---
_id: '1985'
abstract:
- lang: eng
  text: |2-


    In Escherichia coli, the pole-to-pole oscillation of the Min proteins directs septum formation to midcell, which is required for symmetric cell division. In vitro, protein waves emerge from the self-organization of MinD, a membrane-binding ATPase, and its activator MinE. For wave propagation, the proteins need to cycle through states of collective membrane binding and unbinding. Although MinD presumably undergoes cooperative membrane attachment, it is unclear how synchronous detachment is coordinated. We used confocal and single-molecule microscopy to elucidate the order of events during Min wave propagation. We propose that protein detachment at the rear of the wave, and the formation of the E-ring, are accomplished by two complementary processes: first, local accumulation of MinE due to rapid rebinding, leading to dynamic instability; and second, a structural change induced by membrane-interaction of MinE in an equimolar MinD-MinE (MinDE) complex, which supports the robustness of pattern formation.
acknowledgement: This work was also supported by the Max Planck Society (M.L., E.F.-F.,
  P.S.).
author:
- first_name: Martin
  full_name: Martin Loose
  id: 462D4284-F248-11E8-B48F-1D18A9856A87
  last_name: Loose
  orcid: 0000-0001-7309-9724
- first_name: Elisabeth
  full_name: Fischer-Friedrich, Elisabeth
  last_name: Fischer Friedrich
- first_name: Christoph
  full_name: Herold, Christoph
  last_name: Herold
- first_name: Karsten
  full_name: Kruse, Karsten
  last_name: Kruse
- first_name: Petra
  full_name: 'Schwille, Petra '
  last_name: Schwille
citation:
  ama: Loose M, Fischer Friedrich E, Herold C, Kruse K, Schwille P. Min protein patterns
    emerge from rapid rebinding and membrane interaction of MinE. <i>Nature Structural
    and Molecular Biology</i>. 2011;18(5):577-583. doi:<a href="https://doi.org/10.1038/nsmb.2037">10.1038/nsmb.2037</a>
  apa: Loose, M., Fischer Friedrich, E., Herold, C., Kruse, K., &#38; Schwille, P.
    (2011). Min protein patterns emerge from rapid rebinding and membrane interaction
    of MinE. <i>Nature Structural and Molecular Biology</i>. Nature Publishing Group.
    <a href="https://doi.org/10.1038/nsmb.2037">https://doi.org/10.1038/nsmb.2037</a>
  chicago: Loose, Martin, Elisabeth Fischer Friedrich, Christoph Herold, Karsten Kruse,
    and Petra Schwille. “Min Protein Patterns Emerge from Rapid Rebinding and Membrane
    Interaction of MinE.” <i>Nature Structural and Molecular Biology</i>. Nature Publishing
    Group, 2011. <a href="https://doi.org/10.1038/nsmb.2037">https://doi.org/10.1038/nsmb.2037</a>.
  ieee: M. Loose, E. Fischer Friedrich, C. Herold, K. Kruse, and P. Schwille, “Min
    protein patterns emerge from rapid rebinding and membrane interaction of MinE,”
    <i>Nature Structural and Molecular Biology</i>, vol. 18, no. 5. Nature Publishing
    Group, pp. 577–583, 2011.
  ista: Loose M, Fischer Friedrich E, Herold C, Kruse K, Schwille P. 2011. Min protein
    patterns emerge from rapid rebinding and membrane interaction of MinE. Nature
    Structural and Molecular Biology. 18(5), 577–583.
  mla: Loose, Martin, et al. “Min Protein Patterns Emerge from Rapid Rebinding and
    Membrane Interaction of MinE.” <i>Nature Structural and Molecular Biology</i>,
    vol. 18, no. 5, Nature Publishing Group, 2011, pp. 577–83, doi:<a href="https://doi.org/10.1038/nsmb.2037">10.1038/nsmb.2037</a>.
  short: M. Loose, E. Fischer Friedrich, C. Herold, K. Kruse, P. Schwille, Nature
    Structural and Molecular Biology 18 (2011) 577–583.
date_created: 2018-12-11T11:55:03Z
date_published: 2011-05-01T00:00:00Z
date_updated: 2021-01-12T06:54:31Z
day: '01'
doi: 10.1038/nsmb.2037
extern: 1
intvolume: '        18'
issue: '5'
month: '05'
page: 577 - 583
publication: Nature Structural and Molecular Biology
publication_status: published
publisher: Nature Publishing Group
publist_id: '5098'
quality_controlled: 0
status: public
title: Min protein patterns emerge from rapid rebinding and membrane interaction of
  MinE
type: journal_article
volume: 18
year: '2011'
...
---
_id: '1986'
abstract:
- lang: eng
  text: One of the most fundamental features of biological systems is probably their
    ability to self-organize in space and time on different scales. Despite many elaborate
    theoretical models of how molecular self-organization can come about, only a few
    experimental systems of biological origin have so far been rigorously described,
    due mostly to their inherent complexity. The most promising strategy of modern
    biophysics is thus to identify minimal biological systems showing self-organized
    emergent behavior. One of the best-understood examples of protein self-organization,
    which has recently been successfully reconstituted in vitro, is represented by
    the oscillations of the Min proteins in Escherichia coli. In this review, we summarize
    the current understanding of the mechanism of Min protein self-organization in
    vivo and in vitro. We discuss the potential of the Min oscillations to sense the
    geometry of the cell and suggest that spontaneous protein waves could be a general
    means of intracellular organization. We hypothesize that cooperative membrane
    binding and unbinding, e.g., as an energy-dependent switch, may act as an important
    regulatory mechanism for protein oscillations and pattern formation in the cell.
author:
- first_name: Martin
  full_name: Martin Loose
  id: 462D4284-F248-11E8-B48F-1D18A9856A87
  last_name: Loose
  orcid: 0000-0001-7309-9724
- first_name: Karsten
  full_name: Kruse, Karsten
  last_name: Kruse
- first_name: Petra
  full_name: 'Schwille, Petra '
  last_name: Schwille
citation:
  ama: 'Loose M, Kruse K, Schwille P. Protein self-organization: Lessons from the
    min system. <i>Annual Review of Biophysics</i>. 2011;40(1):315-336. doi:<a href="https://doi.org/10.1146/annurev-biophys-042910-155332">10.1146/annurev-biophys-042910-155332</a>'
  apa: 'Loose, M., Kruse, K., &#38; Schwille, P. (2011). Protein self-organization:
    Lessons from the min system. <i>Annual Review of Biophysics</i>. Annual Reviews.
    <a href="https://doi.org/10.1146/annurev-biophys-042910-155332">https://doi.org/10.1146/annurev-biophys-042910-155332</a>'
  chicago: 'Loose, Martin, Karsten Kruse, and Petra Schwille. “Protein Self-Organization:
    Lessons from the Min System.” <i>Annual Review of Biophysics</i>. Annual Reviews,
    2011. <a href="https://doi.org/10.1146/annurev-biophys-042910-155332">https://doi.org/10.1146/annurev-biophys-042910-155332</a>.'
  ieee: 'M. Loose, K. Kruse, and P. Schwille, “Protein self-organization: Lessons
    from the min system,” <i>Annual Review of Biophysics</i>, vol. 40, no. 1. Annual
    Reviews, pp. 315–336, 2011.'
  ista: 'Loose M, Kruse K, Schwille P. 2011. Protein self-organization: Lessons from
    the min system. Annual Review of Biophysics. 40(1), 315–336.'
  mla: 'Loose, Martin, et al. “Protein Self-Organization: Lessons from the Min System.”
    <i>Annual Review of Biophysics</i>, vol. 40, no. 1, Annual Reviews, 2011, pp.
    315–36, doi:<a href="https://doi.org/10.1146/annurev-biophys-042910-155332">10.1146/annurev-biophys-042910-155332</a>.'
  short: M. Loose, K. Kruse, P. Schwille, Annual Review of Biophysics 40 (2011) 315–336.
date_created: 2018-12-11T11:55:04Z
date_published: 2011-06-09T00:00:00Z
date_updated: 2021-01-12T06:54:31Z
day: '09'
doi: 10.1146/annurev-biophys-042910-155332
extern: 1
intvolume: '        40'
issue: '1'
month: '06'
page: 315 - 336
publication: Annual Review of Biophysics
publication_status: published
publisher: Annual Reviews
publist_id: '5097'
quality_controlled: 0
status: public
title: 'Protein self-organization: Lessons from the min system'
type: journal_article
volume: 40
year: '2011'
...
---
_id: '2072'
abstract:
- lang: eng
  text: Many species have morphologically and genetically differentiated sex chromosomes,
    such as the XY pair of mammals. Y chromosomes are often highly degenerated and
    carry few functional genes, so that XY males have only one copy of most Xlinked
    genes (whereas females have two). As a result, chromosome-wide mechanisms of dosage
    compensation, such as the mammalian X-inactivation, often evolve to reestablish
    expression balance. A similar phenomenon is expected in femaleheterogametic species,
    where ZW females should suffer from imbalances due to W-chromosome degeneration.
    However, no global dosage compensation mechanisms have been detected in the two
    independent ZW systems that have been studied systematically (birds and silkworm),
    leading to the suggestion that lack of global dosage compensation may be a general
    feature of female-heterogametic species. However, analyses of other independently
    evolved ZW systems are required to test if this is the case. In this study, we
    use published genomic and expression data to test for the presence of global dosage
    compensation in Schistosoma mansoni, a trematode parasite that causes schistosomiasis
    in humans. We find that Z-linked expression is reduced relative to autosomal expression
    in females but not males, consistent with incomplete or localized dosage compensation.
    This gives further support to the theory that female-heterogametic species may
    not require global mechanisms of dosage compensation.
author:
- first_name: Beatriz
  full_name: Vicoso, Beatriz
  id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87
  last_name: Vicoso
  orcid: 0000-0002-4579-8306
- first_name: Doris
  full_name: Bachtrog, Doris
  last_name: Bachtrog
citation:
  ama: Vicoso B, Bachtrog D. Lack of global dosage compensation in Schistosoma mansoni,
    a female-heterogametic parasite. <i>Genome Biology and Evolution</i>. 2011;3(1):230-235.
    doi:<a href="https://doi.org/10.1093/gbe/evr010">10.1093/gbe/evr010</a>
  apa: Vicoso, B., &#38; Bachtrog, D. (2011). Lack of global dosage compensation in
    Schistosoma mansoni, a female-heterogametic parasite. <i>Genome Biology and Evolution</i>.
    Oxford University Press. <a href="https://doi.org/10.1093/gbe/evr010">https://doi.org/10.1093/gbe/evr010</a>
  chicago: Vicoso, Beatriz, and Doris Bachtrog. “Lack of Global Dosage Compensation
    in Schistosoma Mansoni, a Female-Heterogametic Parasite.” <i>Genome Biology and
    Evolution</i>. Oxford University Press, 2011. <a href="https://doi.org/10.1093/gbe/evr010">https://doi.org/10.1093/gbe/evr010</a>.
  ieee: B. Vicoso and D. Bachtrog, “Lack of global dosage compensation in Schistosoma
    mansoni, a female-heterogametic parasite,” <i>Genome Biology and Evolution</i>,
    vol. 3, no. 1. Oxford University Press, pp. 230–235, 2011.
  ista: Vicoso B, Bachtrog D. 2011. Lack of global dosage compensation in Schistosoma
    mansoni, a female-heterogametic parasite. Genome Biology and Evolution. 3(1),
    230–235.
  mla: Vicoso, Beatriz, and Doris Bachtrog. “Lack of Global Dosage Compensation in
    Schistosoma Mansoni, a Female-Heterogametic Parasite.” <i>Genome Biology and Evolution</i>,
    vol. 3, no. 1, Oxford University Press, 2011, pp. 230–35, doi:<a href="https://doi.org/10.1093/gbe/evr010">10.1093/gbe/evr010</a>.
  short: B. Vicoso, D. Bachtrog, Genome Biology and Evolution 3 (2011) 230–235.
date_created: 2018-12-11T11:55:33Z
date_published: 2011-02-11T00:00:00Z
date_updated: 2021-01-12T06:55:08Z
day: '11'
ddc:
- '570'
doi: 10.1093/gbe/evr010
extern: '1'
file:
- access_level: open_access
  checksum: 7855c134436e4f6a13d63b6606d7e8dd
  content_type: application/pdf
  creator: dernst
  date_created: 2019-05-10T07:41:28Z
  date_updated: 2020-07-14T12:45:27Z
  file_id: '6395'
  file_name: 2011_GBE_Vicoso.pdf
  file_size: 212547
  relation: main_file
file_date_updated: 2020-07-14T12:45:27Z
has_accepted_license: '1'
intvolume: '         3'
issue: '1'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc/4.0/
month: '02'
oa: 1
oa_version: Published Version
page: 230 - 235
publication: Genome Biology and Evolution
publication_status: published
publisher: Oxford University Press
publist_id: '4966'
quality_controlled: '1'
status: public
title: Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic
  parasite
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 3
year: '2011'
...
---
_id: '10389'
abstract:
- lang: eng
  text: We perform numerical simulations to study self-assembly of nanoparticles mediated
    by an elastic planar surface. We show how the nontrivial elastic response to deformations
    of these surfaces leads to anisotropic interactions between the particles resulting
    in aggregates having different geometrical features. The morphology of the patterns
    can be controlled by the mechanical properties of the surface and the strength
    of the particle adhesion. We use simple scaling arguments to understand the formation
    of the different structures, and we show how the adhering particles can cause
    the underlying elastic substrate to wrinkle if two of its opposite edges are clamped.
    Finally, we discuss the implications of our results and suggest how elastic surfaces
    could be used in nanofabrication.
acknowledgement: This work was supported by the National Science Foundation under
  Career Grant No. DMR-0846426. We thank Josep C. Pàmies and William L. Miller for
  helpful discussions.
article_number: '8324'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Anđela
  full_name: Šarić, Anđela
  id: bf63d406-f056-11eb-b41d-f263a6566d8b
  last_name: Šarić
  orcid: 0000-0002-7854-2139
- first_name: Angelo
  full_name: Cacciuto, Angelo
  last_name: Cacciuto
citation:
  ama: Šarić A, Cacciuto A. Soft elastic surfaces as a platform for particle self-assembly.
    <i>Soft Matter</i>. 2011;7(18). doi:<a href="https://doi.org/10.1039/c1sm05773a">10.1039/c1sm05773a</a>
  apa: Šarić, A., &#38; Cacciuto, A. (2011). Soft elastic surfaces as a platform for
    particle self-assembly. <i>Soft Matter</i>. Royal Society of Chemistry. <a href="https://doi.org/10.1039/c1sm05773a">https://doi.org/10.1039/c1sm05773a</a>
  chicago: Šarić, Anđela, and Angelo Cacciuto. “Soft Elastic Surfaces as a Platform
    for Particle Self-Assembly.” <i>Soft Matter</i>. Royal Society of Chemistry, 2011.
    <a href="https://doi.org/10.1039/c1sm05773a">https://doi.org/10.1039/c1sm05773a</a>.
  ieee: A. Šarić and A. Cacciuto, “Soft elastic surfaces as a platform for particle
    self-assembly,” <i>Soft Matter</i>, vol. 7, no. 18. Royal Society of Chemistry,
    2011.
  ista: Šarić A, Cacciuto A. 2011. Soft elastic surfaces as a platform for particle
    self-assembly. Soft Matter. 7(18), 8324.
  mla: Šarić, Anđela, and Angelo Cacciuto. “Soft Elastic Surfaces as a Platform for
    Particle Self-Assembly.” <i>Soft Matter</i>, vol. 7, no. 18, 8324, Royal Society
    of Chemistry, 2011, doi:<a href="https://doi.org/10.1039/c1sm05773a">10.1039/c1sm05773a</a>.
  short: A. Šarić, A. Cacciuto, Soft Matter 7 (2011).
date_created: 2021-11-29T14:33:18Z
date_published: 2011-08-08T00:00:00Z
date_updated: 2021-11-29T15:12:10Z
day: '08'
doi: 10.1039/c1sm05773a
extern: '1'
external_id:
  arxiv:
  - '1106.2995'
intvolume: '         7'
issue: '18'
keyword:
- condensed matter physics
- general chemistry
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1106.2995
month: '08'
oa: 1
oa_version: Preprint
publication: Soft Matter
publication_identifier:
  eissn:
  - 1744-6848
  issn:
  - 1744-683X
publication_status: published
publisher: Royal Society of Chemistry
quality_controlled: '1'
scopus_import: '1'
status: public
title: Soft elastic surfaces as a platform for particle self-assembly
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 7
year: '2011'
...
---
_id: '1048'
abstract:
- lang: eng
  text: We produce an ultracold and dense sample of rovibronic ground state Cs 2 molecules
    close to the regime of quantum degeneracy, in a single hyperfine level, in the
    presence of an optical lattice. The molecules are individually trapped, in the
    motional ground state of an optical lattice well, with a lifetime of 8 s. For
    preparation, we start with a zero-temperature atomic Mott-insulator state with
    optimized double-site occupancy and efficiently associate weakly-bound dimer molecules
    on a Feshbach resonance. Despite extremely weak Franck-Condon wavefunction overlap,
    the molecules are subsequently transferred with &gt;50% efficiency to the rovibronic
    ground state by a stimulated four-photon process. Our results present a crucial
    step towards the generation of Bose-Einstein condensates of ground-state molecules
    and, when suitably generalized to polar heteronuclear molecules such as RbCs,
    the realization of dipolar many-body quantum-gas phases in periodic potentials.
acknowledgement: "We thank H. Ritsch, N. Bouloufa, O. Dulieu, J. Aldegunde, J. M.
  Hutson, H. Salami, T. Bergeman,  S. D ̈urr, and K. Bergmann for valuable discussions
  and H. Telle, H. Schnatz, B. Lipphardt, and J. Alnis for sharing technical expertise.
  We are indebted to R. Grimm for generous support. We gratefully acknowledge funding
  by the Austrian Ministry of Science and\r\nResearch (Bundesministerium f ̈ur Wissenschaft
  und Forschung) and the Austrian Science Fund\r\n(Fonds zur F ̈orderung der wissenschaftlichen
  Forschung) in the form of a START prize grant\r\nand by the European Science Foundation
  within the framework of the EuroQUASAR collective\r\nresearch project QuDeGPM (Project
  I 153-N16) and within the framework of the EuroQUAM\r\ncollective research project
  QuDipMol (Project I 124-N16).  R.H. was supported by a Marie Curie\r\nInternational
  Incoming Fellowship within the 7th European Community Framework Programme"
article_processing_charge: No
arxiv: 1
author:
- first_name: Hanns
  full_name: Nägerl, Hanns
  last_name: Nägerl
- first_name: Manfred
  full_name: Mark, Manfred
  last_name: Mark
- first_name: Elmar
  full_name: Haller, Elmar
  last_name: Haller
- first_name: Mattias
  full_name: Gustavsson, Mattias
  last_name: Gustavsson
- first_name: Russell
  full_name: Hart, Russell
  last_name: Hart
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
citation:
  ama: 'Nägerl H, Mark M, Haller E, Gustavsson M, Hart R, Danzl JG. Ultracold and
    dense samples of ground-state molecules in lattice potentials. <i>Journal of Physics:
    Conference Series</i>. 2011;264(1). doi:<a href="https://doi.org/10.1088/1742-6596/264/1/012015">10.1088/1742-6596/264/1/012015</a>'
  apa: 'Nägerl, H., Mark, M., Haller, E., Gustavsson, M., Hart, R., &#38; Danzl, J.
    G. (2011). Ultracold and dense samples of ground-state molecules in lattice potentials.
    <i>Journal of Physics: Conference Series</i>. IOP Publishing Ltd. <a href="https://doi.org/10.1088/1742-6596/264/1/012015">https://doi.org/10.1088/1742-6596/264/1/012015</a>'
  chicago: 'Nägerl, Hanns, Manfred Mark, Elmar Haller, Mattias Gustavsson, Russell
    Hart, and Johann G Danzl. “Ultracold and Dense Samples of Ground-State Molecules
    in Lattice Potentials.” <i>Journal of Physics: Conference Series</i>. IOP Publishing
    Ltd., 2011. <a href="https://doi.org/10.1088/1742-6596/264/1/012015">https://doi.org/10.1088/1742-6596/264/1/012015</a>.'
  ieee: 'H. Nägerl, M. Mark, E. Haller, M. Gustavsson, R. Hart, and J. G. Danzl, “Ultracold
    and dense samples of ground-state molecules in lattice potentials,” <i>Journal
    of Physics: Conference Series</i>, vol. 264, no. 1. IOP Publishing Ltd., 2011.'
  ista: 'Nägerl H, Mark M, Haller E, Gustavsson M, Hart R, Danzl JG. 2011. Ultracold
    and dense samples of ground-state molecules in lattice potentials. Journal of
    Physics: Conference Series. 264(1).'
  mla: 'Nägerl, Hanns, et al. “Ultracold and Dense Samples of Ground-State Molecules
    in Lattice Potentials.” <i>Journal of Physics: Conference Series</i>, vol. 264,
    no. 1, IOP Publishing Ltd., 2011, doi:<a href="https://doi.org/10.1088/1742-6596/264/1/012015">10.1088/1742-6596/264/1/012015</a>.'
  short: 'H. Nägerl, M. Mark, E. Haller, M. Gustavsson, R. Hart, J.G. Danzl, Journal
    of Physics: Conference Series 264 (2011).'
date_created: 2018-12-11T11:49:52Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2021-01-12T06:47:54Z
day: '01'
doi: 10.1088/1742-6596/264/1/012015
extern: '1'
external_id:
  arxiv:
  - '1011.0179'
intvolume: '       264'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1011.0179
month: '01'
oa: 1
oa_version: Preprint
publication: 'Journal of Physics: Conference Series'
publication_status: published
publisher: IOP Publishing Ltd.
publist_id: '6340'
status: public
title: Ultracold and dense samples of ground-state molecules in lattice potentials
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 264
year: '2011'
...
---
_id: '1050'
abstract:
- lang: eng
  text: We present experimentally derived potential curves 1?and spin-orbit interaction
    functions for the strongly perturbed AΣu+ 3?and bΠu states of the cesium dimer.
    The results are based on data from several sources. Laser-induced fluorescence
    Fourier transform spectroscopy (LIF FTS) was used some time ago in the Laboratoire
    Aimé Cotton primarily to study the XΣg+ state. More recent work at Tsinghua University
    provides information from moderate 3?resolution spectroscopy on the lowest levels
    of the bΠ0u± state as well as additional high-resolution data. From Innsbruck
    University, we have precision data obtained with cold Cs2 molecules. Recent data
    from Temple University was obtained using the optical-optical double resonance
    polarization spectroscopy technique, and finally, a group at the University of
    Latvia has added additional LIF FTS data. In the Hamiltonian matrix, we have used
    analytic potentials (the expanded Morse oscillator form) with both finite-difference
    (FD) coupled-channel and discrete variable representation (DVR) calculations of
    the term values. Fitted diagonal and off-diagonal spin-orbit functions are obtained
    and compared with ab initio results from Temple and Moscow State universities.
acknowledgement: The work in Temple University was supported by NSF grant no. PHY-0855502.
  S.K. acknowledges support from AFOSR and from NSF grant no. PHY-1005453. S.A., C.M.,
  and J.H. were supported by NSF grants no. PHY-0652938 and PHY-0968898. The work
  at Stony Brook was supported by NSF grants no. PHY-0652459 and PHY-0968905. The
  work in Tsinghua University was supported by NSFC of China, under grant no. 20773072.
  The Moscow team thanks the Russian Foundation for Basic Researches by the grant
  no. 10-03-00195 and MSU Priority Direction 2.3. M.T. and R.F. are grateful to Ilze
  Klincare, Olga Nikolayeva, and Artis Kruzins for their help in spectra analysis,
  as well as appreciate the support from the ESF 2009/0223/1DP/1.1.1.2.0/09/APIA/VIAA/008
  project.
article_processing_charge: No
arxiv: 1
author:
- first_name: Jianmei
  full_name: Bai, Jianmei
  last_name: Bai
- first_name: Ergin
  full_name: Ahmed, Ergin
  last_name: Ahmed
- first_name: Bediha
  full_name: Beser, Bediha
  last_name: Beser
- first_name: Yafei
  full_name: Guan, Yafei
  last_name: Guan
- first_name: Svetlana
  full_name: Kotochigova, Svetlana
  last_name: Kotochigova
- first_name: Marjatta
  full_name: Lyyra, Marjatta
  last_name: Lyyra
- first_name: Seth
  full_name: Ashman, Seth
  last_name: Ashman
- first_name: Christopher
  full_name: Wolfe, Christopher
  last_name: Wolfe
- first_name: John
  full_name: Huennekens, John
  last_name: Huennekens
- first_name: Feng
  full_name: Xie, Feng
  last_name: Xie
- first_name: Dan
  full_name: Li, Dan
  last_name: Li
- first_name: Li
  full_name: Li, Li
  last_name: Li
- first_name: Maris
  full_name: Tamanis, Maris
  last_name: Tamanis
- first_name: Ruvin
  full_name: Ferber, Ruvin
  last_name: Ferber
- first_name: Anastasia
  full_name: Drozdova, Anastasia
  last_name: Drozdova
- first_name: Elena
  full_name: Pazyuk, Elena
  last_name: Pazyuk
- first_name: Andrey
  full_name: Stolyarov, Andrey
  last_name: Stolyarov
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
- first_name: Hanns
  full_name: Nägerl, Hanns
  last_name: Nägerl
- first_name: Nadia
  full_name: Bouloufa, Nadia
  last_name: Bouloufa
- first_name: Olivier
  full_name: Dulieu, Olivier
  last_name: Dulieu
- first_name: Claude
  full_name: Amiot, Claude
  last_name: Amiot
- first_name: Houssam
  full_name: Salami, Houssam
  last_name: Salami
- first_name: Thomas
  full_name: Bergeman, Thomas
  last_name: Bergeman
citation:
  ama: Bai J, Ahmed E, Beser B, et al. Global analysis of data on the spin-orbit-coupled
    A 1Σu+ and b 3Πu inf states of Cs2. <i> Physical Review A - Atomic, Molecular,
    and Optical Physics</i>. 2011;83(3). doi:<a href="https://doi.org/10.1103/PhysRevA.83.032514">10.1103/PhysRevA.83.032514</a>
  apa: Bai, J., Ahmed, E., Beser, B., Guan, Y., Kotochigova, S., Lyyra, M., … Bergeman,
    T. (2011). Global analysis of data on the spin-orbit-coupled A 1Σu+ and b 3Πu
    inf states of Cs2. <i> Physical Review A - Atomic, Molecular, and Optical Physics</i>.
    American Physical Society. <a href="https://doi.org/10.1103/PhysRevA.83.032514">https://doi.org/10.1103/PhysRevA.83.032514</a>
  chicago: Bai, Jianmei, Ergin Ahmed, Bediha Beser, Yafei Guan, Svetlana Kotochigova,
    Marjatta Lyyra, Seth Ashman, et al. “Global Analysis of Data on the Spin-Orbit-Coupled
    A 1Σu+ and b 3Πu Inf States of Cs2.” <i> Physical Review A - Atomic, Molecular,
    and Optical Physics</i>. American Physical Society, 2011. <a href="https://doi.org/10.1103/PhysRevA.83.032514">https://doi.org/10.1103/PhysRevA.83.032514</a>.
  ieee: J. Bai <i>et al.</i>, “Global analysis of data on the spin-orbit-coupled A
    1Σu+ and b 3Πu inf states of Cs2,” <i> Physical Review A - Atomic, Molecular,
    and Optical Physics</i>, vol. 83, no. 3. American Physical Society, 2011.
  ista: Bai J, Ahmed E, Beser B, Guan Y, Kotochigova S, Lyyra M, Ashman S, Wolfe C,
    Huennekens J, Xie F, Li D, Li L, Tamanis M, Ferber R, Drozdova A, Pazyuk E, Stolyarov
    A, Danzl JG, Nägerl H, Bouloufa N, Dulieu O, Amiot C, Salami H, Bergeman T. 2011.
    Global analysis of data on the spin-orbit-coupled A 1Σu+ and b 3Πu inf states
    of Cs2.  Physical Review A - Atomic, Molecular, and Optical Physics. 83(3).
  mla: Bai, Jianmei, et al. “Global Analysis of Data on the Spin-Orbit-Coupled A 1Σu+
    and b 3Πu Inf States of Cs2.” <i> Physical Review A - Atomic, Molecular, and Optical
    Physics</i>, vol. 83, no. 3, American Physical Society, 2011, doi:<a href="https://doi.org/10.1103/PhysRevA.83.032514">10.1103/PhysRevA.83.032514</a>.
  short: J. Bai, E. Ahmed, B. Beser, Y. Guan, S. Kotochigova, M. Lyyra, S. Ashman,
    C. Wolfe, J. Huennekens, F. Xie, D. Li, L. Li, M. Tamanis, R. Ferber, A. Drozdova,
    E. Pazyuk, A. Stolyarov, J.G. Danzl, H. Nägerl, N. Bouloufa, O. Dulieu, C. Amiot,
    H. Salami, T. Bergeman,  Physical Review A - Atomic, Molecular, and Optical Physics
    83 (2011).
date_created: 2018-12-11T11:49:53Z
date_published: 2011-03-28T00:00:00Z
date_updated: 2021-01-12T06:47:55Z
day: '28'
doi: 10.1103/PhysRevA.83.032514
extern: '1'
external_id:
  arxiv:
  - '1101.5412'
intvolume: '        83'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1101.5412
month: '03'
oa: 1
oa_version: Preprint
publication: ' Physical Review A - Atomic, Molecular, and Optical Physics'
publication_status: published
publisher: American Physical Society
publist_id: '6339'
status: public
title: Global analysis of data on the spin-orbit-coupled A 1Σu+ and b 3Πu inf states
  of Cs2
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 83
year: '2011'
...
---
_id: '1051'
abstract:
- lang: eng
  text: We demonstrate the temporal Talbot effect for trapped matter waves using ultracold
    atoms in an optical lattice. We investigate the phase evolution of an array of
    essentially non-interacting matter waves and observe matter-wave collapse and
    revival in the form of a Talbot interference pattern. By using long expansion
    times, we image momentum space with sub-recoil resolution, allowing us to observe
    fractional Talbot fringes up to tenth order.
acknowledgement: We are indebted to R Grimm for generous support and we thank A Daley
  for valuable discussions. We gratefully acknowledge funding by the Austrian Science
  Fund (FWF) within project I153-N16 and within the framework of the European Science
  Foundation (ESF) EuroQUASAR collective research project QuDeGPM.
article_processing_charge: No
author:
- first_name: Manfred
  full_name: Mark, Manfred
  last_name: Mark
- first_name: Elmar
  full_name: Haller, Elmar
  last_name: Haller
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
- first_name: Katharina
  full_name: Lauber, Katharina
  last_name: Lauber
- first_name: Mattias
  full_name: Gustavsson, Mattias
  last_name: Gustavsson
- first_name: Hanns
  full_name: Nägerl, Hanns
  last_name: Nägerl
citation:
  ama: Mark M, Haller E, Danzl JG, Lauber K, Gustavsson M, Nägerl H. Demonstration
    of the temporal matter-wave Talbot effect for trapped matter waves. <i>New Journal
    of Physics</i>. 2011;13. doi:<a href="https://doi.org/10.1088/1367-2630/13/8/085008">10.1088/1367-2630/13/8/085008</a>
  apa: Mark, M., Haller, E., Danzl, J. G., Lauber, K., Gustavsson, M., &#38; Nägerl,
    H. (2011). Demonstration of the temporal matter-wave Talbot effect for trapped
    matter waves. <i>New Journal of Physics</i>. IOP Publishing Ltd. <a href="https://doi.org/10.1088/1367-2630/13/8/085008">https://doi.org/10.1088/1367-2630/13/8/085008</a>
  chicago: Mark, Manfred, Elmar Haller, Johann G Danzl, Katharina Lauber, Mattias
    Gustavsson, and Hanns Nägerl. “Demonstration of the Temporal Matter-Wave Talbot
    Effect for Trapped Matter Waves.” <i>New Journal of Physics</i>. IOP Publishing
    Ltd., 2011. <a href="https://doi.org/10.1088/1367-2630/13/8/085008">https://doi.org/10.1088/1367-2630/13/8/085008</a>.
  ieee: M. Mark, E. Haller, J. G. Danzl, K. Lauber, M. Gustavsson, and H. Nägerl,
    “Demonstration of the temporal matter-wave Talbot effect for trapped matter waves,”
    <i>New Journal of Physics</i>, vol. 13. IOP Publishing Ltd., 2011.
  ista: Mark M, Haller E, Danzl JG, Lauber K, Gustavsson M, Nägerl H. 2011. Demonstration
    of the temporal matter-wave Talbot effect for trapped matter waves. New Journal
    of Physics. 13.
  mla: Mark, Manfred, et al. “Demonstration of the Temporal Matter-Wave Talbot Effect
    for Trapped Matter Waves.” <i>New Journal of Physics</i>, vol. 13, IOP Publishing
    Ltd., 2011, doi:<a href="https://doi.org/10.1088/1367-2630/13/8/085008">10.1088/1367-2630/13/8/085008</a>.
  short: M. Mark, E. Haller, J.G. Danzl, K. Lauber, M. Gustavsson, H. Nägerl, New
    Journal of Physics 13 (2011).
date_created: 2018-12-11T11:49:53Z
date_published: 2011-08-01T00:00:00Z
date_updated: 2021-01-12T06:47:56Z
day: '01'
doi: 10.1088/1367-2630/13/8/085008
extern: '1'
intvolume: '        13'
language:
- iso: eng
month: '08'
oa_version: None
publication: New Journal of Physics
publication_status: published
publisher: IOP Publishing Ltd.
publist_id: '6338'
status: public
title: Demonstration of the temporal matter-wave Talbot effect for trapped matter
  waves
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2011'
...
---
_id: '1052'
abstract:
- lang: eng
  text: The present paper aims at finding optimal parameters for trapping of Cs 2
    molecules in optical lattices, with the perspective of creating a quantum degenerate
    gas of ground-state molecules. We have calculated dynamic polarizabilities of
    Cs 2 molecules subject to an oscillating electric field, using accurate potential
    curves and electronic transition dipole moments. We show that for some particular
    wavelengths of the optical lattice, called &quot;magic wavelengths&quot;, the
    polarizability of the ground-state molecules is equal to the one of a Feshbach
    molecule. As the creation of the sample of ground-state molecules relies on an
    adiabatic population transfer from weakly-bound molecules created on a Feshbach
    resonance, such a coincidence ensures that both the initial and final states are
    favorably trapped by the lattice light, allowing optimized transfer in agreement
    with the experimental observation.
acknowledgement: "We thank E. Haller for important contributions to the experimental
  work and R. Grimm for generous support. We acknowledge  funding  by  the  Austrian
  \ Science  Fund  (FWF)  within\r\nproject Quantum Gases  of Ground-State Molecules,
  \ project\r\nnumber P 21555-N20."
article_processing_charge: No
arxiv: 1
author:
- first_name: Romain
  full_name: Vexiau, Romain
  last_name: Vexiau
- first_name: Nadia
  full_name: Bouloufa, Nadia
  last_name: Bouloufa
- first_name: Mireille
  full_name: Aymar, Mireille
  last_name: Aymar
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
- first_name: Manfred
  full_name: Mark, Manfred
  last_name: Mark
- first_name: Hanns
  full_name: Nägerl, Hanns
  last_name: Nägerl
- first_name: Olivier
  full_name: Dulieu, Olivier
  last_name: Dulieu
citation:
  ama: Vexiau R, Bouloufa N, Aymar M, et al. Optimal trapping wavelengths of Cs 2
    molecules in an optical lattice. <i>European Physical Journal D</i>. 2011;65(1-2):243-250.
    doi:<a href="https://doi.org/10.1140/epjd/e2011-20085-4">10.1140/epjd/e2011-20085-4</a>
  apa: Vexiau, R., Bouloufa, N., Aymar, M., Danzl, J. G., Mark, M., Nägerl, H., &#38;
    Dulieu, O. (2011). Optimal trapping wavelengths of Cs 2 molecules in an optical
    lattice. <i>European Physical Journal D</i>. Springer. <a href="https://doi.org/10.1140/epjd/e2011-20085-4">https://doi.org/10.1140/epjd/e2011-20085-4</a>
  chicago: Vexiau, Romain, Nadia Bouloufa, Mireille Aymar, Johann G Danzl, Manfred
    Mark, Hanns Nägerl, and Olivier Dulieu. “Optimal Trapping Wavelengths of Cs 2
    Molecules in an Optical Lattice.” <i>European Physical Journal D</i>. Springer,
    2011. <a href="https://doi.org/10.1140/epjd/e2011-20085-4">https://doi.org/10.1140/epjd/e2011-20085-4</a>.
  ieee: R. Vexiau <i>et al.</i>, “Optimal trapping wavelengths of Cs 2 molecules in
    an optical lattice,” <i>European Physical Journal D</i>, vol. 65, no. 1–2. Springer,
    pp. 243–250, 2011.
  ista: Vexiau R, Bouloufa N, Aymar M, Danzl JG, Mark M, Nägerl H, Dulieu O. 2011.
    Optimal trapping wavelengths of Cs 2 molecules in an optical lattice. European
    Physical Journal D. 65(1–2), 243–250.
  mla: Vexiau, Romain, et al. “Optimal Trapping Wavelengths of Cs 2 Molecules in an
    Optical Lattice.” <i>European Physical Journal D</i>, vol. 65, no. 1–2, Springer,
    2011, pp. 243–50, doi:<a href="https://doi.org/10.1140/epjd/e2011-20085-4">10.1140/epjd/e2011-20085-4</a>.
  short: R. Vexiau, N. Bouloufa, M. Aymar, J.G. Danzl, M. Mark, H. Nägerl, O. Dulieu,
    European Physical Journal D 65 (2011) 243–250.
date_created: 2018-12-11T11:49:53Z
date_published: 2011-11-01T00:00:00Z
date_updated: 2021-01-12T06:47:56Z
day: '01'
doi: 10.1140/epjd/e2011-20085-4
extern: '1'
external_id:
  arxiv:
  - '1102.1793'
intvolume: '        65'
issue: 1-2
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1102.1793
month: '11'
oa: 1
oa_version: Preprint
page: 243 - 250
publication: European Physical Journal D
publication_status: published
publisher: Springer
publist_id: '6336'
status: public
title: Optimal trapping wavelengths of Cs 2 molecules in an optical lattice
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 65
year: '2011'
...
---
_id: '1053'
abstract:
- lang: eng
  text: We perform precision measurements on a Mott-insulator quantum state of ultracold
    atoms with tunable interactions. We probe the dependence of the superfluid-to-Mott-insulator
    transition on the interaction strength and explore the limits of the standard
    Bose-Hubbard model description. By tuning the on-site interaction energies to
    values comparable to the interband separation, we are able to quantitatively measure
    number-dependent shifts in the excitation spectrum caused by effective multibody
    interactions.
acknowledgement: We are indebted to R. Grimm for generous support. We thank D. Boyanovsky,
  H. Büchler, P. Johnson, W. Niedenzu, and E. Tiesinga for fruitful discussions. We
  gratefully acknowledge funding by the Austrian Science Fund (FWF) within project
  I153-N16 and within the framework of the European Science Foundation (ESF) EuroQUASAR
  collective research project QuDeGPM.
article_processing_charge: No
arxiv: 1
author:
- first_name: Manfred
  full_name: Mark, Manfred
  last_name: Mark
- first_name: Elmar
  full_name: Haller, Elmar
  last_name: Haller
- first_name: Katharina
  full_name: Lauber, Katharina
  last_name: Lauber
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
- first_name: Andrew
  full_name: Daley, Andrew
  last_name: Daley
- first_name: Hanns
  full_name: Nägerl, Hanns
  last_name: Nägerl
citation:
  ama: Mark M, Haller E, Lauber K, Danzl JG, Daley A, Nägerl H. Precision measurements
    on a tunable Mott insulator of ultracold atoms. <i>Physical Review Letters</i>.
    2011;107(17). doi:<a href="https://doi.org/10.1103/PhysRevLett.107.175301">10.1103/PhysRevLett.107.175301</a>
  apa: Mark, M., Haller, E., Lauber, K., Danzl, J. G., Daley, A., &#38; Nägerl, H.
    (2011). Precision measurements on a tunable Mott insulator of ultracold atoms.
    <i>Physical Review Letters</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevLett.107.175301">https://doi.org/10.1103/PhysRevLett.107.175301</a>
  chicago: Mark, Manfred, Elmar Haller, Katharina Lauber, Johann G Danzl, Andrew Daley,
    and Hanns Nägerl. “Precision Measurements on a Tunable Mott Insulator of Ultracold
    Atoms.” <i>Physical Review Letters</i>. American Physical Society, 2011. <a href="https://doi.org/10.1103/PhysRevLett.107.175301">https://doi.org/10.1103/PhysRevLett.107.175301</a>.
  ieee: M. Mark, E. Haller, K. Lauber, J. G. Danzl, A. Daley, and H. Nägerl, “Precision
    measurements on a tunable Mott insulator of ultracold atoms,” <i>Physical Review
    Letters</i>, vol. 107, no. 17. American Physical Society, 2011.
  ista: Mark M, Haller E, Lauber K, Danzl JG, Daley A, Nägerl H. 2011. Precision measurements
    on a tunable Mott insulator of ultracold atoms. Physical Review Letters. 107(17).
  mla: Mark, Manfred, et al. “Precision Measurements on a Tunable Mott Insulator of
    Ultracold Atoms.” <i>Physical Review Letters</i>, vol. 107, no. 17, American Physical
    Society, 2011, doi:<a href="https://doi.org/10.1103/PhysRevLett.107.175301">10.1103/PhysRevLett.107.175301</a>.
  short: M. Mark, E. Haller, K. Lauber, J.G. Danzl, A. Daley, H. Nägerl, Physical
    Review Letters 107 (2011).
date_created: 2018-12-11T11:49:54Z
date_published: 2011-10-18T00:00:00Z
date_updated: 2021-01-12T06:47:56Z
day: '18'
doi: 10.1103/PhysRevLett.107.175301
extern: '1'
external_id:
  arxiv:
  - '1107.1803'
intvolume: '       107'
issue: '17'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1107.1803
month: '10'
oa: 1
oa_version: Preprint
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '6337'
status: public
title: Precision measurements on a tunable Mott insulator of ultracold atoms
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 107
year: '2011'
...
---
_id: '1054'
abstract:
- lang: eng
  text: We investigate local three-body correlations for bosonic particles in three
    dimensions and one dimension as a function of the interaction strength. The three-body
    correlation function g(3) is determined by measuring the three-body recombination
    rate in an ultracold gas of Cs atoms. In three dimensions, we measure the dependence
    of g(3) on the gas parameter in a BEC, finding good agreement with the theoretical
    prediction accounting for beyond-mean-field effects. In one dimension, we observe
    a reduction of g( 3) by several orders of magnitude upon increasing interactions
    from the weakly interacting BEC to the strongly interacting Tonks-Girardeau regime,
    in good agreement with predictions from the Lieb-Liniger model for all strengths
    of interaction.
acknowledgement: We thank R. Grimm for generous support. We gratefully acknowledge
  funding by the Austrian Science Fund (FWF) within Project No. I153-N16 and within
  the framework of the European Science Foundation (ESF) EuroQUASAR collective research
  project QuDeGPM. G. P. acknowledges funding from the EU through NAME-QUAM and AQUTE.
article_processing_charge: No
arxiv: 1
author:
- first_name: Elmar
  full_name: Haller, Elmar
  last_name: Haller
- first_name: Mahmoud
  full_name: Rabie, Mahmoud
  last_name: Rabie
- first_name: Manfred
  full_name: Mark, Manfred
  last_name: Mark
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
- first_name: Russell
  full_name: Hart, Russell
  last_name: Hart
- first_name: Katharina
  full_name: Lauber, Katharina
  last_name: Lauber
- first_name: Guido
  full_name: Pupillo, Guido
  last_name: Pupillo
- first_name: Hanns
  full_name: Nägerl, Hanns
  last_name: Nägerl
citation:
  ama: Haller E, Rabie M, Mark M, et al. Three-body correlation functions and recombination
    rates for bosons in three dimensions and one dimension. <i>Physical Review Letters</i>.
    2011;107(23). doi:<a href="https://doi.org/10.1103/PhysRevLett.107.230404">10.1103/PhysRevLett.107.230404</a>
  apa: Haller, E., Rabie, M., Mark, M., Danzl, J. G., Hart, R., Lauber, K., … Nägerl,
    H. (2011). Three-body correlation functions and recombination rates for bosons
    in three dimensions and one dimension. <i>Physical Review Letters</i>. American
    Physical Society. <a href="https://doi.org/10.1103/PhysRevLett.107.230404">https://doi.org/10.1103/PhysRevLett.107.230404</a>
  chicago: Haller, Elmar, Mahmoud Rabie, Manfred Mark, Johann G Danzl, Russell Hart,
    Katharina Lauber, Guido Pupillo, and Hanns Nägerl. “Three-Body Correlation Functions
    and Recombination Rates for Bosons in Three Dimensions and One Dimension.” <i>Physical
    Review Letters</i>. American Physical Society, 2011. <a href="https://doi.org/10.1103/PhysRevLett.107.230404">https://doi.org/10.1103/PhysRevLett.107.230404</a>.
  ieee: E. Haller <i>et al.</i>, “Three-body correlation functions and recombination
    rates for bosons in three dimensions and one dimension,” <i>Physical Review Letters</i>,
    vol. 107, no. 23. American Physical Society, 2011.
  ista: Haller E, Rabie M, Mark M, Danzl JG, Hart R, Lauber K, Pupillo G, Nägerl H.
    2011. Three-body correlation functions and recombination rates for bosons in three
    dimensions and one dimension. Physical Review Letters. 107(23).
  mla: Haller, Elmar, et al. “Three-Body Correlation Functions and Recombination Rates
    for Bosons in Three Dimensions and One Dimension.” <i>Physical Review Letters</i>,
    vol. 107, no. 23, American Physical Society, 2011, doi:<a href="https://doi.org/10.1103/PhysRevLett.107.230404">10.1103/PhysRevLett.107.230404</a>.
  short: E. Haller, M. Rabie, M. Mark, J.G. Danzl, R. Hart, K. Lauber, G. Pupillo,
    H. Nägerl, Physical Review Letters 107 (2011).
date_created: 2018-12-11T11:49:54Z
date_published: 2011-12-02T00:00:00Z
date_updated: 2021-01-12T06:47:57Z
day: '02'
doi: 10.1103/PhysRevLett.107.230404
extern: '1'
external_id:
  arxiv:
  - '1107.4516'
intvolume: '       107'
issue: '23'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1107.4516
month: '12'
oa: 1
oa_version: Preprint
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '6335'
status: public
title: Three-body correlation functions and recombination rates for bosons in three
  dimensions and one dimension
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 107
year: '2011'
...
---
_id: '757'
abstract:
- lang: eng
  text: Synchronous distributed algorithms are easier to design and prove correct
    than algorithms that tolerate asynchrony. Yet, in the real world, networks experience
    asynchrony and other timing anomalies. In this paper, we address the question
    of how to efficiently transform an algorithm that relies on synchronization into
    an algorithm that tolerates asynchronous executions. We introduce a transformation
    technique from synchronous algorithms to indulgent algorithms [1], which induces
    only a constant overhead in terms of time complexity in well-behaved executions.
    Our technique is based on a new abstraction we call an asynchrony detector, which
    the participating processes implement collectively. The resulting transformation
    works for a large class of colorless tasks, including consensus and set agreement.
    Interestingly, we also show that our technique is relevant for colored tasks,
    by applying it to the renaming problem, to obtain the first indulgent renaming
    algorithm.
acknowledgement: "The authors would like to thank Prof. Hagit Attiya and Nikola\r\nKneˇ\r\nzevi
  ́\r\nc for their help on previous drafts of this paper, and the anonymous reviewers\r\nfor
  their useful feedback."
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: Seth
  full_name: Gilbert, Seth
  last_name: Gilbert
- first_name: Rachid
  full_name: Guerraoui, Rachid
  last_name: Guerraoui
- first_name: Corentin
  full_name: Travers, Corentin
  last_name: Travers
citation:
  ama: 'Alistarh D-A, Gilbert S, Guerraoui R, Travers C. Generating fast indulgent
    algorithms. In: Vol 6522 LNCS. Springer; 2011:41-52. doi:<a href="https://doi.org/10.1007/978-3-642-17679-1_4">10.1007/978-3-642-17679-1_4</a>'
  apa: 'Alistarh, D.-A., Gilbert, S., Guerraoui, R., &#38; Travers, C. (2011). Generating
    fast indulgent algorithms (Vol. 6522 LNCS, pp. 41–52). Presented at the ICDCN:
    International Conference on Distributed Computing and Networking, Springer. <a
    href="https://doi.org/10.1007/978-3-642-17679-1_4">https://doi.org/10.1007/978-3-642-17679-1_4</a>'
  chicago: Alistarh, Dan-Adrian, Seth Gilbert, Rachid Guerraoui, and Corentin Travers.
    “Generating Fast Indulgent Algorithms,” 6522 LNCS:41–52. Springer, 2011. <a href="https://doi.org/10.1007/978-3-642-17679-1_4">https://doi.org/10.1007/978-3-642-17679-1_4</a>.
  ieee: 'D.-A. Alistarh, S. Gilbert, R. Guerraoui, and C. Travers, “Generating fast
    indulgent algorithms,” presented at the ICDCN: International Conference on Distributed
    Computing and Networking, 2011, vol. 6522 LNCS, pp. 41–52.'
  ista: 'Alistarh D-A, Gilbert S, Guerraoui R, Travers C. 2011. Generating fast indulgent
    algorithms. ICDCN: International Conference on Distributed Computing and Networking,
    LNCS, vol. 6522 LNCS, 41–52.'
  mla: Alistarh, Dan-Adrian, et al. <i>Generating Fast Indulgent Algorithms</i>. Vol.
    6522 LNCS, Springer, 2011, pp. 41–52, doi:<a href="https://doi.org/10.1007/978-3-642-17679-1_4">10.1007/978-3-642-17679-1_4</a>.
  short: D.-A. Alistarh, S. Gilbert, R. Guerraoui, C. Travers, in:, Springer, 2011,
    pp. 41–52.
conference:
  name: 'ICDCN: International Conference on Distributed Computing and Networking'
date_created: 2018-12-11T11:48:20Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2023-02-23T13:11:09Z
day: '01'
doi: 10.1007/978-3-642-17679-1_4
extern: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: 41 - 52
publication_status: published
publisher: Springer
publist_id: '6898'
status: public
title: Generating fast indulgent algorithms
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6522 LNCS
year: '2011'
...
---
_id: '759'
abstract:
- lang: eng
  text: 'We study the complexity of renaming, a fundamental problem in distributed
    computing in which a set of processes need to pick distinct names from a given
    namespace. We prove an individual lower bound of Ω(k) process steps for deterministic
    renaming into any namespace of size sub-exponential in k, where k is the number
    of participants. This bound is tight: it draws an exponential separation between
    deterministic and randomized solutions, and implies new tight bounds for deterministic
    fetch-and-increment registers, queues and stacks. The proof of the bound is interesting
    in its own right, for it relies on the first reduction from renaming to another
    fundamental problem in distributed computing: mutual exclusion. We complement
    our individual bound with a global lower bound of Ω(k log (k/c)) on the total
    step complexity of renaming into a namespace of size ck, for any c ≥ 1. This applies
    to randomized algorithms against a strong adversary, and helps derive new global
    lower bounds for randomized approximate counter and fetch-and-increment implementations,
    all tight within logarithmic factors.'
acknowledgement: "The authors would like to thank Hagit Attiya and Keren\r\nCensor-Hillel
  \ for  discussions  and  feedback  on  earlier  versions  of  this  paper,  and
  \ the  anonymous  reviewers  for  their\r\nvery useful suggestions."
article_processing_charge: No
author:
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: James
  full_name: Aspnes, James
  last_name: Aspnes
- first_name: Seth
  full_name: Gilbert, Seth
  last_name: Gilbert
- first_name: Rachid
  full_name: Guerraoui, Rachid
  last_name: Guerraoui
citation:
  ama: 'Alistarh D-A, Aspnes J, Gilbert S, Guerraoui R. The complexity of renaming.
    In: IEEE; 2011:718-727. doi:<a href="https://doi.org/10.1109/FOCS.2011.66">10.1109/FOCS.2011.66</a>'
  apa: 'Alistarh, D.-A., Aspnes, J., Gilbert, S., &#38; Guerraoui, R. (2011). The
    complexity of renaming (pp. 718–727). Presented at the FOCS: Foundations of Computer
    Science, IEEE. <a href="https://doi.org/10.1109/FOCS.2011.66">https://doi.org/10.1109/FOCS.2011.66</a>'
  chicago: Alistarh, Dan-Adrian, James Aspnes, Seth Gilbert, and Rachid Guerraoui.
    “The Complexity of Renaming,” 718–27. IEEE, 2011. <a href="https://doi.org/10.1109/FOCS.2011.66">https://doi.org/10.1109/FOCS.2011.66</a>.
  ieee: 'D.-A. Alistarh, J. Aspnes, S. Gilbert, and R. Guerraoui, “The complexity
    of renaming,” presented at the FOCS: Foundations of Computer Science, 2011, pp.
    718–727.'
  ista: 'Alistarh D-A, Aspnes J, Gilbert S, Guerraoui R. 2011. The complexity of renaming.
    FOCS: Foundations of Computer Science, 718–727.'
  mla: Alistarh, Dan-Adrian, et al. <i>The Complexity of Renaming</i>. IEEE, 2011,
    pp. 718–27, doi:<a href="https://doi.org/10.1109/FOCS.2011.66">10.1109/FOCS.2011.66</a>.
  short: D.-A. Alistarh, J. Aspnes, S. Gilbert, R. Guerraoui, in:, IEEE, 2011, pp.
    718–727.
conference:
  name: 'FOCS: Foundations of Computer Science'
date_created: 2018-12-11T11:48:21Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2023-02-23T13:11:40Z
day: '01'
doi: 10.1109/FOCS.2011.66
extern: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: 718 - 727
publication_status: published
publisher: IEEE
publist_id: '6895'
status: public
title: The complexity of renaming
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '760'
abstract:
- lang: eng
  text: A randomized implementation is given of a test-and-set register with O(log
    log n) individual step complexity and O(n) total step complexity against an oblivious
    adversary. The implementation is linearizable and multi-shot, and shows an exponential
    complexity improvement over previous solutions designed to work against a strong
    adversary.
acknowledgement: The work of Dan Alistarh was supported by the NCCR MICS Project.
  The work of James Aspnes was supported in part by NSF grant CCF-0916389.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: James
  full_name: Aspnes, James
  last_name: Aspnes
citation:
  ama: 'Alistarh D-A, Aspnes J. Sub-logarithmic test-and-set against a weak adversary.
    In: Vol 6950 LNCS. Springer; 2011:97-109. doi:<a href="https://doi.org/10.1007/978-3-642-24100-0_7">10.1007/978-3-642-24100-0_7</a>'
  apa: 'Alistarh, D.-A., &#38; Aspnes, J. (2011). Sub-logarithmic test-and-set against
    a weak adversary (Vol. 6950 LNCS, pp. 97–109). Presented at the DISC: Distributed
    Computing, Springer. <a href="https://doi.org/10.1007/978-3-642-24100-0_7">https://doi.org/10.1007/978-3-642-24100-0_7</a>'
  chicago: Alistarh, Dan-Adrian, and James Aspnes. “Sub-Logarithmic Test-and-Set against
    a Weak Adversary,” 6950 LNCS:97–109. Springer, 2011. <a href="https://doi.org/10.1007/978-3-642-24100-0_7">https://doi.org/10.1007/978-3-642-24100-0_7</a>.
  ieee: 'D.-A. Alistarh and J. Aspnes, “Sub-logarithmic test-and-set against a weak
    adversary,” presented at the DISC: Distributed Computing, 2011, vol. 6950 LNCS,
    pp. 97–109.'
  ista: 'Alistarh D-A, Aspnes J. 2011. Sub-logarithmic test-and-set against a weak
    adversary. DISC: Distributed Computing, LNCS, vol. 6950 LNCS, 97–109.'
  mla: Alistarh, Dan-Adrian, and James Aspnes. <i>Sub-Logarithmic Test-and-Set against
    a Weak Adversary</i>. Vol. 6950 LNCS, Springer, 2011, pp. 97–109, doi:<a href="https://doi.org/10.1007/978-3-642-24100-0_7">10.1007/978-3-642-24100-0_7</a>.
  short: D.-A. Alistarh, J. Aspnes, in:, Springer, 2011, pp. 97–109.
conference:
  name: 'DISC: Distributed Computing'
date_created: 2018-12-11T11:48:21Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2023-02-23T13:12:01Z
day: '01'
doi: 10.1007/978-3-642-24100-0_7
extern: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: 97 - 109
publication_status: published
publisher: Springer
publist_id: '6896'
status: public
title: Sub-logarithmic test-and-set against a weak adversary
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6950 LNCS
year: '2011'
...
---
_id: '761'
abstract:
- lang: eng
  text: We give two new randomized algorithms for strong renaming, both of which work
    against an adaptive adversary in asynchronous shared memory. The first uses repeated
    sampling over a sequence of arrays of decreasing size to assign unique names to
    each of n processes with step complexity O(log3 n). The second transforms any
    sorting network into a strong adaptive renaming protocol, with an expected cost
    equal to the depth of the sorting network. Using an AKS sorting network, this
    gives a strong adaptive renaming algorithm with step complexity O(log k), where
    k is the contention in the current execution. We show this to be optimal based
    on a classic lower bound of Jayanti. We also show that any such strong renaming
    protocol can be used to build a monotone-consistent counter with logarithmic step
    complexity (at the cost of adding a max register) or a linearizable fetch-and-increment
    register (at the cost of increasing the step complexity by a logarithmic factor).
acknowledgement: "We would like to thank Hagit Attiya, Rachid Guerraoui\r\nand Prasad
  Jayanti for useful discussions and support.  We\r\nwould also like to thank the
  anonymous reviewers for many\r\nuseful comments."
article_processing_charge: No
author:
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: James
  full_name: Aspnes, James
  last_name: Aspnes
- first_name: Keren
  full_name: Censor Hillel, Keren
  last_name: Censor Hillel
- first_name: Seth
  full_name: Gilbert, Seth
  last_name: Gilbert
- first_name: Morteza
  full_name: Zadimoghaddam, Morteza
  last_name: Zadimoghaddam
citation:
  ama: 'Alistarh D-A, Aspnes J, Censor Hillel K, Gilbert S, Zadimoghaddam M. Optimal-time
    adaptive strong renaming, with applications to counting. In: ACM; 2011:239-248.
    doi:<a href="https://doi.org/10.1145/1993806.1993850">10.1145/1993806.1993850</a>'
  apa: 'Alistarh, D.-A., Aspnes, J., Censor Hillel, K., Gilbert, S., &#38; Zadimoghaddam,
    M. (2011). Optimal-time adaptive strong renaming, with applications to counting
    (pp. 239–248). Presented at the PODC: Principles of Distributed Computing, ACM.
    <a href="https://doi.org/10.1145/1993806.1993850">https://doi.org/10.1145/1993806.1993850</a>'
  chicago: Alistarh, Dan-Adrian, James Aspnes, Keren Censor Hillel, Seth Gilbert,
    and Morteza Zadimoghaddam. “Optimal-Time Adaptive Strong Renaming, with Applications
    to Counting,” 239–48. ACM, 2011. <a href="https://doi.org/10.1145/1993806.1993850">https://doi.org/10.1145/1993806.1993850</a>.
  ieee: 'D.-A. Alistarh, J. Aspnes, K. Censor Hillel, S. Gilbert, and M. Zadimoghaddam,
    “Optimal-time adaptive strong renaming, with applications to counting,” presented
    at the PODC: Principles of Distributed Computing, 2011, pp. 239–248.'
  ista: 'Alistarh D-A, Aspnes J, Censor Hillel K, Gilbert S, Zadimoghaddam M. 2011.
    Optimal-time adaptive strong renaming, with applications to counting. PODC: Principles
    of Distributed Computing, 239–248.'
  mla: Alistarh, Dan-Adrian, et al. <i>Optimal-Time Adaptive Strong Renaming, with
    Applications to Counting</i>. ACM, 2011, pp. 239–48, doi:<a href="https://doi.org/10.1145/1993806.1993850">10.1145/1993806.1993850</a>.
  short: D.-A. Alistarh, J. Aspnes, K. Censor Hillel, S. Gilbert, M. Zadimoghaddam,
    in:, ACM, 2011, pp. 239–248.
conference:
  name: 'PODC: Principles of Distributed Computing'
date_created: 2018-12-11T11:48:22Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2023-02-23T13:12:17Z
day: '01'
doi: 10.1145/1993806.1993850
extern: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: 239 - 248
publication_status: published
publisher: ACM
publist_id: '6897'
status: public
title: Optimal-time adaptive strong renaming, with applications to counting
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '7701'
abstract:
- lang: eng
  text: During assembly of the Drosophila olfactory circuit, projection neuron (PN)
    dendrites prepattern the developing antennal lobe before the arrival of axons
    from their presynaptic partners, the adult olfactory receptor neurons (ORNs).
    We previously found that levels of transmembrane Semaphorin-1a, which acts as
    a receptor, instruct PN dendrite targeting along the dorsolateral-ventromedial
    axis. Here we show that two secreted semaphorins, Sema-2a and Sema-2b, provide
    spatial cues for PN dendrite targeting. Sema-2a and Sema-2b proteins are distributed
    in gradients opposing the Sema-1a protein gradient, and Sema-1a binds to Sema-2a-expressing
    cells. In Sema-2a and Sema-2b double mutants, PN dendrites that normally target
    dorsolaterally in the antennal lobe mistarget ventromedially, phenocopying cell-autonomous
    Sema-1a removal from these PNs. Cell ablation, cell-specific knockdown, and rescue
    experiments indicate that secreted semaphorins from degenerating larval ORN axons
    direct dendrite targeting. Thus, a degenerating brain structure instructs the
    wiring of a developing circuit through the repulsive action of secreted semaphorins.
article_processing_charge: No
article_type: original
author:
- first_name: Lora Beatrice Jaeger
  full_name: Sweeney, Lora Beatrice Jaeger
  id: 56BE8254-C4F0-11E9-8E45-0B23E6697425
  last_name: Sweeney
  orcid: 0000-0001-9242-5601
- first_name: Ya-Hui
  full_name: Chou, Ya-Hui
  last_name: Chou
- first_name: Zhuhao
  full_name: Wu, Zhuhao
  last_name: Wu
- first_name: William
  full_name: Joo, William
  last_name: Joo
- first_name: Takaki
  full_name: Komiyama, Takaki
  last_name: Komiyama
- first_name: Christopher J.
  full_name: Potter, Christopher J.
  last_name: Potter
- first_name: Alex L.
  full_name: Kolodkin, Alex L.
  last_name: Kolodkin
- first_name: K. Christopher
  full_name: Garcia, K. Christopher
  last_name: Garcia
- first_name: Liqun
  full_name: Luo, Liqun
  last_name: Luo
citation:
  ama: Sweeney LB, Chou Y-H, Wu Z, et al. Secreted semaphorins from degenerating larval
    ORN axons direct adult projection neuron dendrite targeting. <i>Neuron</i>. 2011;72(5):734-747.
    doi:<a href="https://doi.org/10.1016/j.neuron.2011.09.026">10.1016/j.neuron.2011.09.026</a>
  apa: Sweeney, L. B., Chou, Y.-H., Wu, Z., Joo, W., Komiyama, T., Potter, C. J.,
    … Luo, L. (2011). Secreted semaphorins from degenerating larval ORN axons direct
    adult projection neuron dendrite targeting. <i>Neuron</i>. Elsevier. <a href="https://doi.org/10.1016/j.neuron.2011.09.026">https://doi.org/10.1016/j.neuron.2011.09.026</a>
  chicago: Sweeney, Lora B., Ya-Hui Chou, Zhuhao Wu, William Joo, Takaki Komiyama,
    Christopher J. Potter, Alex L. Kolodkin, K. Christopher Garcia, and Liqun Luo.
    “Secreted Semaphorins from Degenerating Larval ORN Axons Direct Adult Projection
    Neuron Dendrite Targeting.” <i>Neuron</i>. Elsevier, 2011. <a href="https://doi.org/10.1016/j.neuron.2011.09.026">https://doi.org/10.1016/j.neuron.2011.09.026</a>.
  ieee: L. B. Sweeney <i>et al.</i>, “Secreted semaphorins from degenerating larval
    ORN axons direct adult projection neuron dendrite targeting,” <i>Neuron</i>, vol.
    72, no. 5. Elsevier, pp. 734–747, 2011.
  ista: Sweeney LB, Chou Y-H, Wu Z, Joo W, Komiyama T, Potter CJ, Kolodkin AL, Garcia
    KC, Luo L. 2011. Secreted semaphorins from degenerating larval ORN axons direct
    adult projection neuron dendrite targeting. Neuron. 72(5), 734–747.
  mla: Sweeney, Lora B., et al. “Secreted Semaphorins from Degenerating Larval ORN
    Axons Direct Adult Projection Neuron Dendrite Targeting.” <i>Neuron</i>, vol.
    72, no. 5, Elsevier, 2011, pp. 734–47, doi:<a href="https://doi.org/10.1016/j.neuron.2011.09.026">10.1016/j.neuron.2011.09.026</a>.
  short: L.B. Sweeney, Y.-H. Chou, Z. Wu, W. Joo, T. Komiyama, C.J. Potter, A.L. Kolodkin,
    K.C. Garcia, L. Luo, Neuron 72 (2011) 734–747.
date_created: 2020-04-30T10:36:12Z
date_published: 2011-12-08T00:00:00Z
date_updated: 2024-01-31T10:13:39Z
day: '08'
doi: 10.1016/j.neuron.2011.09.026
extern: '1'
intvolume: '        72'
issue: '5'
language:
- iso: eng
month: '12'
oa_version: None
page: 734-747
publication: Neuron
publication_identifier:
  issn:
  - 0896-6273
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Secreted semaphorins from degenerating larval ORN axons direct adult projection
  neuron dendrite targeting
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 72
year: '2011'
...
---
_id: '7702'
abstract:
- lang: eng
  text: Longitudinal axon fascicles within the Drosophila embryonic CNS provide connections
    between body segments and are required for coordinated neural signaling along
    the anterior-posterior axis. We show here that establishment of select CNS longitudinal
    tracts and formation of precise mechanosensory afferent innervation to the same
    CNS region are coordinately regulated by the secreted semaphorins Sema-2a and
    Sema-2b. Both Sema-2a and Sema-2b utilize the same neuronal receptor, plexin B
    (PlexB), but serve distinct guidance functions. Localized Sema-2b attraction promotes
    the initial assembly of a subset of CNS longitudinal projections and subsequent
    targeting of chordotonal sensory afferent axons to these same longitudinal connectives,
    whereas broader Sema-2a repulsion serves to prevent aberrant innervation. In the
    absence of Sema-2b or PlexB, chordotonal afferent connectivity within the CNS
    is severely disrupted, resulting in specific larval behavioral deficits. These
    results reveal that distinct semaphorin-mediated guidance functions converge at
    PlexB and are critical for functional neural circuit assembly.
article_processing_charge: No
article_type: original
author:
- first_name: Zhuhao
  full_name: Wu, Zhuhao
  last_name: Wu
- first_name: Lora Beatrice Jaeger
  full_name: Sweeney, Lora Beatrice Jaeger
  id: 56BE8254-C4F0-11E9-8E45-0B23E6697425
  last_name: Sweeney
  orcid: 0000-0001-9242-5601
- first_name: Joseph C.
  full_name: Ayoob, Joseph C.
  last_name: Ayoob
- first_name: Kayam
  full_name: Chak, Kayam
  last_name: Chak
- first_name: Benjamin J.
  full_name: Andreone, Benjamin J.
  last_name: Andreone
- first_name: Tomoko
  full_name: Ohyama, Tomoko
  last_name: Ohyama
- first_name: Rex
  full_name: Kerr, Rex
  last_name: Kerr
- first_name: Liqun
  full_name: Luo, Liqun
  last_name: Luo
- first_name: Marta
  full_name: Zlatic, Marta
  last_name: Zlatic
- first_name: Alex L.
  full_name: Kolodkin, Alex L.
  last_name: Kolodkin
citation:
  ama: Wu Z, Sweeney LB, Ayoob JC, et al. A combinatorial semaphorin code instructs
    the initial steps of sensory circuit assembly in the Drosophila CNS. <i>Neuron</i>.
    2011;70(2):281-298. doi:<a href="https://doi.org/10.1016/j.neuron.2011.02.050">10.1016/j.neuron.2011.02.050</a>
  apa: Wu, Z., Sweeney, L. B., Ayoob, J. C., Chak, K., Andreone, B. J., Ohyama, T.,
    … Kolodkin, A. L. (2011). A combinatorial semaphorin code instructs the initial
    steps of sensory circuit assembly in the Drosophila CNS. <i>Neuron</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.neuron.2011.02.050">https://doi.org/10.1016/j.neuron.2011.02.050</a>
  chicago: Wu, Zhuhao, Lora B. Sweeney, Joseph C. Ayoob, Kayam Chak, Benjamin J. Andreone,
    Tomoko Ohyama, Rex Kerr, Liqun Luo, Marta Zlatic, and Alex L. Kolodkin. “A Combinatorial
    Semaphorin Code Instructs the Initial Steps of Sensory Circuit Assembly in the
    Drosophila CNS.” <i>Neuron</i>. Elsevier, 2011. <a href="https://doi.org/10.1016/j.neuron.2011.02.050">https://doi.org/10.1016/j.neuron.2011.02.050</a>.
  ieee: Z. Wu <i>et al.</i>, “A combinatorial semaphorin code instructs the initial
    steps of sensory circuit assembly in the Drosophila CNS,” <i>Neuron</i>, vol.
    70, no. 2. Elsevier, pp. 281–298, 2011.
  ista: Wu Z, Sweeney LB, Ayoob JC, Chak K, Andreone BJ, Ohyama T, Kerr R, Luo L,
    Zlatic M, Kolodkin AL. 2011. A combinatorial semaphorin code instructs the initial
    steps of sensory circuit assembly in the Drosophila CNS. Neuron. 70(2), 281–298.
  mla: Wu, Zhuhao, et al. “A Combinatorial Semaphorin Code Instructs the Initial Steps
    of Sensory Circuit Assembly in the Drosophila CNS.” <i>Neuron</i>, vol. 70, no.
    2, Elsevier, 2011, pp. 281–98, doi:<a href="https://doi.org/10.1016/j.neuron.2011.02.050">10.1016/j.neuron.2011.02.050</a>.
  short: Z. Wu, L.B. Sweeney, J.C. Ayoob, K. Chak, B.J. Andreone, T. Ohyama, R. Kerr,
    L. Luo, M. Zlatic, A.L. Kolodkin, Neuron 70 (2011) 281–298.
date_created: 2020-04-30T10:36:30Z
date_published: 2011-04-28T00:00:00Z
date_updated: 2024-01-31T10:14:29Z
day: '28'
doi: 10.1016/j.neuron.2011.02.050
extern: '1'
intvolume: '        70'
issue: '2'
language:
- iso: eng
month: '04'
oa_version: None
page: 281-298
publication: Neuron
publication_identifier:
  issn:
  - 0896-6273
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: A combinatorial semaphorin code instructs the initial steps of sensory circuit
  assembly in the Drosophila CNS
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 70
year: '2011'
...
---
_id: '7750'
article_processing_charge: No
article_type: original
author:
- first_name: Matthew Richard
  full_name: Robinson, Matthew Richard
  id: E5D42276-F5DA-11E9-8E24-6303E6697425
  last_name: Robinson
  orcid: 0000-0001-8982-8813
citation:
  ama: Robinson MR. Understanding intrasexual competition and sexual selection requires
    an evolutionary ecology framework. <i>Behavioral Ecology</i>. 2011;22(6):1143-1144.
    doi:<a href="https://doi.org/10.1093/beheco/arr110">10.1093/beheco/arr110</a>
  apa: Robinson, M. R. (2011). Understanding intrasexual competition and sexual selection
    requires an evolutionary ecology framework. <i>Behavioral Ecology</i>. Oxford
    University Press. <a href="https://doi.org/10.1093/beheco/arr110">https://doi.org/10.1093/beheco/arr110</a>
  chicago: Robinson, Matthew Richard. “Understanding Intrasexual Competition and Sexual
    Selection Requires an Evolutionary Ecology Framework.” <i>Behavioral Ecology</i>.
    Oxford University Press, 2011. <a href="https://doi.org/10.1093/beheco/arr110">https://doi.org/10.1093/beheco/arr110</a>.
  ieee: M. R. Robinson, “Understanding intrasexual competition and sexual selection
    requires an evolutionary ecology framework,” <i>Behavioral Ecology</i>, vol. 22,
    no. 6. Oxford University Press, pp. 1143–1144, 2011.
  ista: Robinson MR. 2011. Understanding intrasexual competition and sexual selection
    requires an evolutionary ecology framework. Behavioral Ecology. 22(6), 1143–1144.
  mla: Robinson, Matthew Richard. “Understanding Intrasexual Competition and Sexual
    Selection Requires an Evolutionary Ecology Framework.” <i>Behavioral Ecology</i>,
    vol. 22, no. 6, Oxford University Press, 2011, pp. 1143–44, doi:<a href="https://doi.org/10.1093/beheco/arr110">10.1093/beheco/arr110</a>.
  short: M.R. Robinson, Behavioral Ecology 22 (2011) 1143–1144.
date_created: 2020-04-30T11:01:43Z
date_published: 2011-11-01T00:00:00Z
date_updated: 2021-01-12T08:15:16Z
day: '01'
doi: 10.1093/beheco/arr110
extern: '1'
intvolume: '        22'
issue: '6'
language:
- iso: eng
month: '11'
oa_version: None
page: 1143-1144
publication: Behavioral Ecology
publication_identifier:
  issn:
  - 1465-7279
  - 1045-2249
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
status: public
title: Understanding intrasexual competition and sexual selection requires an evolutionary
  ecology framework
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 22
year: '2011'
...
---
_id: '8025'
abstract:
- lang: eng
  text: Chandelier (axoaxonic) cells (ChCs) are a distinct group of GABAergic interneurons
    that innervate the axon initial segments of pyramidal cells. However, their circuit
    role and the function of their clearly defined anatomical specificity remain unclear.
    Recent work has demonstrated that chandelier cells can produce depolarizing GABAergic
    PSPs, occasionally driving postsynaptic targets to spike. On the other hand, other
    work suggests that ChCs are hyperpolarizing and may have an inhibitory role. These
    disparate functional effects may reflect heterogeneity among ChCs. Here, using
    brain slices from transgenic mouse strains, we first demonstrate that, across
    different neocortical areas and genetic backgrounds, upper Layer 2/3 ChCs belong
    to a single electrophysiologically and morphologically defined population, extensively
    sampling Layer 1 inputs with asymmetric dendrites. Consistent with being a single
    cell type, we find electrical coupling between ChCs. We then investigate the effect
    of chandelier cell activation on pyramidal neuron spiking in several conditions,
    ranging from the resting membrane potential to stimuli designed to approximate
    in vivo membrane potential dynamics. We find that under quiescent conditions,
    chandelier cells are capable of both promoting and inhibiting spike generation,
    depending on the postsynaptic membrane potential. However, during in vivo-like
    membrane potential fluctuations, the dominant postsynaptic effect was a strong
    inhibition. Thus, neocortical chandelier cells, even from within a homogeneous
    population, appear to play a dual role in the circuit, helping to activate quiescent
    pyramidal neurons, while at the same time inhibiting active ones.
article_processing_charge: No
article_type: original
author:
- first_name: A. R.
  full_name: Woodruff, A. R.
  last_name: Woodruff
- first_name: L. M.
  full_name: McGarry, L. M.
  last_name: McGarry
- first_name: Tim P
  full_name: Vogels, Tim P
  id: CB6FF8D2-008F-11EA-8E08-2637E6697425
  last_name: Vogels
  orcid: 0000-0003-3295-6181
- first_name: M.
  full_name: Inan, M.
  last_name: Inan
- first_name: S. A.
  full_name: Anderson, S. A.
  last_name: Anderson
- first_name: R.
  full_name: Yuste, R.
  last_name: Yuste
citation:
  ama: Woodruff AR, McGarry LM, Vogels TP, Inan M, Anderson SA, Yuste R. State-dependent
    function of neocortical chandelier cells. <i>Journal of Neuroscience</i>. 2011;31(49):17872-17886.
    doi:<a href="https://doi.org/10.1523/jneurosci.3894-11.2011">10.1523/jneurosci.3894-11.2011</a>
  apa: Woodruff, A. R., McGarry, L. M., Vogels, T. P., Inan, M., Anderson, S. A.,
    &#38; Yuste, R. (2011). State-dependent function of neocortical chandelier cells.
    <i>Journal of Neuroscience</i>. Society for Neuroscience. <a href="https://doi.org/10.1523/jneurosci.3894-11.2011">https://doi.org/10.1523/jneurosci.3894-11.2011</a>
  chicago: Woodruff, A. R., L. M. McGarry, Tim P Vogels, M. Inan, S. A. Anderson,
    and R. Yuste. “State-Dependent Function of Neocortical Chandelier Cells.” <i>Journal
    of Neuroscience</i>. Society for Neuroscience, 2011. <a href="https://doi.org/10.1523/jneurosci.3894-11.2011">https://doi.org/10.1523/jneurosci.3894-11.2011</a>.
  ieee: A. R. Woodruff, L. M. McGarry, T. P. Vogels, M. Inan, S. A. Anderson, and
    R. Yuste, “State-dependent function of neocortical chandelier cells,” <i>Journal
    of Neuroscience</i>, vol. 31, no. 49. Society for Neuroscience, pp. 17872–17886,
    2011.
  ista: Woodruff AR, McGarry LM, Vogels TP, Inan M, Anderson SA, Yuste R. 2011. State-dependent
    function of neocortical chandelier cells. Journal of Neuroscience. 31(49), 17872–17886.
  mla: Woodruff, A. R., et al. “State-Dependent Function of Neocortical Chandelier
    Cells.” <i>Journal of Neuroscience</i>, vol. 31, no. 49, Society for Neuroscience,
    2011, pp. 17872–86, doi:<a href="https://doi.org/10.1523/jneurosci.3894-11.2011">10.1523/jneurosci.3894-11.2011</a>.
  short: A.R. Woodruff, L.M. McGarry, T.P. Vogels, M. Inan, S.A. Anderson, R. Yuste,
    Journal of Neuroscience 31 (2011) 17872–17886.
date_created: 2020-06-25T13:09:49Z
date_published: 2011-12-07T00:00:00Z
date_updated: 2021-01-12T08:16:36Z
day: '7'
doi: 10.1523/jneurosci.3894-11.2011
extern: '1'
external_id:
  pmid:
  - '22159102'
intvolume: '        31'
issue: '49'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4071969/
month: '12'
oa: 1
oa_version: Published Version
page: 17872-17886
pmid: 1
publication: Journal of Neuroscience
publication_identifier:
  issn:
  - 0270-6474
  - 1529-2401
publication_status: published
publisher: Society for Neuroscience
quality_controlled: '1'
status: public
title: State-dependent function of neocortical chandelier cells
type: journal_article
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 31
year: '2011'
...
---
_id: '8074'
abstract:
- lang: eng
  text: Cortical neurons receive balanced excitatory and inhibitory synaptic currents.
    Such a balance could be established and maintained in an experience-dependent
    manner by synaptic plasticity at inhibitory synapses. We show that this mechanism
    provides an explanation for the sparse firing patterns observed in response to
    natural stimuli and fits well with a recently observed interaction of excitatory
    and inhibitory receptive field plasticity. The introduction of inhibitory plasticity
    in suitable recurrent networks provides a homeostatic mechanism that leads to
    asynchronous irregular network states. Further, it can accommodate synaptic memories
    with activity patterns that become indiscernible from the background state but
    can be reactivated by external stimuli. Our results suggest an essential role
    of inhibitory plasticity in the formation and maintenance of functional cortical
    circuitry.
article_processing_charge: No
article_type: original
author:
- first_name: Tim P
  full_name: Vogels, Tim P
  id: CB6FF8D2-008F-11EA-8E08-2637E6697425
  last_name: Vogels
  orcid: 0000-0003-3295-6181
- first_name: H.
  full_name: Sprekeler, H.
  last_name: Sprekeler
- first_name: F.
  full_name: Zenke, F.
  last_name: Zenke
- first_name: C.
  full_name: Clopath, C.
  last_name: Clopath
- first_name: W.
  full_name: Gerstner, W.
  last_name: Gerstner
citation:
  ama: Vogels TP, Sprekeler H, Zenke F, Clopath C, Gerstner W. Inhibitory plasticity
    balances excitation and inhibition in sensory pathways and memory networks. <i>Science</i>.
    2011;334(6062):1569-1573. doi:<a href="https://doi.org/10.1126/science.1211095">10.1126/science.1211095</a>
  apa: Vogels, T. P., Sprekeler, H., Zenke, F., Clopath, C., &#38; Gerstner, W. (2011).
    Inhibitory plasticity balances excitation and inhibition in sensory pathways and
    memory networks. <i>Science</i>. American Association for the Advancement of Science.
    <a href="https://doi.org/10.1126/science.1211095">https://doi.org/10.1126/science.1211095</a>
  chicago: Vogels, Tim P, H. Sprekeler, F. Zenke, C. Clopath, and W. Gerstner. “Inhibitory
    Plasticity Balances Excitation and Inhibition in Sensory Pathways and Memory Networks.”
    <i>Science</i>. American Association for the Advancement of Science, 2011. <a
    href="https://doi.org/10.1126/science.1211095">https://doi.org/10.1126/science.1211095</a>.
  ieee: T. P. Vogels, H. Sprekeler, F. Zenke, C. Clopath, and W. Gerstner, “Inhibitory
    plasticity balances excitation and inhibition in sensory pathways and memory networks,”
    <i>Science</i>, vol. 334, no. 6062. American Association for the Advancement of
    Science, pp. 1569–1573, 2011.
  ista: Vogels TP, Sprekeler H, Zenke F, Clopath C, Gerstner W. 2011. Inhibitory plasticity
    balances excitation and inhibition in sensory pathways and memory networks. Science.
    334(6062), 1569–1573.
  mla: Vogels, Tim P., et al. “Inhibitory Plasticity Balances Excitation and Inhibition
    in Sensory Pathways and Memory Networks.” <i>Science</i>, vol. 334, no. 6062,
    American Association for the Advancement of Science, 2011, pp. 1569–73, doi:<a
    href="https://doi.org/10.1126/science.1211095">10.1126/science.1211095</a>.
  short: T.P. Vogels, H. Sprekeler, F. Zenke, C. Clopath, W. Gerstner, Science 334
    (2011) 1569–1573.
date_created: 2020-06-30T13:26:17Z
date_published: 2011-12-16T00:00:00Z
date_updated: 2021-06-02T14:57:22Z
day: '16'
doi: 10.1126/science.1211095
extern: '1'
external_id:
  pmid:
  - '22075724'
intvolume: '       334'
issue: '6062'
language:
- iso: eng
month: '12'
oa_version: None
page: 1569-1573
pmid: 1
publication: Science
publication_identifier:
  issn:
  - 0036-8075
  - 1095-9203
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1126/science.336.6083.802-c
scopus_import: '1'
status: public
title: Inhibitory plasticity balances excitation and inhibition in sensory pathways
  and memory networks
type: journal_article
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 334
year: '2011'
...
---
_id: '8464'
abstract:
- lang: eng
  text: 'Nonsymmetric motion: Solid‐state NMR measurements of dipolar coupling tensors
    provide insight into protein dynamics. The hitherto ignored asymmetry of the dipolar
    coupling tensor contains valuable information about motional asymmetry, which
    was used in the first direct site‐resolved measurement of such tensors. Important
    motions such as rotamer jumps can now be directly detected in the solid state.'
article_processing_charge: No
article_type: original
author:
- first_name: Paul
  full_name: Schanda, Paul
  id: 7B541462-FAF6-11E9-A490-E8DFE5697425
  last_name: Schanda
  orcid: 0000-0002-9350-7606
- first_name: Matthias
  full_name: Huber, Matthias
  last_name: Huber
- first_name: Jérôme
  full_name: Boisbouvier, Jérôme
  last_name: Boisbouvier
- first_name: Beat H.
  full_name: Meier, Beat H.
  last_name: Meier
- first_name: Matthias
  full_name: Ernst, Matthias
  last_name: Ernst
citation:
  ama: Schanda P, Huber M, Boisbouvier J, Meier BH, Ernst M. Solid-state NMR measurements
    of asymmetric dipolar couplings provide insight into protein side-chain motion.
    <i>Angewandte Chemie International Edition</i>. 2011;50(46):11005-11009. doi:<a
    href="https://doi.org/10.1002/anie.201103944">10.1002/anie.201103944</a>
  apa: Schanda, P., Huber, M., Boisbouvier, J., Meier, B. H., &#38; Ernst, M. (2011).
    Solid-state NMR measurements of asymmetric dipolar couplings provide insight into
    protein side-chain motion. <i>Angewandte Chemie International Edition</i>. Wiley.
    <a href="https://doi.org/10.1002/anie.201103944">https://doi.org/10.1002/anie.201103944</a>
  chicago: Schanda, Paul, Matthias Huber, Jérôme Boisbouvier, Beat H. Meier, and Matthias
    Ernst. “Solid-State NMR Measurements of Asymmetric Dipolar Couplings Provide Insight
    into Protein Side-Chain Motion.” <i>Angewandte Chemie International Edition</i>.
    Wiley, 2011. <a href="https://doi.org/10.1002/anie.201103944">https://doi.org/10.1002/anie.201103944</a>.
  ieee: P. Schanda, M. Huber, J. Boisbouvier, B. H. Meier, and M. Ernst, “Solid-state
    NMR measurements of asymmetric dipolar couplings provide insight into protein
    side-chain motion,” <i>Angewandte Chemie International Edition</i>, vol. 50, no.
    46. Wiley, pp. 11005–11009, 2011.
  ista: Schanda P, Huber M, Boisbouvier J, Meier BH, Ernst M. 2011. Solid-state NMR
    measurements of asymmetric dipolar couplings provide insight into protein side-chain
    motion. Angewandte Chemie International Edition. 50(46), 11005–11009.
  mla: Schanda, Paul, et al. “Solid-State NMR Measurements of Asymmetric Dipolar Couplings
    Provide Insight into Protein Side-Chain Motion.” <i>Angewandte Chemie International
    Edition</i>, vol. 50, no. 46, Wiley, 2011, pp. 11005–09, doi:<a href="https://doi.org/10.1002/anie.201103944">10.1002/anie.201103944</a>.
  short: P. Schanda, M. Huber, J. Boisbouvier, B.H. Meier, M. Ernst, Angewandte Chemie
    International Edition 50 (2011) 11005–11009.
date_created: 2020-09-18T10:09:40Z
date_published: 2011-09-14T00:00:00Z
date_updated: 2021-01-12T08:19:27Z
day: '14'
doi: 10.1002/anie.201103944
extern: '1'
intvolume: '        50'
issue: '46'
language:
- iso: eng
month: '09'
oa_version: None
page: 11005-11009
publication: Angewandte Chemie International Edition
publication_identifier:
  issn:
  - 1433-7851
publication_status: published
publisher: Wiley
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1002/anie.201206663
status: public
title: Solid-state NMR measurements of asymmetric dipolar couplings provide insight
  into protein side-chain motion
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 50
year: '2011'
...
