---
_id: '2100'
abstract:
- lang: eng
  text: Acquiring panoramic images using stitching takes a lot of time and moving
    objects may cause ghosting. It is also difficult to obtain a full spherical panorama,
    because the downward picture cannot be captured while the camera is mounted on
    the tripod.
author:
- first_name: Jonas
  full_name: Pfeil, Jonas
  last_name: Pfeil
- first_name: Kristian
  full_name: Hildebrand, Kristian
  last_name: Hildebrand
- first_name: Carsten
  full_name: Gremzow, Carsten
  last_name: Gremzow
- first_name: Bernd
  full_name: Bernd Bickel
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
- first_name: Marc
  full_name: Alexa, Marc
  last_name: Alexa
citation:
  ama: 'Pfeil J, Hildebrand K, Gremzow C, Bickel B, Alexa M. Throwable panoramic ball
    camera. In: ACM; 2011. doi:<a href="https://doi.org/10.1145/2073370.2073373">10.1145/2073370.2073373</a>'
  apa: Pfeil, J., Hildebrand, K., Gremzow, C., Bickel, B., &#38; Alexa, M. (2011).
    Throwable panoramic ball camera. Presented at the SIGGRAPH Asia, ACM. <a href="https://doi.org/10.1145/2073370.2073373">https://doi.org/10.1145/2073370.2073373</a>
  chicago: Pfeil, Jonas, Kristian Hildebrand, Carsten Gremzow, Bernd Bickel, and Marc
    Alexa. “Throwable Panoramic Ball Camera.” ACM, 2011. <a href="https://doi.org/10.1145/2073370.2073373">https://doi.org/10.1145/2073370.2073373</a>.
  ieee: J. Pfeil, K. Hildebrand, C. Gremzow, B. Bickel, and M. Alexa, “Throwable panoramic
    ball camera,” presented at the SIGGRAPH Asia, 2011.
  ista: Pfeil J, Hildebrand K, Gremzow C, Bickel B, Alexa M. 2011. Throwable panoramic
    ball camera. SIGGRAPH Asia.
  mla: Pfeil, Jonas, et al. <i>Throwable Panoramic Ball Camera</i>. ACM, 2011, doi:<a
    href="https://doi.org/10.1145/2073370.2073373">10.1145/2073370.2073373</a>.
  short: J. Pfeil, K. Hildebrand, C. Gremzow, B. Bickel, M. Alexa, in:, ACM, 2011.
conference:
  name: SIGGRAPH Asia
date_created: 2018-12-11T11:55:43Z
date_published: 2011-12-01T00:00:00Z
date_updated: 2021-01-12T06:55:19Z
day: '01'
doi: 10.1145/2073370.2073373
extern: 1
fulldoi: https://doi.org/10.1145/2073370.2073373
month: '12'
publication_status: published
publisher: ACM
publist_id: '4934'
quality_controlled: 0
status: public
title: Throwable panoramic ball camera
type: conference
year: '2011'
...
---
OA_type: closed access
_id: '21107'
abstract:
- lang: eng
  text: The crystal structure of the decamer sequence d(CGGGTACCCG)4 as a four-way
    Holliday junction has been determined at 2.35 Å resolution. The sequence was designed
    in order to understand the principles that govern the relationship between sequence
    and branching structure. It crystallized as a four-way junction structure with
    an overall geometry similar to those of previously determined Holliday junction
    structures.
article_processing_charge: No
article_type: original
author:
- first_name: Pradeep K
  full_name: Mandal, Pradeep K
  id: 6a3def15-d4b4-11ef-9fa9-a24c1f545ec3
  last_name: Mandal
  orcid: 0000-0001-5996-956X
- first_name: S.
  full_name: Venkadesh, S.
  last_name: Venkadesh
- first_name: N.
  full_name: Gautham, N.
  last_name: Gautham
citation:
  ama: Mandal PK, Venkadesh S, Gautham N. Structure of d(CGGGTACCCG)4 as a four-way
    Holliday junction. <i>Acta Crystallographica Section F Structural Biology Communications</i>.
    2011;67(12):1506-1510. doi:<a href="https://doi.org/10.1107/s1744309111046616">10.1107/s1744309111046616</a>
  apa: Mandal, P. K., Venkadesh, S., &#38; Gautham, N. (2011). Structure of d(CGGGTACCCG)4
    as a four-way Holliday junction. <i>Acta Crystallographica Section F Structural
    Biology Communications</i>. International Union of Crystallography. <a href="https://doi.org/10.1107/s1744309111046616">https://doi.org/10.1107/s1744309111046616</a>
  chicago: Mandal, Pradeep K, S. Venkadesh, and N. Gautham. “Structure of d(CGGGTACCCG)4
    as a Four-Way Holliday Junction.” <i>Acta Crystallographica Section F Structural
    Biology Communications</i>. International Union of Crystallography, 2011. <a href="https://doi.org/10.1107/s1744309111046616">https://doi.org/10.1107/s1744309111046616</a>.
  ieee: P. K. Mandal, S. Venkadesh, and N. Gautham, “Structure of d(CGGGTACCCG)4 as
    a four-way Holliday junction,” <i>Acta Crystallographica Section F Structural
    Biology Communications</i>, vol. 67, no. 12. International Union of Crystallography,
    pp. 1506–1510, 2011.
  ista: Mandal PK, Venkadesh S, Gautham N. 2011. Structure of d(CGGGTACCCG)4 as a
    four-way Holliday junction. Acta Crystallographica Section F Structural Biology
    Communications. 67(12), 1506–1510.
  mla: Mandal, Pradeep K., et al. “Structure of d(CGGGTACCCG)4 as a Four-Way Holliday
    Junction.” <i>Acta Crystallographica Section F Structural Biology Communications</i>,
    vol. 67, no. 12, International Union of Crystallography, 2011, pp. 1506–10, doi:<a
    href="https://doi.org/10.1107/s1744309111046616">10.1107/s1744309111046616</a>.
  short: P.K. Mandal, S. Venkadesh, N. Gautham, Acta Crystallographica Section F Structural
    Biology Communications 67 (2011) 1506–1510.
date_created: 2026-01-29T22:06:25Z
date_published: 2011-12-01T00:00:00Z
date_updated: 2026-02-23T08:59:44Z
day: '01'
doi: 10.1107/s1744309111046616
extern: '1'
fulldoi: https://doi.org/10.1107/s1744309111046616
has_accepted_license: '1'
intvolume: '        67'
issue: '12'
language:
- iso: eng
month: '12'
oa_version: None
page: 1506-1510
publication: Acta Crystallographica Section F Structural Biology Communications
publication_identifier:
  issn:
  - 1744-3091
publication_status: published
publisher: International Union of Crystallography
quality_controlled: '1'
status: public
title: Structure of d(CGGGTACCCG)4 as a four-way Holliday junction
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 67
year: '2011'
...
---
OA_type: free access
_id: '21108'
abstract:
- lang: eng
  text: We report here the crystal structure of the partially self-complementary decameric
    sequence d(CGGCGGCCGC), which self assembles to form a four-way junction with
    sticky ends. Each junction binds to four others through Watson–Crick base pairing
    at the sticky ends to form a rhombic structure. The rhombuses bind to each other
    and form two dimensional tiles. The tiles stack to form the crystal. The crystal
    diffracted in the space group P1 to a resolution of 2.5 Å. The junction has the
    anti-parallel stacked-X conformation like other junction structures, though the
    formation of the rhombic net noticeably alters the details of the junction geometry.
article_processing_charge: No
article_type: original
author:
- first_name: S.
  full_name: Venkadesh, S.
  last_name: Venkadesh
- first_name: Pradeep K
  full_name: Mandal, Pradeep K
  id: 6a3def15-d4b4-11ef-9fa9-a24c1f545ec3
  last_name: Mandal
  orcid: 0000-0001-5996-956X
- first_name: N.
  full_name: Gautham, N.
  last_name: Gautham
citation:
  ama: Venkadesh S, Mandal PK, Gautham N. The sequence d(CGGCGGCCGC) self-assembles
    into a two dimensional rhombic DNA lattice. <i>Biochemical and Biophysical Research
    Communications</i>. 2011;407(3):548-551. doi:<a href="https://doi.org/10.1016/j.bbrc.2011.03.056">10.1016/j.bbrc.2011.03.056</a>
  apa: Venkadesh, S., Mandal, P. K., &#38; Gautham, N. (2011). The sequence d(CGGCGGCCGC)
    self-assembles into a two dimensional rhombic DNA lattice. <i>Biochemical and
    Biophysical Research Communications</i>. Elsevier. <a href="https://doi.org/10.1016/j.bbrc.2011.03.056">https://doi.org/10.1016/j.bbrc.2011.03.056</a>
  chicago: Venkadesh, S., Pradeep K Mandal, and N. Gautham. “The Sequence d(CGGCGGCCGC)
    Self-Assembles into a Two Dimensional Rhombic DNA Lattice.” <i>Biochemical and
    Biophysical Research Communications</i>. Elsevier, 2011. <a href="https://doi.org/10.1016/j.bbrc.2011.03.056">https://doi.org/10.1016/j.bbrc.2011.03.056</a>.
  ieee: S. Venkadesh, P. K. Mandal, and N. Gautham, “The sequence d(CGGCGGCCGC) self-assembles
    into a two dimensional rhombic DNA lattice,” <i>Biochemical and Biophysical Research
    Communications</i>, vol. 407, no. 3. Elsevier, pp. 548–551, 2011.
  ista: Venkadesh S, Mandal PK, Gautham N. 2011. The sequence d(CGGCGGCCGC) self-assembles
    into a two dimensional rhombic DNA lattice. Biochemical and Biophysical Research
    Communications. 407(3), 548–551.
  mla: Venkadesh, S., et al. “The Sequence d(CGGCGGCCGC) Self-Assembles into a Two
    Dimensional Rhombic DNA Lattice.” <i>Biochemical and Biophysical Research Communications</i>,
    vol. 407, no. 3, Elsevier, 2011, pp. 548–51, doi:<a href="https://doi.org/10.1016/j.bbrc.2011.03.056">10.1016/j.bbrc.2011.03.056</a>.
  short: S. Venkadesh, P.K. Mandal, N. Gautham, Biochemical and Biophysical Research
    Communications 407 (2011) 548–551.
date_created: 2026-01-29T22:09:20Z
date_published: 2011-04-15T00:00:00Z
date_updated: 2026-02-20T09:11:23Z
day: '15'
doi: 10.1016/j.bbrc.2011.03.056
extern: '1'
external_id:
  pmid:
  - '21419105'
fulldoi: https://doi.org/10.1016/j.bbrc.2011.03.056
has_accepted_license: '1'
intvolume: '       407'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.bbrc.2011.03.056
month: '04'
oa: 1
oa_version: Published Version
page: 548-551
pmid: 1
publication: Biochemical and Biophysical Research Communications
publication_identifier:
  issn:
  - 0006-291X
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: The sequence d(CGGCGGCCGC) self-assembles into a two dimensional rhombic DNA
  lattice
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 407
year: '2011'
...
---
OA_type: free access
_id: '21109'
abstract:
- lang: eng
  text: We report the 2.6 Å resolution crystal structure of the tetra-decamer d(CGCGGGTACCCGCG)
    in the tetragonal space group P43. This sequence contains the KpnI restriction
    site GGTACC in the centre which is flanked by alternating ‘CG’ sequences, and
    has a ‘TA’ step at the centre. These are features could favour the left-handed
    Z type helix. Despite this, overall the molecule has the A form. This is the first
    tetra-decamer crystallized in the A-DNA conformation, i.e. more than one full
    turn of the A helix. The crystallographic asymmetric unit consists of one tetra-decamer
    duplex. The helical twist and slide, as well as the base pair–base pair stacking
    interactions show alternations at the alternating pyrimidine–purine and purine–pyrimidine
    base steps. This variation is reminiscent of the dinucleotide repeat in left-handed
    Z-DNA helices. The crystal packing is unlike other A-DNA crystal structures, with
    each helix having a large number of contacts of many different types with symmetry-related
    neighbours.
article_processing_charge: No
article_type: original
author:
- first_name: S.
  full_name: Venkadesh, S.
  last_name: Venkadesh
- first_name: Pradeep K
  full_name: Mandal, Pradeep K
  id: 6a3def15-d4b4-11ef-9fa9-a24c1f545ec3
  last_name: Mandal
  orcid: 0000-0001-5996-956X
- first_name: N.
  full_name: Gautham, N.
  last_name: Gautham
citation:
  ama: Venkadesh S, Mandal PK, Gautham N. The structure of a full turn of an A-DNA
    duplex d(CGCGGGTACCCGCG)2. <i>Biochemical and Biophysical Research Communications</i>.
    2011;407(2):307-312. doi:<a href="https://doi.org/10.1016/j.bbrc.2011.03.007">10.1016/j.bbrc.2011.03.007</a>
  apa: Venkadesh, S., Mandal, P. K., &#38; Gautham, N. (2011). The structure of a
    full turn of an A-DNA duplex d(CGCGGGTACCCGCG)2. <i>Biochemical and Biophysical
    Research Communications</i>. Elsevier. <a href="https://doi.org/10.1016/j.bbrc.2011.03.007">https://doi.org/10.1016/j.bbrc.2011.03.007</a>
  chicago: Venkadesh, S., Pradeep K Mandal, and N. Gautham. “The Structure of a Full
    Turn of an A-DNA Duplex d(CGCGGGTACCCGCG)2.” <i>Biochemical and Biophysical Research
    Communications</i>. Elsevier, 2011. <a href="https://doi.org/10.1016/j.bbrc.2011.03.007">https://doi.org/10.1016/j.bbrc.2011.03.007</a>.
  ieee: S. Venkadesh, P. K. Mandal, and N. Gautham, “The structure of a full turn
    of an A-DNA duplex d(CGCGGGTACCCGCG)2,” <i>Biochemical and Biophysical Research
    Communications</i>, vol. 407, no. 2. Elsevier, pp. 307–312, 2011.
  ista: Venkadesh S, Mandal PK, Gautham N. 2011. The structure of a full turn of an
    A-DNA duplex d(CGCGGGTACCCGCG)2. Biochemical and Biophysical Research Communications.
    407(2), 307–312.
  mla: Venkadesh, S., et al. “The Structure of a Full Turn of an A-DNA Duplex d(CGCGGGTACCCGCG)2.”
    <i>Biochemical and Biophysical Research Communications</i>, vol. 407, no. 2, Elsevier,
    2011, pp. 307–12, doi:<a href="https://doi.org/10.1016/j.bbrc.2011.03.007">10.1016/j.bbrc.2011.03.007</a>.
  short: S. Venkadesh, P.K. Mandal, N. Gautham, Biochemical and Biophysical Research
    Communications 407 (2011) 307–312.
date_created: 2026-01-29T22:10:30Z
date_published: 2011-04-08T00:00:00Z
date_updated: 2026-02-20T09:01:51Z
day: '08'
doi: 10.1016/j.bbrc.2011.03.007
extern: '1'
external_id:
  pmid:
  - '21397589'
fulldoi: https://doi.org/10.1016/j.bbrc.2011.03.007
has_accepted_license: '1'
intvolume: '       407'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.bbrc.2011.03.007
month: '04'
oa: 1
oa_version: None
page: 307-312
pmid: 1
publication: Biochemical and Biophysical Research Communications
publication_identifier:
  issn:
  - 0006-291X
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: The structure of a full turn of an A-DNA duplex d(CGCGGGTACCCGCG)2
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 407
year: '2011'
...
---
_id: '2116'
abstract:
- lang: eng
  text: Let P be the Ornstein-Uhlenbeck semigroup associated with the stochastic Cauchy
    problem  dU(t)=AU(t)dt+dWH(t), where A is the generator of a C 0-semigroup S on
    a Banach space E, H is a Hilbert subspace of E, and W H is an H-cylindrical Brownian
    motion. Assuming that S restricts to a C 0-semigroup on H, we obtain L p -bounds
    for D H P(t). We show that if P is analytic, then the invariance assumption is
    fulfilled. As an application we determine the L p -domain of the generator of
    P explicitly in the case where S restricts to a C 0-semigroup on H which is similar
    to an analytic contraction semigroup. The results are applied to the 1D stochastic
    heat equation driven by additive space-time white noise.
acknowledgement: 'The authors are supported by VIDI subsidy 639.032.201 (JM) and VICI
  subsidy 639.033.604 (JvN) of the Netherlands Organisation for Scientific Research
  (NWO). '
author:
- first_name: Jan
  full_name: Jan Maas
  id: 4C5696CE-F248-11E8-B48F-1D18A9856A87
  last_name: Maas
  orcid: 0000-0002-0845-1338
- first_name: Jan
  full_name: Van Neerven, Jan
  last_name: Van Neerven
citation:
  ama: 'Maas J, Van Neerven J. Gradient estimates and domain identification for analytic
    Ornstein-Uhlenbeck operators. In: <i>Parabolic Problems</i>. Vol 80. Birkhäuser;
    2011:463-477. doi:<a href="https://doi.org/10.1007/978-3-0348-0075-4_24">10.1007/978-3-0348-0075-4_24</a>'
  apa: Maas, J., &#38; Van Neerven, J. (2011). Gradient estimates and domain identification
    for analytic Ornstein-Uhlenbeck operators. In <i>Parabolic Problems</i> (Vol.
    80, pp. 463–477). Birkhäuser. <a href="https://doi.org/10.1007/978-3-0348-0075-4_24">https://doi.org/10.1007/978-3-0348-0075-4_24</a>
  chicago: Maas, Jan, and Jan Van Neerven. “Gradient Estimates and Domain Identification
    for Analytic Ornstein-Uhlenbeck Operators.” In <i>Parabolic Problems</i>, 80:463–77.
    Birkhäuser, 2011. <a href="https://doi.org/10.1007/978-3-0348-0075-4_24">https://doi.org/10.1007/978-3-0348-0075-4_24</a>.
  ieee: J. Maas and J. Van Neerven, “Gradient estimates and domain identification
    for analytic Ornstein-Uhlenbeck operators,” in <i>Parabolic Problems</i>, vol.
    80, Birkhäuser, 2011, pp. 463–477.
  ista: 'Maas J, Van Neerven J. 2011.Gradient estimates and domain identification
    for analytic Ornstein-Uhlenbeck operators. In: Parabolic Problems. vol. 80, 463–477.'
  mla: Maas, Jan, and Jan Van Neerven. “Gradient Estimates and Domain Identification
    for Analytic Ornstein-Uhlenbeck Operators.” <i>Parabolic Problems</i>, vol. 80,
    Birkhäuser, 2011, pp. 463–77, doi:<a href="https://doi.org/10.1007/978-3-0348-0075-4_24">10.1007/978-3-0348-0075-4_24</a>.
  short: J. Maas, J. Van Neerven, in:, Parabolic Problems, Birkhäuser, 2011, pp. 463–477.
date_created: 2018-12-11T11:55:48Z
date_published: 2011-06-10T00:00:00Z
date_updated: 2021-01-12T06:55:24Z
day: '10'
doi: 10.1007/978-3-0348-0075-4_24
extern: 1
fulldoi: https://doi.org/10.1007/978-3-0348-0075-4_24
intvolume: '        80'
main_file_link:
- open_access: '1'
  url: 'http://arxiv.org/abs/0911.4336 '
month: '06'
oa: 1
page: 463 - 477
publication: Parabolic Problems
publication_status: published
publisher: Birkhäuser
publist_id: '4918'
quality_controlled: 0
status: public
title: Gradient estimates and domain identification for analytic Ornstein-Uhlenbeck
  operators
type: book_chapter
volume: 80
year: '2011'
...
---
_id: '2122'
abstract:
- lang: eng
  text: We study, in L1(R̃n; γ) with respect to the gaussian measure, non- tangential
    maximal functions and conical square functions associ- ated with the Ornstein-Uhlenbeck
    operator by developing a set of techniques which allow us, to some extent, to
    compensate for the non-doubling character of the gaussian measure. The main result
    asserts that conical square functions can be controlled in L1-norm by non-tangential
    maximal functions. Along the way we prove a change of aperture result for the
    latter. This complements recent results on gaussian Hardy spaces due to Mauceri
    and Meda.
acknowledgement: The first named author is supported by Rubicon subsidy 680-50-0901
  of the Netherlands Organisation for Scientific Research (NWO). The second named
  author is supported by VICI subsidy 639.033.604 of the Netherlands Organisation
  for Scientific Research (NWO
author:
- first_name: Jan
  full_name: Jan Maas
  id: 4C5696CE-F248-11E8-B48F-1D18A9856A87
  last_name: Maas
  orcid: 0000-0002-0845-1338
- first_name: Jan
  full_name: van Neerven, Jan M
  last_name: Van Neerven
- first_name: Pierre
  full_name: Portal, Pierre
  last_name: Portal
citation:
  ama: Maas J, Van Neerven J, Portal P. Conical square functions and non-tangential
    maximal functions with respect to the Gaussian measure. <i>Publicacions Matemàtiques</i>.
    2011;55(2):313-341. doi:<a href="https://doi.org/10.5565/PUBLMAT_55211_03  ">10.5565/PUBLMAT_55211_03 
    </a>
  apa: Maas, J., Van Neerven, J., &#38; Portal, P. (2011). Conical square functions
    and non-tangential maximal functions with respect to the Gaussian measure. <i>Publicacions
    Matemàtiques</i>. Universitat Autònoma de Barcelona, Departament de Matemàtique.
    <a href="https://doi.org/10.5565/PUBLMAT_55211_03  ">https://doi.org/10.5565/PUBLMAT_55211_03 
    </a>
  chicago: Maas, Jan, Jan Van Neerven, and Pierre Portal. “Conical Square Functions
    and Non-Tangential Maximal Functions with Respect to the Gaussian Measure.” <i>Publicacions
    Matemàtiques</i>. Universitat Autònoma de Barcelona, Departament de Matemàtique,
    2011. <a href="https://doi.org/10.5565/PUBLMAT_55211_03  ">https://doi.org/10.5565/PUBLMAT_55211_03 
    </a>.
  ieee: J. Maas, J. Van Neerven, and P. Portal, “Conical square functions and non-tangential
    maximal functions with respect to the Gaussian measure,” <i>Publicacions Matemàtiques</i>,
    vol. 55, no. 2. Universitat Autònoma de Barcelona, Departament de Matemàtique,
    pp. 313–341, 2011.
  ista: Maas J, Van Neerven J, Portal P. 2011. Conical square functions and non-tangential
    maximal functions with respect to the Gaussian measure. Publicacions Matemàtiques.
    55(2), 313–341.
  mla: Maas, Jan, et al. “Conical Square Functions and Non-Tangential Maximal Functions
    with Respect to the Gaussian Measure.” <i>Publicacions Matemàtiques</i>, vol.
    55, no. 2, Universitat Autònoma de Barcelona, Departament de Matemàtique, 2011,
    pp. 313–41, doi:<a href="https://doi.org/10.5565/PUBLMAT_55211_03  ">10.5565/PUBLMAT_55211_03 
    </a>.
  short: J. Maas, J. Van Neerven, P. Portal, Publicacions Matemàtiques 55 (2011) 313–341.
date_created: 2018-12-11T11:55:50Z
date_published: 2011-07-01T00:00:00Z
date_updated: 2021-01-12T06:55:26Z
day: '01'
doi: "10.5565/PUBLMAT_55211_03\t "
extern: 1
fulldoi: "https://doi.org/10.5565/PUBLMAT_55211_03\t "
intvolume: '        55'
issue: '2'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1003.4092
month: '07'
oa: 1
page: 313 - 341
publication: Publicacions Matemàtiques
publication_status: published
publisher: Universitat Autònoma de Barcelona, Departament de Matemàtique
publist_id: '4910'
quality_controlled: 0
status: public
title: Conical square functions and non-tangential maximal functions with respect
  to the Gaussian measure
type: journal_article
volume: 55
year: '2011'
...
---
_id: '2123'
abstract:
- lang: eng
  text: We prove a Trotter product formula for gradient flows in metric spaces. This
    result is applied to establish convergence in the L 2-Wasserstein metric of the
    splitting method for some Fokker-Planck equations and porous medium type equations
    perturbed by a potential.
acknowledgement: The second named author is supported by Rubicon subsidy 680-50-0901
  of the Netherlands Organisation for Scientific Research (NWO).
article_processing_charge: No
author:
- first_name: Philippe
  full_name: Clément, Philippe
  last_name: Clément
- first_name: Jan
  full_name: Maas, Jan
  id: 4C5696CE-F248-11E8-B48F-1D18A9856A87
  last_name: Maas
  orcid: 0000-0002-0845-1338
citation:
  ama: Clément P, Maas J. A Trotter product formula for gradient flows in metric spaces.
    <i>Journal of Evolution Equations</i>. 2011;11(2):405-427. doi:<a href="https://doi.org/10.1007/s00028-010-0096-5">10.1007/s00028-010-0096-5</a>
  apa: Clément, P., &#38; Maas, J. (2011). A Trotter product formula for gradient
    flows in metric spaces. <i>Journal of Evolution Equations</i>. Birkhäuser. <a
    href="https://doi.org/10.1007/s00028-010-0096-5">https://doi.org/10.1007/s00028-010-0096-5</a>
  chicago: Clément, Philippe, and Jan Maas. “A Trotter Product Formula for Gradient
    Flows in Metric Spaces.” <i>Journal of Evolution Equations</i>. Birkhäuser, 2011.
    <a href="https://doi.org/10.1007/s00028-010-0096-5">https://doi.org/10.1007/s00028-010-0096-5</a>.
  ieee: P. Clément and J. Maas, “A Trotter product formula for gradient flows in metric
    spaces,” <i>Journal of Evolution Equations</i>, vol. 11, no. 2. Birkhäuser, pp.
    405–427, 2011.
  ista: Clément P, Maas J. 2011. A Trotter product formula for gradient flows in metric
    spaces. Journal of Evolution Equations. 11(2), 405–427.
  mla: Clément, Philippe, and Jan Maas. “A Trotter Product Formula for Gradient Flows
    in Metric Spaces.” <i>Journal of Evolution Equations</i>, vol. 11, no. 2, Birkhäuser,
    2011, pp. 405–27, doi:<a href="https://doi.org/10.1007/s00028-010-0096-5">10.1007/s00028-010-0096-5</a>.
  short: P. Clément, J. Maas, Journal of Evolution Equations 11 (2011) 405–427.
date_created: 2018-12-11T11:55:51Z
date_published: 2011-01-21T00:00:00Z
date_updated: 2021-11-16T08:05:46Z
day: '21'
doi: 10.1007/s00028-010-0096-5
extern: '1'
fulldoi: https://doi.org/10.1007/s00028-010-0096-5
intvolume: '        11'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1005.0998
month: '01'
oa: 1
oa_version: None
page: 405 - 427
publication: Journal of Evolution Equations
publication_status: published
publisher: Birkhäuser
publist_id: '4911'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1007/s00028-012-0173-z
status: public
title: A Trotter product formula for gradient flows in metric spaces
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 11
year: '2011'
...
---
_id: '2126'
abstract:
- lang: eng
  text: |
    Let K be an irreducible and reversible Markov kernel on a finite set X. We construct a metric W on the set of probability measures on X and show that with respect to this metric, the law of the continuous time Markov chain evolves as the gradient flow of the entropy. This result is a discrete counterpart of the Wasserstein gradient flow interpretation of the heat flow in Rn by Jordan, Kinderlehrer and Otto (1998). The metric W is similar to, but different from, the L2-Wasserstein metric, and is defined via a discrete variant of the Benamou–Brenier formula.
acknowledgement: Supported by Rubicon subsidy 680-50-0901 of the Netherlands Organisation
  for Scientific Research (NWO)
author:
- first_name: Jan
  full_name: Jan Maas
  id: 4C5696CE-F248-11E8-B48F-1D18A9856A87
  last_name: Maas
  orcid: 0000-0002-0845-1338
citation:
  ama: Maas J. Gradient flows of the entropy for finite Markov chains. <i>Journal
    of Functional Analysis</i>. 2011;261(8):2250-2292. doi:<a href="https://doi.org/10.1016/j.jfa.2011.06.009
    ">10.1016/j.jfa.2011.06.009 </a>
  apa: Maas, J. (2011). Gradient flows of the entropy for finite Markov chains. <i>Journal
    of Functional Analysis</i>. Academic Press. <a href="https://doi.org/10.1016/j.jfa.2011.06.009
    ">https://doi.org/10.1016/j.jfa.2011.06.009 </a>
  chicago: Maas, Jan. “Gradient Flows of the Entropy for Finite Markov Chains.” <i>Journal
    of Functional Analysis</i>. Academic Press, 2011. <a href="https://doi.org/10.1016/j.jfa.2011.06.009
    ">https://doi.org/10.1016/j.jfa.2011.06.009 </a>.
  ieee: J. Maas, “Gradient flows of the entropy for finite Markov chains,” <i>Journal
    of Functional Analysis</i>, vol. 261, no. 8. Academic Press, pp. 2250–2292, 2011.
  ista: Maas J. 2011. Gradient flows of the entropy for finite Markov chains. Journal
    of Functional Analysis. 261(8), 2250–2292.
  mla: Maas, Jan. “Gradient Flows of the Entropy for Finite Markov Chains.” <i>Journal
    of Functional Analysis</i>, vol. 261, no. 8, Academic Press, 2011, pp. 2250–92,
    doi:<a href="https://doi.org/10.1016/j.jfa.2011.06.009 ">10.1016/j.jfa.2011.06.009
    </a>.
  short: J. Maas, Journal of Functional Analysis 261 (2011) 2250–2292.
date_created: 2018-12-11T11:55:51Z
date_published: 2011-03-04T00:00:00Z
date_updated: 2021-01-12T06:55:28Z
day: '04'
doi: '10.1016/j.jfa.2011.06.009 '
extern: 1
fulldoi: 'https://doi.org/10.1016/j.jfa.2011.06.009 '
intvolume: '       261'
issue: '8'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1102.5238
month: '03'
oa: 1
page: 2250 - 2292
publication: Journal of Functional Analysis
publication_status: published
publisher: Academic Press
publist_id: '4909'
quality_controlled: 0
status: public
title: Gradient flows of the entropy for finite Markov chains
type: journal_article
volume: 261
year: '2011'
...
---
_id: '2138'
abstract:
- lang: eng
  text: A (diatomic) shape resonance is a metastable state of a pair of colliding
    atoms quasi-bound by the centrifugal barrier imposed by the angular momentum involved
    in the collision. The temporary trapping of the atoms' scattering wavefunction
    corresponds to an enhanced atom pair density at low interatomic separations. This
    leads to larger overlap of the wavefunctions involved in a molecule formation
    process such as photoassociation, rendering the process more efficient. However,
    for an ensemble of atoms, the atom pair density will only be enhanced if the energy
    of the resonance comes close to the temperature of the atomic ensemble. Herein
    we explore the possibility of controlling the energy of a shape resonance by shifting
    it toward the temperature of atoms confined in a trap. The shifts are imparted
    by the interaction of non-resonant light with the anisotropic polarizability of
    the atom pair, which affects both the centrifugal barrier and the pair's rotational
    and vibrational levels. We find that at laser intensities of up to 5×109 W/cm2
    the pair density is increased by one order of magnitude for 87Rb atoms at 100μK
    and by two orders of magnitude for 88Sr atoms at 20μK.
acknowledgement: Financial support from the Deutsche Forschungsgemeinschaft (Grant
  No. KO 2301/2), by the Spanish project FIS2008-02380 (MICINN) as well as the Grants
  FQM-2445 and FQM-4643 (Junta de Andaluc´ıa), Campus de Excelencia Internacional
  Proyecto GENIL CEB09-0010
author:
- first_name: Ruzin
  full_name: Ağanoğlu, Ruzin
  last_name: Ağanoğlu
- first_name: Mikhail
  full_name: Mikhail Lemeshko
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Břetislav
  full_name: Friedrich, Břetislav
  last_name: Friedrich
- first_name: Rosario
  full_name: González-Férez, Rosario
  last_name: González Férez
- first_name: Christiane
  full_name: Koch, Christiane P
  last_name: Koch
citation:
  ama: Ağanoğlu R, Lemeshko M, Friedrich B, González Férez R, Koch C. Controlling
    a diatomic shape resonance with non-resonant light. <i>Unknown</i>. 2011.
  apa: Ağanoğlu, R., Lemeshko, M., Friedrich, B., González Férez, R., &#38; Koch,
    C. (2011). Controlling a diatomic shape resonance with non-resonant light. <i>Unknown</i>.
    ArXiv.
  chicago: Ağanoğlu, Ruzin, Mikhail Lemeshko, Břetislav Friedrich, Rosario González
    Férez, and Christiane Koch. “Controlling a Diatomic Shape Resonance with Non-Resonant
    Light.” <i>Unknown</i>. ArXiv, 2011.
  ieee: R. Ağanoğlu, M. Lemeshko, B. Friedrich, R. González Férez, and C. Koch, “Controlling
    a diatomic shape resonance with non-resonant light,” <i>Unknown</i>. ArXiv, 2011.
  ista: Ağanoğlu R, Lemeshko M, Friedrich B, González Férez R, Koch C. 2011. Controlling
    a diatomic shape resonance with non-resonant light. Unknown, .
  mla: Ağanoğlu, Ruzin, et al. “Controlling a Diatomic Shape Resonance with Non-Resonant
    Light.” <i>Unknown</i>, ArXiv, 2011.
  short: R. Ağanoğlu, M. Lemeshko, B. Friedrich, R. González Férez, C. Koch, Unknown
    (2011).
date_created: 2018-12-11T11:55:55Z
date_published: 2011-05-04T00:00:00Z
date_updated: 2021-01-12T06:55:32Z
day: '04'
extern: 1
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1105.0761
month: '05'
oa: 1
publication: Unknown
publication_status: published
publisher: ArXiv
publist_id: '4886'
quality_controlled: 0
status: public
title: Controlling a diatomic shape resonance with non-resonant light
type: preprint
year: '2011'
...
---
_id: '2198'
abstract:
- lang: eng
  text: We show that dressing polar molecules with a far-off-resonant optical field
    leads to new types of intermolecular potentials, which undergo a crossover from
    the inverse power to oscillating behavior depending on the intermolecular distance,
    and whose parameters can be tuned by varying the laser intensity and wavelength.
    We present analytic expressions for the potential energy surfaces, thereby providing
    direct access to the parameters of an optical field required to design intermolecular
    interactions experimentally.
author:
- first_name: Mikhail
  full_name: Mikhail Lemeshko
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
citation:
  ama: Lemeshko M. Shaping interactions between polar molecules with far-off-resonant
    light. <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>. 2011;83(5).
    doi:<a href="https://doi.org/10.1103/PhysRevA.83.051402">10.1103/PhysRevA.83.051402</a>
  apa: Lemeshko, M. (2011). Shaping interactions between polar molecules with far-off-resonant
    light. <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>. American
    Physical Society. <a href="https://doi.org/10.1103/PhysRevA.83.051402">https://doi.org/10.1103/PhysRevA.83.051402</a>
  chicago: Lemeshko, Mikhail. “Shaping Interactions between Polar Molecules with Far-off-Resonant
    Light.” <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>. American
    Physical Society, 2011. <a href="https://doi.org/10.1103/PhysRevA.83.051402">https://doi.org/10.1103/PhysRevA.83.051402</a>.
  ieee: M. Lemeshko, “Shaping interactions between polar molecules with far-off-resonant
    light,” <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>, vol.
    83, no. 5. American Physical Society, 2011.
  ista: Lemeshko M. 2011. Shaping interactions between polar molecules with far-off-resonant
    light. Physical Review A - Atomic, Molecular, and Optical Physics. 83(5).
  mla: Lemeshko, Mikhail. “Shaping Interactions between Polar Molecules with Far-off-Resonant
    Light.” <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>, vol.
    83, no. 5, American Physical Society, 2011, doi:<a href="https://doi.org/10.1103/PhysRevA.83.051402">10.1103/PhysRevA.83.051402</a>.
  short: M. Lemeshko, Physical Review A - Atomic, Molecular, and Optical Physics 83
    (2011).
date_created: 2018-12-11T11:56:17Z
date_published: 2011-05-27T00:00:00Z
date_updated: 2021-01-12T06:55:55Z
day: '27'
doi: 10.1103/PhysRevA.83.051402
extern: 1
fulldoi: https://doi.org/10.1103/PhysRevA.83.051402
intvolume: '        83'
issue: '5'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1104.1046
month: '05'
oa: 1
publication: Physical Review A - Atomic, Molecular, and Optical Physics
publication_status: published
publisher: American Physical Society
publist_id: '4775'
quality_controlled: 0
status: public
title: Shaping interactions between polar molecules with far-off-resonant light
type: journal_article
volume: 83
year: '2011'
...
---
_id: '14305'
abstract:
- lang: eng
  text: Understanding the mechanism of protein folding requires a detailed knowledge
    of the structural properties of the barriers separating unfolded from native conformations.
    The S-peptide from ribonuclease S forms its α-helical structure only upon binding
    to the folded S-protein. We characterized the transition state for this binding-induced
    folding reaction at high resolution by determining the effect of site-specific
    backbone thioxylation and side-chain modifications on the kinetics and thermodynamics
    of the reaction, which allows us to monitor formation of backbone hydrogen bonds
    and side-chain interactions in the transition state. The experiments reveal that
    α-helical structure in the S-peptide is absent in the transition state of binding.
    Recognition between the unfolded S-peptide and the S-protein is mediated by loosely
    packed hydrophobic side-chain interactions in two well defined regions on the
    S-peptide. Close packing and helix formation occurs rapidly after binding. Introducing
    hydrophobic residues at positions outside the recognition region can drastically
    slow down association.
article_processing_charge: No
article_type: original
author:
- first_name: Annett
  full_name: Bachmann, Annett
  last_name: Bachmann
- first_name: Dirk
  full_name: Wildemann, Dirk
  last_name: Wildemann
- first_name: Florian M
  full_name: Praetorius, Florian M
  id: dfec9381-4341-11ee-8fd8-faa02bba7d62
  last_name: Praetorius
- first_name: Gunter
  full_name: Fischer, Gunter
  last_name: Fischer
- first_name: Thomas
  full_name: Kiefhaber, Thomas
  last_name: Kiefhaber
citation:
  ama: Bachmann A, Wildemann D, Praetorius FM, Fischer G, Kiefhaber T. Mapping backbone
    and side-chain interactions in the transition state of a coupled protein folding
    and binding reaction. <i>PNAS</i>. 2011;108(10):3952-3957. doi:<a href="https://doi.org/10.1073/pnas.1012668108">10.1073/pnas.1012668108</a>
  apa: Bachmann, A., Wildemann, D., Praetorius, F. M., Fischer, G., &#38; Kiefhaber,
    T. (2011). Mapping backbone and side-chain interactions in the transition state
    of a coupled protein folding and binding reaction. <i>PNAS</i>. Proceedings of
    the National Academy of Sciences. <a href="https://doi.org/10.1073/pnas.1012668108">https://doi.org/10.1073/pnas.1012668108</a>
  chicago: Bachmann, Annett, Dirk Wildemann, Florian M Praetorius, Gunter Fischer,
    and Thomas Kiefhaber. “Mapping Backbone and Side-Chain Interactions in the Transition
    State of a Coupled Protein Folding and Binding Reaction.” <i>PNAS</i>. Proceedings
    of the National Academy of Sciences, 2011. <a href="https://doi.org/10.1073/pnas.1012668108">https://doi.org/10.1073/pnas.1012668108</a>.
  ieee: A. Bachmann, D. Wildemann, F. M. Praetorius, G. Fischer, and T. Kiefhaber,
    “Mapping backbone and side-chain interactions in the transition state of a coupled
    protein folding and binding reaction,” <i>PNAS</i>, vol. 108, no. 10. Proceedings
    of the National Academy of Sciences, pp. 3952–3957, 2011.
  ista: Bachmann A, Wildemann D, Praetorius FM, Fischer G, Kiefhaber T. 2011. Mapping
    backbone and side-chain interactions in the transition state of a coupled protein
    folding and binding reaction. PNAS. 108(10), 3952–3957.
  mla: Bachmann, Annett, et al. “Mapping Backbone and Side-Chain Interactions in the
    Transition State of a Coupled Protein Folding and Binding Reaction.” <i>PNAS</i>,
    vol. 108, no. 10, Proceedings of the National Academy of Sciences, 2011, pp. 3952–57,
    doi:<a href="https://doi.org/10.1073/pnas.1012668108">10.1073/pnas.1012668108</a>.
  short: A. Bachmann, D. Wildemann, F.M. Praetorius, G. Fischer, T. Kiefhaber, PNAS
    108 (2011) 3952–3957.
date_created: 2023-09-06T12:54:36Z
date_published: 2011-01-12T00:00:00Z
date_updated: 2023-11-07T11:50:29Z
day: '12'
doi: 10.1073/pnas.1012668108
extern: '1'
external_id:
  pmid:
  - '21325613'
fulldoi: https://doi.org/10.1073/pnas.1012668108
intvolume: '       108'
issue: '10'
keyword:
- Multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1073/pnas.1012668108
month: '01'
oa: 1
oa_version: Published Version
page: 3952-3957
pmid: 1
publication: PNAS
publication_identifier:
  eissn:
  - 1091-6490
  issn:
  - 0027-8424
publication_status: published
publisher: Proceedings of the National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mapping backbone and side-chain interactions in the transition state of a coupled
  protein folding and binding reaction
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 108
year: '2011'
...
---
_id: '1467'
abstract:
- lang: eng
  text: We propose a general conjecture for the mixed Hodge polynomial of the generic
    character varieties of representations of the fundamental group of a Riemann surface
    of genus g to GLn(C) with fixed generic semisimple conjugacy classes at k punctures.
    This conjecture generalizes the Cauchy identity for Macdonald polynomials and
    is a common generalization of two formulas that we prove in this paper. The first
    is a formula for the E-polynomial of these character varieties which we obtain
    using the character table of GLn(Fq). We use this formula to compute the Euler
    characteristic of character varieties. The second formula gives the Poincaré polynomial
    of certain associated quiver varieties which we obtain using the character table
    of gln(Fq). In the last main result we prove that the Poincaré polynomials of
    the quiver varieties equal certain multiplicities in the tensor product of irreducible
    characters of GLn(Fq). As a consequence we find a curious connection between Kac-Moody
    algebras associated with comet-shaped, and typically wild, quivers and the representation
    theory of GLn(Fq).
acknowledgement: |-
  Hausel’s work was supported by National Science Foundation grants DMS-0305505 and DMS-0604775, by an Alfred Sloan Fellowship, and by a Royal Society University Research Fellowship. Letellier’s work supported by Agence Nationale de la Recherche grant ANR-09-JCJC-0102-01.
  Rodriguez-Villegas’s work supported by National Science Foundation grant DMS-0200605, by an FRA from the University of Texas at Austin, by EPSRC grant EP/G027110/1, by visiting fellowships at All Souls and Wadham Colleges in Oxford, and by a Research Scholarship from the Clay Mathematical Institute.
author:
- first_name: Tamas
  full_name: Tamas Hausel
  id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
  last_name: Hausel
- first_name: Emmanuel
  full_name: Letellier, Emmanuel
  last_name: Letellier
- first_name: Fernando
  full_name: Rodríguez Villegas, Fernando
  last_name: Rodríguez Villegas
citation:
  ama: Hausel T, Letellier E, Rodríguez Villegas F. Arithmetic harmonic analysis on
    character and quiver varieties. <i>Duke Mathematical Journal</i>. 2011;160(2):323-400.
    doi:<a href="https://doi.org/10.1215/00127094-1444258">10.1215/00127094-1444258</a>
  apa: Hausel, T., Letellier, E., &#38; Rodríguez Villegas, F. (2011). Arithmetic
    harmonic analysis on character and quiver varieties. <i>Duke Mathematical Journal</i>.
    Duke University Press. <a href="https://doi.org/10.1215/00127094-1444258">https://doi.org/10.1215/00127094-1444258</a>
  chicago: Hausel, Tamás, Emmanuel Letellier, and Fernando Rodríguez Villegas. “Arithmetic
    Harmonic Analysis on Character and Quiver Varieties.” <i>Duke Mathematical Journal</i>.
    Duke University Press, 2011. <a href="https://doi.org/10.1215/00127094-1444258">https://doi.org/10.1215/00127094-1444258</a>.
  ieee: T. Hausel, E. Letellier, and F. Rodríguez Villegas, “Arithmetic harmonic analysis
    on character and quiver varieties,” <i>Duke Mathematical Journal</i>, vol. 160,
    no. 2. Duke University Press, pp. 323–400, 2011.
  ista: Hausel T, Letellier E, Rodríguez Villegas F. 2011. Arithmetic harmonic analysis
    on character and quiver varieties. Duke Mathematical Journal. 160(2), 323–400.
  mla: Hausel, Tamás, et al. “Arithmetic Harmonic Analysis on Character and Quiver
    Varieties.” <i>Duke Mathematical Journal</i>, vol. 160, no. 2, Duke University
    Press, 2011, pp. 323–400, doi:<a href="https://doi.org/10.1215/00127094-1444258">10.1215/00127094-1444258</a>.
  short: T. Hausel, E. Letellier, F. Rodríguez Villegas, Duke Mathematical Journal
    160 (2011) 323–400.
date_created: 2018-12-11T11:52:11Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2021-01-12T06:50:56Z
day: '01'
doi: 10.1215/00127094-1444258
extern: 1
fulldoi: https://doi.org/10.1215/00127094-1444258
intvolume: '       160'
issue: '2'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/0810.2076
month: '01'
oa: 1
page: 323 - 400
publication: Duke Mathematical Journal
publication_status: published
publisher: Duke University Press
publist_id: '5728'
quality_controlled: 0
status: public
title: Arithmetic harmonic analysis on character and quiver varieties
type: journal_article
volume: 160
year: '2011'
...
---
_id: '1863'
abstract:
- lang: eng
  text: The Levene model is the simplest mathematical model to describe the evolution
    of gene frequencies in spatially subdivided populations. It provides insight into
    how locally varying selection promotes a population’s genetic diversity. Despite
    its simplicity, interesting problems have remained unsolved even in the diallelic
    case. In this paper we answer an open problem by establishing that for two alleles
    at one locus and J demes, up to 2J−1 polymorphic equilibria may coexist. We first
    present a proof for the case of stable monomorphisms and then show that the result
    also holds for protected alleles. These findings allow us to prove that any odd
    number (up to 2J−1) of equilibria is possible, before we extend the proof to even
    numbers. We conclude with some numerical results and show that for J&gt;2, the
    proportion of parameter space affording this maximum is extremely small.
acknowledgement: FWF 21305
author:
- first_name: Sebastian
  full_name: Sebastian Novak
  id: 461468AE-F248-11E8-B48F-1D18A9856A87
  last_name: Novak
citation:
  ama: Novak S. The number of equilibria in the diallelic Levene model with multiple
    demes. <i>Theoretical Population Biology</i>. 2011;79(3):97-101. doi:<a href="https://doi.org/10.1016/j.tpb.2010.12.002">10.1016/j.tpb.2010.12.002</a>
  apa: Novak, S. (2011). The number of equilibria in the diallelic Levene model with
    multiple demes. <i>Theoretical Population Biology</i>. Academic Press. <a href="https://doi.org/10.1016/j.tpb.2010.12.002">https://doi.org/10.1016/j.tpb.2010.12.002</a>
  chicago: Novak, Sebastian. “The Number of Equilibria in the Diallelic Levene Model
    with Multiple Demes.” <i>Theoretical Population Biology</i>. Academic Press, 2011.
    <a href="https://doi.org/10.1016/j.tpb.2010.12.002">https://doi.org/10.1016/j.tpb.2010.12.002</a>.
  ieee: S. Novak, “The number of equilibria in the diallelic Levene model with multiple
    demes,” <i>Theoretical Population Biology</i>, vol. 79, no. 3. Academic Press,
    pp. 97–101, 2011.
  ista: Novak S. 2011. The number of equilibria in the diallelic Levene model with
    multiple demes. Theoretical Population Biology. 79(3), 97–101.
  mla: Novak, Sebastian. “The Number of Equilibria in the Diallelic Levene Model with
    Multiple Demes.” <i>Theoretical Population Biology</i>, vol. 79, no. 3, Academic
    Press, 2011, pp. 97–101, doi:<a href="https://doi.org/10.1016/j.tpb.2010.12.002">10.1016/j.tpb.2010.12.002</a>.
  short: S. Novak, Theoretical Population Biology 79 (2011) 97–101.
date_created: 2018-12-11T11:54:25Z
date_published: 2011-05-01T00:00:00Z
date_updated: 2021-01-12T06:53:42Z
day: '01'
doi: 10.1016/j.tpb.2010.12.002
extern: 1
fulldoi: https://doi.org/10.1016/j.tpb.2010.12.002
intvolume: '        79'
issue: '3'
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '05'
page: 97 - 101
publication: Theoretical Population Biology
publication_status: published
publisher: Academic Press
publist_id: '5236'
quality_controlled: 0
status: public
title: The number of equilibria in the diallelic Levene model with multiple demes
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
volume: 79
year: '2011'
...
---
_id: '1973'
abstract:
- lang: eng
  text: Complex I is the first and largest enzyme of the respiratory chain, coupling
    electron transfer between NADH and ubiquinone to the translocation of four protons
    across the membrane. It has a central role in cellular energy production and has
    been implicated in many human neurodegenerative diseases. The L-shaped enzyme
    consists of hydrophilic and membrane domains. Previously, we determined the structure
    of the hydrophilic domain. Here we report the crystal structure of the Esherichia
    coli complex I membrane domain at 3.0 Ã. resolution. It includes six subunits,
    NuoL, NuoM, NuoN, NuoA, NuoJ and NuoK, with 55 transmembrane helices. The fold
    of the homologous antiporter-like subunits L, M and N is novel, with two inverted
    structural repeats of five transmembrane helices arranged, unusually, face-to-back.
    Each repeat includes a discontinuous transmembrane helix and forms half of a channel
    across the membrane. A network of conserved polar residues connects the two half-channels,
    completing the proton translocation pathway. Unexpectedly, lysines rather than
    carboxylate residues act as the main elements of the proton pump in these subunits.
    The fourth probable proton-translocation channel is at the interface of subunits
    N, K, J and A. The structure indicates that proton translocation in complex I,
    uniquely, involves coordinated conformational changes in six symmetrical structural
    elements.
acknowledgement: This work was funded by the Medical Research Council.
author:
- first_name: Rouslan
  full_name: Efremov, Rouslan G
  last_name: Efremov
- first_name: Leonid A
  full_name: Leonid Sazanov
  id: 338D39FE-F248-11E8-B48F-1D18A9856A87
  last_name: Sazanov
  orcid: 0000-0002-0977-7989
citation:
  ama: Efremov R, Sazanov LA. Structure of the membrane domain of respiratory complex
    i. <i>Nature</i>. 2011;476(7361):414-421. doi:<a href="https://doi.org/10.1038/nature10330">10.1038/nature10330</a>
  apa: Efremov, R., &#38; Sazanov, L. A. (2011). Structure of the membrane domain
    of respiratory complex i. <i>Nature</i>. Nature Publishing Group. <a href="https://doi.org/10.1038/nature10330">https://doi.org/10.1038/nature10330</a>
  chicago: Efremov, Rouslan, and Leonid A Sazanov. “Structure of the Membrane Domain
    of Respiratory Complex I.” <i>Nature</i>. Nature Publishing Group, 2011. <a href="https://doi.org/10.1038/nature10330">https://doi.org/10.1038/nature10330</a>.
  ieee: R. Efremov and L. A. Sazanov, “Structure of the membrane domain of respiratory
    complex i,” <i>Nature</i>, vol. 476, no. 7361. Nature Publishing Group, pp. 414–421,
    2011.
  ista: Efremov R, Sazanov LA. 2011. Structure of the membrane domain of respiratory
    complex i. Nature. 476(7361), 414–421.
  mla: Efremov, Rouslan, and Leonid A. Sazanov. “Structure of the Membrane Domain
    of Respiratory Complex I.” <i>Nature</i>, vol. 476, no. 7361, Nature Publishing
    Group, 2011, pp. 414–21, doi:<a href="https://doi.org/10.1038/nature10330">10.1038/nature10330</a>.
  short: R. Efremov, L.A. Sazanov, Nature 476 (2011) 414–421.
date_created: 2018-12-11T11:54:59Z
date_published: 2011-08-25T00:00:00Z
date_updated: 2021-01-12T06:54:26Z
day: '25'
doi: 10.1038/nature10330
extern: 1
fulldoi: https://doi.org/10.1038/nature10330
intvolume: '       476'
issue: '7361'
month: '08'
page: 414 - 421
publication: Nature
publication_status: published
publisher: Nature Publishing Group
publist_id: '5110'
quality_controlled: 0
status: public
title: Structure of the membrane domain of respiratory complex i
type: journal_article
volume: 476
year: '2011'
...
---
_id: '1974'
abstract:
- lang: eng
  text: Complex I is the first enzyme of the respiratory chain and plays a central
    role in cellular energy production. It has been implicated in many human neurodegenerative
    diseases, as well as in ageing. One of the biggest membrane protein complexes,
    it is an L-shaped assembly consisting of hydrophilic and membrane domains. Previously,
    we have determined structures of the hydrophilic domain in several redox states.
    Last year was marked by fascinating breakthroughs in the understanding of the
    complete structure. We described the architecture of the membrane domain and of
    the entire bacterial complex I. X-ray analysis of the larger mitochondrial enzyme
    has also been published. The core subunits of the bacterial and mitochondrial
    enzymes have remarkably similar structures. The proposed mechanism of coupling
    between electron transfer and proton translocation involves long-range conformational
    changes, coordinated in part by a long α-helix, akin to the coupling rod of a
    steam engine.
acknowledgement: The work in authors’ laboratory was funded by the Medical Research
  Council.
author:
- first_name: Rouslan
  full_name: Efremov, Rouslan G
  last_name: Efremov
- first_name: Leonid A
  full_name: Leonid Sazanov
  id: 338D39FE-F248-11E8-B48F-1D18A9856A87
  last_name: Sazanov
  orcid: 0000-0002-0977-7989
citation:
  ama: 'Efremov R, Sazanov LA. Respiratory complex I: “steam engine” of the cell?
    <i>Current Opinion in Structural Biology</i>. 2011;21(4):532-540. doi:<a href="https://doi.org/10.1016/j.sbi.2011.07.002">10.1016/j.sbi.2011.07.002</a>'
  apa: 'Efremov, R., &#38; Sazanov, L. A. (2011). Respiratory complex I: “steam engine”
    of the cell? <i>Current Opinion in Structural Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.sbi.2011.07.002">https://doi.org/10.1016/j.sbi.2011.07.002</a>'
  chicago: 'Efremov, Rouslan, and Leonid A Sazanov. “Respiratory Complex I: ‘steam
    Engine’ of the Cell?” <i>Current Opinion in Structural Biology</i>. Elsevier,
    2011. <a href="https://doi.org/10.1016/j.sbi.2011.07.002">https://doi.org/10.1016/j.sbi.2011.07.002</a>.'
  ieee: 'R. Efremov and L. A. Sazanov, “Respiratory complex I: ‘steam engine’ of the
    cell?,” <i>Current Opinion in Structural Biology</i>, vol. 21, no. 4. Elsevier,
    pp. 532–540, 2011.'
  ista: 'Efremov R, Sazanov LA. 2011. Respiratory complex I: ‘steam engine’ of the
    cell? Current Opinion in Structural Biology. 21(4), 532–540.'
  mla: 'Efremov, Rouslan, and Leonid A. Sazanov. “Respiratory Complex I: ‘steam Engine’
    of the Cell?” <i>Current Opinion in Structural Biology</i>, vol. 21, no. 4, Elsevier,
    2011, pp. 532–40, doi:<a href="https://doi.org/10.1016/j.sbi.2011.07.002">10.1016/j.sbi.2011.07.002</a>.'
  short: R. Efremov, L.A. Sazanov, Current Opinion in Structural Biology 21 (2011)
    532–540.
date_created: 2018-12-11T11:54:59Z
date_published: 2011-08-01T00:00:00Z
date_updated: 2021-01-12T06:54:27Z
day: '01'
doi: 10.1016/j.sbi.2011.07.002
extern: 1
fulldoi: https://doi.org/10.1016/j.sbi.2011.07.002
intvolume: '        21'
issue: '4'
month: '08'
page: 532 - 540
publication: Current Opinion in Structural Biology
publication_status: published
publisher: Elsevier
publist_id: '5111'
quality_controlled: 0
status: public
title: 'Respiratory complex I: ''steam engine'' of the cell?'
type: journal_article
volume: 21
year: '2011'
...
---
_id: '1975'
abstract:
- lang: eng
  text: 'Modern α-proteobacteria are thought to be closely related to the ancient
    symbiont of eukaryotes, an ancestor of mitochondria. Respiratory complex I from
    α-proteobacteria and mitochondria is well conserved at the level of the 14 &quot;core&quot;
    subunits, consistent with that notion. Mitochondrial complex I contains the core
    subunits, present in all species, and up to 31 &quot;supernumerary&quot; subunits,
    generally thought to have originated only within eukaryotic lineages. However,
    the full protein composition of an α-proteobacterial complex I has not been established
    previously. Here, we report the first purification and characterization of complex
    I from the α-proteobacterium Paracoccus denitrificans. Single particle electron
    microscopy shows that the complex has a well defined L-shape. Unexpectedly, in
    addition to the 14 core subunits, the enzyme also contains homologues of three
    supernumerary mitochondrial subunits as follows: B17.2, AQDQ/18, and 13 kDa (bovine
    nomenclature). This finding suggests that evolution of complex I via addition
    of supernumerary or &quot;accessory&quot; subunits started before the original
    endosymbiotic event that led to the creation of the eukaryotic cell. It also provides
    further confirmation that α-proteobacteria are the closest extant relatives of
    mitochondria.'
acknowledgement: 'This work was supported by the Medical Research Council. '
author:
- first_name: Chui
  full_name: Yip, Chui Y
  last_name: Yip
- first_name: Michael
  full_name: Harbour, Michael E
  last_name: Harbour
- first_name: Kamburapola
  full_name: Jayawardena, Kamburapola G
  last_name: Jayawardena
- first_name: Ian
  full_name: Fearnley, Ian M
  last_name: Fearnley
- first_name: Leonid A
  full_name: Leonid Sazanov
  id: 338D39FE-F248-11E8-B48F-1D18A9856A87
  last_name: Sazanov
  orcid: 0000-0002-0977-7989
citation:
  ama: Yip C, Harbour M, Jayawardena K, Fearnley I, Sazanov LA. Evolution of respiratory
    complex I &#38;quot;Supernumerary&#38;quot; subunits are present in the α-proteobacterial
    enzyme. <i>Journal of Biological Chemistry</i>. 2011;286(7):5023-5033. doi:<a
    href="https://doi.org/10.1074/jbc.M110.194993">10.1074/jbc.M110.194993</a>
  apa: Yip, C., Harbour, M., Jayawardena, K., Fearnley, I., &#38; Sazanov, L. A. (2011).
    Evolution of respiratory complex I &#38;quot;Supernumerary&#38;quot; subunits
    are present in the α-proteobacterial enzyme. <i>Journal of Biological Chemistry</i>.
    American Society for Biochemistry and Molecular Biology. <a href="https://doi.org/10.1074/jbc.M110.194993">https://doi.org/10.1074/jbc.M110.194993</a>
  chicago: Yip, Chui, Michael Harbour, Kamburapola Jayawardena, Ian Fearnley, and
    Leonid A Sazanov. “Evolution of Respiratory Complex I &#38;quot;Supernumerary&#38;quot;
    Subunits Are Present in the α-Proteobacterial Enzyme.” <i>Journal of Biological
    Chemistry</i>. American Society for Biochemistry and Molecular Biology, 2011.
    <a href="https://doi.org/10.1074/jbc.M110.194993">https://doi.org/10.1074/jbc.M110.194993</a>.
  ieee: C. Yip, M. Harbour, K. Jayawardena, I. Fearnley, and L. A. Sazanov, “Evolution
    of respiratory complex I &#38;quot;Supernumerary&#38;quot; subunits are present
    in the α-proteobacterial enzyme,” <i>Journal of Biological Chemistry</i>, vol.
    286, no. 7. American Society for Biochemistry and Molecular Biology, pp. 5023–5033,
    2011.
  ista: Yip C, Harbour M, Jayawardena K, Fearnley I, Sazanov LA. 2011. Evolution of
    respiratory complex I &#38;quot;Supernumerary&#38;quot; subunits are present in
    the α-proteobacterial enzyme. Journal of Biological Chemistry. 286(7), 5023–5033.
  mla: Yip, Chui, et al. “Evolution of Respiratory Complex I &#38;quot;Supernumerary&#38;quot;
    Subunits Are Present in the α-Proteobacterial Enzyme.” <i>Journal of Biological
    Chemistry</i>, vol. 286, no. 7, American Society for Biochemistry and Molecular
    Biology, 2011, pp. 5023–33, doi:<a href="https://doi.org/10.1074/jbc.M110.194993">10.1074/jbc.M110.194993</a>.
  short: C. Yip, M. Harbour, K. Jayawardena, I. Fearnley, L.A. Sazanov, Journal of
    Biological Chemistry 286 (2011) 5023–5033.
date_created: 2018-12-11T11:55:00Z
date_published: 2011-02-18T00:00:00Z
date_updated: 2021-01-12T06:54:27Z
day: '18'
doi: 10.1074/jbc.M110.194993
extern: 1
fulldoi: https://doi.org/10.1074/jbc.M110.194993
intvolume: '       286'
issue: '7'
month: '02'
page: 5023 - 5033
publication: Journal of Biological Chemistry
publication_status: published
publisher: American Society for Biochemistry and Molecular Biology
publist_id: '5112'
quality_controlled: 0
status: public
title: Evolution of respiratory complex I &quot;Supernumerary&quot; subunits are present
  in the α-proteobacterial enzyme
type: journal_article
volume: 286
year: '2011'
...
---
_id: '469'
abstract:
- lang: eng
  text: 'Spontaneous release of glutamate is important for maintaining synaptic strength
    and controlling spike timing in the brain. Mechanisms regulating spontaneous exocytosis
    remain poorly understood. Extracellular calcium concentration ([Ca2+]o) regulates
    Ca2+ entry through voltage-activated calcium channels (VACCs) and consequently
    is a pivotal determinant of action potential-evoked vesicle fusion. Extracellular
    Ca 2+ also enhances spontaneous release, but via unknown mechanisms. Here we report
    that external Ca2+ triggers spontaneous glutamate release more weakly than evoked
    release in mouse neocortical neurons. Blockade of VACCs has no effect on the spontaneous
    release rate or its dependence on [Ca2+]o. Intracellular [Ca2+] slowly increases
    in a minority of neurons following increases in [Ca2+]o. Furthermore, the enhancement
    of spontaneous release by extracellular calcium is insensitive to chelation of
    intracellular calcium by BAPTA. Activation of the calcium-sensing receptor (CaSR),
    a G-protein-coupled receptor present in nerve terminals, by several specific agonists
    increased spontaneous glutamate release. The frequency of spontaneous synaptic
    transmission was decreased in CaSR mutant neurons. The concentration-effect relationship
    for extracellular calcium regulation of spontaneous release was well described
    by a combination of CaSR-dependent and CaSR-independent mechanisms. Overall these
    results indicate that extracellular Ca2+ does not trigger spontaneous glutamate
    release by simply increasing calcium influx but stimulates CaSR and thereby promotes
    resting spontaneous glutamate release. '
article_processing_charge: No
author:
- first_name: Nicholas
  full_name: Vyleta, Nicholas
  id: 36C4978E-F248-11E8-B48F-1D18A9856A87
  last_name: Vyleta
- first_name: Stephen
  full_name: Smith, Stephen
  last_name: Smith
citation:
  ama: Vyleta N, Smith S. Spontaneous glutamate release is independent of calcium
    influx and tonically activated by the calcium-sensing receptor. <i>European Journal
    of Neuroscience</i>. 2011;31(12):4593-4606. doi:<a href="https://doi.org/10.1523/JNEUROSCI.6398-10.2011">10.1523/JNEUROSCI.6398-10.2011</a>
  apa: Vyleta, N., &#38; Smith, S. (2011). Spontaneous glutamate release is independent
    of calcium influx and tonically activated by the calcium-sensing receptor. <i>European
    Journal of Neuroscience</i>. Wiley-Blackwell. <a href="https://doi.org/10.1523/JNEUROSCI.6398-10.2011">https://doi.org/10.1523/JNEUROSCI.6398-10.2011</a>
  chicago: Vyleta, Nicholas, and Stephen Smith. “Spontaneous Glutamate Release Is
    Independent of Calcium Influx and Tonically Activated by the Calcium-Sensing Receptor.”
    <i>European Journal of Neuroscience</i>. Wiley-Blackwell, 2011. <a href="https://doi.org/10.1523/JNEUROSCI.6398-10.2011">https://doi.org/10.1523/JNEUROSCI.6398-10.2011</a>.
  ieee: N. Vyleta and S. Smith, “Spontaneous glutamate release is independent of calcium
    influx and tonically activated by the calcium-sensing receptor,” <i>European Journal
    of Neuroscience</i>, vol. 31, no. 12. Wiley-Blackwell, pp. 4593–4606, 2011.
  ista: Vyleta N, Smith S. 2011. Spontaneous glutamate release is independent of calcium
    influx and tonically activated by the calcium-sensing receptor. European Journal
    of Neuroscience. 31(12), 4593–4606.
  mla: Vyleta, Nicholas, and Stephen Smith. “Spontaneous Glutamate Release Is Independent
    of Calcium Influx and Tonically Activated by the Calcium-Sensing Receptor.” <i>European
    Journal of Neuroscience</i>, vol. 31, no. 12, Wiley-Blackwell, 2011, pp. 4593–606,
    doi:<a href="https://doi.org/10.1523/JNEUROSCI.6398-10.2011">10.1523/JNEUROSCI.6398-10.2011</a>.
  short: N. Vyleta, S. Smith, European Journal of Neuroscience 31 (2011) 4593–4606.
date_created: 2018-12-11T11:46:39Z
date_published: 2011-03-23T00:00:00Z
date_updated: 2025-09-30T09:25:10Z
day: '23'
department:
- _id: PeJo
doi: 10.1523/JNEUROSCI.6398-10.2011
external_id:
  isi:
  - '000288750700025'
fulldoi: https://doi.org/10.1523/JNEUROSCI.6398-10.2011
intvolume: '        31'
isi: 1
issue: '12'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3097128/
month: '03'
oa: 1
oa_version: Submitted Version
page: 4593 - 4606
publication: European Journal of Neuroscience
publication_status: published
publisher: Wiley-Blackwell
publist_id: '7353'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Spontaneous glutamate release is independent of calcium influx and tonically
  activated by the calcium-sensing receptor
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 31
year: '2011'
...
---
_id: '490'
abstract:
- lang: eng
  text: 'BioSig is an open source software library for biomedical signal processing.
    The aim of the BioSig project is to foster research in biomedical signal processing
    by providing free and open source software tools for many different application
    areas. Some of the areas where BioSig can be employed are neuroinformatics, brain-computer
    interfaces, neurophysiology, psychology, cardiovascular systems, and sleep research.
    Moreover, the analysis of biosignals such as the electroencephalogram (EEG), electrocorticogram
    (ECoG), electrocardiogram (ECG), electrooculogram (EOG), electromyogram (EMG),
    or respiration signals is a very relevant element of the BioSig project. Specifically,
    BioSig provides solutions for data acquisition, artifact processing, quality control,
    feature extraction, classification, modeling, and data visualization, to name
    a few. In this paper, we highlight several methods to help students and researchers
    to work more efficiently with biomedical signals. '
article_number: '935364'
article_processing_charge: No
author:
- first_name: Alois
  full_name: Schlögl, Alois
  id: 45BF87EE-F248-11E8-B48F-1D18A9856A87
  last_name: Schlögl
  orcid: 0000-0002-5621-8100
- first_name: Carmen
  full_name: Vidaurre, Carmen
  last_name: Vidaurre
- first_name: Tilmann
  full_name: Sander, Tilmann
  last_name: Sander
citation:
  ama: 'Schlögl A, Vidaurre C, Sander T. BioSig: The free and open source software
    library for biomedical signal processing. <i>Computational Intelligence and Neuroscience</i>.
    2011;2011. doi:<a href="https://doi.org/10.1155/2011/935364">10.1155/2011/935364</a>'
  apa: 'Schlögl, A., Vidaurre, C., &#38; Sander, T. (2011). BioSig: The free and open
    source software library for biomedical signal processing. <i>Computational Intelligence
    and Neuroscience</i>. Hindawi Publishing Corporation. <a href="https://doi.org/10.1155/2011/935364">https://doi.org/10.1155/2011/935364</a>'
  chicago: 'Schlögl, Alois, Carmen Vidaurre, and Tilmann Sander. “BioSig: The Free
    and Open Source Software Library for Biomedical Signal Processing.” <i>Computational
    Intelligence and Neuroscience</i>. Hindawi Publishing Corporation, 2011. <a href="https://doi.org/10.1155/2011/935364">https://doi.org/10.1155/2011/935364</a>.'
  ieee: 'A. Schlögl, C. Vidaurre, and T. Sander, “BioSig: The free and open source
    software library for biomedical signal processing,” <i>Computational Intelligence
    and Neuroscience</i>, vol. 2011. Hindawi Publishing Corporation, 2011.'
  ista: 'Schlögl A, Vidaurre C, Sander T. 2011. BioSig: The free and open source software
    library for biomedical signal processing. Computational Intelligence and Neuroscience.
    2011, 935364.'
  mla: 'Schlögl, Alois, et al. “BioSig: The Free and Open Source Software Library
    for Biomedical Signal Processing.” <i>Computational Intelligence and Neuroscience</i>,
    vol. 2011, 935364, Hindawi Publishing Corporation, 2011, doi:<a href="https://doi.org/10.1155/2011/935364">10.1155/2011/935364</a>.'
  short: A. Schlögl, C. Vidaurre, T. Sander, Computational Intelligence and Neuroscience
    2011 (2011).
corr_author: '1'
date_created: 2018-12-11T11:46:45Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2025-09-30T09:24:43Z
day: '01'
ddc:
- '005'
department:
- _id: ScienComp
- _id: PeJo
doi: 10.1155/2011/935364
external_id:
  isi:
  - '000208906100033'
file:
- access_level: open_access
  checksum: 8263bbf255171f2054f43f3db5f53b6e
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:07:44Z
  date_updated: 2020-07-14T12:46:35Z
  file_id: '4642'
  file_name: IST-2018-947-v1+1_2011_Schloegl_BioSig.pdf
  file_size: 2863551
  relation: main_file
file_date_updated: 2020-07-14T12:46:35Z
fulldoi: https://doi.org/10.1155/2011/935364
has_accepted_license: '1'
intvolume: '      2011'
isi: 1
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '01'
oa: 1
oa_version: Published Version
publication: Computational Intelligence and Neuroscience
publication_status: published
publisher: Hindawi Publishing Corporation
publist_id: '7330'
pubrep_id: '947'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'BioSig: The free and open source software library for biomedical signal processing'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 2011
year: '2011'
...
---
_id: '491'
abstract:
- lang: eng
  text: In their search for antigens, lymphocytes continuously shuttle among blood
    vessels, lymph vessels, and lymphatic tissues. Chemokines mediate entry of lymphocytes
    into lymphatic tissues, and sphingosine 1-phosphate (S1P) promotes localization
    of lymphocytes to the vasculature. Both signals are sensed through G protein-coupled
    receptors (GPCRs). Most GPCRs undergo ligand-dependent homologous receptor desensitization,
    a process that decreases their signaling output after previous exposure to high
    ligand concentration. Such desensitization can explain why lymphocytes do not
    take an intermediate position between two signals but rather oscillate between
    them. The desensitization of S1P receptor 1 (S1PR1) is mediated by GPCR kinase
    2 (GRK2). Deletion of GRK2 in lymphocytes compromises desensitization by high
    vascular S1P concentrations, thereby reducing responsiveness to the chemokine
    signal and trapping the cells in the vascular compartment. The desensitization
    kinetics of S1PR1 allows lymphocytes to dynamically shuttle between vasculature
    and lymphatic tissue, although the positional information in both compartments
    is static.
article_number: pe43
article_processing_charge: No
author:
- first_name: Alexander
  full_name: Eichner, Alexander
  id: 4DFA52AE-F248-11E8-B48F-1D18A9856A87
  last_name: Eichner
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
citation:
  ama: Eichner A, Sixt MK. Setting the clock for recirculating lymphocytes. <i>Science
    Signaling</i>. 2011;4(198). doi:<a href="https://doi.org/10.1126/scisignal.2002617">10.1126/scisignal.2002617</a>
  apa: Eichner, A., &#38; Sixt, M. K. (2011). Setting the clock for recirculating
    lymphocytes. <i>Science Signaling</i>. American Association for the Advancement
    of Science. <a href="https://doi.org/10.1126/scisignal.2002617">https://doi.org/10.1126/scisignal.2002617</a>
  chicago: Eichner, Alexander, and Michael K Sixt. “Setting the Clock for Recirculating
    Lymphocytes.” <i>Science Signaling</i>. American Association for the Advancement
    of Science, 2011. <a href="https://doi.org/10.1126/scisignal.2002617">https://doi.org/10.1126/scisignal.2002617</a>.
  ieee: A. Eichner and M. K. Sixt, “Setting the clock for recirculating lymphocytes,”
    <i>Science Signaling</i>, vol. 4, no. 198. American Association for the Advancement
    of Science, 2011.
  ista: Eichner A, Sixt MK. 2011. Setting the clock for recirculating lymphocytes.
    Science Signaling. 4(198), pe43.
  mla: Eichner, Alexander, and Michael K. Sixt. “Setting the Clock for Recirculating
    Lymphocytes.” <i>Science Signaling</i>, vol. 4, no. 198, pe43, American Association
    for the Advancement of Science, 2011, doi:<a href="https://doi.org/10.1126/scisignal.2002617">10.1126/scisignal.2002617</a>.
  short: A. Eichner, M.K. Sixt, Science Signaling 4 (2011).
corr_author: '1'
date_created: 2018-12-11T11:46:46Z
date_published: 2011-11-08T00:00:00Z
date_updated: 2025-09-30T09:24:17Z
day: '08'
department:
- _id: MiSi
doi: 10.1126/scisignal.2002617
external_id:
  isi:
  - '000296800500002'
fulldoi: https://doi.org/10.1126/scisignal.2002617
intvolume: '         4'
isi: 1
issue: '198'
language:
- iso: eng
month: '11'
oa_version: None
publication: Science Signaling
publication_status: published
publisher: American Association for the Advancement of Science
publist_id: '7329'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Setting the clock for recirculating lymphocytes
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 4
year: '2011'
...
---
_id: '518'
abstract:
- lang: eng
  text: Cancer stem cells or cancer initiating cells are believed to contribute to
    cancer recurrence after therapy. MicroRNAs (miRNAs) are short RNA molecules with
    fundamental roles in gene regulation. The role of miRNAs in cancer stem cells
    is only poorly understood. Here, we report miRNA expression profiles of glioblastoma
    stem cell-containing CD133 + cell populations. We find that miR-9, miR-9 * (referred
    to as miR-9/9 *), miR-17 and miR-106b are highly abundant in CD133 + cells. Furthermore,
    inhibition of miR-9/9 * or miR-17 leads to reduced neurosphere formation and stimulates
    cell differentiation. Calmodulin-binding transcription activator 1 (CAMTA1) is
    a putative transcription factor, which induces the expression of the anti-proliferative
    cardiac hormone natriuretic peptide A (NPPA). We identify CAMTA1 as an miR-9/9
    * and miR-17 target. CAMTA1 expression leads to reduced neurosphere formation
    and tumour growth in nude mice, suggesting that CAMTA1 can function as tumour
    suppressor. Consistently, CAMTA1 and NPPA expression correlate with patient survival.
    Our findings could provide a basis for novel strategies of glioblastoma therapy.
article_processing_charge: No
article_type: original
author:
- first_name: Daniel
  full_name: Schraivogel, Daniel
  last_name: Schraivogel
- first_name: Lasse
  full_name: Weinmann, Lasse
  last_name: Weinmann
- first_name: Dagmar
  full_name: Beier, Dagmar
  last_name: Beier
- first_name: Ghazaleh
  full_name: Tabatabai, Ghazaleh
  last_name: Tabatabai
- first_name: Alexander
  full_name: Eichner, Alexander
  id: 4DFA52AE-F248-11E8-B48F-1D18A9856A87
  last_name: Eichner
- first_name: Jia
  full_name: Zhu, Jia
  last_name: Zhu
- first_name: Martina
  full_name: Anton, Martina
  last_name: Anton
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
- first_name: Michael
  full_name: Weller, Michael
  last_name: Weller
- first_name: Christoph
  full_name: Beier, Christoph
  last_name: Beier
- first_name: Gunter
  full_name: Meister, Gunter
  last_name: Meister
citation:
  ama: Schraivogel D, Weinmann L, Beier D, et al. CAMTA1 is a novel tumour suppressor
    regulated by miR-9/9 * in glioblastoma stem cells. <i>EMBO Journal</i>. 2011;30(20):4309-4322.
    doi:<a href="https://doi.org/10.1038/emboj.2011.301">10.1038/emboj.2011.301</a>
  apa: Schraivogel, D., Weinmann, L., Beier, D., Tabatabai, G., Eichner, A., Zhu,
    J., … Meister, G. (2011). CAMTA1 is a novel tumour suppressor regulated by miR-9/9
    * in glioblastoma stem cells. <i>EMBO Journal</i>. Wiley-Blackwell. <a href="https://doi.org/10.1038/emboj.2011.301">https://doi.org/10.1038/emboj.2011.301</a>
  chicago: Schraivogel, Daniel, Lasse Weinmann, Dagmar Beier, Ghazaleh Tabatabai,
    Alexander Eichner, Jia Zhu, Martina Anton, et al. “CAMTA1 Is a Novel Tumour Suppressor
    Regulated by MiR-9/9 * in Glioblastoma Stem Cells.” <i>EMBO Journal</i>. Wiley-Blackwell,
    2011. <a href="https://doi.org/10.1038/emboj.2011.301">https://doi.org/10.1038/emboj.2011.301</a>.
  ieee: D. Schraivogel <i>et al.</i>, “CAMTA1 is a novel tumour suppressor regulated
    by miR-9/9 * in glioblastoma stem cells,” <i>EMBO Journal</i>, vol. 30, no. 20.
    Wiley-Blackwell, pp. 4309–4322, 2011.
  ista: Schraivogel D, Weinmann L, Beier D, Tabatabai G, Eichner A, Zhu J, Anton M,
    Sixt MK, Weller M, Beier C, Meister G. 2011. CAMTA1 is a novel tumour suppressor
    regulated by miR-9/9 * in glioblastoma stem cells. EMBO Journal. 30(20), 4309–4322.
  mla: Schraivogel, Daniel, et al. “CAMTA1 Is a Novel Tumour Suppressor Regulated
    by MiR-9/9 * in Glioblastoma Stem Cells.” <i>EMBO Journal</i>, vol. 30, no. 20,
    Wiley-Blackwell, 2011, pp. 4309–22, doi:<a href="https://doi.org/10.1038/emboj.2011.301">10.1038/emboj.2011.301</a>.
  short: D. Schraivogel, L. Weinmann, D. Beier, G. Tabatabai, A. Eichner, J. Zhu,
    M. Anton, M.K. Sixt, M. Weller, C. Beier, G. Meister, EMBO Journal 30 (2011) 4309–4322.
date_created: 2018-12-11T11:46:55Z
date_published: 2011-10-19T00:00:00Z
date_updated: 2025-09-30T09:23:51Z
day: '19'
department:
- _id: MiSi
doi: 10.1038/emboj.2011.301
external_id:
  isi:
  - '000296715800018'
  pmid:
  - '21857646'
fulldoi: https://doi.org/10.1038/emboj.2011.301
intvolume: '        30'
isi: 1
issue: '20'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3199389/
month: '10'
oa: 1
oa_version: Submitted Version
page: 4309 - 4322
pmid: 1
publication: EMBO Journal
publication_status: published
publisher: Wiley-Blackwell
publist_id: '7301'
quality_controlled: '1'
scopus_import: '1'
status: public
title: CAMTA1 is a novel tumour suppressor regulated by miR-9/9 * in glioblastoma
  stem cells
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 30
year: '2011'
...
