S. Bernon, and M. Kasevich, “Raman lasing with
    a cold atom gain medium in a high-finesse optical cavity,” <i>Physical Review
    Letters</i>, vol. 107, no. 6. American Physical Society, 2011.
  ista: Vrijsen G, Hosten O, Lee J, Bernon S, Kasevich M. 2011. Raman lasing with
    a cold atom gain medium in a high-finesse optical cavity. Physical Review Letters.
    107(6).
  mla: Vrijsen, Geert, et al. “Raman Lasing with a Cold Atom Gain Medium in a High-Finesse
    Optical Cavity.” <i>Physical Review Letters</i>, vol. 107, no. 6, American Physical
    Society, 2011, doi:<a href="https://doi.org/10.1103/PhysRevLett.107.063904">10.1103/PhysRevLett.107.063904</a>.
  short: G. Vrijsen, O. Hosten, J. Lee, S. Bernon, M. Kasevich, Physical Review Letters
    107 (2011).
date_created: 2018-12-11T11:47:20Z
date_published: 2011-08-04T00:00:00Z
date_updated: 2021-01-12T08:05:05Z
day: '04'
doi: 10.1103/PhysRevLett.107.063904
extern: 1
intvolume: '       107'
issue: '6'
month: '08'
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '7223'
quality_controlled: 0
status: public
title: Raman lasing with a cold atom gain medium in a high-finesse optical cavity
type: journal_article
volume: 107
year: '2011'
...
---
_id: '597'
abstract:
- lang: eng
  text: The macromolecular assembly required to initiate transcription of protein-coding
    genes, known as the Pre-Initiation Complex (PIC), consists of multiple protein
    complexes and is approximately 3.5 MDa in size. At the heart of this assembly
    is the Mediator complex, which helps regulate PIC activity and interacts with
    the RNA polymerase II (pol II) enzyme. The structure of the human Mediator-pol
    II interface is not well-characterized, whereas attempts to structurally define
    the Mediator-pol II interaction in yeast have relied on incomplete assemblies
    of Mediator and/or pol II and have yielded inconsistent interpretations. We have
    assembled the complete, 1.9 MDa human Mediator-pol II-TFIIF complex from purified
    components and have characterized its structural organization using cryo-electron
    microscopy and single-particle reconstruction techniques. The orientation of pol
    II within this assembly was determined by crystal structure docking and further
    validated with projection matching experiments, allowing the structural organization
    of the entire human PIC to be envisioned. Significantly, pol II orientation within
    the Mediator-pol II-TFIIF assembly can be reconciled with past studies that determined
    the location of other PIC components relative to pol II itself. Pol II surfaces
    required for interacting with TFIIB, TFIIE, and promoter DNA (i.e., the pol II
    cleft) are exposed within the Mediator-pol II-TFIIF structure; RNA exit is unhindered
    along the RPB4/7 subunits; upstream and downstream DNA is accessible for binding
    additional factors; and no major structural re-organization is necessary to accommodate
    the large, multi-subunit TFIIH or TFIID complexes. The data also reveal how pol
    II binding excludes Mediator-CDK8 subcomplex interactions and provide a structural
    basis for Mediator-dependent control of PIC assembly and function. Finally, parallel
    structural analysis of Mediator-pol II complexes lacking TFIIF reveal that TFIIF
    plays a key role in stabilizing pol II orientation within the assembly.
article_processing_charge: No
author:
- first_name: Carrie A
  full_name: Bernecky, Carrie A
  id: 2CB9DFE2-F248-11E8-B48F-1D18A9856A87
  last_name: Bernecky
  orcid: 0000-0003-0893-7036
- first_name: Patricia
  full_name: Grob, Patricia
  last_name: Grob
- first_name: Christopher
  full_name: Ebmeier, Christopher
  last_name: Ebmeier
- first_name: Eva
  full_name: Nogales, Eva
  last_name: Nogales
- first_name: Dylan
  full_name: Taatjes, Dylan
  last_name: Taatjes
citation:
  ama: Bernecky C, Grob P, Ebmeier C, Nogales E, Taatjes D. Molecular architecture
    of the human Mediator-RNA polymerase II-TFIIF assembly. <i>PLoS Biology</i>. 2011;9(3).
    doi:<a href="https://doi.org/10.1371/journal.pbio.1000603">10.1371/journal.pbio.1000603</a>
  apa: Bernecky, C., Grob, P., Ebmeier, C., Nogales, E., &#38; Taatjes, D. (2011).
    Molecular architecture of the human Mediator-RNA polymerase II-TFIIF assembly.
    <i>PLoS Biology</i>. Public Library of Science. <a href="https://doi.org/10.1371/journal.pbio.1000603">https://doi.org/10.1371/journal.pbio.1000603</a>
  chicago: Bernecky, Carrie, Patricia Grob, Christopher Ebmeier, Eva Nogales, and
    Dylan Taatjes. “Molecular Architecture of the Human Mediator-RNA Polymerase II-TFIIF
    Assembly.” <i>PLoS Biology</i>. Public Library of Science, 2011. <a href="https://doi.org/10.1371/journal.pbio.1000603">https://doi.org/10.1371/journal.pbio.1000603</a>.
  ieee: C. Bernecky, P. Grob, C. Ebmeier, E. Nogales, and D. Taatjes, “Molecular architecture
    of the human Mediator-RNA polymerase II-TFIIF assembly,” <i>PLoS Biology</i>,
    vol. 9, no. 3. Public Library of Science, 2011.
  ista: Bernecky C, Grob P, Ebmeier C, Nogales E, Taatjes D. 2011. Molecular architecture
    of the human Mediator-RNA polymerase II-TFIIF assembly. PLoS Biology. 9(3).
  mla: Bernecky, Carrie, et al. “Molecular Architecture of the Human Mediator-RNA
    Polymerase II-TFIIF Assembly.” <i>PLoS Biology</i>, vol. 9, no. 3, Public Library
    of Science, 2011, doi:<a href="https://doi.org/10.1371/journal.pbio.1000603">10.1371/journal.pbio.1000603</a>.
  short: C. Bernecky, P. Grob, C. Ebmeier, E. Nogales, D. Taatjes, PLoS Biology 9
    (2011).
date_created: 2018-12-11T11:47:24Z
date_published: 2011-03-01T00:00:00Z
date_updated: 2021-01-12T08:05:25Z
day: '01'
doi: 10.1371/journal.pbio.1000603
extern: '1'
intvolume: '         9'
issue: '3'
language:
- iso: eng
month: '03'
oa_version: None
publication: PLoS Biology
publication_status: published
publisher: Public Library of Science
publist_id: '7209'
status: public
title: Molecular architecture of the human Mediator-RNA polymerase II-TFIIF assembly
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 9
year: '2011'
...
---
_id: '6137'
abstract:
- lang: eng
  text: Variation in food quality and abundance requires animals to decide whether
    to stay on a poor food patch or leave in search of better food. An important question
    in behavioral ecology asks when is it optimal for an animal to leave a food patch
    it is depleting. Although optimal foraging is central to evolutionary success,
    the neural and molecular mechanisms underlying it are poorly understood. Here
    we investigate the neuronal basis for adaptive food-leaving behavior in response
    to resource depletion in Caenorhabditis elegans, and identify several of the signaling
    pathways involved. The ASE neurons, previously implicated in salt chemoattraction,
    promote food-leaving behavior via a cGMP pathway as food becomes limited. High
    ambient O2 promotes food-leaving via the O2-sensing neurons AQR, PQR, and URX.
    Ectopic activation of these neurons using channelrhodopsin is sufficient to induce
    high food-leaving behavior. In contrast, the neuropeptide receptor NPR-1, which
    regulates social behavior on food, acts in the ASE neurons, the nociceptive ASH
    neurons, and in the RMG interneuron to repress food-leaving. Finally, we show
    that neuroendocrine signaling by TGF-β/DAF-7 and neuronal insulin signaling are
    necessary for adaptive food-leaving behavior. We suggest that animals integrate
    information about their nutritional state with ambient oxygen and gustatory stimuli
    to formulate optimal foraging strategies.
author:
- first_name: K.
  full_name: Milward, K.
  last_name: Milward
- first_name: K. E.
  full_name: Busch, K. E.
  last_name: Busch
- first_name: R. J.
  full_name: Murphy, R. J.
  last_name: Murphy
- first_name: Mario
  full_name: de Bono, Mario
  id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
  last_name: de Bono
  orcid: 0000-0001-8347-0443
- first_name: B.
  full_name: Olofsson, B.
  last_name: Olofsson
citation:
  ama: Milward K, Busch KE, Murphy RJ, de Bono M, Olofsson B. Neuronal and molecular
    substrates for optimal foraging in Caenorhabditis elegans. <i>Proceedings of the
    National Academy of Sciences</i>. 2011;108(51):20672-20677. doi:<a href="https://doi.org/10.1073/pnas.1106134109">10.1073/pnas.1106134109</a>
  apa: Milward, K., Busch, K. E., Murphy, R. J., de Bono, M., &#38; Olofsson, B. (2011).
    Neuronal and molecular substrates for optimal foraging in Caenorhabditis elegans.
    <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences.
    <a href="https://doi.org/10.1073/pnas.1106134109">https://doi.org/10.1073/pnas.1106134109</a>
  chicago: Milward, K., K. E. Busch, R. J. Murphy, Mario de Bono, and B. Olofsson.
    “Neuronal and Molecular Substrates for Optimal Foraging in Caenorhabditis Elegans.”
    <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences,
    2011. <a href="https://doi.org/10.1073/pnas.1106134109">https://doi.org/10.1073/pnas.1106134109</a>.
  ieee: K. Milward, K. E. Busch, R. J. Murphy, M. de Bono, and B. Olofsson, “Neuronal
    and molecular substrates for optimal foraging in Caenorhabditis elegans,” <i>Proceedings
    of the National Academy of Sciences</i>, vol. 108, no. 51. National Academy of
    Sciences, pp. 20672–20677, 2011.
  ista: Milward K, Busch KE, Murphy RJ, de Bono M, Olofsson B. 2011. Neuronal and
    molecular substrates for optimal foraging in Caenorhabditis elegans. Proceedings
    of the National Academy of Sciences. 108(51), 20672–20677.
  mla: Milward, K., et al. “Neuronal and Molecular Substrates for Optimal Foraging
    in Caenorhabditis Elegans.” <i>Proceedings of the National Academy of Sciences</i>,
    vol. 108, no. 51, National Academy of Sciences, 2011, pp. 20672–77, doi:<a href="https://doi.org/10.1073/pnas.1106134109">10.1073/pnas.1106134109</a>.
  short: K. Milward, K.E. Busch, R.J. Murphy, M. de Bono, B. Olofsson, Proceedings
    of the National Academy of Sciences 108 (2011) 20672–20677.
date_created: 2019-03-20T14:30:06Z
date_published: 2011-12-20T00:00:00Z
date_updated: 2021-01-12T08:06:18Z
day: '20'
doi: 10.1073/pnas.1106134109
extern: '1'
external_id:
  pmid:
  - '22135454'
intvolume: '       108'
issue: '51'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3251049/
month: '12'
oa: 1
oa_version: Submitted Version
page: 20672-20677
pmid: 1
publication: Proceedings of the National Academy of Sciences
publication_identifier:
  issn:
  - 0027-8424
  - 1091-6490
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
status: public
title: Neuronal and molecular substrates for optimal foraging in Caenorhabditis elegans
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 108
year: '2011'
...
---
_id: '6138'
author:
- first_name: Andrew Jonathan
  full_name: Bretscher, Andrew Jonathan
  last_name: Bretscher
- first_name: Eiji
  full_name: Kodama-Namba, Eiji
  last_name: Kodama-Namba
- first_name: Karl Emanuel
  full_name: Busch, Karl Emanuel
  last_name: Busch
- first_name: Robin Joseph
  full_name: Murphy, Robin Joseph
  last_name: Murphy
- first_name: Zoltan
  full_name: Soltesz, Zoltan
  last_name: Soltesz
- first_name: Patrick
  full_name: Laurent, Patrick
  last_name: Laurent
- first_name: Mario
  full_name: de Bono, Mario
  id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
  last_name: de Bono
  orcid: 0000-0001-8347-0443
citation:
  ama: Bretscher AJ, Kodama-Namba E, Busch KE, et al. Temperature, oxygen, and salt-sensing
    neurons in C. elegans are carbon dioxide sensors that control avoidance behavior.
    <i>Neuron</i>. 2011;69(6):1099-1113. doi:<a href="https://doi.org/10.1016/j.neuron.2011.02.023">10.1016/j.neuron.2011.02.023</a>
  apa: Bretscher, A. J., Kodama-Namba, E., Busch, K. E., Murphy, R. J., Soltesz, Z.,
    Laurent, P., &#38; de Bono, M. (2011). Temperature, oxygen, and salt-sensing neurons
    in C. elegans are carbon dioxide sensors that control avoidance behavior. <i>Neuron</i>.
    Elsevier BV. <a href="https://doi.org/10.1016/j.neuron.2011.02.023">https://doi.org/10.1016/j.neuron.2011.02.023</a>
  chicago: Bretscher, Andrew Jonathan, Eiji Kodama-Namba, Karl Emanuel Busch, Robin Joseph
    Murphy, Zoltan Soltesz, Patrick Laurent, and Mario de Bono. “Temperature, Oxygen,
    and Salt-Sensing Neurons in C. Elegans Are Carbon Dioxide Sensors That Control
    Avoidance Behavior.” <i>Neuron</i>. Elsevier BV, 2011. <a href="https://doi.org/10.1016/j.neuron.2011.02.023">https://doi.org/10.1016/j.neuron.2011.02.023</a>.
  ieee: A. J. Bretscher <i>et al.</i>, “Temperature, oxygen, and salt-sensing neurons
    in C. elegans are carbon dioxide sensors that control avoidance behavior,” <i>Neuron</i>,
    vol. 69, no. 6. Elsevier BV, pp. 1099–1113, 2011.
  ista: Bretscher AJ, Kodama-Namba E, Busch KE, Murphy RJ, Soltesz Z, Laurent P, de
    Bono M. 2011. Temperature, oxygen, and salt-sensing neurons in C. elegans are
    carbon dioxide sensors that control avoidance behavior. Neuron. 69(6), 1099–1113.
  mla: Bretscher, Andrew Jonathan, et al. “Temperature, Oxygen, and Salt-Sensing Neurons
    in C. Elegans Are Carbon Dioxide Sensors That Control Avoidance Behavior.” <i>Neuron</i>,
    vol. 69, no. 6, Elsevier BV, 2011, pp. 1099–113, doi:<a href="https://doi.org/10.1016/j.neuron.2011.02.023">10.1016/j.neuron.2011.02.023</a>.
  short: A.J. Bretscher, E. Kodama-Namba, K.E. Busch, R.J. Murphy, Z. Soltesz, P.
    Laurent, M. de Bono, Neuron 69 (2011) 1099–1113.
date_created: 2019-03-20T15:01:41Z
date_published: 2011-03-24T00:00:00Z
date_updated: 2021-01-12T08:06:18Z
day: '24'
ddc:
- '570'
doi: 10.1016/j.neuron.2011.02.023
extern: '1'
external_id:
  pmid:
  - '21435556'
file:
- access_level: open_access
  checksum: 547cffd123f4c508ae927c9244b8f92a
  content_type: application/pdf
  creator: kschuh
  date_created: 2019-03-20T15:06:32Z
  date_updated: 2020-07-14T12:47:20Z
  file_id: '6139'
  file_name: 2011_Cell_Bretscher.pdf
  file_size: 2448332
  relation: main_file
file_date_updated: 2020-07-14T12:47:20Z
has_accepted_license: '1'
intvolume: '        69'
issue: '6'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 1099-1113
pmid: 1
publication: Neuron
publication_identifier:
  issn:
  - 0896-6273
publication_status: published
publisher: Elsevier BV
quality_controlled: '1'
status: public
title: Temperature, oxygen, and salt-sensing neurons in C. elegans are carbon dioxide
  sensors that control avoidance behavior
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 69
year: '2011'
...
---
_id: '6140'
abstract:
- lang: eng
  text: 'Genome sequence comparisons have highlighted many novel gene families that
    are conserved across animal phyla but whose biological function is unknown. Here,
    we functionally characterize a member of one such family, the macoilins. Macoilins
    are characterized by several highly conserved predicted transmembrane domains
    towards the N-terminus and by coiled-coil regions C-terminally. They are found
    throughout Eumetazoa but not in other organisms. Mutants for the single Caenorhabditis
    elegans macoilin, maco-1, exhibit a constellation of behavioral phenotypes, including
    defects in aggregation, O2 responses, and swimming. MACO-1 protein is expressed
    broadly and specifically in the nervous system and localizes to the rough endoplasmic
    reticulum; it is excluded from dendrites and axons. Apart from subtle synapse
    defects, nervous system development appears wild-type in maco-1 mutants. However,
    maco-1 animals are resistant to the cholinesterase inhibitor aldicarb and sensitive
    to levamisole, suggesting pre-synaptic defects. Using in vivo imaging, we show
    that macoilin is required to evoke Ca2+ transients, at least in some neurons:
    in maco-1 mutants the O2-sensing neuron PQR is unable to generate a Ca2+ response
    to a rise in O2. By genetically disrupting neurotransmission, we show that pre-synaptic
    input is not necessary for PQR to respond to O2, indicating that the response
    is mediated by cell-intrinsic sensory transduction and amplification. Disrupting
    the sodium leak channels NCA-1/NCA-2, or the N-,P/Q,R-type voltage-gated Ca2+
    channels, also fails to disrupt Ca2+ responses in the PQR cell body to O2 stimuli.
    By contrast, mutations in egl-19, which encodes the only Caenorhabditis elegans
    L-type voltage-gated Ca2+ channel α1 subunit, recapitulate the Ca2+ response defect
    we see in maco-1 mutants, although we do not see defects in localization of EGL-19.
    Together, our data suggest that macoilin acts in the ER to regulate assembly or
    traffic of ion channels or ion channel regulators.'
article_number: e1001341
author:
- first_name: Fausto
  full_name: Arellano-Carbajal, Fausto
  last_name: Arellano-Carbajal
- first_name: Luis
  full_name: Briseño-Roa, Luis
  last_name: Briseño-Roa
- first_name: Africa
  full_name: Couto, Africa
  last_name: Couto
- first_name: Benny H. H.
  full_name: Cheung, Benny H. H.
  last_name: Cheung
- first_name: Michel
  full_name: Labouesse, Michel
  last_name: Labouesse
- first_name: Mario
  full_name: de Bono, Mario
  id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
  last_name: de Bono
  orcid: 0000-0001-8347-0443
citation:
  ama: Arellano-Carbajal F, Briseño-Roa L, Couto A, Cheung BHH, Labouesse M, de Bono
    M. Macoilin, a conserved nervous system–specific ER membrane protein that regulates
    neuronal excitability. <i>PLoS Genetics</i>. 2011;7(3). doi:<a href="https://doi.org/10.1371/journal.pgen.1001341">10.1371/journal.pgen.1001341</a>
  apa: Arellano-Carbajal, F., Briseño-Roa, L., Couto, A., Cheung, B. H. H., Labouesse,
    M., &#38; de Bono, M. (2011). Macoilin, a conserved nervous system–specific ER
    membrane protein that regulates neuronal excitability. <i>PLoS Genetics</i>. Public
    Library of Science. <a href="https://doi.org/10.1371/journal.pgen.1001341">https://doi.org/10.1371/journal.pgen.1001341</a>
  chicago: Arellano-Carbajal, Fausto, Luis Briseño-Roa, Africa Couto, Benny H. H.
    Cheung, Michel Labouesse, and Mario de Bono. “Macoilin, a Conserved Nervous System–Specific
    ER Membrane Protein That Regulates Neuronal Excitability.” <i>PLoS Genetics</i>.
    Public Library of Science, 2011. <a href="https://doi.org/10.1371/journal.pgen.1001341">https://doi.org/10.1371/journal.pgen.1001341</a>.
  ieee: F. Arellano-Carbajal, L. Briseño-Roa, A. Couto, B. H. H. Cheung, M. Labouesse,
    and M. de Bono, “Macoilin, a conserved nervous system–specific ER membrane protein
    that regulates neuronal excitability,” <i>PLoS Genetics</i>, vol. 7, no. 3. Public
    Library of Science, 2011.
  ista: Arellano-Carbajal F, Briseño-Roa L, Couto A, Cheung BHH, Labouesse M, de Bono
    M. 2011. Macoilin, a conserved nervous system–specific ER membrane protein that
    regulates neuronal excitability. PLoS Genetics. 7(3), e1001341.
  mla: Arellano-Carbajal, Fausto, et al. “Macoilin, a Conserved Nervous System–Specific
    ER Membrane Protein That Regulates Neuronal Excitability.” <i>PLoS Genetics</i>,
    vol. 7, no. 3, e1001341, Public Library of Science, 2011, doi:<a href="https://doi.org/10.1371/journal.pgen.1001341">10.1371/journal.pgen.1001341</a>.
  short: F. Arellano-Carbajal, L. Briseño-Roa, A. Couto, B.H.H. Cheung, M. Labouesse,
    M. de Bono, PLoS Genetics 7 (2011).
date_created: 2019-03-20T15:08:23Z
date_published: 2011-03-17T00:00:00Z
date_updated: 2021-01-12T08:06:19Z
day: '17'
ddc:
- '570'
doi: 10.1371/journal.pgen.1001341
extern: '1'
external_id:
  pmid:
  - '21437263'
file:
- access_level: open_access
  checksum: c609b2ce616d7dafbb617ec5d022f1ea
  content_type: application/pdf
  creator: kschuh
  date_created: 2019-03-20T15:18:11Z
  date_updated: 2020-07-14T12:47:20Z
  file_id: '6141'
  file_name: 2011_PLOS_Arellano-Carbajal.PDF
  file_size: 5625063
  relation: main_file
file_date_updated: 2020-07-14T12:47:20Z
has_accepted_license: '1'
intvolume: '         7'
issue: '3'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: PLoS Genetics
publication_identifier:
  issn:
  - 1553-7404
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
status: public
title: Macoilin, a conserved nervous system–specific ER membrane protein that regulates
  neuronal excitability
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2011'
...
---
_id: '6298'
abstract:
- lang: eng
  text: Tumor necrosis factor-stimulated gene-6 (TSG-6) is a hyalu-ronan (HA)-binding
    protein that plays important roles ininflammation and ovulation. TSG-6-mediated
    cross-linking ofHA has been proposed as a functional mechanism (e.g.for regu-lating
    leukocyte adhesion), but direct evidence for cross-linkingis lacking, and we know
    very little about its impact on HA ultra-structure. Here we used films of polymeric
    and oligomeric HAchains, end-grafted to a solid support, and a combination ofsurface-sensitive
    biophysical techniques to quantify the bindingof TSG-6 into HA films and to correlate
    binding to morpholog-ical changes. We find that full-length TSG-6 binds with pro-nounced
    positive cooperativity and demonstrate that it cancross-link HA at physiologically
    relevant concentrations. Ourdata indicate that cooperative binding of full-length
    TSG-6arises from HA-induced protein oligomerization and that theTSG-6 oligomers
    act as cross-linkers. In contrast, the HA-bind-ing domain of TSG-6 (the Link module)
    alone binds withoutpositive cooperativity and weaker than the full-length protein.Both
    the Link module and full-length TSG-6 condensed andrigidified HA films, and the
    degree of condensation scaled withthe affinity between the TSG-6 constructs and
    HA. We proposethat condensation is the result of protein-mediated HA cross-linking.
    Our findings firmly establish that TSG-6 is a potent HAcross-linking agent and
    might hence have important implica-tions for the mechanistic understanding of
    the biological func-tion of TSG-6 (e.g.in inflammation).
author:
- first_name: Natalia
  full_name: Baranova, Natalia
  id: 38661662-F248-11E8-B48F-1D18A9856A87
  last_name: Baranova
  orcid: 0000-0002-3086-9124
- first_name: Erik
  full_name: Nilebäck, Erik
  last_name: Nilebäck
- first_name: F. Michael
  full_name: Haller, F. Michael
  last_name: Haller
- first_name: David C.
  full_name: Briggs, David C.
  last_name: Briggs
- first_name: Sofia
  full_name: Svedhem, Sofia
  last_name: Svedhem
- first_name: Anthony J.
  full_name: Day, Anthony J.
  last_name: Day
- first_name: Ralf P.
  full_name: Richter, Ralf P.
  last_name: Richter
citation:
  ama: Baranova NS, Nilebäck E, Haller FM, et al. The inflammation-associated protein
    TSG-6 cross-links hyaluronan via hyaluronan-induced TSG-6 oligomers. <i>Journal
    of Biological Chemistry</i>. 2011;286(29):25675-25686. doi:<a href="https://doi.org/10.1074/jbc.m111.247395">10.1074/jbc.m111.247395</a>
  apa: Baranova, N. S., Nilebäck, E., Haller, F. M., Briggs, D. C., Svedhem, S., Day,
    A. J., &#38; Richter, R. P. (2011). The inflammation-associated protein TSG-6
    cross-links hyaluronan via hyaluronan-induced TSG-6 oligomers. <i>Journal of Biological
    Chemistry</i>. American Society for Biochemistry &#38; Molecular Biology. <a href="https://doi.org/10.1074/jbc.m111.247395">https://doi.org/10.1074/jbc.m111.247395</a>
  chicago: Baranova, Natalia S., Erik Nilebäck, F. Michael Haller, David C. Briggs,
    Sofia Svedhem, Anthony J. Day, and Ralf P. Richter. “The Inflammation-Associated
    Protein TSG-6 Cross-Links Hyaluronan via Hyaluronan-Induced TSG-6 Oligomers.”
    <i>Journal of Biological Chemistry</i>. American Society for Biochemistry &#38;
    Molecular Biology, 2011. <a href="https://doi.org/10.1074/jbc.m111.247395">https://doi.org/10.1074/jbc.m111.247395</a>.
  ieee: N. S. Baranova <i>et al.</i>, “The inflammation-associated protein TSG-6 cross-links
    hyaluronan via hyaluronan-induced TSG-6 oligomers,” <i>Journal of Biological Chemistry</i>,
    vol. 286, no. 29. American Society for Biochemistry &#38; Molecular Biology, pp.
    25675–25686, 2011.
  ista: Baranova NS, Nilebäck E, Haller FM, Briggs DC, Svedhem S, Day AJ, Richter
    RP. 2011. The inflammation-associated protein TSG-6 cross-links hyaluronan via
    hyaluronan-induced TSG-6 oligomers. Journal of Biological Chemistry. 286(29),
    25675–25686.
  mla: Baranova, Natalia S., et al. “The Inflammation-Associated Protein TSG-6 Cross-Links
    Hyaluronan via Hyaluronan-Induced TSG-6 Oligomers.” <i>Journal of Biological Chemistry</i>,
    vol. 286, no. 29, American Society for Biochemistry &#38; Molecular Biology, 2011,
    pp. 25675–86, doi:<a href="https://doi.org/10.1074/jbc.m111.247395">10.1074/jbc.m111.247395</a>.
  short: N.S. Baranova, E. Nilebäck, F.M. Haller, D.C. Briggs, S. Svedhem, A.J. Day,
    R.P. Richter, Journal of Biological Chemistry 286 (2011) 25675–25686.
date_created: 2019-04-11T20:57:43Z
date_published: 2011-07-22T00:00:00Z
date_updated: 2021-01-12T08:06:58Z
day: '22'
doi: 10.1074/jbc.m111.247395
extern: '1'
intvolume: '       286'
issue: '29'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.jbc.org/content/286/29/25675.full.pdf
month: '07'
oa: 1
oa_version: Published Version
page: 25675-25686
publication: Journal of Biological Chemistry
publication_identifier:
  issn:
  - 0021-9258
  - 1083-351X
publication_status: published
publisher: American Society for Biochemistry & Molecular Biology
quality_controlled: '1'
status: public
title: The inflammation-associated protein TSG-6 cross-links hyaluronan via hyaluronan-induced
  TSG-6 oligomers
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 286
year: '2011'
...
---
_id: '6496'
abstract:
- lang: eng
  text: We report the switching behavior of the full bacterial flagellum system that
    includes the filament and the motor in wild-type Escherichia coli cells. In sorting
    the motor behavior by the clockwise bias, we find that the distributions of the
    clockwise (CW) and counterclockwise (CCW) intervals are either exponential or
    nonexponential with long tails. At low bias, CW intervals are exponentially distributed
    and CCW intervals exhibit long tails. At intermediate CW bias (0.5) both CW and
    CCW intervals are mainly exponentially distributed. A simple model suggests that
    these two distinct switching behaviors are governed by the presence of signaling
    noise within the chemotaxis network. Low noise yields exponentially distributed
    intervals, whereas large noise yields nonexponential behavior with long tails.
    These drastically different motor statistics may play a role in optimizing bacterial
    behavior for a wide range of environmental conditions.
article_processing_charge: No
author:
- first_name: Heungwon
  full_name: Park, Heungwon
  last_name: Park
- first_name: Panos
  full_name: Oikonomou, Panos
  last_name: Oikonomou
- first_name: Calin C
  full_name: Guet, Calin C
  id: 47F8433E-F248-11E8-B48F-1D18A9856A87
  last_name: Guet
  orcid: 0000-0001-6220-2052
- first_name: Philippe
  full_name: Cluzel, Philippe
  last_name: Cluzel
citation:
  ama: Park H, Oikonomou P, Guet CC, Cluzel P. Noise underlies switching behavior
    of the bacterial flagellum. <i>Biophysical Journal</i>. 2011;101(10):2336-2340.
    doi:<a href="https://doi.org/10.1016/j.bpj.2011.09.040">10.1016/j.bpj.2011.09.040</a>
  apa: Park, H., Oikonomou, P., Guet, C. C., &#38; Cluzel, P. (2011). Noise underlies
    switching behavior of the bacterial flagellum. <i>Biophysical Journal</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.bpj.2011.09.040">https://doi.org/10.1016/j.bpj.2011.09.040</a>
  chicago: Park, Heungwon, Panos Oikonomou, Calin C Guet, and Philippe Cluzel. “Noise
    Underlies Switching Behavior of the Bacterial Flagellum.” <i>Biophysical Journal</i>.
    Elsevier, 2011. <a href="https://doi.org/10.1016/j.bpj.2011.09.040">https://doi.org/10.1016/j.bpj.2011.09.040</a>.
  ieee: H. Park, P. Oikonomou, C. C. Guet, and P. Cluzel, “Noise underlies switching
    behavior of the bacterial flagellum,” <i>Biophysical Journal</i>, vol. 101, no.
    10. Elsevier, pp. 2336–2340, 2011.
  ista: Park H, Oikonomou P, Guet CC, Cluzel P. 2011. Noise underlies switching behavior
    of the bacterial flagellum. Biophysical Journal. 101(10), 2336–2340.
  mla: Park, Heungwon, et al. “Noise Underlies Switching Behavior of the Bacterial
    Flagellum.” <i>Biophysical Journal</i>, vol. 101, no. 10, Elsevier, 2011, pp.
    2336–40, doi:<a href="https://doi.org/10.1016/j.bpj.2011.09.040">10.1016/j.bpj.2011.09.040</a>.
  short: H. Park, P. Oikonomou, C.C. Guet, P. Cluzel, Biophysical Journal 101 (2011)
    2336–2340.
date_created: 2019-05-28T11:54:29Z
date_published: 2011-11-16T00:00:00Z
date_updated: 2025-09-30T09:26:28Z
day: '16'
department:
- _id: CaGu
doi: 10.1016/j.bpj.2011.09.040
external_id:
  isi:
  - '000297143500008'
  pmid:
  - '22098731'
intvolume: '       101'
isi: 1
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3218319/
month: '11'
oa: 1
oa_version: Published Version
page: 2336-2340
pmid: 1
publication: Biophysical Journal
publication_identifier:
  issn:
  - 0006-3495
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Noise underlies switching behavior of the bacterial flagellum
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 101
year: '2011'
...
---
_id: '6749'
abstract:
- lang: eng
  text: This article refers to algorithms based on finite difference schemes for computing
    mean and affine curvature evolutions of digital images, introduced by Alvarez
    and Morel [L. Alvarez, J.M. Morel, “Formalization and computational aspects of
    image analysis”, Acta Numerica, pp. 159, 1994]. We discuss consistency, stability
    and convergence. Our analysis focuses on some possible choices of the parameters,
    choices that generate multiple variants in the implementations. Meaningful visual
    examples on how the algorithms actually work are provided.
author:
- first_name: Marco
  full_name: Mondelli, Marco
  id: 27EB676C-8706-11E9-9510-7717E6697425
  last_name: Mondelli
  orcid: 0000-0002-3242-7020
- first_name: Adina
  full_name: Ciomaga, Adina
  last_name: Ciomaga
citation:
  ama: Mondelli M, Ciomaga A. Finite difference schemes for MCM and AMSS. <i>Image
    Processing On Line</i>. 2011;1:127-177. doi:<a href="https://doi.org/10.5201/ipol.2011.cm_fds">10.5201/ipol.2011.cm_fds</a>
  apa: Mondelli, M., &#38; Ciomaga, A. (2011). Finite difference schemes for MCM and
    AMSS. <i>Image Processing On Line</i>. IPOL Image Processing On Line. <a href="https://doi.org/10.5201/ipol.2011.cm_fds">https://doi.org/10.5201/ipol.2011.cm_fds</a>
  chicago: Mondelli, Marco, and Adina Ciomaga. “Finite Difference Schemes for MCM
    and AMSS.” <i>Image Processing On Line</i>. IPOL Image Processing On Line, 2011.
    <a href="https://doi.org/10.5201/ipol.2011.cm_fds">https://doi.org/10.5201/ipol.2011.cm_fds</a>.
  ieee: M. Mondelli and A. Ciomaga, “Finite difference schemes for MCM and AMSS,”
    <i>Image Processing On Line</i>, vol. 1. IPOL Image Processing On Line, pp. 127–177,
    2011.
  ista: Mondelli M, Ciomaga A. 2011. Finite difference schemes for MCM and AMSS. Image
    Processing On Line. 1, 127–177.
  mla: Mondelli, Marco, and Adina Ciomaga. “Finite Difference Schemes for MCM and
    AMSS.” <i>Image Processing On Line</i>, vol. 1, IPOL Image Processing On Line,
    2011, pp. 127–77, doi:<a href="https://doi.org/10.5201/ipol.2011.cm_fds">10.5201/ipol.2011.cm_fds</a>.
  short: M. Mondelli, A. Ciomaga, Image Processing On Line 1 (2011) 127–177.
date_created: 2019-07-31T09:44:24Z
date_published: 2011-09-13T00:00:00Z
date_updated: 2021-01-12T08:08:50Z
day: '13'
ddc:
- '000'
doi: 10.5201/ipol.2011.cm_fds
extern: '1'
file:
- access_level: open_access
  checksum: 910710811224c633202791e0c217d05d
  content_type: application/pdf
  creator: dernst
  date_created: 2019-08-01T06:34:21Z
  date_updated: 2020-07-14T12:47:39Z
  file_id: '6751'
  file_name: 2011_IPOL_Mondelli.pdf
  file_size: 2793903
  relation: main_file
file_date_updated: 2020-07-14T12:47:39Z
has_accepted_license: '1'
intvolume: '         1'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-sa/4.0/
month: '09'
oa: 1
oa_version: Published Version
page: 127-177
publication: Image Processing On Line
publication_identifier:
  issn:
  - 2105-1232
publication_status: published
publisher: IPOL Image Processing On Line
quality_controlled: '1'
status: public
title: Finite difference schemes for MCM and AMSS
tmp:
  image: /images/cc_by_nc_sa.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
    BY-NC-SA 4.0)
  short: CC BY-NC-SA (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1
year: '2011'
...
---
_id: '6767'
abstract:
- lang: eng
  text: "In the present paper we give a thorough analysis of two finite difference
    schemes for the Mean Curvature Motion and its affine variant, the Affine Morphological
    Scale Space, schemes introduced in the Image Processing framework. This analysis
    brings in a series of parameters that allow us to compute an accurate discrete
    evolution of curvature motions.\r\nThe choice of these parameters is based on
    intrinsic geometric properties of the evolution equations for linear, radial and
    elliptical functions. In the last part we present several examples, underlining
    the main advantages of the algorithms (the removal of pixelization effects and
    JPEG artifacts) as well as their major drawbacks (absence of contrast invariance
    and grid dependence). A detailed explanatory report, the ANSI C implementations
    and an on-line demo can be found at http://www.ipol.im/."
author:
- first_name: Marco
  full_name: Mondelli, Marco
  id: 27EB676C-8706-11E9-9510-7717E6697425
  last_name: Mondelli
  orcid: 0000-0002-3242-7020
- first_name: Adina
  full_name: Ciomaga, Adina
  last_name: Ciomaga
citation:
  ama: 'Mondelli M, Ciomaga A. On finite difference schemes for curvature motions.
    In: <i>Proceedings of the International Student Conference on Pure and Applied
    Mathematics</i>. Editura Universitãtii „Alexandru Ioan Cuza” Iasi; 2011:137-156.
    doi:<a href="https://doi.org/10.13140/2.1.1862.4646">10.13140/2.1.1862.4646</a>'
  apa: 'Mondelli, M., &#38; Ciomaga, A. (2011). On finite difference schemes for curvature
    motions. In <i>Proceedings of the International Student Conference on Pure and
    Applied Mathematics</i> (pp. 137–156). Iasi, Romania: Editura Universitãtii „Alexandru
    Ioan Cuza” Iasi. <a href="https://doi.org/10.13140/2.1.1862.4646">https://doi.org/10.13140/2.1.1862.4646</a>'
  chicago: Mondelli, Marco, and Adina Ciomaga. “On Finite Difference Schemes for Curvature
    Motions.” In <i>Proceedings of the International Student Conference on Pure and
    Applied Mathematics</i>, 137–56. Editura Universitãtii „Alexandru Ioan Cuza” Iasi,
    2011. <a href="https://doi.org/10.13140/2.1.1862.4646">https://doi.org/10.13140/2.1.1862.4646</a>.
  ieee: M. Mondelli and A. Ciomaga, “On finite difference schemes for curvature motions,”
    in <i>Proceedings of the International Student Conference on Pure and Applied
    Mathematics</i>, Iasi, Romania, 2011, pp. 137–156.
  ista: 'Mondelli M, Ciomaga A. 2011. On finite difference schemes for curvature motions.
    Proceedings of the International Student Conference on Pure and Applied Mathematics.
    ISCOPAM: International Student Conference on Pure and Applied Mathematics, 137–156.'
  mla: Mondelli, Marco, and Adina Ciomaga. “On Finite Difference Schemes for Curvature
    Motions.” <i>Proceedings of the International Student Conference on Pure and Applied
    Mathematics</i>, Editura Universitãtii „Alexandru Ioan Cuza” Iasi, 2011, pp. 137–56,
    doi:<a href="https://doi.org/10.13140/2.1.1862.4646">10.13140/2.1.1862.4646</a>.
  short: M. Mondelli, A. Ciomaga, in:, Proceedings of the International Student Conference
    on Pure and Applied Mathematics, Editura Universitãtii „Alexandru Ioan Cuza” Iasi,
    2011, pp. 137–156.
conference:
  end_date: 2010-07-16
  location: Iasi, Romania
  name: 'ISCOPAM: International Student Conference on Pure and Applied Mathematics'
  start_date: 2010-07-12
date_created: 2019-08-05T12:20:58Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2021-01-12T08:08:56Z
day: '01'
doi: 10.13140/2.1.1862.4646
extern: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: 137-156
publication: Proceedings of the International Student Conference on Pure and Applied
  Mathematics
publication_identifier:
  isbn:
  - 978-973-703-602-5
publication_status: published
publisher: Editura Universitãtii „Alexandru Ioan Cuza” Iasi
quality_controlled: '1'
status: public
title: On finite difference schemes for curvature motions
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '7076'
abstract:
- lang: eng
  text: Iron is a ubiquitous impurity in metamict (radiation-damaged and partially
    amorphized) materials such as titanite (CaSiTiO5). Using 57Fe Mössbauer spectroscopy
    we find that iron in metamict titanite is partitioned between amorphous and crystalline
    regions based on valence. Trivalent iron exists in the crystalline titanite matrix
    whereas divalent iron exists almost exclusively in radiation-amorphized regions.
    We find that the relative abundances of the oxidation states correlate with the
    volume fraction of amorphous and crystalline regions. Our data also show that
    oxidation of iron proceeds along with the recrystallization of the amorphized
    regions. Recrystallization is confirmed to occur over the range 700 °C < T < 925 °C,
    and no further structural changes are observed at higher temperatures. It is surprising
    that our Mössbauer measurements show divalent iron to be surrounded by titanite
    with a high degree of short-range structural order in the amorphized regions.
    This observation is fundamentally different from other metamict materials such
    as zircon (ZrSiO4), where amorphized regions show no short-range order.
article_number: '105402'
article_processing_charge: No
article_type: original
author:
- first_name: E K H
  full_name: Salje, E K H
  last_name: Salje
- first_name: D J
  full_name: Safarik, D J
  last_name: Safarik
- first_name: R D
  full_name: Taylor, R D
  last_name: Taylor
- first_name: M P
  full_name: Pasternak, M P
  last_name: Pasternak
- first_name: Kimberly A
  full_name: Modic, Kimberly A
  id: 13C26AC0-EB69-11E9-87C6-5F3BE6697425
  last_name: Modic
  orcid: 0000-0001-9760-3147
- first_name: L A
  full_name: Groat, L A
  last_name: Groat
- first_name: J C
  full_name: Lashley, J C
  last_name: Lashley
citation:
  ama: 'Salje EKH, Safarik DJ, Taylor RD, et al. Determination of iron sites and the
    amount of amorphization in radiation-damaged titanite (CaSiTiO5). <i>Journal of
    Physics: Condensed Matter</i>. 2011;23(10). doi:<a href="https://doi.org/10.1088/0953-8984/23/10/105402">10.1088/0953-8984/23/10/105402</a>'
  apa: 'Salje, E. K. H., Safarik, D. J., Taylor, R. D., Pasternak, M. P., Modic, K.
    A., Groat, L. A., &#38; Lashley, J. C. (2011). Determination of iron sites and
    the amount of amorphization in radiation-damaged titanite (CaSiTiO5). <i>Journal
    of Physics: Condensed Matter</i>. IOP Publishing. <a href="https://doi.org/10.1088/0953-8984/23/10/105402">https://doi.org/10.1088/0953-8984/23/10/105402</a>'
  chicago: 'Salje, E K H, D J Safarik, R D Taylor, M P Pasternak, Kimberly A Modic,
    L A Groat, and J C Lashley. “Determination of Iron Sites and the Amount of Amorphization
    in Radiation-Damaged Titanite (CaSiTiO5).” <i>Journal of Physics: Condensed Matter</i>.
    IOP Publishing, 2011. <a href="https://doi.org/10.1088/0953-8984/23/10/105402">https://doi.org/10.1088/0953-8984/23/10/105402</a>.'
  ieee: 'E. K. H. Salje <i>et al.</i>, “Determination of iron sites and the amount
    of amorphization in radiation-damaged titanite (CaSiTiO5),” <i>Journal of Physics:
    Condensed Matter</i>, vol. 23, no. 10. IOP Publishing, 2011.'
  ista: 'Salje EKH, Safarik DJ, Taylor RD, Pasternak MP, Modic KA, Groat LA, Lashley
    JC. 2011. Determination of iron sites and the amount of amorphization in radiation-damaged
    titanite (CaSiTiO5). Journal of Physics: Condensed Matter. 23(10), 105402.'
  mla: 'Salje, E. K. H., et al. “Determination of Iron Sites and the Amount of Amorphization
    in Radiation-Damaged Titanite (CaSiTiO5).” <i>Journal of Physics: Condensed Matter</i>,
    vol. 23, no. 10, 105402, IOP Publishing, 2011, doi:<a href="https://doi.org/10.1088/0953-8984/23/10/105402">10.1088/0953-8984/23/10/105402</a>.'
  short: 'E.K.H. Salje, D.J. Safarik, R.D. Taylor, M.P. Pasternak, K.A. Modic, L.A.
    Groat, J.C. Lashley, Journal of Physics: Condensed Matter 23 (2011).'
date_created: 2019-11-19T13:39:30Z
date_published: 2011-02-21T00:00:00Z
date_updated: 2021-01-12T08:11:43Z
day: '21'
doi: 10.1088/0953-8984/23/10/105402
extern: '1'
intvolume: '        23'
issue: '10'
language:
- iso: eng
month: '02'
oa_version: None
publication: 'Journal of Physics: Condensed Matter'
publication_identifier:
  issn:
  - 0953-8984
  - 1361-648X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
status: public
title: Determination of iron sites and the amount of amorphization in radiation-damaged
  titanite (CaSiTiO5)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 23
year: '2011'
...
---
_id: '7077'
abstract:
- lang: eng
  text: Pb, Te, Ag and Se, when reacted in a 1:1:x:1 (x = 1.9, 2.0, 2.01) molar ratio,
    form a two phase composite which consists of a phase which crystallizes in the
    fcc cubic PbSe structure and a phase that crystallizes in the Ag2Te structure.
    In this article, we demonstrate that by varying the Ag concentration, we can manipulate
    which variant of the Ag2Te structure stabilizes at room temperature (monoclinic
    α-Ag2Te or cubic β-Ag1.9Te) and can consequently manipulate the electrical and
    thermal transport behavior of the composite and hence the thermoelectric performance.
    Additionally, we show that Cu-doping results in an overall improvement in thermoelectric
    performance. Our results suggest that formation of composites is a viable path
    for achieving a phonon-glass-electron-crystal (PGEC) alloy.
article_processing_charge: No
article_type: original
author:
- first_name: J.
  full_name: Capps, J.
  last_name: Capps
- first_name: B.
  full_name: Ma, B.
  last_name: Ma
- first_name: T.
  full_name: Drye, T.
  last_name: Drye
- first_name: C.
  full_name: Nucklos, C.
  last_name: Nucklos
- first_name: S.
  full_name: Lindsey, S.
  last_name: Lindsey
- first_name: D.
  full_name: Rhodes, D.
  last_name: Rhodes
- first_name: Q.
  full_name: Zhang, Q.
  last_name: Zhang
- first_name: Kimberly A
  full_name: Modic, Kimberly A
  id: 13C26AC0-EB69-11E9-87C6-5F3BE6697425
  last_name: Modic
  orcid: 0000-0001-9760-3147
- first_name: S.
  full_name: Cawthorne, S.
  last_name: Cawthorne
- first_name: F.
  full_name: Drymiotis, F.
  last_name: Drymiotis
citation:
  ama: Capps J, Ma B, Drye T, et al. The effect of Ag concentration on the structural,
    electrical and thermal transport behavior of Pb:Te:Ag:Se mixtures and improvement
    of thermoelectric performance via Cu doping. <i>Journal of Alloys and Compounds</i>.
    2011;509(5):1544-1549. doi:<a href="https://doi.org/10.1016/j.jallcom.2010.10.187">10.1016/j.jallcom.2010.10.187</a>
  apa: Capps, J., Ma, B., Drye, T., Nucklos, C., Lindsey, S., Rhodes, D., … Drymiotis,
    F. (2011). The effect of Ag concentration on the structural, electrical and thermal
    transport behavior of Pb:Te:Ag:Se mixtures and improvement of thermoelectric performance
    via Cu doping. <i>Journal of Alloys and Compounds</i>. Elsevier. <a href="https://doi.org/10.1016/j.jallcom.2010.10.187">https://doi.org/10.1016/j.jallcom.2010.10.187</a>
  chicago: Capps, J., B. Ma, T. Drye, C. Nucklos, S. Lindsey, D. Rhodes, Q. Zhang,
    Kimberly A Modic, S. Cawthorne, and F. Drymiotis. “The Effect of Ag Concentration
    on the Structural, Electrical and Thermal Transport Behavior of Pb:Te:Ag:Se Mixtures
    and Improvement of Thermoelectric Performance via Cu Doping.” <i>Journal of Alloys
    and Compounds</i>. Elsevier, 2011. <a href="https://doi.org/10.1016/j.jallcom.2010.10.187">https://doi.org/10.1016/j.jallcom.2010.10.187</a>.
  ieee: J. Capps <i>et al.</i>, “The effect of Ag concentration on the structural,
    electrical and thermal transport behavior of Pb:Te:Ag:Se mixtures and improvement
    of thermoelectric performance via Cu doping,” <i>Journal of Alloys and Compounds</i>,
    vol. 509, no. 5. Elsevier, pp. 1544–1549, 2011.
  ista: Capps J, Ma B, Drye T, Nucklos C, Lindsey S, Rhodes D, Zhang Q, Modic KA,
    Cawthorne S, Drymiotis F. 2011. The effect of Ag concentration on the structural,
    electrical and thermal transport behavior of Pb:Te:Ag:Se mixtures and improvement
    of thermoelectric performance via Cu doping. Journal of Alloys and Compounds.
    509(5), 1544–1549.
  mla: Capps, J., et al. “The Effect of Ag Concentration on the Structural, Electrical
    and Thermal Transport Behavior of Pb:Te:Ag:Se Mixtures and Improvement of Thermoelectric
    Performance via Cu Doping.” <i>Journal of Alloys and Compounds</i>, vol. 509,
    no. 5, Elsevier, 2011, pp. 1544–49, doi:<a href="https://doi.org/10.1016/j.jallcom.2010.10.187">10.1016/j.jallcom.2010.10.187</a>.
  short: J. Capps, B. Ma, T. Drye, C. Nucklos, S. Lindsey, D. Rhodes, Q. Zhang, K.A.
    Modic, S. Cawthorne, F. Drymiotis, Journal of Alloys and Compounds 509 (2011)
    1544–1549.
date_created: 2019-11-19T13:45:37Z
date_published: 2011-02-03T00:00:00Z
date_updated: 2021-01-12T08:11:44Z
day: '03'
doi: 10.1016/j.jallcom.2010.10.187
extern: '1'
intvolume: '       509'
issue: '5'
language:
- iso: eng
month: '02'
oa_version: None
page: 1544-1549
publication: Journal of Alloys and Compounds
publication_identifier:
  issn:
  - 0925-8388
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: The effect of Ag concentration on the structural, electrical and thermal transport
  behavior of Pb:Te:Ag:Se mixtures and improvement of thermoelectric performance via
  Cu doping
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 509
year: '2011'
...
---
_id: '7313'
abstract:
- lang: eng
  text: 'Li-ion batteries have transformed portable electronics and will play a key
    role in the electrification of transport. However, the highest energy storage
    possible for Li-ion batteries is insufficient for the long-term needs of society,
    for example, extended-range electric vehicles. To go beyond the horizon of Li-ion
    batteries is a formidable challenge; there are few options. Here we consider two:
    Li–air (O2) and Li–S. The energy that can be stored in Li–air (based on aqueous
    or non-aqueous electrolytes) and Li–S cells is compared with Li-ion; the operation
    of the cells is discussed, as are the significant hurdles that will have to be
    overcome if such batteries are to succeed. Fundamental scientific advances in
    understanding the reactions occurring in the cells as well as new materials are
    key to overcoming these obstacles. The potential benefits of Li–air and Li–S justify
    the continued research effort that will be needed.'
article_processing_charge: No
article_type: original
author:
- first_name: Peter G.
  full_name: Bruce, Peter G.
  last_name: Bruce
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
- first_name: Laurence J.
  full_name: Hardwick, Laurence J.
  last_name: Hardwick
- first_name: Jean-Marie
  full_name: Tarascon, Jean-Marie
  last_name: Tarascon
citation:
  ama: Bruce PG, Freunberger SA, Hardwick LJ, Tarascon J-M. Li–O2 and Li–S batteries
    with high energy storage. <i>Nature Materials</i>. 2011;11(1):19-29. doi:<a href="https://doi.org/10.1038/nmat3191">10.1038/nmat3191</a>
  apa: Bruce, P. G., Freunberger, S. A., Hardwick, L. J., &#38; Tarascon, J.-M. (2011).
    Li–O2 and Li–S batteries with high energy storage. <i>Nature Materials</i>. Springer
    Nature. <a href="https://doi.org/10.1038/nmat3191">https://doi.org/10.1038/nmat3191</a>
  chicago: Bruce, Peter G., Stefan Alexander Freunberger, Laurence J. Hardwick, and
    Jean-Marie Tarascon. “Li–O2 and Li–S Batteries with High Energy Storage.” <i>Nature
    Materials</i>. Springer Nature, 2011. <a href="https://doi.org/10.1038/nmat3191">https://doi.org/10.1038/nmat3191</a>.
  ieee: P. G. Bruce, S. A. Freunberger, L. J. Hardwick, and J.-M. Tarascon, “Li–O2
    and Li–S batteries with high energy storage,” <i>Nature Materials</i>, vol. 11,
    no. 1. Springer Nature, pp. 19–29, 2011.
  ista: Bruce PG, Freunberger SA, Hardwick LJ, Tarascon J-M. 2011. Li–O2 and Li–S
    batteries with high energy storage. Nature Materials. 11(1), 19–29.
  mla: Bruce, Peter G., et al. “Li–O2 and Li–S Batteries with High Energy Storage.”
    <i>Nature Materials</i>, vol. 11, no. 1, Springer Nature, 2011, pp. 19–29, doi:<a
    href="https://doi.org/10.1038/nmat3191">10.1038/nmat3191</a>.
  short: P.G. Bruce, S.A. Freunberger, L.J. Hardwick, J.-M. Tarascon, Nature Materials
    11 (2011) 19–29.
date_created: 2020-01-15T12:20:01Z
date_published: 2011-12-15T00:00:00Z
date_updated: 2021-01-12T08:12:59Z
day: '15'
doi: 10.1038/nmat3191
extern: '1'
intvolume: '        11'
issue: '1'
language:
- iso: eng
month: '12'
oa_version: None
page: 19-29
publication: Nature Materials
publication_identifier:
  issn:
  - 1476-1122
  - 1476-4660
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1038/nmat3237
status: public
title: Li–O2 and Li–S batteries with high energy storage
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 11
year: '2011'
...
---
_id: '7314'
abstract:
- lang: eng
  text: 'The electrolyte is one of the greatest challenges facing the development
    of the non‐aqueous Li–O2 battery. Although ether‐based electrolytes do from Li2O2
    on the first discharge, it is shown by various techniques that they also decompose
    and that decomposition increases while Li2O2 decreases on cycling (see picture).
    Thus, these electrolytes are not suitable. '
article_processing_charge: No
article_type: original
author:
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
- first_name: Yuhui
  full_name: Chen, Yuhui
  last_name: Chen
- first_name: Nicholas E.
  full_name: Drewett, Nicholas E.
  last_name: Drewett
- first_name: Laurence J.
  full_name: Hardwick, Laurence J.
  last_name: Hardwick
- first_name: Fanny
  full_name: Bardé, Fanny
  last_name: Bardé
- first_name: Peter G.
  full_name: Bruce, Peter G.
  last_name: Bruce
citation:
  ama: Freunberger SA, Chen Y, Drewett NE, Hardwick LJ, Bardé F, Bruce PG. The Lithium-Oxygen
    battery with ether-based electrolytes. <i>Angewandte Chemie International Edition</i>.
    2011;50(37):8609-8613. doi:<a href="https://doi.org/10.1002/anie.201102357">10.1002/anie.201102357</a>
  apa: Freunberger, S. A., Chen, Y., Drewett, N. E., Hardwick, L. J., Bardé, F., &#38;
    Bruce, P. G. (2011). The Lithium-Oxygen battery with ether-based electrolytes.
    <i>Angewandte Chemie International Edition</i>. Wiley. <a href="https://doi.org/10.1002/anie.201102357">https://doi.org/10.1002/anie.201102357</a>
  chicago: Freunberger, Stefan Alexander, Yuhui Chen, Nicholas E. Drewett, Laurence
    J. Hardwick, Fanny Bardé, and Peter G. Bruce. “The Lithium-Oxygen Battery with
    Ether-Based Electrolytes.” <i>Angewandte Chemie International Edition</i>. Wiley,
    2011. <a href="https://doi.org/10.1002/anie.201102357">https://doi.org/10.1002/anie.201102357</a>.
  ieee: S. A. Freunberger, Y. Chen, N. E. Drewett, L. J. Hardwick, F. Bardé, and P.
    G. Bruce, “The Lithium-Oxygen battery with ether-based electrolytes,” <i>Angewandte
    Chemie International Edition</i>, vol. 50, no. 37. Wiley, pp. 8609–8613, 2011.
  ista: Freunberger SA, Chen Y, Drewett NE, Hardwick LJ, Bardé F, Bruce PG. 2011.
    The Lithium-Oxygen battery with ether-based electrolytes. Angewandte Chemie International
    Edition. 50(37), 8609–8613.
  mla: Freunberger, Stefan Alexander, et al. “The Lithium-Oxygen Battery with Ether-Based
    Electrolytes.” <i>Angewandte Chemie International Edition</i>, vol. 50, no. 37,
    Wiley, 2011, pp. 8609–13, doi:<a href="https://doi.org/10.1002/anie.201102357">10.1002/anie.201102357</a>.
  short: S.A. Freunberger, Y. Chen, N.E. Drewett, L.J. Hardwick, F. Bardé, P.G. Bruce,
    Angewandte Chemie International Edition 50 (2011) 8609–8613.
date_created: 2020-01-15T12:20:19Z
date_published: 2011-09-05T00:00:00Z
date_updated: 2021-01-12T08:12:59Z
day: '05'
doi: 10.1002/anie.201102357
extern: '1'
intvolume: '        50'
issue: '37'
language:
- iso: eng
month: '09'
oa_version: None
page: 8609-8613
publication: Angewandte Chemie International Edition
publication_identifier:
  issn:
  - 1433-7851
publication_status: published
publisher: Wiley
quality_controlled: '1'
status: public
title: The Lithium-Oxygen battery with ether-based electrolytes
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 50
year: '2011'
...
---
_id: '7315'
abstract:
- lang: eng
  text: 'Spectroscopic data (see picture) provide direct evidence that in non‐aqueous
    Li+ electrolyte, O2 is reduced to O2−, which then forms LiO2 on the electrode
    surface which disproportionates to Li2O2. On charging, Li2O2 decomposes directly,
    in a one‐step reaction to evolve O2 and does not pass through LiO2 as an intermediate. '
article_processing_charge: No
article_type: original
author:
- first_name: Zhangquan
  full_name: Peng, Zhangquan
  last_name: Peng
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
- first_name: Laurence J.
  full_name: Hardwick, Laurence J.
  last_name: Hardwick
- first_name: Yuhui
  full_name: Chen, Yuhui
  last_name: Chen
- first_name: Vincent
  full_name: Giordani, Vincent
  last_name: Giordani
- first_name: Fanny
  full_name: Bardé, Fanny
  last_name: Bardé
- first_name: Petr
  full_name: Novák, Petr
  last_name: Novák
- first_name: Duncan
  full_name: Graham, Duncan
  last_name: Graham
- first_name: Jean-Marie
  full_name: Tarascon, Jean-Marie
  last_name: Tarascon
- first_name: Peter G.
  full_name: Bruce, Peter G.
  last_name: Bruce
citation:
  ama: Peng Z, Freunberger SA, Hardwick LJ, et al. Oxygen reactions in a non-aqueous
    Li+ electrolyte. <i>Angewandte Chemie International Edition</i>. 2011;50(28):6351-6355.
    doi:<a href="https://doi.org/10.1002/anie.201100879">10.1002/anie.201100879</a>
  apa: Peng, Z., Freunberger, S. A., Hardwick, L. J., Chen, Y., Giordani, V., Bardé,
    F., … Bruce, P. G. (2011). Oxygen reactions in a non-aqueous Li+ electrolyte.
    <i>Angewandte Chemie International Edition</i>. Wiley. <a href="https://doi.org/10.1002/anie.201100879">https://doi.org/10.1002/anie.201100879</a>
  chicago: Peng, Zhangquan, Stefan Alexander Freunberger, Laurence J. Hardwick, Yuhui
    Chen, Vincent Giordani, Fanny Bardé, Petr Novák, Duncan Graham, Jean-Marie Tarascon,
    and Peter G. Bruce. “Oxygen Reactions in a Non-Aqueous Li+ Electrolyte.” <i>Angewandte
    Chemie International Edition</i>. Wiley, 2011. <a href="https://doi.org/10.1002/anie.201100879">https://doi.org/10.1002/anie.201100879</a>.
  ieee: Z. Peng <i>et al.</i>, “Oxygen reactions in a non-aqueous Li+ electrolyte,”
    <i>Angewandte Chemie International Edition</i>, vol. 50, no. 28. Wiley, pp. 6351–6355,
    2011.
  ista: Peng Z, Freunberger SA, Hardwick LJ, Chen Y, Giordani V, Bardé F, Novák P,
    Graham D, Tarascon J-M, Bruce PG. 2011. Oxygen reactions in a non-aqueous Li+
    electrolyte. Angewandte Chemie International Edition. 50(28), 6351–6355.
  mla: Peng, Zhangquan, et al. “Oxygen Reactions in a Non-Aqueous Li+ Electrolyte.”
    <i>Angewandte Chemie International Edition</i>, vol. 50, no. 28, Wiley, 2011,
    pp. 6351–55, doi:<a href="https://doi.org/10.1002/anie.201100879">10.1002/anie.201100879</a>.
  short: Z. Peng, S.A. Freunberger, L.J. Hardwick, Y. Chen, V. Giordani, F. Bardé,
    P. Novák, D. Graham, J.-M. Tarascon, P.G. Bruce, Angewandte Chemie International
    Edition 50 (2011) 6351–6355.
date_created: 2020-01-15T12:20:31Z
date_published: 2011-07-04T00:00:00Z
date_updated: 2021-01-12T08:12:59Z
day: '04'
doi: 10.1002/anie.201100879
extern: '1'
intvolume: '        50'
issue: '28'
language:
- iso: eng
month: '07'
oa_version: None
page: 6351-6355
publication: Angewandte Chemie International Edition
publication_identifier:
  issn:
  - 1433-7851
publication_status: published
publisher: Wiley
status: public
title: Oxygen reactions in a non-aqueous Li+ electrolyte
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 50
year: '2011'
...
---
_id: '7316'
abstract:
- lang: eng
  text: The nonaqueous rechargeable lithium–O2 battery containing an alkyl carbonate
    electrolyte discharges by formation of C3H6(OCO2Li)2, Li2CO3, HCO2Li, CH3CO2Li,
    CO2, and H2O at the cathode, due to electrolyte decomposition. Charging involves
    oxidation of C3H6(OCO2Li)2, Li2CO3, HCO2Li, CH3CO2Li accompanied by CO2 and H2O
    evolution. Mechanisms are proposed for the reactions on discharge and charge.
    The different pathways for discharge and charge are consistent with the widely
    observed voltage gap in Li–O2 cells. Oxidation of C3H6(OCO2Li)2 involves terminal
    carbonate groups leaving behind the OC3H6O moiety that reacts to form a thick
    gel on the Li anode. Li2CO3, HCO2Li, CH3CO2Li, and C3H6(OCO2Li)2 accumulate in
    the cathode on cycling correlating with capacity fading and cell failure. The
    latter is compounded by continuous consumption of the electrolyte on each discharge.
article_processing_charge: No
article_type: original
author:
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
- first_name: Yuhui
  full_name: Chen, Yuhui
  last_name: Chen
- first_name: Zhangquan
  full_name: Peng, Zhangquan
  last_name: Peng
- first_name: John M.
  full_name: Griffin, John M.
  last_name: Griffin
- first_name: Laurence J.
  full_name: Hardwick, Laurence J.
  last_name: Hardwick
- first_name: Fanny
  full_name: Bardé, Fanny
  last_name: Bardé
- first_name: Petr
  full_name: Novák, Petr
  last_name: Novák
- first_name: Peter G.
  full_name: Bruce, Peter G.
  last_name: Bruce
citation:
  ama: Freunberger SA, Chen Y, Peng Z, et al. Reactions in the rechargeable Lithium–O2
    battery with alkyl carbonate electrolytes. <i>Journal of the American Chemical
    Society</i>. 2011;133(20):8040-8047. doi:<a href="https://doi.org/10.1021/ja2021747">10.1021/ja2021747</a>
  apa: Freunberger, S. A., Chen, Y., Peng, Z., Griffin, J. M., Hardwick, L. J., Bardé,
    F., … Bruce, P. G. (2011). Reactions in the rechargeable Lithium–O2 battery with
    alkyl carbonate electrolytes. <i>Journal of the American Chemical Society</i>.
    ACS. <a href="https://doi.org/10.1021/ja2021747">https://doi.org/10.1021/ja2021747</a>
  chicago: Freunberger, Stefan Alexander, Yuhui Chen, Zhangquan Peng, John M. Griffin,
    Laurence J. Hardwick, Fanny Bardé, Petr Novák, and Peter G. Bruce. “Reactions
    in the Rechargeable Lithium–O2 Battery with Alkyl Carbonate Electrolytes.” <i>Journal
    of the American Chemical Society</i>. ACS, 2011. <a href="https://doi.org/10.1021/ja2021747">https://doi.org/10.1021/ja2021747</a>.
  ieee: S. A. Freunberger <i>et al.</i>, “Reactions in the rechargeable Lithium–O2
    battery with alkyl carbonate electrolytes,” <i>Journal of the American Chemical
    Society</i>, vol. 133, no. 20. ACS, pp. 8040–8047, 2011.
  ista: Freunberger SA, Chen Y, Peng Z, Griffin JM, Hardwick LJ, Bardé F, Novák
    P, Bruce PG. 2011. Reactions in the rechargeable Lithium–O2 battery with alkyl
    carbonate electrolytes. Journal of the American Chemical Society. 133(20), 8040–8047.
  mla: Freunberger, Stefan Alexander, et al. “Reactions in the Rechargeable Lithium–O2
    Battery with Alkyl Carbonate Electrolytes.” <i>Journal of the American Chemical
    Society</i>, vol. 133, no. 20, ACS, 2011, pp. 8040–47, doi:<a href="https://doi.org/10.1021/ja2021747">10.1021/ja2021747</a>.
  short: S.A. Freunberger, Y. Chen, Z. Peng, J.M. Griffin, L.J. Hardwick, F. Bardé,
    P. Novák, P.G. Bruce, Journal of the American Chemical Society 133 (2011) 8040–8047.
date_created: 2020-01-15T12:20:43Z
date_published: 2011-04-27T00:00:00Z
date_updated: 2021-01-12T08:13:00Z
day: '27'
doi: 10.1021/ja2021747
extern: '1'
intvolume: '       133'
issue: '20'
language:
- iso: eng
month: '04'
oa_version: None
page: 8040-8047
publication: Journal of the American Chemical Society
publication_identifier:
  issn:
  - 0002-7863
  - 1520-5126
publication_status: published
publisher: ACS
quality_controlled: '1'
status: public
title: Reactions in the rechargeable Lithium–O2 battery with alkyl carbonate electrolytes
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 133
year: '2011'
...
---
_id: '7317'
abstract:
- lang: eng
  text: Lithium-metal oxides with a high formal Li2O content, such as Li5FeO4 (5Li2O•Fe2O3)
    and a Li2MnO3•LiFeO2 composite ({Li2O•MnO2}•{Li2O•Fe2O3}) have been explored as
    electrocatalysts for primary and rechargeable Li-O2 cells. Activation occurs predominantly
    by Li2O removal, either electrochemically or chemically by acid-treatment. Superior
    electrochemical behavior is obtained if activation occurs by acid-treatment; Li2MnO3•LiFeO2
    catalysts provide 2516 mAh/g (carbon) corresponding to 931 mAh/g (electrocatalyst
    + carbon) during the initial discharge. The reaction is reasonably reversible
    during the early cycles. The approach has implications for designing electrocatalysts
    that participate through electrochemical Li2O extraction/reformation reactions,
    offering exceptionally high capacities.
article_number: A64
article_processing_charge: No
article_type: original
author:
- first_name: L.
  full_name: Trahey, L.
  last_name: Trahey
- first_name: C. S.
  full_name: Johnson, C. S.
  last_name: Johnson
- first_name: J. T.
  full_name: Vaughey, J. T.
  last_name: Vaughey
- first_name: S.-H.
  full_name: Kang, S.-H.
  last_name: Kang
- first_name: L. J.
  full_name: Hardwick, L. J.
  last_name: Hardwick
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
- first_name: P. G.
  full_name: Bruce, P. G.
  last_name: Bruce
- first_name: M. M.
  full_name: Thackeray, M. M.
  last_name: Thackeray
citation:
  ama: Trahey L, Johnson CS, Vaughey JT, et al. Activated Lithium-Metal-Oxides as
    catalytic electrodes for Li–O2 cells. <i>Electrochemical and Solid-State Letters</i>.
    2011;14(5). doi:<a href="https://doi.org/10.1149/1.3555366">10.1149/1.3555366</a>
  apa: Trahey, L., Johnson, C. S., Vaughey, J. T., Kang, S.-H., Hardwick, L. J., Freunberger,
    S. A., … Thackeray, M. M. (2011). Activated Lithium-Metal-Oxides as catalytic
    electrodes for Li–O2 cells. <i>Electrochemical and Solid-State Letters</i>. The
    Electrochemical Society. <a href="https://doi.org/10.1149/1.3555366">https://doi.org/10.1149/1.3555366</a>
  chicago: Trahey, L., C. S. Johnson, J. T. Vaughey, S.-H. Kang, L. J. Hardwick, Stefan
    Alexander Freunberger, P. G. Bruce, and M. M. Thackeray. “Activated Lithium-Metal-Oxides
    as Catalytic Electrodes for Li–O2 Cells.” <i>Electrochemical and Solid-State Letters</i>.
    The Electrochemical Society, 2011. <a href="https://doi.org/10.1149/1.3555366">https://doi.org/10.1149/1.3555366</a>.
  ieee: L. Trahey <i>et al.</i>, “Activated Lithium-Metal-Oxides as catalytic electrodes
    for Li–O2 cells,” <i>Electrochemical and Solid-State Letters</i>, vol. 14, no.
    5. The Electrochemical Society, 2011.
  ista: Trahey L, Johnson CS, Vaughey JT, Kang S-H, Hardwick LJ, Freunberger SA, Bruce
    PG, Thackeray MM. 2011. Activated Lithium-Metal-Oxides as catalytic electrodes
    for Li–O2 cells. Electrochemical and Solid-State Letters. 14(5), A64.
  mla: Trahey, L., et al. “Activated Lithium-Metal-Oxides as Catalytic Electrodes
    for Li–O2 Cells.” <i>Electrochemical and Solid-State Letters</i>, vol. 14, no.
    5, A64, The Electrochemical Society, 2011, doi:<a href="https://doi.org/10.1149/1.3555366">10.1149/1.3555366</a>.
  short: L. Trahey, C.S. Johnson, J.T. Vaughey, S.-H. Kang, L.J. Hardwick, S.A. Freunberger,
    P.G. Bruce, M.M. Thackeray, Electrochemical and Solid-State Letters 14 (2011).
date_created: 2020-01-15T12:20:54Z
date_published: 2011-03-02T00:00:00Z
date_updated: 2021-01-12T08:13:00Z
day: '02'
doi: 10.1149/1.3555366
extern: '1'
intvolume: '        14'
issue: '5'
language:
- iso: eng
month: '03'
oa_version: None
publication: Electrochemical and Solid-State Letters
publication_identifier:
  issn:
  - 1099-0062
publication_status: published
publisher: The Electrochemical Society
quality_controlled: '1'
status: public
title: Activated Lithium-Metal-Oxides as catalytic electrodes for Li–O2 cells
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2011'
...
