---
OA_type: closed access
_id: '22518'
abstract:
- lang: eng
  text: "Interannual variability of precipitation can directly or indirectly affect
    many hydrological, ecological, and biogeochemical processes that, in turn, influence
    climate. Despite the significant importance of the phenomenon, few studies have
    attempted to elucidate spatial patterns of this variability at the global scale.
    This study uses land gauge precipitation records of the Global Historical Climatology
    Network, version 2, as well as reanalysis data to provide an assessment of the
    spatial organization of characteristics of precipitation interannual variability.
    The coefficient of variation, skewness, and short- and long-range dependence of
    the precipitation variability are analyzed. Among the major inferences is that
    the coefficient of variation of annual precipitation shows a significant correlation
    with intra-annual seasonality. Specifically, subyearly precipitation anomalies
    occurring in locations with pronounced seasonality affect the total yearly amount,
    imposing a higher variability in the annual precipitation fluctuations. Furthermore,
    the study illustrates that a positive skewness of the distribution of annual precipitation
    is a robust property worldwide and its magnitude is related to the coefficient
    of variation. Additionally, annual precipitation exhibits very weak small-lag
    autocorrelation. Conversely, the intensity of long-memory–long-range dependence
    is significantly larger than zero, hinting that organized long-term variations
    are an important feature of the interannual variability of precipitation.\r\n\r\n"
article_processing_charge: No
article_type: original
author:
- first_name: Simone
  full_name: Fatichi, Simone
  id: cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6
  last_name: Fatichi
- first_name: V. Yu.
  full_name: Ivanov, V. Yu.
  last_name: Ivanov
- first_name: E.
  full_name: Caporali, E.
  last_name: Caporali
citation:
  ama: 'Fatichi S, Ivanov VY, Caporali E. Investigating interannual variability of
    precipitation at the global scale: Is there a connection with seasonality? <i>Journal
    of Climate</i>. 2012;25(16):5512-5523. doi:<a href="https://doi.org/10.1175/jcli-d-11-00356.1">10.1175/jcli-d-11-00356.1</a>'
  apa: 'Fatichi, S., Ivanov, V. Y., &#38; Caporali, E. (2012). Investigating interannual
    variability of precipitation at the global scale: Is there a connection with seasonality?
    <i>Journal of Climate</i>. American Meteorological Society. <a href="https://doi.org/10.1175/jcli-d-11-00356.1">https://doi.org/10.1175/jcli-d-11-00356.1</a>'
  chicago: 'Fatichi, Simone, V. Yu. Ivanov, and E. Caporali. “Investigating Interannual
    Variability of Precipitation at the Global Scale: Is There a Connection with Seasonality?”
    <i>Journal of Climate</i>. American Meteorological Society, 2012. <a href="https://doi.org/10.1175/jcli-d-11-00356.1">https://doi.org/10.1175/jcli-d-11-00356.1</a>.'
  ieee: 'S. Fatichi, V. Y. Ivanov, and E. Caporali, “Investigating interannual variability
    of precipitation at the global scale: Is there a connection with seasonality?,”
    <i>Journal of Climate</i>, vol. 25, no. 16. American Meteorological Society, pp.
    5512–5523, 2012.'
  ista: 'Fatichi S, Ivanov VY, Caporali E. 2012. Investigating interannual variability
    of precipitation at the global scale: Is there a connection with seasonality?
    Journal of Climate. 25(16), 5512–5523.'
  mla: 'Fatichi, Simone, et al. “Investigating Interannual Variability of Precipitation
    at the Global Scale: Is There a Connection with Seasonality?” <i>Journal of Climate</i>,
    vol. 25, no. 16, American Meteorological Society, 2012, pp. 5512–23, doi:<a href="https://doi.org/10.1175/jcli-d-11-00356.1">10.1175/jcli-d-11-00356.1</a>.'
  short: S. Fatichi, V.Y. Ivanov, E. Caporali, Journal of Climate 25 (2012) 5512–5523.
das_tickbox: '1'
date_created: 2026-07-27T12:30:24Z
date_published: 2012-08-15T00:00:00Z
date_updated: 2026-08-06T09:54:05Z
day: '15'
doi: 10.1175/jcli-d-11-00356.1
extern: '1'
intvolume: '        25'
issue: '16'
language:
- iso: eng
month: '08'
oa_version: None
page: 5512-5523
publication: Journal of Climate
publication_identifier:
  eissn:
  - 1520-0442
  issn:
  - 0894-8755
publication_status: published
publisher: American Meteorological Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Investigating interannual variability of precipitation at the global scale:
  Is there a connection with seasonality?'
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 25
year: '2012'
...
---
_id: '2263'
abstract:
- lang: eng
  text: Nestin-cre transgenic mice have been widely used to direct recombination to
    neural stem cells (NSCs) and intermediate neural progenitor cells (NPCs). Here
    we report that a readily utilized, and the only commercially available, Nestin-cre
    line is insufficient for directing recombination in early embryonic NSCs and NPCs.
    Analysis of recombination efficiency in multiple cre-dependent reporters and a
    genetic mosaic line revealed consistent temporal and spatial patterns of recombination
    in NSCs and NPCs. For comparison we utilized a knock-in Emx1cre line and found
    robust recombination in NSCs and NPCs in ventricular and subventricular zones
    of the cerebral cortices as early as embryonic day 12.5. In addition we found
    that the rate of Nestin-cre driven recombination only reaches sufficiently high
    levels in NSCs and NPCs during late embryonic and early postnatal periods. These
    findings are important when commercially available cre lines are considered for
    directing recombination to embryonic NSCs and NPCs.
article_processing_charge: No
author:
- first_name: Huixuan
  full_name: Liang, Huixuan
  last_name: Liang
- first_name: Simon
  full_name: Hippenmeyer, Simon
  id: 37B36620-F248-11E8-B48F-1D18A9856A87
  last_name: Hippenmeyer
  orcid: 0000-0003-2279-1061
- first_name: H.
  full_name: Ghashghaei, H.
  last_name: Ghashghaei
citation:
  ama: Liang H, Hippenmeyer S, Ghashghaei H. A Nestin-cre transgenic mouse is insufficient
    for recombination in early embryonic neural progenitors. <i>Biology Open</i>.
    2012;1(12):1200-1203. doi:<a href="https://doi.org/10.1242/bio.20122287">10.1242/bio.20122287</a>
  apa: Liang, H., Hippenmeyer, S., &#38; Ghashghaei, H. (2012). A Nestin-cre transgenic
    mouse is insufficient for recombination in early embryonic neural progenitors.
    <i>Biology Open</i>. Company of Biologists. <a href="https://doi.org/10.1242/bio.20122287">https://doi.org/10.1242/bio.20122287</a>
  chicago: Liang, Huixuan, Simon Hippenmeyer, and H. Ghashghaei. “A Nestin-Cre Transgenic
    Mouse Is Insufficient for Recombination in Early Embryonic Neural Progenitors.”
    <i>Biology Open</i>. Company of Biologists, 2012. <a href="https://doi.org/10.1242/bio.20122287">https://doi.org/10.1242/bio.20122287</a>.
  ieee: H. Liang, S. Hippenmeyer, and H. Ghashghaei, “A Nestin-cre transgenic mouse
    is insufficient for recombination in early embryonic neural progenitors,” <i>Biology
    Open</i>, vol. 1, no. 12. Company of Biologists, pp. 1200–1203, 2012.
  ista: Liang H, Hippenmeyer S, Ghashghaei H. 2012. A Nestin-cre transgenic mouse
    is insufficient for recombination in early embryonic neural progenitors. Biology
    Open. 1(12), 1200–1203.
  mla: Liang, Huixuan, et al. “A Nestin-Cre Transgenic Mouse Is Insufficient for Recombination
    in Early Embryonic Neural Progenitors.” <i>Biology Open</i>, vol. 1, no. 12, Company
    of Biologists, 2012, pp. 1200–03, doi:<a href="https://doi.org/10.1242/bio.20122287">10.1242/bio.20122287</a>.
  short: H. Liang, S. Hippenmeyer, H. Ghashghaei, Biology Open 1 (2012) 1200–1203.
date_created: 2018-12-11T11:56:38Z
date_published: 2012-12-15T00:00:00Z
date_updated: 2026-08-12T09:32:12Z
day: '15'
ddc:
- '576'
department:
- _id: SiHi
doi: 10.1242/bio.20122287
external_id:
  isi:
  - '000209205700005'
file:
- access_level: open_access
  checksum: 605a1800b81227848c361fd6ba7d22ba
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:13:09Z
  date_updated: 2020-07-14T12:45:35Z
  file_id: '4990'
  file_name: IST-2015-387-v1+1_1200.full.pdf
  file_size: 726695
  relation: main_file
file_date_updated: 2020-07-14T12:45:35Z
has_accepted_license: '1'
intvolume: '         1'
isi: 1
issue: '12'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-sa/4.0/
month: '12'
oa: 1
oa_version: Published Version
page: 1200 - 1203
publication: Biology Open
publication_status: published
publisher: Company of Biologists
publist_id: '4682'
pubrep_id: '387'
quality_controlled: '1'
scopus_import: '1'
status: public
title: A Nestin-cre transgenic mouse is insufficient for recombination in early embryonic
  neural progenitors
tmp:
  image: /images/cc_by_nc_sa.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
    BY-NC-SA 4.0)
  short: CC BY-NC-SA (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1
year: '2012'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '22538'
abstract:
- lang: eng
  text: 'Numerous studies have explored the role of vegetation in controlling and
    mediating hydrological states and fluxes at the level of individual processes,
    which has led to improvements in our understanding of plot-scale dynamics. Relatively
    less effort has been directed toward spatially-explicit studies of vegetation-hydrology
    interactions at larger scales of a landscape. Only few continuous, process-oriented
    ecohydrological models had been proposed with structures of varying complexity.
    This study contributes to their further evolution and presents a novel ecohydrological
    model, Tethys-Chloris. The model synthesizes the state-of-the-art knowledge on
    individual processes and coupling mechanisms drawn from the disciplines of hydrology,
    plant physiology, and ecology. Specifically, the model reproduces all essential
    components of the hydrological cycle: it resolves the mass and energy budgets
    in the atmospheric surface layer at the hourly scale, while representing up to
    two layers of vegetation; it includes a module of snowpack evolution; it describes
    the saturated and unsaturated soil water dynamics, processes of runoff generation
    and flow routing. The component of vegetation dynamics parameterizes life cycle
    processes of different plant functional types, including photosynthesis, phenology,
    carbon allocation, and tissue turnover. This study presents a confirmation of
    the long-term, plot-scale model performance by simulating two types of ecosystems
    corresponding to different climate conditions. A consistent and highly satisfactory
    model skill in reproducing the energy and water budgets as well as physiological
    cycles of plants with minimum calibration overhead is demonstrated. Furthermore,
    these applications demonstrate that the model permits the identification of data
    types and observation frequencies crucial for appropriate evaluation of modeled
    dynamics. More importantly, through a synthesis of a wide array of process representations,
    the model ensures that climate, soil, vegetation, and topography collectively
    identify essential modes controlling ecohydrological systems, i.e., that satisfactory
    performance is a result of appropriate mimicking of internal processes.'
article_number: 2011MS000086
article_processing_charge: No
article_type: original
author:
- first_name: Simone
  full_name: Fatichi, Simone
  id: cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6
  last_name: Fatichi
- first_name: V. Y.
  full_name: Ivanov, V. Y.
  last_name: Ivanov
- first_name: E.
  full_name: Caporali, E.
  last_name: Caporali
citation:
  ama: 'Fatichi S, Ivanov VY, Caporali E. A mechanistic ecohydrological model to investigate
    complex interactions in cold and warm water‐controlled environments: 1. Theoretical
    framework and plot‐scale analysis. <i>Journal of Advances in Modeling Earth Systems</i>.
    2012;4(2). doi:<a href="https://doi.org/10.1029/2011ms000086">10.1029/2011ms000086</a>'
  apa: 'Fatichi, S., Ivanov, V. Y., &#38; Caporali, E. (2012). A mechanistic ecohydrological
    model to investigate complex interactions in cold and warm water‐controlled environments:
    1. Theoretical framework and plot‐scale analysis. <i>Journal of Advances in Modeling
    Earth Systems</i>. American Geophysical Union. <a href="https://doi.org/10.1029/2011ms000086">https://doi.org/10.1029/2011ms000086</a>'
  chicago: 'Fatichi, Simone, V. Y. Ivanov, and E. Caporali. “A Mechanistic Ecohydrological
    Model to Investigate Complex Interactions in Cold and Warm Water‐controlled Environments:
    1. Theoretical Framework and Plot‐scale Analysis.” <i>Journal of Advances in Modeling
    Earth Systems</i>. American Geophysical Union, 2012. <a href="https://doi.org/10.1029/2011ms000086">https://doi.org/10.1029/2011ms000086</a>.'
  ieee: 'S. Fatichi, V. Y. Ivanov, and E. Caporali, “A mechanistic ecohydrological
    model to investigate complex interactions in cold and warm water‐controlled environments:
    1. Theoretical framework and plot‐scale analysis,” <i>Journal of Advances in Modeling
    Earth Systems</i>, vol. 4, no. 2. American Geophysical Union, 2012.'
  ista: 'Fatichi S, Ivanov VY, Caporali E. 2012. A mechanistic ecohydrological model
    to investigate complex interactions in cold and warm water‐controlled environments:
    1. Theoretical framework and plot‐scale analysis. Journal of Advances in Modeling
    Earth Systems. 4(2), 2011MS000086.'
  mla: 'Fatichi, Simone, et al. “A Mechanistic Ecohydrological Model to Investigate
    Complex Interactions in Cold and Warm Water‐controlled Environments: 1. Theoretical
    Framework and Plot‐scale Analysis.” <i>Journal of Advances in Modeling Earth Systems</i>,
    vol. 4, no. 2, 2011MS000086, American Geophysical Union, 2012, doi:<a href="https://doi.org/10.1029/2011ms000086">10.1029/2011ms000086</a>.'
  short: S. Fatichi, V.Y. Ivanov, E. Caporali, Journal of Advances in Modeling Earth
    Systems 4 (2012).
das_tickbox: '1'
date_created: 2026-07-27T12:30:24Z
date_published: 2012-05-30T00:00:00Z
date_updated: 2026-08-12T12:02:45Z
day: '30'
doi: 10.1029/2011ms000086
extern: '1'
intvolume: '         4'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1029/2011MS000086
month: '05'
oa: 1
oa_version: Published Version
publication: Journal of Advances in Modeling Earth Systems
publication_identifier:
  eissn:
  - 1942-2466
publication_status: published
publisher: American Geophysical Union
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'A mechanistic ecohydrological model to investigate complex interactions in
  cold and warm water‐controlled environments: 1. Theoretical framework and plot‐scale
  analysis'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 4
year: '2012'
...
---
_id: '2965'
abstract:
- lang: eng
  text: Dieser Artikel soll die sechs verschiedenen Creative Commons Lizenzen erläutern
    und ihre Bedeutung im Rahmen des wissenschaftlichen Publizierens und des Open
    Access erklären (CC-BY, CC-BY-SA, CC-BY-NC, CC-BY-ND, CC-BYNC-SA, CC-BY-NC-ND).
article_processing_charge: No
author:
- first_name: Patrick
  full_name: Danowski, Patrick
  id: 2EBD1598-F248-11E8-B48F-1D18A9856A87
  last_name: Danowski
  orcid: 0000-0002-6026-4409
citation:
  ama: 'Danowski P. Kontext Open Access: Creative Commons. <i>Mitteilungen der Vereinigung
    Österreichischer Bibliothekarinnen und Bibliothekare</i>. 2012;65(2):200-212.'
  apa: 'Danowski, P. (2012). Kontext Open Access: Creative Commons. <i>Mitteilungen
    der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare</i>. Vereinigung
    Österreichischer Bibliothekarinnen und Bibliothekare.'
  chicago: 'Danowski, Patrick. “Kontext Open Access: Creative Commons.” <i>Mitteilungen
    der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare</i>. Vereinigung
    Österreichischer Bibliothekarinnen und Bibliothekare, 2012.'
  ieee: 'P. Danowski, “Kontext Open Access: Creative Commons,” <i>Mitteilungen der
    Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare</i>, vol. 65,
    no. 2. Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare, pp. 200–212,
    2012.'
  ista: 'Danowski P. 2012. Kontext Open Access: Creative Commons. Mitteilungen der
    Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare. 65(2), 200–212.'
  mla: 'Danowski, Patrick. “Kontext Open Access: Creative Commons.” <i>Mitteilungen
    der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare</i>, vol.
    65, no. 2, Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare, 2012,
    pp. 200–12.'
  short: P. Danowski, Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen
    und Bibliothekare 65 (2012) 200–212.
corr_author: '1'
das_tickbox: '1'
date_created: 2018-12-11T12:00:35Z
date_published: 2012-09-01T00:00:00Z
date_updated: 2026-08-12T14:15:14Z
day: '01'
ddc:
- '020'
department:
- _id: E-Lib
file:
- access_level: open_access
  checksum: 162eea47d9d840c26b496ba6ae4d1c09
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:08:42Z
  date_updated: 2020-07-14T12:45:57Z
  file_id: '4703'
  file_name: IST-2012-95-v1+1_sp-beitrag_danowski_kontext_open_access_creative_commons.pdf
  file_size: 503345
  relation: main_file
file_date_updated: 2020-07-14T12:45:57Z
has_accepted_license: '1'
intvolume: '        65'
issue: '2'
language:
- iso: ger
license: https://creativecommons.org/licenses/by/4.0/
main_file_link:
- open_access: '1'
  url: ' http://hdl.handle.net/10760/17625'
month: '09'
oa: 1
oa_version: Published Version
page: 200 - 212
popular_science: '1'
publication: Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare
publication_status: published
publisher: Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare
publist_id: '3754'
pubrep_id: '95'
scopus_import: '1'
status: public
title: 'Kontext Open Access: Creative Commons'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 65
year: '2012'
...
---
_id: '3262'
abstract:
- lang: eng
  text: Living cells must control the reading out or &quot;expression&quot; of information
    encoded in their genomes, and this regulation often is mediated by transcription
    factors--proteins that bind to DNA and either enhance or repress the expression
    of nearby genes. But the expression of transcription factor proteins is itself
    regulated, and many transcription factors regulate their own expression in addition
    to responding to other input signals. Here we analyze the simplest of such self-regulatory
    circuits, asking how parameters can be chosen to optimize information transmission
    from inputs to outputs in the steady state. Some nonzero level of self-regulation
    is almost always optimal, with self-activation dominant when transcription factor
    concentrations are low and self-repression dominant when concentrations are high.
    In steady state the optimal self-activation is never strong enough to induce bistability,
    although there is a limit in which the optimal parameters are very close to the
    critical point.
acknowledgement: "We thank T. Gregor, E. F. Wieschaus, and, especially, C. G. Callan
  for helpful discussions.\r\nWork at Princeton was supported in part by NSF Grants
  No. PHY–0957573 and No. CCF–0939370, by NIH Grant No. R01 GM077599, and by the W.
  M. Keck Foundation. For part of this work, G.T. was supported in part by NSF Grant
  No. EF–0928048 and by the Vice Provost for Research at the University of Pennsylvania."
article_number: '041903'
article_processing_charge: No
arxiv: 1
author:
- first_name: Gasper
  full_name: Tkacik, Gasper
  id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
  last_name: Tkacik
  orcid: 0000-0002-6699-1455
- first_name: Aleksandra
  full_name: Walczak, Aleksandra
  last_name: Walczak
- first_name: William
  full_name: Bialek, William
  last_name: Bialek
citation:
  ama: Tkačik G, Walczak A, Bialek W. Optimizing information flow in small genetic
    networks. III. A self-interacting gene. <i>Physical Review E</i>. 2012;85(4).
    doi:<a href="https://doi.org/10.1103/PhysRevE.85.041903">10.1103/PhysRevE.85.041903</a>
  apa: Tkačik, G., Walczak, A., &#38; Bialek, W. (2012). Optimizing information flow
    in small genetic networks. III. A self-interacting gene. <i>Physical Review E</i>.
    American Physical Society. <a href="https://doi.org/10.1103/PhysRevE.85.041903">https://doi.org/10.1103/PhysRevE.85.041903</a>
  chicago: Tkačik, Gašper, Aleksandra Walczak, and William Bialek. “Optimizing Information
    Flow in Small Genetic Networks. III. A Self-Interacting Gene.” <i>Physical Review
    E</i>. American Physical Society, 2012. <a href="https://doi.org/10.1103/PhysRevE.85.041903">https://doi.org/10.1103/PhysRevE.85.041903</a>.
  ieee: G. Tkačik, A. Walczak, and W. Bialek, “Optimizing information flow in small
    genetic networks. III. A self-interacting gene,” <i>Physical Review E</i>, vol.
    85, no. 4. American Physical Society, 2012.
  ista: Tkačik G, Walczak A, Bialek W. 2012. Optimizing information flow in small
    genetic networks. III. A self-interacting gene. Physical Review E. 85(4), 041903.
  mla: Tkačik, Gašper, et al. “Optimizing Information Flow in Small Genetic Networks.
    III. A Self-Interacting Gene.” <i>Physical Review E</i>, vol. 85, no. 4, 041903,
    American Physical Society, 2012, doi:<a href="https://doi.org/10.1103/PhysRevE.85.041903">10.1103/PhysRevE.85.041903</a>.
  short: G. Tkačik, A. Walczak, W. Bialek, Physical Review E 85 (2012).
corr_author: '1'
das_tickbox: '1'
date_created: 2018-12-11T12:02:20Z
date_published: 2012-04-01T00:00:00Z
date_updated: 2026-08-12T14:29:02Z
day: '01'
department:
- _id: GaTk
doi: 10.1103/PhysRevE.85.041903
external_id:
  arxiv:
  - '1112.5026'
  isi:
  - '000302410200006'
intvolume: '        85'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1112.5026
month: '04'
oa: 1
oa_version: Preprint
publication: Physical Review E
publication_status: published
publisher: American Physical Society
publist_id: '3386'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Optimizing information flow in small genetic networks. III. A self-interacting
  gene
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 85
year: '2012'
...
---
_id: '2936'
abstract:
- lang: eng
  text: The notion of delays arises naturally in many computational models, such as,
    in the design of circuits, control systems, and dataflow languages. In this work,
    we introduce automata with delay blocks (ADBs), extending finite state automata
    with variable time delay blocks, for deferring individual transition output symbols,
    in a discrete-time setting. We show that the ADB languages strictly subsume the
    regular languages, and are incomparable in expressive power to the context-free
    languages. We show that ADBs are closed under union, concatenation and Kleene
    star, and under intersection with regular languages, but not closed under complementation
    and intersection with other ADB languages. We show that the emptiness and the
    membership problems are decidable in polynomial time for ADBs, whereas the universality
    problem is undecidable. Finally we consider the linear-time model checking problem,
    i.e., whether the language of an ADB is contained in a regular language, and show
    that the model checking problem is PSPACE-complete. Copyright 2012 ACM.
acknowledgement: 'This work has been financially supported in part by the European
  Commission FP7-ICT Cognitive Systems, Interaction, and Robotics under the contract
  # 270180 (NOPTILUS); by Fundacao para Ciencia e Tecnologia under project PTDC/EEA-CRO/104901/2008
  (Modeling and control of Networked vehicle systems in persistent autonomous operations);
  by Austrian Science Fund (FWF) Grant No P 23499-N23 on Modern Graph Algorithmic
  Techniques in Formal Verification; FWF NFN Grant No S11407-N23 (RiSE); ERC Start
  grant (279307: Graph Games); Microsoft faculty fellows award; ERC Advanced grant
  QUAREM; and FWF Grant No S11403-N23 (RiSE).'
article_processing_charge: No
arxiv: 1
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Vinayak
  full_name: Prabhu, Vinayak
  last_name: Prabhu
citation:
  ama: 'Chatterjee K, Henzinger TA, Prabhu V. Finite automata with time delay blocks.
    In: <i>Proceedings of the 10th ACM International Conference on Embedded Software</i>.
    ACM; 2012:43-52. doi:<a href="https://doi.org/10.1145/2380356.2380370">10.1145/2380356.2380370</a>'
  apa: 'Chatterjee, K., Henzinger, T. A., &#38; Prabhu, V. (2012). Finite automata
    with time delay blocks. In <i>Proceedings of the 10th ACM international conference
    on Embedded software</i> (pp. 43–52). Tampere, Finland: ACM. <a href="https://doi.org/10.1145/2380356.2380370">https://doi.org/10.1145/2380356.2380370</a>'
  chicago: Chatterjee, Krishnendu, Thomas A Henzinger, and Vinayak Prabhu. “Finite
    Automata with Time Delay Blocks.” In <i>Proceedings of the 10th ACM International
    Conference on Embedded Software</i>, 43–52. ACM, 2012. <a href="https://doi.org/10.1145/2380356.2380370">https://doi.org/10.1145/2380356.2380370</a>.
  ieee: K. Chatterjee, T. A. Henzinger, and V. Prabhu, “Finite automata with time
    delay blocks,” in <i>Proceedings of the 10th ACM international conference on Embedded
    software</i>, Tampere, Finland, 2012, pp. 43–52.
  ista: 'Chatterjee K, Henzinger TA, Prabhu V. 2012. Finite automata with time delay
    blocks. Proceedings of the 10th ACM international conference on Embedded software.
    EMSOFT: Embedded Software , 43–52.'
  mla: Chatterjee, Krishnendu, et al. “Finite Automata with Time Delay Blocks.” <i>Proceedings
    of the 10th ACM International Conference on Embedded Software</i>, ACM, 2012,
    pp. 43–52, doi:<a href="https://doi.org/10.1145/2380356.2380370">10.1145/2380356.2380370</a>.
  short: K. Chatterjee, T.A. Henzinger, V. Prabhu, in:, Proceedings of the 10th ACM
    International Conference on Embedded Software, ACM, 2012, pp. 43–52.
conference:
  end_date: 2012-10-12
  location: Tampere, Finland
  name: 'EMSOFT: Embedded Software '
  start_date: 2012-10-07
date_created: 2018-12-11T12:00:26Z
date_published: 2012-10-01T00:00:00Z
date_updated: 2026-08-12T14:34:15Z
day: '01'
department:
- _id: KrCh
- _id: ToHe
doi: 10.1145/2380356.2380370
ec_funded: 1
external_id:
  arxiv:
  - '1207.7019'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1207.7019
month: '10'
oa: 1
oa_version: Preprint
page: 43 - 52
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
publication: Proceedings of the 10th ACM international conference on Embedded software
publication_status: published
publisher: ACM
publist_id: '3799'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Finite automata with time delay blocks
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2012'
...
---
_id: '10907'
abstract:
- lang: eng
  text: This paper presents a method to create a model of an articulated object using
    the planar motion in an initialization video. The model consists of rigid parts
    connected by points of articulation. The rigid parts are described by the positions
    of salient feature-points tracked throughout the video. Following a filtering
    step that identifies points that belong to different objects, rigid parts are
    found by a grouping process in a graph pyramid. Valid articulation points are
    selected by verifying multiple hypotheses for each pair of parts.
acknowledgement: This work has been partially supported by the Austrian Science Fund
  under grants S9103-N13 and P18716-N13.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Nicole M.
  full_name: Artner, Nicole M.
  last_name: Artner
- first_name: Adrian
  full_name: Ion, Adrian
  id: 29F89302-F248-11E8-B48F-1D18A9856A87
  last_name: Ion
- first_name: Walter G.
  full_name: Kropatsch, Walter G.
  last_name: Kropatsch
citation:
  ama: 'Artner NM, Ion A, Kropatsch WG. Spatio-temporal extraction of articulated
    models in a graph pyramid. In: Jiang X, Ferrer M, Torsello A, eds. <i>Graph-Based
    Representations in Pattern Recognition</i>. Vol 6658. LNIP. Berlin, Heidelberg:
    Springer; 2011:215-224. doi:<a href="https://doi.org/10.1007/978-3-642-20844-7_22">10.1007/978-3-642-20844-7_22</a>'
  apa: 'Artner, N. M., Ion, A., &#38; Kropatsch, W. G. (2011). Spatio-temporal extraction
    of articulated models in a graph pyramid. In X. Jiang, M. Ferrer, &#38; A. Torsello
    (Eds.), <i>Graph-Based Representations in Pattern Recognition</i> (Vol. 6658,
    pp. 215–224). Berlin, Heidelberg: Springer. <a href="https://doi.org/10.1007/978-3-642-20844-7_22">https://doi.org/10.1007/978-3-642-20844-7_22</a>'
  chicago: 'Artner, Nicole M., Adrian Ion, and Walter G. Kropatsch. “Spatio-Temporal
    Extraction of Articulated Models in a Graph Pyramid.” In <i>Graph-Based Representations
    in Pattern Recognition</i>, edited by Xiaoyi Jiang, Miquel Ferrer, and Andrea
    Torsello, 6658:215–24. LNIP. Berlin, Heidelberg: Springer, 2011. <a href="https://doi.org/10.1007/978-3-642-20844-7_22">https://doi.org/10.1007/978-3-642-20844-7_22</a>.'
  ieee: N. M. Artner, A. Ion, and W. G. Kropatsch, “Spatio-temporal extraction of
    articulated models in a graph pyramid,” in <i>Graph-Based Representations in Pattern
    Recognition</i>, Münster, Germany, 2011, vol. 6658, pp. 215–224.
  ista: 'Artner NM, Ion A, Kropatsch WG. 2011. Spatio-temporal extraction of articulated
    models in a graph pyramid. Graph-Based Representations in Pattern Recognition.
    GbRPR: Graph-based Representations in Pattern RecognitionLNIP, LNCS, vol. 6658,
    215–224.'
  mla: Artner, Nicole M., et al. “Spatio-Temporal Extraction of Articulated Models
    in a Graph Pyramid.” <i>Graph-Based Representations in Pattern Recognition</i>,
    edited by Xiaoyi Jiang et al., vol. 6658, Springer, 2011, pp. 215–24, doi:<a href="https://doi.org/10.1007/978-3-642-20844-7_22">10.1007/978-3-642-20844-7_22</a>.
  short: N.M. Artner, A. Ion, W.G. Kropatsch, in:, X. Jiang, M. Ferrer, A. Torsello
    (Eds.), Graph-Based Representations in Pattern Recognition, Springer, Berlin,
    Heidelberg, 2011, pp. 215–224.
conference:
  end_date: 2011-05-20
  location: Münster, Germany
  name: 'GbRPR: Graph-based Representations in Pattern Recognition'
  start_date: 2011-05-18
corr_author: '1'
date_created: 2022-03-21T08:08:35Z
date_published: 2011-06-01T00:00:00Z
date_updated: 2024-10-09T21:02:32Z
day: '01'
department:
- _id: HeEd
doi: 10.1007/978-3-642-20844-7_22
editor:
- first_name: Xiaoyi
  full_name: Jiang, Xiaoyi
  last_name: Jiang
- first_name: Miquel
  full_name: Ferrer, Miquel
  last_name: Ferrer
- first_name: Andrea
  full_name: Torsello, Andrea
  last_name: Torsello
intvolume: '      6658'
language:
- iso: eng
month: '06'
oa_version: None
page: 215-224
place: Berlin, Heidelberg
publication: Graph-Based Representations in Pattern Recognition
publication_identifier:
  eisbn:
  - '9783642208447'
  eissn:
  - 1611-3349
  isbn:
  - '9783642208430'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer
quality_controlled: '1'
scopus_import: '1'
series_title: LNIP
status: public
title: Spatio-temporal extraction of articulated models in a graph pyramid
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 6658
year: '2011'
...
---
_id: '11094'
abstract:
- lang: eng
  text: Nuclear pore complexes (NPCs) assemble at the end of mitosis during nuclear
    envelope (NE) reformation and into an intact NE as cells progress through interphase.
    Although recent studies have shown that NPC formation occurs by two different
    molecular mechanisms at two distinct cell cycle stages, little is known about
    the molecular players that mediate the fusion of the outer and inner nuclear membranes
    to form pores. In this paper, we provide evidence that the transmembrane nucleoporin
    (Nup), POM121, but not the Nup107–160 complex, is present at new pore assembly
    sites at a time that coincides with inner nuclear membrane (INM) and outer nuclear
    membrane (ONM) fusion. Overexpression of POM121 resulted in juxtaposition of the
    INM and ONM. Additionally, Sun1, an INM protein that is known to interact with
    the cytoskeleton, was specifically required for interphase assembly and localized
    with POM121 at forming pores. We propose a model in which POM121 and Sun1 interact
    transiently to promote early steps of interphase NPC assembly.
article_processing_charge: No
article_type: original
author:
- first_name: Jessica A.
  full_name: Talamas, Jessica A.
  last_name: Talamas
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: Talamas JA, Hetzer M. POM121 and Sun1 play a role in early steps of interphase
    NPC assembly. <i>Journal of Cell Biology</i>. 2011;194(1):27-37. doi:<a href="https://doi.org/10.1083/jcb.201012154">10.1083/jcb.201012154</a>
  apa: Talamas, J. A., &#38; Hetzer, M. (2011). POM121 and Sun1 play a role in early
    steps of interphase NPC assembly. <i>Journal of Cell Biology</i>. Rockefeller
    University Press. <a href="https://doi.org/10.1083/jcb.201012154">https://doi.org/10.1083/jcb.201012154</a>
  chicago: Talamas, Jessica A., and Martin Hetzer. “POM121 and Sun1 Play a Role in
    Early Steps of Interphase NPC Assembly.” <i>Journal of Cell Biology</i>. Rockefeller
    University Press, 2011. <a href="https://doi.org/10.1083/jcb.201012154">https://doi.org/10.1083/jcb.201012154</a>.
  ieee: J. A. Talamas and M. Hetzer, “POM121 and Sun1 play a role in early steps of
    interphase NPC assembly,” <i>Journal of Cell Biology</i>, vol. 194, no. 1. Rockefeller
    University Press, pp. 27–37, 2011.
  ista: Talamas JA, Hetzer M. 2011. POM121 and Sun1 play a role in early steps of
    interphase NPC assembly. Journal of Cell Biology. 194(1), 27–37.
  mla: Talamas, Jessica A., and Martin Hetzer. “POM121 and Sun1 Play a Role in Early
    Steps of Interphase NPC Assembly.” <i>Journal of Cell Biology</i>, vol. 194, no.
    1, Rockefeller University Press, 2011, pp. 27–37, doi:<a href="https://doi.org/10.1083/jcb.201012154">10.1083/jcb.201012154</a>.
  short: J.A. Talamas, M. Hetzer, Journal of Cell Biology 194 (2011) 27–37.
date_created: 2022-04-07T07:52:18Z
date_published: 2011-07-04T00:00:00Z
date_updated: 2024-10-14T11:26:10Z
day: '04'
doi: 10.1083/jcb.201012154
extern: '1'
external_id:
  pmid:
  - '21727197'
intvolume: '       194'
issue: '1'
keyword:
- Cell Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1083/jcb.201012154
month: '07'
oa: 1
oa_version: Published Version
page: 27-37
pmid: 1
publication: Journal of Cell Biology
publication_identifier:
  eissn:
  - 1540-8140
  issn:
  - 0021-9525
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: POM121 and Sun1 play a role in early steps of interphase NPC assembly
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 194
year: '2011'
...
---
_id: '11095'
article_processing_charge: No
article_type: letter_note
author:
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
- first_name: Giacomo
  full_name: Cavalli, Giacomo
  last_name: Cavalli
citation:
  ama: Hetzer M, Cavalli G. Editorial overview. <i>Current Opinion in Cell Biology</i>.
    2011;23(3):255-257. doi:<a href="https://doi.org/10.1016/j.ceb.2011.04.013">10.1016/j.ceb.2011.04.013</a>
  apa: Hetzer, M., &#38; Cavalli, G. (2011). Editorial overview. <i>Current Opinion
    in Cell Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.ceb.2011.04.013">https://doi.org/10.1016/j.ceb.2011.04.013</a>
  chicago: Hetzer, Martin, and Giacomo Cavalli. “Editorial Overview.” <i>Current Opinion
    in Cell Biology</i>. Elsevier, 2011. <a href="https://doi.org/10.1016/j.ceb.2011.04.013">https://doi.org/10.1016/j.ceb.2011.04.013</a>.
  ieee: M. Hetzer and G. Cavalli, “Editorial overview,” <i>Current Opinion in Cell
    Biology</i>, vol. 23, no. 3. Elsevier, pp. 255–257, 2011.
  ista: Hetzer M, Cavalli G. 2011. Editorial overview. Current Opinion in Cell Biology.
    23(3), 255–257.
  mla: Hetzer, Martin, and Giacomo Cavalli. “Editorial Overview.” <i>Current Opinion
    in Cell Biology</i>, vol. 23, no. 3, Elsevier, 2011, pp. 255–57, doi:<a href="https://doi.org/10.1016/j.ceb.2011.04.013">10.1016/j.ceb.2011.04.013</a>.
  short: M. Hetzer, G. Cavalli, Current Opinion in Cell Biology 23 (2011) 255–257.
date_created: 2022-04-07T07:52:27Z
date_published: 2011-06-01T00:00:00Z
date_updated: 2024-10-14T11:26:20Z
day: '01'
doi: 10.1016/j.ceb.2011.04.013
extern: '1'
external_id:
  pmid:
  - '21592757'
intvolume: '        23'
issue: '3'
keyword:
- Cell Biology
language:
- iso: eng
month: '06'
oa_version: None
page: 255-257
pmid: 1
publication: Current Opinion in Cell Biology
publication_identifier:
  issn:
  - 0955-0674
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Editorial overview
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 23
year: '2011'
...
---
_id: '11096'
abstract:
- lang: eng
  text: As the gatekeepers of the eukaryotic cell nucleus, nuclear pore complexes
    (NPCs) mediate all molecular trafficking between the nucleoplasm and the cytoplasm.
    In recent years, transport-independent functions of NPC components, nucleoporins,
    have been identified including roles in chromatin organization and gene regulation.
    Here, we summarize our current view of the NPC as a dynamic hub for the integration
    of chromatin regulation and nuclear trafficking and discuss the functional interplay
    between nucleoporins and the nuclear genome.
article_processing_charge: No
article_type: original
author:
- first_name: Yun
  full_name: Liang, Yun
  last_name: Liang
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: Liang Y, Hetzer M. Functional interactions between nucleoporins and chromatin.
    <i>Current Opinion in Cell Biology</i>. 2011;23(1):65-70. doi:<a href="https://doi.org/10.1016/j.ceb.2010.09.008">10.1016/j.ceb.2010.09.008</a>
  apa: Liang, Y., &#38; Hetzer, M. (2011). Functional interactions between nucleoporins
    and chromatin. <i>Current Opinion in Cell Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.ceb.2010.09.008">https://doi.org/10.1016/j.ceb.2010.09.008</a>
  chicago: Liang, Yun, and Martin Hetzer. “Functional Interactions between Nucleoporins
    and Chromatin.” <i>Current Opinion in Cell Biology</i>. Elsevier, 2011. <a href="https://doi.org/10.1016/j.ceb.2010.09.008">https://doi.org/10.1016/j.ceb.2010.09.008</a>.
  ieee: Y. Liang and M. Hetzer, “Functional interactions between nucleoporins and
    chromatin,” <i>Current Opinion in Cell Biology</i>, vol. 23, no. 1. Elsevier,
    pp. 65–70, 2011.
  ista: Liang Y, Hetzer M. 2011. Functional interactions between nucleoporins and
    chromatin. Current Opinion in Cell Biology. 23(1), 65–70.
  mla: Liang, Yun, and Martin Hetzer. “Functional Interactions between Nucleoporins
    and Chromatin.” <i>Current Opinion in Cell Biology</i>, vol. 23, no. 1, Elsevier,
    2011, pp. 65–70, doi:<a href="https://doi.org/10.1016/j.ceb.2010.09.008">10.1016/j.ceb.2010.09.008</a>.
  short: Y. Liang, M. Hetzer, Current Opinion in Cell Biology 23 (2011) 65–70.
date_created: 2022-04-07T07:52:37Z
date_published: 2011-02-01T00:00:00Z
date_updated: 2024-10-14T11:26:31Z
day: '01'
doi: 10.1016/j.ceb.2010.09.008
extern: '1'
external_id:
  pmid:
  - '21030234'
intvolume: '        23'
issue: '1'
keyword:
- Cell Biology
language:
- iso: eng
month: '02'
oa_version: None
page: 65-70
pmid: 1
publication: Current Opinion in Cell Biology
publication_identifier:
  issn:
  - 0955-0674
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Functional interactions between nucleoporins and chromatin
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 23
year: '2011'
...
---
_id: '11100'
abstract:
- lang: eng
  text: Eukaryotic cell function depends on the physical separation of nucleoplasmic
    and cytoplasmic components by the nuclear envelope (NE). Molecular communication
    between the two compartments involves active, signal-mediated trafficking, a function
    that is exclusively performed by nuclear pore complexes (NPCs). The individual
    NPC components and the mechanisms that are involved in nuclear trafficking are
    well documented and have become textbook knowledge. However, in addition to their
    roles as nuclear gatekeepers, NPC components-nucleoporins-have been shown to have
    critical roles in chromatin organization and gene regulation. These findings have
    sparked new enthusiasm to study the roles of this multiprotein complex in nuclear
    organization and explore novel functions that in some cases appear to go beyond
    a role in transport. Here, we discuss our present view of NPC biogenesis, which
    is tightly linked to proper cell cycle progression and cell differentiation. In
    addition, we summarize new data suggesting that NPCs represent dynamic hubs for
    the integration of gene regulation and nuclear transport processes.
article_processing_charge: No
article_type: original
author:
- first_name: M.
  full_name: Capelson, M.
  last_name: Capelson
- first_name: C.
  full_name: Doucet, C.
  last_name: Doucet
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: 'Capelson M, Doucet C, Hetzer M. Nuclear pore complexes: Guardians of the nuclear
    genome. <i>Cold Spring Harbor Symposia on Quantitative Biology</i>. 2011;75:585-597.
    doi:<a href="https://doi.org/10.1101/sqb.2010.75.059">10.1101/sqb.2010.75.059</a>'
  apa: 'Capelson, M., Doucet, C., &#38; Hetzer, M. (2011). Nuclear pore complexes:
    Guardians of the nuclear genome. <i>Cold Spring Harbor Symposia on Quantitative
    Biology</i>. Cold Spring Harbor Laboratory Press. <a href="https://doi.org/10.1101/sqb.2010.75.059">https://doi.org/10.1101/sqb.2010.75.059</a>'
  chicago: 'Capelson, M., C. Doucet, and Martin Hetzer. “Nuclear Pore Complexes: Guardians
    of the Nuclear Genome.” <i>Cold Spring Harbor Symposia on Quantitative Biology</i>.
    Cold Spring Harbor Laboratory Press, 2011. <a href="https://doi.org/10.1101/sqb.2010.75.059">https://doi.org/10.1101/sqb.2010.75.059</a>.'
  ieee: 'M. Capelson, C. Doucet, and M. Hetzer, “Nuclear pore complexes: Guardians
    of the nuclear genome,” <i>Cold Spring Harbor Symposia on Quantitative Biology</i>,
    vol. 75. Cold Spring Harbor Laboratory Press, pp. 585–597, 2011.'
  ista: 'Capelson M, Doucet C, Hetzer M. 2011. Nuclear pore complexes: Guardians of
    the nuclear genome. Cold Spring Harbor Symposia on Quantitative Biology. 75, 585–597.'
  mla: 'Capelson, M., et al. “Nuclear Pore Complexes: Guardians of the Nuclear Genome.”
    <i>Cold Spring Harbor Symposia on Quantitative Biology</i>, vol. 75, Cold Spring
    Harbor Laboratory Press, 2011, pp. 585–97, doi:<a href="https://doi.org/10.1101/sqb.2010.75.059">10.1101/sqb.2010.75.059</a>.'
  short: M. Capelson, C. Doucet, M. Hetzer, Cold Spring Harbor Symposia on Quantitative
    Biology 75 (2011) 585–597.
date_created: 2022-04-07T07:53:18Z
date_published: 2011-04-18T00:00:00Z
date_updated: 2024-10-14T11:27:48Z
day: '18'
doi: 10.1101/sqb.2010.75.059
extern: '1'
external_id:
  pmid:
  - '21502404'
intvolume: '        75'
keyword:
- Genetics
- Molecular Biology
- Biochemistry
language:
- iso: eng
month: '04'
oa_version: None
page: 585-597
pmid: 1
publication: Cold Spring Harbor Symposia on Quantitative Biology
publication_identifier:
  isbn:
  - '9781936113071'
  issn:
  - 0091-7451
  - 1943-4456
publication_status: published
publisher: Cold Spring Harbor Laboratory Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Nuclear pore complexes: Guardians of the nuclear genome'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 75
year: '2011'
...
---
_id: '112'
abstract:
- lang: eng
  text: Particle beams are important tools for probing atomic and molecular interactions.
    Here we demonstrate that particle beams also offer a unique opportunity to investigate
    interactions in macroscopic systems, such as granular media. Motivated by recent
    experiments on streams of grains that exhibit liquid-like breakup into droplets,
    we use molecular dynamics simulations to investigate the evolution of a dense
    stream of macroscopic spheres accelerating out of an opening at the bottom of
    a reservoir. We show how nanoscale details associated with energy dissipation
    during collisions modify the stream\'s macroscopic behavior. We find that inelastic
    collisions collimate the stream, while the presence of short-range attractive
    interactions drives structure formation. Parameterizing the collision dynamics
    by the coefficient of restitution (i.e., the ratio of relative velocities before
    and after impact) and the strength of the cohesive interaction, we map out a spectrum
    of behaviors that ranges from gaslike jets in which all grains drift apart to
    liquid-like streams that break into large droplets containing hundreds of grains.
    We also find a new, intermediate regime in which small aggregates form by capture
    from the gas phase, similar to what can be observed in molecular beams. Our results
    show that nearly all aspects of stream behavior are closely related to the velocity
    gradient associated with vertical free fall. Led by this observation, we propose
    a simple energy balance model to explain the droplet formation process. The qualitative
    as well as many quantitative features of the simulations and the model compare
    well with available experimental data and provide a first quantitative measure
    of the role of attractions in freely cooling granular streams.
acknowledgement: This work was supported by the NSF through CBET-0933242. We acknowledge
  use of shared facilities provided by the Keck Facility for Ultrafast Imaging at
  the University of Chicago and by the Chicago MRSEC through NSF DMR-0820054. Software
  support by Itasca Consulting Group, Inc., under the Itasca Educational Partnership
  is gratefully acknowledged. H.G. thanks the German-American Fulbright Commission
  for fellowship support during his stay at the University of Chicago.
article_number: '051302'
arxiv: 1
author:
- first_name: Scott R
  full_name: Waitukaitis, Scott R
  id: 3A1FFC16-F248-11E8-B48F-1D18A9856A87
  last_name: Waitukaitis
  orcid: 0000-0002-2299-3176
- first_name: Helge
  full_name: Grütjen, Helge
  last_name: Grütjen
- first_name: John
  full_name: Royer, John
  last_name: Royer
- first_name: Heinrich
  full_name: Jaeger, Heinrich
  last_name: Jaeger
citation:
  ama: Waitukaitis SR, Grütjen H, Royer J, Jaeger H. Droplet and cluster formation
    in freely falling granular streams. <i>Physical Review E</i>. 2011;83(5). doi:<a
    href="https://doi.org/10.1103/PhysRevE.83.051302">10.1103/PhysRevE.83.051302</a>
  apa: Waitukaitis, S. R., Grütjen, H., Royer, J., &#38; Jaeger, H. (2011). Droplet
    and cluster formation in freely falling granular streams. <i>Physical Review E</i>.
    American Physical Society. <a href="https://doi.org/10.1103/PhysRevE.83.051302">https://doi.org/10.1103/PhysRevE.83.051302</a>
  chicago: Waitukaitis, Scott R, Helge Grütjen, John Royer, and Heinrich Jaeger. “Droplet
    and Cluster Formation in Freely Falling Granular Streams.” <i>Physical Review
    E</i>. American Physical Society, 2011. <a href="https://doi.org/10.1103/PhysRevE.83.051302">https://doi.org/10.1103/PhysRevE.83.051302</a>.
  ieee: S. R. Waitukaitis, H. Grütjen, J. Royer, and H. Jaeger, “Droplet and cluster
    formation in freely falling granular streams,” <i>Physical Review E</i>, vol.
    83, no. 5. American Physical Society, 2011.
  ista: Waitukaitis SR, Grütjen H, Royer J, Jaeger H. 2011. Droplet and cluster formation
    in freely falling granular streams. Physical Review E. 83(5), 051302.
  mla: Waitukaitis, Scott R., et al. “Droplet and Cluster Formation in Freely Falling
    Granular Streams.” <i>Physical Review E</i>, vol. 83, no. 5, 051302, American
    Physical Society, 2011, doi:<a href="https://doi.org/10.1103/PhysRevE.83.051302">10.1103/PhysRevE.83.051302</a>.
  short: S.R. Waitukaitis, H. Grütjen, J. Royer, H. Jaeger, Physical Review E 83 (2011).
date_created: 2018-12-11T11:44:41Z
date_published: 2011-05-12T00:00:00Z
date_updated: 2021-01-12T06:48:25Z
day: '12'
doi: 10.1103/PhysRevE.83.051302
extern: '1'
external_id:
  arxiv:
  - '1006.1371'
intvolume: '        83'
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1006.1371
month: '05'
oa: 1
oa_version: Preprint
publication: Physical Review E
publication_status: published
publisher: American Physical Society
publist_id: '7942'
quality_controlled: '1'
status: public
title: Droplet and cluster formation in freely falling granular streams
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 83
year: '2011'
...
---
_id: '11673'
abstract:
- lang: eng
  text: Given only the URL of a Web page, can we identify its topic? We study this
    problem in detail by exploring a large number of different feature sets and algorithms
    on several datasets. We also show that the inherent overlap between topics and
    the sparsity of the information in URLs makes this a very challenging problem.
    Web page classification without a page’s content is desirable when the content
    is not available at all, when a classification is needed before obtaining the
    content, or when classification speed is of utmost importance. For our experiments
    we used five different corpora comprising a total of about 3 million (URL, classification)
    pairs. We evaluated several techniques for feature generation and classification
    algorithms. The individual binary classifiers were then combined via boosting
    into metabinary classifiers. We achieve typical F-measure values between 80 and
    85, and a typical precision of around 86. The precision can be pushed further
    over 90 while maintaining a typical level of recall between 30 and 40.
article_number: '15'
article_processing_charge: No
article_type: original
author:
- first_name: Eda
  full_name: Baykan, Eda
  last_name: Baykan
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
- first_name: Ludmila
  full_name: Marian, Ludmila
  last_name: Marian
- first_name: Ingmar
  full_name: Weber, Ingmar
  last_name: Weber
citation:
  ama: Baykan E, Henzinger M, Marian L, Weber I. A comprehensive study of features
    and algorithms for URL-based topic classification. <i>ACM Transactions on the
    Web</i>. 2011;5(3). doi:<a href="https://doi.org/10.1145/1993053.1993057">10.1145/1993053.1993057</a>
  apa: Baykan, E., Henzinger, M., Marian, L., &#38; Weber, I. (2011). A comprehensive
    study of features and algorithms for URL-based topic classification. <i>ACM Transactions
    on the Web</i>. Association for Computing Machinery. <a href="https://doi.org/10.1145/1993053.1993057">https://doi.org/10.1145/1993053.1993057</a>
  chicago: Baykan, Eda, Monika Henzinger, Ludmila Marian, and Ingmar Weber. “A Comprehensive
    Study of Features and Algorithms for URL-Based Topic Classification.” <i>ACM Transactions
    on the Web</i>. Association for Computing Machinery, 2011. <a href="https://doi.org/10.1145/1993053.1993057">https://doi.org/10.1145/1993053.1993057</a>.
  ieee: E. Baykan, M. Henzinger, L. Marian, and I. Weber, “A comprehensive study of
    features and algorithms for URL-based topic classification,” <i>ACM Transactions
    on the Web</i>, vol. 5, no. 3. Association for Computing Machinery, 2011.
  ista: Baykan E, Henzinger M, Marian L, Weber I. 2011. A comprehensive study of features
    and algorithms for URL-based topic classification. ACM Transactions on the Web.
    5(3), 15.
  mla: Baykan, Eda, et al. “A Comprehensive Study of Features and Algorithms for URL-Based
    Topic Classification.” <i>ACM Transactions on the Web</i>, vol. 5, no. 3, 15,
    Association for Computing Machinery, 2011, doi:<a href="https://doi.org/10.1145/1993053.1993057">10.1145/1993053.1993057</a>.
  short: E. Baykan, M. Henzinger, L. Marian, I. Weber, ACM Transactions on the Web
    5 (2011).
date_created: 2022-07-27T13:48:11Z
date_published: 2011-07-01T00:00:00Z
date_updated: 2024-11-06T12:07:30Z
day: '01'
doi: 10.1145/1993053.1993057
extern: '1'
intvolume: '         5'
issue: '3'
keyword:
- Topic classification
- URL
- ODP
language:
- iso: eng
month: '07'
oa_version: None
publication: ACM Transactions on the Web
publication_identifier:
  eissn:
  - 1559-114X
  issn:
  - 1559-1131
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: A comprehensive study of features and algorithms for URL-based topic classification
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2011'
...
---
_id: '11760'
abstract:
- lang: eng
  text: "We study a novel load balancing problem that arises in web search engines.
    The problem is a combination of an offline assignment problem, where files need
    to be (copied and) assigned to machines, and an online load balancing problem,
    where requests ask for specific files and need to be assigned to a corresponding
    machine, whose load is increased\r\nby this. We present simple deterministic algorithms
    for this problem and exhibit an interesting trade-off between the available space
    to make file copies and the obtainable makespan. We also give non-trivial lower
    bounds for a large class of deterministic algorithms and present a randomized
    algorithm that beats these bounds with high probability."
article_processing_charge: No
article_type: original
author:
- first_name: Paul
  full_name: Dütting, Paul
  last_name: Dütting
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
- first_name: Ingmar
  full_name: Weber, Ingmar
  last_name: Weber
citation:
  ama: Dütting P, Henzinger M, Weber I. Offline file assignments for online load balancing.
    <i>Information Processing Letters</i>. 2011;111(4):178-183. doi:<a href="https://doi.org/10.1016/j.ipl.2010.11.022">10.1016/j.ipl.2010.11.022</a>
  apa: Dütting, P., Henzinger, M., &#38; Weber, I. (2011). Offline file assignments
    for online load balancing. <i>Information Processing Letters</i>. Elsevier. <a
    href="https://doi.org/10.1016/j.ipl.2010.11.022">https://doi.org/10.1016/j.ipl.2010.11.022</a>
  chicago: Dütting, Paul, Monika Henzinger, and Ingmar Weber. “Offline File Assignments
    for Online Load Balancing.” <i>Information Processing Letters</i>. Elsevier, 2011.
    <a href="https://doi.org/10.1016/j.ipl.2010.11.022">https://doi.org/10.1016/j.ipl.2010.11.022</a>.
  ieee: P. Dütting, M. Henzinger, and I. Weber, “Offline file assignments for online
    load balancing,” <i>Information Processing Letters</i>, vol. 111, no. 4. Elsevier,
    pp. 178–183, 2011.
  ista: Dütting P, Henzinger M, Weber I. 2011. Offline file assignments for online
    load balancing. Information Processing Letters. 111(4), 178–183.
  mla: Dütting, Paul, et al. “Offline File Assignments for Online Load Balancing.”
    <i>Information Processing Letters</i>, vol. 111, no. 4, Elsevier, 2011, pp. 178–83,
    doi:<a href="https://doi.org/10.1016/j.ipl.2010.11.022">10.1016/j.ipl.2010.11.022</a>.
  short: P. Dütting, M. Henzinger, I. Weber, Information Processing Letters 111 (2011)
    178–183.
date_created: 2022-08-08T11:33:03Z
date_published: 2011-01-15T00:00:00Z
date_updated: 2024-11-06T12:09:49Z
day: '15'
doi: 10.1016/j.ipl.2010.11.022
extern: '1'
intvolume: '       111'
issue: '4'
language:
- iso: eng
month: '01'
oa_version: None
page: 178-183
publication: Information Processing Letters
publication_identifier:
  issn:
  - 0020-0190
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Offline file assignments for online load balancing
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 111
year: '2011'
...
---
_id: '11796'
abstract:
- lang: eng
  text: "The design of truthful auctions that approximate the optimal expected revenue
    is a central problem in algorithmic mechanism design. 30 years after Myerson’s
    characterization of Bayesian optimal auctions in single-parameter domains [8],
    characterizing but also providing efficient mechanisms for multi-parameter domains
    still remains a very important unsolved problem. Our work improves upon recent
    results in this area, introducing new techniques for tackling the problem, while
    also combining and extending recently introduced tools.\r\n\r\nIn particular we
    give the first approximation algorithms for Bayesian auctions with multiple heterogeneous
    items when bidders have additive valuations, budget constraints and general matroid
    feasibility constraints."
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
- first_name: Angelina
  full_name: Vidali, Angelina
  last_name: Vidali
citation:
  ama: 'Henzinger M, Vidali A. Multi-parameter mechanism design under budget and matroid
    constraints. In: <i>19th Annual European Symposium on Algorithms</i>. Vol 6942.
    Springer Nature; 2011:192–202. doi:<a href="https://doi.org/10.1007/978-3-642-23719-5_17">10.1007/978-3-642-23719-5_17</a>'
  apa: 'Henzinger, M., &#38; Vidali, A. (2011). Multi-parameter mechanism design under
    budget and matroid constraints. In <i>19th Annual European Symposium on Algorithms</i>
    (Vol. 6942, pp. 192–202). Saarbrücken, Germany: Springer Nature. <a href="https://doi.org/10.1007/978-3-642-23719-5_17">https://doi.org/10.1007/978-3-642-23719-5_17</a>'
  chicago: Henzinger, Monika, and Angelina Vidali. “Multi-Parameter Mechanism Design
    under Budget and Matroid Constraints.” In <i>19th Annual European Symposium on
    Algorithms</i>, 6942:192–202. Springer Nature, 2011. <a href="https://doi.org/10.1007/978-3-642-23719-5_17">https://doi.org/10.1007/978-3-642-23719-5_17</a>.
  ieee: M. Henzinger and A. Vidali, “Multi-parameter mechanism design under budget
    and matroid constraints,” in <i>19th Annual European Symposium on Algorithms</i>,
    Saarbrücken, Germany, 2011, vol. 6942, pp. 192–202.
  ista: 'Henzinger M, Vidali A. 2011. Multi-parameter mechanism design under budget
    and matroid constraints. 19th Annual European Symposium on Algorithms. ESA: European
    Symposium on Algorithms, LNCS, vol. 6942, 192–202.'
  mla: Henzinger, Monika, and Angelina Vidali. “Multi-Parameter Mechanism Design under
    Budget and Matroid Constraints.” <i>19th Annual European Symposium on Algorithms</i>,
    vol. 6942, Springer Nature, 2011, pp. 192–202, doi:<a href="https://doi.org/10.1007/978-3-642-23719-5_17">10.1007/978-3-642-23719-5_17</a>.
  short: M. Henzinger, A. Vidali, in:, 19th Annual European Symposium on Algorithms,
    Springer Nature, 2011, pp. 192–202.
conference:
  end_date: 2011-09-09
  location: Saarbrücken, Germany
  name: 'ESA: European Symposium on Algorithms'
  start_date: 2011-09-05
date_created: 2022-08-11T11:51:39Z
date_published: 2011-09-01T00:00:00Z
date_updated: 2024-11-06T12:13:02Z
day: '01'
doi: 10.1007/978-3-642-23719-5_17
extern: '1'
intvolume: '      6942'
language:
- iso: eng
month: '09'
oa_version: None
page: 192–202
publication: 19th Annual European Symposium on Algorithms
publication_identifier:
  isbn:
  - '9783642237188'
  issn:
  - 1611-3349
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Multi-parameter mechanism design under budget and matroid constraints
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6942
year: '2011'
...
---
_id: '11864'
abstract:
- lang: eng
  text: Auctions are widely used on the Web. Applications range from internet advertising
    to platforms such as eBay. In most of these applications the auctions in use are
    single/multi-item auctions with unit demand. The main drawback of standard mechanisms
    for this type of auctions, such as VCG and GSP, is the limited expressiveness
    that they offer to the bidders. The General Auction Mechanism (GAM) of [1] is
    taking a first step towards addressing the problem of limited expressiveness by
    computing a bidder optimal, envy free outcome for linear utility functions with
    identical slopes and a single discontinuity per bidder-item pair. We show that
    in many practical situations this does not suffice to adequately model the preferences
    of the bidders, and we overcome this problem by presenting the first mechanism
    for piece-wise linear utility functions with non-identical slopes and multiple
    discontinuities. Our mechanism runs in polynomial time. Like GAM it is incentive
    compatible for inputs that fulfill a certain non-degeneracy requirement, but our
    requirement is more general than the requirement of GAM. For discontinuous utility
    functions that are non-degenerate as well as for continuous utility functions
    the outcome of our mechanism is a competitive equilibrium. We also show how our
    mechanism can be used to compute approximately bidder optimal, envy free outcomes
    for a general class of continuous utility functions via piece-wise linear approximation.
    Finally, we prove hardness results for even more expressive settings.
article_processing_charge: No
author:
- first_name: Paul
  full_name: Dütting, Paul
  last_name: Dütting
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
- first_name: Ingmar
  full_name: Weber, Ingmar
  last_name: Weber
citation:
  ama: 'Dütting P, Henzinger M, Weber I. An expressive mechanism for auctions on the
    web. In: <i>Proceedings of the 20th International Conference on World Wide Web</i>.
    Association for Computing Machinery; 2011:127-136. doi:<a href="https://doi.org/10.1145/1963405.1963427">10.1145/1963405.1963427</a>'
  apa: 'Dütting, P., Henzinger, M., &#38; Weber, I. (2011). An expressive mechanism
    for auctions on the web. In <i>Proceedings of the 20th international conference
    on World wide web</i> (pp. 127–136). Hyderabad, India: Association for Computing
    Machinery. <a href="https://doi.org/10.1145/1963405.1963427">https://doi.org/10.1145/1963405.1963427</a>'
  chicago: Dütting, Paul, Monika Henzinger, and Ingmar Weber. “An Expressive Mechanism
    for Auctions on the Web.” In <i>Proceedings of the 20th International Conference
    on World Wide Web</i>, 127–36. Association for Computing Machinery, 2011. <a href="https://doi.org/10.1145/1963405.1963427">https://doi.org/10.1145/1963405.1963427</a>.
  ieee: P. Dütting, M. Henzinger, and I. Weber, “An expressive mechanism for auctions
    on the web,” in <i>Proceedings of the 20th international conference on World wide
    web</i>, Hyderabad, India, 2011, pp. 127–136.
  ista: 'Dütting P, Henzinger M, Weber I. 2011. An expressive mechanism for auctions
    on the web. Proceedings of the 20th international conference on World wide web.
    WWW: International Conference on World Wide Web, 127–136.'
  mla: Dütting, Paul, et al. “An Expressive Mechanism for Auctions on the Web.” <i>Proceedings
    of the 20th International Conference on World Wide Web</i>, Association for Computing
    Machinery, 2011, pp. 127–36, doi:<a href="https://doi.org/10.1145/1963405.1963427">10.1145/1963405.1963427</a>.
  short: P. Dütting, M. Henzinger, I. Weber, in:, Proceedings of the 20th International
    Conference on World Wide Web, Association for Computing Machinery, 2011, pp. 127–136.
conference:
  end_date: 2011-04-01
  location: Hyderabad, India
  name: 'WWW: International Conference on World Wide Web'
  start_date: 2011-03-28
date_created: 2022-08-16T09:05:34Z
date_published: 2011-04-01T00:00:00Z
date_updated: 2024-11-06T12:19:04Z
day: '01'
doi: 10.1145/1963405.1963427
extern: '1'
language:
- iso: eng
month: '04'
oa_version: None
page: 127 - 136
publication: Proceedings of the 20th international conference on World wide web
publication_identifier:
  isbn:
  - 978-145030632-4
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: An expressive mechanism for auctions on the web
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '2199'
abstract:
- lang: eng
  text: By invoking supersymmetry, we found a condition under which the Stark-effect
    problem for a polar and polarizable molecule subject to nonresonant electric fields
    becomes exactly solvable for the family of stretched states. The analytic expressions
    for the wave function and eigenenergy and other expectation values allow one to
    readily reverse-engineer the problem of finding the values of the interaction
    parameters required for creating quantum states with preordained characteristics.
    The method also allows the construction of families of isospectral potentials,
    realizable with combined fields.
acknowledgement: 'ARO '
author:
- first_name: Mikhail
  full_name: Mikhail Lemeshko
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Mustafa
  full_name: Mustafa, Mustafa K
  last_name: Mustafa
- first_name: Sabre
  full_name: Kais, Sabre
  last_name: Kais
- first_name: Břetislav
  full_name: Friedrich, Břetislav
  last_name: Friedrich
citation:
  ama: Lemeshko M, Mustafa M, Kais S, Friedrich B. Supersymmetric factorization yields
    exact solutions to the molecular Stark-effect problem for &#38;quot;stretched&#38;quot;
    states. <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>. 2011;83(4).
    doi:<a href="https://doi.org/10.1103/PhysRevA.83.043415">10.1103/PhysRevA.83.043415</a>
  apa: Lemeshko, M., Mustafa, M., Kais, S., &#38; Friedrich, B. (2011). Supersymmetric
    factorization yields exact solutions to the molecular Stark-effect problem for
    &#38;quot;stretched&#38;quot; states. <i>Physical Review A - Atomic, Molecular,
    and Optical Physics</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevA.83.043415">https://doi.org/10.1103/PhysRevA.83.043415</a>
  chicago: Lemeshko, Mikhail, Mustafa Mustafa, Sabre Kais, and Břetislav Friedrich.
    “Supersymmetric Factorization Yields Exact Solutions to the Molecular Stark-Effect
    Problem for &#38;quot;Stretched&#38;quot; States.” <i>Physical Review A - Atomic,
    Molecular, and Optical Physics</i>. American Physical Society, 2011. <a href="https://doi.org/10.1103/PhysRevA.83.043415">https://doi.org/10.1103/PhysRevA.83.043415</a>.
  ieee: M. Lemeshko, M. Mustafa, S. Kais, and B. Friedrich, “Supersymmetric factorization
    yields exact solutions to the molecular Stark-effect problem for &#38;quot;stretched&#38;quot;
    states,” <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>, vol.
    83, no. 4. American Physical Society, 2011.
  ista: Lemeshko M, Mustafa M, Kais S, Friedrich B. 2011. Supersymmetric factorization
    yields exact solutions to the molecular Stark-effect problem for &#38;quot;stretched&#38;quot;
    states. Physical Review A - Atomic, Molecular, and Optical Physics. 83(4).
  mla: Lemeshko, Mikhail, et al. “Supersymmetric Factorization Yields Exact Solutions
    to the Molecular Stark-Effect Problem for &#38;quot;Stretched&#38;quot; States.”
    <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>, vol. 83, no.
    4, American Physical Society, 2011, doi:<a href="https://doi.org/10.1103/PhysRevA.83.043415">10.1103/PhysRevA.83.043415</a>.
  short: M. Lemeshko, M. Mustafa, S. Kais, B. Friedrich, Physical Review A - Atomic,
    Molecular, and Optical Physics 83 (2011).
date_created: 2018-12-11T11:56:17Z
date_published: 2011-04-25T00:00:00Z
date_updated: 2021-01-12T06:55:56Z
day: '25'
doi: 10.1103/PhysRevA.83.043415
extern: 1
intvolume: '        83'
issue: '4'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1105.5262
month: '04'
oa: 1
publication: Physical Review A - Atomic, Molecular, and Optical Physics
publication_status: published
publisher: American Physical Society
publist_id: '4776'
quality_controlled: 0
status: public
title: Supersymmetric factorization yields exact solutions to the molecular Stark-effect
  problem for &quot;stretched&quot; states
type: journal_article
volume: 83
year: '2011'
...
---
_id: '2200'
abstract:
- lang: eng
  text: We made use of supersymmetric (SUSY) quantum mechanics to find the condition
    under which the Stark effect problem for a polar and polarizable closed-shell
    diatomic molecule subjected to collinear electrostatic and nonresonant radiative
    fields becomes exactly solvable. The condition Δω = ω2/4(m+1)2 connects values
    of the dimensionless parameters ω and Δω that characterize the strengths of the
    permanent and induced dipole interactions of the molecule with the respective
    fields. The exact solutions are obtained for the \J̃ = m, m; ω, Δω) family of
    'stretched' states. The field-free and strong-field limits of the combined-fields
    problem were found to exhibit supersymmetry and shape invariance, which is indeed
    the reason why they are analytically solvable. By making use of the analytic form
    of the \J̃ = m,m; ω, Δω) wavefunctions, we obtained simple formulae for the expectation
    values of the space-fixed electric dipole moment, the alignment cosine and the
    angular momentum squared, and derived a 'sum rule' that combines the above expectation
    values into a formula for the eigenenergy. The analytic expressions for the characteristics
    of the strongly oriented and aligned states provide direct access to the values
    of the interaction parameters required for creating such states in the laboratory.
acknowledgement: SK thanks the ARO for financial support
article_processing_charge: No
author:
- first_name: Mikhail
  full_name: Lemeshko, Mikhail
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Mustafa
  full_name: Mustafa, Mustafa
  last_name: Mustafa
- first_name: Sabre
  full_name: Kais, Sabre
  last_name: Kais
- first_name: Břetislav
  full_name: Friedrich, Břetislav
  last_name: Friedrich
citation:
  ama: Lemeshko M, Mustafa M, Kais S, Friedrich B. Supersymmetry identifies molecular
    Stark states whose eigenproperties can be obtained analytically. <i>New Journal
    of Physics</i>. 2011;13. doi:<a href="https://doi.org/10.1088/1367-2630/13/6/063036">10.1088/1367-2630/13/6/063036</a>
  apa: Lemeshko, M., Mustafa, M., Kais, S., &#38; Friedrich, B. (2011). Supersymmetry
    identifies molecular Stark states whose eigenproperties can be obtained analytically.
    <i>New Journal of Physics</i>. IOP Publishing Ltd. <a href="https://doi.org/10.1088/1367-2630/13/6/063036">https://doi.org/10.1088/1367-2630/13/6/063036</a>
  chicago: Lemeshko, Mikhail, Mustafa Mustafa, Sabre Kais, and Břetislav Friedrich.
    “Supersymmetry Identifies Molecular Stark States Whose Eigenproperties Can Be
    Obtained Analytically.” <i>New Journal of Physics</i>. IOP Publishing Ltd., 2011.
    <a href="https://doi.org/10.1088/1367-2630/13/6/063036">https://doi.org/10.1088/1367-2630/13/6/063036</a>.
  ieee: M. Lemeshko, M. Mustafa, S. Kais, and B. Friedrich, “Supersymmetry identifies
    molecular Stark states whose eigenproperties can be obtained analytically,” <i>New
    Journal of Physics</i>, vol. 13. IOP Publishing Ltd., 2011.
  ista: Lemeshko M, Mustafa M, Kais S, Friedrich B. 2011. Supersymmetry identifies
    molecular Stark states whose eigenproperties can be obtained analytically. New
    Journal of Physics. 13.
  mla: Lemeshko, Mikhail, et al. “Supersymmetry Identifies Molecular Stark States
    Whose Eigenproperties Can Be Obtained Analytically.” <i>New Journal of Physics</i>,
    vol. 13, IOP Publishing Ltd., 2011, doi:<a href="https://doi.org/10.1088/1367-2630/13/6/063036">10.1088/1367-2630/13/6/063036</a>.
  short: M. Lemeshko, M. Mustafa, S. Kais, B. Friedrich, New Journal of Physics 13
    (2011).
date_created: 2018-12-11T11:56:17Z
date_published: 2011-06-20T00:00:00Z
date_updated: 2026-06-18T18:32:53Z
day: '20'
ddc:
- '530'
doi: 10.1088/1367-2630/13/6/063036
extern: '1'
intvolume: '        13'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: 'http://arxiv.org/abs/1106.4402 '
month: '06'
oa: 1
oa_version: None
publication: New Journal of Physics
publication_status: published
publisher: IOP Publishing Ltd.
publist_id: '4774'
status: public
title: Supersymmetry identifies molecular Stark states whose eigenproperties can be
  obtained analytically
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2011'
...
---
OA_place: repository
OA_type: green
_id: '22040'
abstract:
- lang: eng
  text: We consider the defocusing nonlinear wave equation (mathematical formular)
    in the energy-supercritical regime p > 4. For even values of the power p, we show
    that blowup (or failure to scatter) must be accompanied by blowup of the critical
    Sobolev norm. An equivalent formulation is that solutions with bounded critical
    Sobolev norm are global and scatter. The impetus to consider this problem comes
    from recent work of Kenig and Merle who treated the case of spherically-symmetric
    solutions.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Rowan
  full_name: Killip, Rowan
  last_name: Killip
- first_name: Monica
  full_name: Visan, Monica
  id: 056daca0-b8d1-11f0-964f-f91054abf8ca
  last_name: Visan
citation:
  ama: Killip R, Vişan M. The defocusing energy-supercritical nonlinear wave equation
    in three space dimensions. <i>Transactions of the American Mathematical Society</i>.
    2011;363(7):3893-3893. doi:<a href="https://doi.org/10.1090/s0002-9947-2011-05400-0">10.1090/s0002-9947-2011-05400-0</a>
  apa: Killip, R., &#38; Vişan, M. (2011). The defocusing energy-supercritical nonlinear
    wave equation in three space dimensions. <i>Transactions of the American Mathematical
    Society</i>. American Mathematical Society. <a href="https://doi.org/10.1090/s0002-9947-2011-05400-0">https://doi.org/10.1090/s0002-9947-2011-05400-0</a>
  chicago: Killip, Rowan, and Monica Vişan. “The Defocusing Energy-Supercritical Nonlinear
    Wave Equation in Three Space Dimensions.” <i>Transactions of the American Mathematical
    Society</i>. American Mathematical Society, 2011. <a href="https://doi.org/10.1090/s0002-9947-2011-05400-0">https://doi.org/10.1090/s0002-9947-2011-05400-0</a>.
  ieee: R. Killip and M. Vişan, “The defocusing energy-supercritical nonlinear wave
    equation in three space dimensions,” <i>Transactions of the American Mathematical
    Society</i>, vol. 363, no. 7. American Mathematical Society, pp. 3893–3893, 2011.
  ista: Killip R, Vişan M. 2011. The defocusing energy-supercritical nonlinear wave
    equation in three space dimensions. Transactions of the American Mathematical
    Society. 363(7), 3893–3893.
  mla: Killip, Rowan, and Monica Vişan. “The Defocusing Energy-Supercritical Nonlinear
    Wave Equation in Three Space Dimensions.” <i>Transactions of the American Mathematical
    Society</i>, vol. 363, no. 7, American Mathematical Society, 2011, pp. 3893–3893,
    doi:<a href="https://doi.org/10.1090/s0002-9947-2011-05400-0">10.1090/s0002-9947-2011-05400-0</a>.
  short: R. Killip, M. Vişan, Transactions of the American Mathematical Society 363
    (2011) 3893–3893.
das_tickbox: '1'
date_created: 2026-06-19T07:45:31Z
date_published: 2011-01-28T00:00:00Z
date_updated: 2026-06-22T13:18:01Z
day: '28'
doi: 10.1090/s0002-9947-2011-05400-0
extern: '1'
external_id:
  arxiv:
  - '1001.1761'
intvolume: '       363'
issue: '7'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.1001.1761
month: '01'
oa: 1
oa_version: Preprint
page: 3893-3893
publication: Transactions of the American Mathematical Society
publication_identifier:
  eissn:
  - 1088-6850
  issn:
  - 0002-9947
publication_status: published
publisher: American Mathematical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: The defocusing energy-supercritical nonlinear wave equation in three space
  dimensions
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 363
year: '2011'
...
---
_id: '2312'
abstract:
- lang: eng
  text: Soon, the genetic basis of most human Mendelian diseases will be solved. The
    next challenge will be to leverage this information to uncover basic mechanisms
    of disease and develop new therapies. To understand how this transformation is
    already beginning to unfold, we focus on the ciliopathies, a class of multi-organ
    diseases caused by disruption of the primary cilium. Through a convergence of
    data involving mutant gene discovery, proteomics, and cell biology, more than
    a dozen phenotypically distinguishable conditions are now united as ciliopathies.
    Sitting at the interface between simple and complex genetic conditions, these
    diseases provide clues to the future direction of human genetics.
author:
- first_name: Gaia
  full_name: Gaia Novarino
  id: 3E57A680-F248-11E8-B48F-1D18A9856A87
  last_name: Novarino
  orcid: 0000-0002-7673-7178
- first_name: Naiara
  full_name: Akizu, Naiara
  last_name: Akizu
- first_name: Joseph
  full_name: Gleeson, Joseph G
  last_name: Gleeson
citation:
  ama: 'Novarino G, Akizu N, Gleeson J. Modeling human disease in humans: The ciliopathies.
    <i>Cell</i>. 2011;147(1):70-79. doi:<a href="https://doi.org/10.1016/j.cell.2011.09.014">10.1016/j.cell.2011.09.014</a>'
  apa: 'Novarino, G., Akizu, N., &#38; Gleeson, J. (2011). Modeling human disease
    in humans: The ciliopathies. <i>Cell</i>. Cell Press. <a href="https://doi.org/10.1016/j.cell.2011.09.014">https://doi.org/10.1016/j.cell.2011.09.014</a>'
  chicago: 'Novarino, Gaia, Naiara Akizu, and Joseph Gleeson. “Modeling Human Disease
    in Humans: The Ciliopathies.” <i>Cell</i>. Cell Press, 2011. <a href="https://doi.org/10.1016/j.cell.2011.09.014">https://doi.org/10.1016/j.cell.2011.09.014</a>.'
  ieee: 'G. Novarino, N. Akizu, and J. Gleeson, “Modeling human disease in humans:
    The ciliopathies,” <i>Cell</i>, vol. 147, no. 1. Cell Press, pp. 70–79, 2011.'
  ista: 'Novarino G, Akizu N, Gleeson J. 2011. Modeling human disease in humans: The
    ciliopathies. Cell. 147(1), 70–79.'
  mla: 'Novarino, Gaia, et al. “Modeling Human Disease in Humans: The Ciliopathies.”
    <i>Cell</i>, vol. 147, no. 1, Cell Press, 2011, pp. 70–79, doi:<a href="https://doi.org/10.1016/j.cell.2011.09.014">10.1016/j.cell.2011.09.014</a>.'
  short: G. Novarino, N. Akizu, J. Gleeson, Cell 147 (2011) 70–79.
date_created: 2018-12-11T11:56:55Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2019-04-26T07:22:10Z
day: '01'
doi: 10.1016/j.cell.2011.09.014
extern: 1
intvolume: '       147'
issue: '1'
month: '01'
page: 70 - 79
publication: Cell
publication_status: published
publisher: Cell Press
publist_id: '4615'
quality_controlled: 0
status: public
title: 'Modeling human disease in humans: The ciliopathies'
type: review
volume: 147
year: '2011'
...
