---
_id: '13409'
abstract:
- lang: eng
  text: The immobilization of molecular switches onto inorganic supports has recently
    become a hot topic as it can give rise to novel hybrid materials in which the
    properties of the two components are mutually enhanced. Even more attractive is
    the concept of “transferring” the switchable characteristics of single layers
    of organic molecules onto the underlying inorganic components, rendering them
    responsive to external stimuli as well. Of the various molecular switches studied,
    azobenzene (AB) has arguably attracted most attention due to its simple molecular
    structure, and because its “trigger” (light) is a noninvasive one, it can be delivered
    instantaneously, and into a precise location. In order to fully realize its potential,
    however, it is necessary to immobilize AB onto solid supports. It is the goal
    of this manuscript to comprehensively yet concisely review such hybrid systems
    which comprise AB forming well-defined self-assembled monolayers (SAMs) on planar
    and curved (colloidal and nanoporous) inorganic surfaces. I discuss methods to
    immobilize AB derivatives onto surfaces, strategies to ensure efficient AB isomerization,
    ways to monitor the switching process, properties of these switchable hybrid materials,
    and, last but not least, their emerging applications.
article_processing_charge: No
article_type: original
author:
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
citation:
  ama: Klajn R. Immobilized azobenzenes for the construction of photoresponsive materials.
    <i>Pure and Applied Chemistry</i>. 2010;82(12):2247-2279. doi:<a href="https://doi.org/10.1351/pac-con-10-09-04">10.1351/pac-con-10-09-04</a>
  apa: Klajn, R. (2010). Immobilized azobenzenes for the construction of photoresponsive
    materials. <i>Pure and Applied Chemistry</i>. De Gruyter. <a href="https://doi.org/10.1351/pac-con-10-09-04">https://doi.org/10.1351/pac-con-10-09-04</a>
  chicago: Klajn, Rafal. “Immobilized Azobenzenes for the Construction of Photoresponsive
    Materials.” <i>Pure and Applied Chemistry</i>. De Gruyter, 2010. <a href="https://doi.org/10.1351/pac-con-10-09-04">https://doi.org/10.1351/pac-con-10-09-04</a>.
  ieee: R. Klajn, “Immobilized azobenzenes for the construction of photoresponsive
    materials,” <i>Pure and Applied Chemistry</i>, vol. 82, no. 12. De Gruyter, pp.
    2247–2279, 2010.
  ista: Klajn R. 2010. Immobilized azobenzenes for the construction of photoresponsive
    materials. Pure and Applied Chemistry. 82(12), 2247–2279.
  mla: Klajn, Rafal. “Immobilized Azobenzenes for the Construction of Photoresponsive
    Materials.” <i>Pure and Applied Chemistry</i>, vol. 82, no. 12, De Gruyter, 2010,
    pp. 2247–79, doi:<a href="https://doi.org/10.1351/pac-con-10-09-04">10.1351/pac-con-10-09-04</a>.
  short: R. Klajn, Pure and Applied Chemistry 82 (2010) 2247–2279.
date_created: 2023-08-01T09:48:11Z
date_published: 2010-10-15T00:00:00Z
date_updated: 2024-10-14T12:21:48Z
day: '15'
doi: 10.1351/pac-con-10-09-04
extern: '1'
intvolume: '        82'
issue: '12'
keyword:
- General Chemical Engineering
- General Chemistry
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1351/pac-con-10-09-04
month: '10'
oa: 1
oa_version: Published Version
page: 2247-2279
publication: Pure and Applied Chemistry
publication_identifier:
  eissn:
  - 1365-3075
  issn:
  - 0033-4545
publication_status: published
publisher: De Gruyter
quality_controlled: '1'
scopus_import: '1'
status: public
title: Immobilized azobenzenes for the construction of photoresponsive materials
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 82
year: '2010'
...
---
_id: '13410'
abstract:
- lang: eng
  text: A range (Au, Pt, Pd) of metal nanoparticles (MNPs) has been prepared and functionalized
    with (a) redox-active stalks containing tetrathiafulvalene (TTF) units, (b) [2]pseudorotaxanes
    formed between these stalks and cyclobis(paraquat-p-phenylene) (CBPQT4+) rings,
    and (c) bistable [2]rotaxane molecules where the dumbbell component contains a
    1,5-dioxynaphthalene (DNP) unit, as well as a TTF unit, encircled by a CBPQT4+
    ring. It transpires that the molecules present in (a) and (c) and the supermolecules
    described in (b) retain their switching characteristics, previously observed in
    solution, when they are immobilized onto MNPs. Moreover, their oxidation potentials
    depend on the fraction, χ, of the molecules or supermolecules on the surface of
    the nanoparticles. A variation in χ affects the oxidation potentials of the TTF
    units to the extent that switching can be subjected to fine tuning as a result.
    Specifically, increasing χ results in positive shifts (i) in the oxidation potentials
    of the TTF unit in (a)−(c) and (ii) the reduction potentials of the CBPQT4+ rings
    in (c). These shifts can be attributed to an increase in the electrostatic potential
    surrounding the MNPs. Both the magnitude and the direction of these shifts are
    reproduced by a model, based on the Poisson−Boltzmann equation coupled with charge-regulating
    boundary conditions. Furthermore, the kinetics of relaxation from the metastable
    state coconformation (MSCC) to the ground-state coconformation (GSCC) of the bistable
    [2]rotaxane molecules also depends on χ, as well as on the nanoparticle diameter.
    Increasing either of these parameters accelerates the rate of relaxation from
    the MSCC to the GSCC. This rate is a function of (i) the activation energy for
    the relaxation process associated with the bistable [2]rotaxane molecules in solution
    and (ii) the electrostatic potential surrounding the MNPs. The electrostatic potential
    depends on (i) the diameter of the MNPs, (ii) the amount of the bistable [2]rotaxane
    molecules on the surface of the MNPs, and (iii) the equilibrium distribution of
    the CBPQT4+ rings between the DNP and TTF recognition sites in the GSCC. This
    electrostatic potential has also been quantified using the Poisson−Boltzmann equation,
    leading to faithful estimates of the rate constants.
article_processing_charge: No
article_type: original
author:
- first_name: Ali
  full_name: Coskun, Ali
  last_name: Coskun
- first_name: Paul J.
  full_name: Wesson, Paul J.
  last_name: Wesson
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
- first_name: Ali
  full_name: Trabolsi, Ali
  last_name: Trabolsi
- first_name: Lei
  full_name: Fang, Lei
  last_name: Fang
- first_name: Mark A.
  full_name: Olson, Mark A.
  last_name: Olson
- first_name: Sanjeev K.
  full_name: Dey, Sanjeev K.
  last_name: Dey
- first_name: Bartosz A.
  full_name: Grzybowski, Bartosz A.
  last_name: Grzybowski
- first_name: J. Fraser
  full_name: Stoddart, J. Fraser
  last_name: Stoddart
citation:
  ama: 'Coskun A, Wesson PJ, Klajn R, et al. Molecular-mechanical switching at the
    nanoparticle−solvent interface: Practice and theory. <i>Journal of the American
    Chemical Society</i>. 2010;132(12):4310-4320. doi:<a href="https://doi.org/10.1021/ja9102327">10.1021/ja9102327</a>'
  apa: 'Coskun, A., Wesson, P. J., Klajn, R., Trabolsi, A., Fang, L., Olson, M. A.,
    … Stoddart, J. F. (2010). Molecular-mechanical switching at the nanoparticle−solvent
    interface: Practice and theory. <i>Journal of the American Chemical Society</i>.
    American Chemical Society. <a href="https://doi.org/10.1021/ja9102327">https://doi.org/10.1021/ja9102327</a>'
  chicago: 'Coskun, Ali, Paul J. Wesson, Rafal Klajn, Ali Trabolsi, Lei Fang, Mark
    A. Olson, Sanjeev K. Dey, Bartosz A. Grzybowski, and J. Fraser Stoddart. “Molecular-Mechanical
    Switching at the Nanoparticle−solvent Interface: Practice and Theory.” <i>Journal
    of the American Chemical Society</i>. American Chemical Society, 2010. <a href="https://doi.org/10.1021/ja9102327">https://doi.org/10.1021/ja9102327</a>.'
  ieee: 'A. Coskun <i>et al.</i>, “Molecular-mechanical switching at the nanoparticle−solvent
    interface: Practice and theory,” <i>Journal of the American Chemical Society</i>,
    vol. 132, no. 12. American Chemical Society, pp. 4310–4320, 2010.'
  ista: 'Coskun A, Wesson PJ, Klajn R, Trabolsi A, Fang L, Olson MA, Dey SK, Grzybowski
    BA, Stoddart JF. 2010. Molecular-mechanical switching at the nanoparticle−solvent
    interface: Practice and theory. Journal of the American Chemical Society. 132(12),
    4310–4320.'
  mla: 'Coskun, Ali, et al. “Molecular-Mechanical Switching at the Nanoparticle−solvent
    Interface: Practice and Theory.” <i>Journal of the American Chemical Society</i>,
    vol. 132, no. 12, American Chemical Society, 2010, pp. 4310–20, doi:<a href="https://doi.org/10.1021/ja9102327">10.1021/ja9102327</a>.'
  short: A. Coskun, P.J. Wesson, R. Klajn, A. Trabolsi, L. Fang, M.A. Olson, S.K.
    Dey, B.A. Grzybowski, J.F. Stoddart, Journal of the American Chemical Society
    132 (2010) 4310–4320.
date_created: 2023-08-01T09:48:27Z
date_published: 2010-03-31T00:00:00Z
date_updated: 2023-08-08T08:00:31Z
day: '31'
doi: 10.1021/ja9102327
extern: '1'
external_id:
  pmid:
  - '20218598'
intvolume: '       132'
issue: '12'
keyword:
- Colloid and Surface Chemistry
- Biochemistry
- General Chemistry
- Catalysis
language:
- iso: eng
month: '03'
oa_version: None
page: 4310-4320
pmid: 1
publication: Journal of the American Chemical Society
publication_identifier:
  eissn:
  - 1520-5126
  issn:
  - 0002-7863
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Molecular-mechanical switching at the nanoparticle−solvent interface: Practice
  and theory'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 132
year: '2010'
...
---
_id: '13411'
abstract:
- lang: eng
  text: Photoresponsive gold nanoparticles dispersed in a solid/frozen matrix provide
    a basis for sensors that “remember” whether the sample has ever exceeded the melting
    temperature of the matrix. The operation of these sensors rests on the ability
    to photoinduce metastable electric dipoles on NP surfaces – upon melting, these
    dipoles drive NP aggregation, precipitation, and crosslinking. These events are
    manifested by a pronounced color change.
article_processing_charge: No
article_type: original
author:
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
- first_name: Kevin P.
  full_name: Browne, Kevin P.
  last_name: Browne
- first_name: Siowling
  full_name: Soh, Siowling
  last_name: Soh
- first_name: Bartosz A.
  full_name: Grzybowski, Bartosz A.
  last_name: Grzybowski
citation:
  ama: Klajn R, Browne KP, Soh S, Grzybowski BA. Nanoparticles that “remember” temperature.
    <i>Small</i>. 2010;6(13):1385-1387. doi:<a href="https://doi.org/10.1002/smll.200902272">10.1002/smll.200902272</a>
  apa: Klajn, R., Browne, K. P., Soh, S., &#38; Grzybowski, B. A. (2010). Nanoparticles
    that “remember” temperature. <i>Small</i>. Wiley. <a href="https://doi.org/10.1002/smll.200902272">https://doi.org/10.1002/smll.200902272</a>
  chicago: Klajn, Rafal, Kevin P. Browne, Siowling Soh, and Bartosz A. Grzybowski.
    “Nanoparticles That ‘Remember’ Temperature.” <i>Small</i>. Wiley, 2010. <a href="https://doi.org/10.1002/smll.200902272">https://doi.org/10.1002/smll.200902272</a>.
  ieee: R. Klajn, K. P. Browne, S. Soh, and B. A. Grzybowski, “Nanoparticles that
    ‘remember’ temperature,” <i>Small</i>, vol. 6, no. 13. Wiley, pp. 1385–1387, 2010.
  ista: Klajn R, Browne KP, Soh S, Grzybowski BA. 2010. Nanoparticles that “remember”
    temperature. Small. 6(13), 1385–1387.
  mla: Klajn, Rafal, et al. “Nanoparticles That ‘Remember’ Temperature.” <i>Small</i>,
    vol. 6, no. 13, Wiley, 2010, pp. 1385–87, doi:<a href="https://doi.org/10.1002/smll.200902272">10.1002/smll.200902272</a>.
  short: R. Klajn, K.P. Browne, S. Soh, B.A. Grzybowski, Small 6 (2010) 1385–1387.
date_created: 2023-08-01T09:48:38Z
date_published: 2010-07-05T00:00:00Z
date_updated: 2023-08-08T08:15:25Z
day: '05'
doi: 10.1002/smll.200902272
extern: '1'
external_id:
  pmid:
  - '20521264'
intvolume: '         6'
issue: '13'
keyword:
- Biomaterials
- Biotechnology
- General Materials Science
- General Chemistry
language:
- iso: eng
month: '07'
oa_version: None
page: 1385-1387
pmid: 1
publication: Small
publication_identifier:
  eissn:
  - 1613-6829
  issn:
  - 1613-6810
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Nanoparticles that “remember” temperature
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6
year: '2010'
...
---
_id: '13412'
abstract:
- lang: eng
  text: Nanoparticles (NPs) and molecular/supramolecular switches have attracted considerable
    interest during the past decade on account of their unique properties and prominent
    roles in the fields of organic chemistry and materials science. Materials derived
    from the combination of these two components are now emerging in the literature.
    This critical review evaluates materials which comprise NPs functionalised with
    well-defined self-assembled monolayers of molecular and supramolecular switches.
    We draw attention to the fact that immobilisation of switches on NPs does not,
    in general, hamper their switching ability, although it can impart new properties
    on the supporting particles. This premise leads us to the discussion of systems
    in which switching on the surfaces of NPs can be used to modulate reversibly a
    range of NP properties—optical, fluorescent, electrical, magnetic—as well as the
    controlled release of small molecules. Finally, we discuss examples in which molecular
    switches direct reversible self-assembly of NPs (308 references).
article_processing_charge: No
article_type: original
author:
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
- first_name: J. Fraser
  full_name: Stoddart, J. Fraser
  last_name: Stoddart
- first_name: Bartosz A.
  full_name: Grzybowski, Bartosz A.
  last_name: Grzybowski
citation:
  ama: Klajn R, Stoddart JF, Grzybowski BA. Nanoparticles functionalised with reversible
    molecular and supramolecular switches. <i>Chemical Society Reviews</i>. 2010;39(6):2203-2237.
    doi:<a href="https://doi.org/10.1039/b920377j">10.1039/b920377j</a>
  apa: Klajn, R., Stoddart, J. F., &#38; Grzybowski, B. A. (2010). Nanoparticles functionalised
    with reversible molecular and supramolecular switches. <i>Chemical Society Reviews</i>.
    Royal Society of Chemistry. <a href="https://doi.org/10.1039/b920377j">https://doi.org/10.1039/b920377j</a>
  chicago: Klajn, Rafal, J. Fraser Stoddart, and Bartosz A. Grzybowski. “Nanoparticles
    Functionalised with Reversible Molecular and Supramolecular Switches.” <i>Chemical
    Society Reviews</i>. Royal Society of Chemistry, 2010. <a href="https://doi.org/10.1039/b920377j">https://doi.org/10.1039/b920377j</a>.
  ieee: R. Klajn, J. F. Stoddart, and B. A. Grzybowski, “Nanoparticles functionalised
    with reversible molecular and supramolecular switches,” <i>Chemical Society Reviews</i>,
    vol. 39, no. 6. Royal Society of Chemistry, pp. 2203–2237, 2010.
  ista: Klajn R, Stoddart JF, Grzybowski BA. 2010. Nanoparticles functionalised with
    reversible molecular and supramolecular switches. Chemical Society Reviews. 39(6),
    2203–2237.
  mla: Klajn, Rafal, et al. “Nanoparticles Functionalised with Reversible Molecular
    and Supramolecular Switches.” <i>Chemical Society Reviews</i>, vol. 39, no. 6,
    Royal Society of Chemistry, 2010, pp. 2203–37, doi:<a href="https://doi.org/10.1039/b920377j">10.1039/b920377j</a>.
  short: R. Klajn, J.F. Stoddart, B.A. Grzybowski, Chemical Society Reviews 39 (2010)
    2203–2237.
date_created: 2023-08-01T09:49:07Z
date_published: 2010-04-21T00:00:00Z
date_updated: 2023-08-08T08:19:00Z
day: '21'
doi: 10.1039/b920377j
extern: '1'
external_id:
  pmid:
  - '20407689'
intvolume: '        39'
issue: '6'
keyword:
- General Chemistry
language:
- iso: eng
month: '04'
oa_version: None
page: 2203-2237
pmid: 1
publication: Chemical Society Reviews
publication_identifier:
  eissn:
  - 1460-4744
  issn:
  - 0306-0012
publication_status: published
publisher: Royal Society of Chemistry
quality_controlled: '1'
scopus_import: '1'
status: public
title: Nanoparticles functionalised with reversible molecular and supramolecular switches
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 39
year: '2010'
...
---
_id: '1465'
abstract:
- lang: eng
  text: We prove a generating function formula for the Betti numbers of Nakajima quiver
    varieties. We prove that it is a q-deformation of the Weyl-Kac character formula.
    In particular this implies that the constant term of the polynomial counting the
    number of absolutely indecomposable representations of a quiver equals the multiplicity
    of a certain weight in the corresponding Kac-Moody algebra, which was conjectured
    by Kac in 1982.
acknowledgement: This work has been supported by a Royal Society University Research
  Fellowship, NSF grants DMS-0305505 and DMS-0604775 and an Alfred Sloan Fellowship
  2005-2007.
author:
- first_name: Tamas
  full_name: Tamas Hausel
  id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
  last_name: Hausel
citation:
  ama: Hausel T. Kac’s conjecture from Nakajima quiver varieties. <i>Inventiones Mathematicae</i>.
    2010;181(1):21-37. doi:<a href="https://doi.org/10.1007/s00222-010-0241-3">10.1007/s00222-010-0241-3</a>
  apa: Hausel, T. (2010). Kac’s conjecture from Nakajima quiver varieties. <i>Inventiones
    Mathematicae</i>. Springer. <a href="https://doi.org/10.1007/s00222-010-0241-3">https://doi.org/10.1007/s00222-010-0241-3</a>
  chicago: Hausel, Tamás. “Kac’s Conjecture from Nakajima Quiver Varieties.” <i>Inventiones
    Mathematicae</i>. Springer, 2010. <a href="https://doi.org/10.1007/s00222-010-0241-3">https://doi.org/10.1007/s00222-010-0241-3</a>.
  ieee: T. Hausel, “Kac’s conjecture from Nakajima quiver varieties,” <i>Inventiones
    Mathematicae</i>, vol. 181, no. 1. Springer, pp. 21–37, 2010.
  ista: Hausel T. 2010. Kac’s conjecture from Nakajima quiver varieties. Inventiones
    Mathematicae. 181(1), 21–37.
  mla: Hausel, Tamás. “Kac’s Conjecture from Nakajima Quiver Varieties.” <i>Inventiones
    Mathematicae</i>, vol. 181, no. 1, Springer, 2010, pp. 21–37, doi:<a href="https://doi.org/10.1007/s00222-010-0241-3">10.1007/s00222-010-0241-3</a>.
  short: T. Hausel, Inventiones Mathematicae 181 (2010) 21–37.
date_created: 2018-12-11T11:52:11Z
date_published: 2010-07-01T00:00:00Z
date_updated: 2021-01-12T06:50:56Z
day: '01'
doi: 10.1007/s00222-010-0241-3
extern: 1
intvolume: '       181'
issue: '1'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/0811.1569
month: '07'
oa: 1
page: 21 - 37
publication: Inventiones Mathematicae
publication_status: published
publisher: Springer
publist_id: '5730'
quality_controlled: 0
status: public
title: Kac's conjecture from Nakajima quiver varieties
type: journal_article
volume: 181
year: '2010'
...
---
_id: '1466'
abstract:
- lang: eng
  text: In Hausel et al. (2008) [10] we presented a conjecture generalizing the Cauchy
    formula for Macdonald polynomial. This conjecture encodes the mixed Hodge polynomials
    of the character varieties of representations of the fundamental group of a punctured
    Riemann surface of genus g. We proved several results which support this conjecture.
    Here we announce new results which are consequences of those in Hausel et al.
    (2008) [10].
author:
- first_name: Tamas
  full_name: Tamas Hausel
  id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
  last_name: Hausel
- first_name: Emmanuel
  full_name: Letellier, Emmanuel
  last_name: Letellier
- first_name: Fernando
  full_name: Rodríguez Villegas, Fernando
  last_name: Rodríguez Villegas
citation:
  ama: Hausel T, Letellier E, Rodríguez Villegas F. Topology of character varieties
    and representations of quivers. <i>Comptes Rendus Mathematique</i>. 2010;348(3-4):131-135.
    doi:<a href="https://doi.org/10.1016/j.crma.2010.01.025">10.1016/j.crma.2010.01.025</a>
  apa: Hausel, T., Letellier, E., &#38; Rodríguez Villegas, F. (2010). Topology of
    character varieties and representations of quivers. <i>Comptes Rendus Mathematique</i>.
    Elsevier. <a href="https://doi.org/10.1016/j.crma.2010.01.025">https://doi.org/10.1016/j.crma.2010.01.025</a>
  chicago: Hausel, Tamás, Emmanuel Letellier, and Fernando Rodríguez Villegas. “Topology
    of Character Varieties and Representations of Quivers.” <i>Comptes Rendus Mathematique</i>.
    Elsevier, 2010. <a href="https://doi.org/10.1016/j.crma.2010.01.025">https://doi.org/10.1016/j.crma.2010.01.025</a>.
  ieee: T. Hausel, E. Letellier, and F. Rodríguez Villegas, “Topology of character
    varieties and representations of quivers,” <i>Comptes Rendus Mathematique</i>,
    vol. 348, no. 3–4. Elsevier, pp. 131–135, 2010.
  ista: Hausel T, Letellier E, Rodríguez Villegas F. 2010. Topology of character varieties
    and representations of quivers. Comptes Rendus Mathematique. 348(3–4), 131–135.
  mla: Hausel, Tamás, et al. “Topology of Character Varieties and Representations
    of Quivers.” <i>Comptes Rendus Mathematique</i>, vol. 348, no. 3–4, Elsevier,
    2010, pp. 131–35, doi:<a href="https://doi.org/10.1016/j.crma.2010.01.025">10.1016/j.crma.2010.01.025</a>.
  short: T. Hausel, E. Letellier, F. Rodríguez Villegas, Comptes Rendus Mathematique
    348 (2010) 131–135.
date_created: 2018-12-11T11:52:11Z
date_published: 2010-02-01T00:00:00Z
date_updated: 2021-01-12T06:50:56Z
day: '01'
doi: 10.1016/j.crma.2010.01.025
extern: 1
intvolume: '       348'
issue: 3-4
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/0905.3491
month: '02'
oa: 1
page: 131 - 135
publication: Comptes Rendus Mathematique
publication_status: published
publisher: Elsevier
publist_id: '5731'
quality_controlled: 0
status: public
title: Topology of character varieties and representations of quivers
type: journal_article
volume: 348
year: '2010'
...
---
_id: '1468'
abstract:
- lang: eng
  text: 'This chapter surveys the motivations, related results, and progress made
    towards the following problem, raised by Hitchin in 1995: What is the space of
    L2 harmonic forms on the moduli space of Higgs bundles on a Riemann surface?'
author:
- first_name: Tamas
  full_name: Tamas Hausel
  id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
  last_name: Hausel
citation:
  ama: 'Hausel T. S-Duality in HyperkäHler Hodge Theory. In: <i>The Many Facets of
    Geometry: A Tribute to Nigel Hitchin</i>. Oxford University Press; 2010. doi:<a
    href="https://doi.org/10.1093/acprof:oso/9780199534920.003.0016">10.1093/acprof:oso/9780199534920.003.0016</a>'
  apa: 'Hausel, T. (2010). S-Duality in HyperkäHler Hodge Theory. In <i>The Many Facets
    of Geometry: A Tribute to Nigel Hitchin</i>. Oxford University Press. <a href="https://doi.org/10.1093/acprof:oso/9780199534920.003.0016">https://doi.org/10.1093/acprof:oso/9780199534920.003.0016</a>'
  chicago: 'Hausel, Tamás. “S-Duality in HyperkäHler Hodge Theory.” In <i>The Many
    Facets of Geometry: A Tribute to Nigel Hitchin</i>. Oxford University Press, 2010.
    <a href="https://doi.org/10.1093/acprof:oso/9780199534920.003.0016">https://doi.org/10.1093/acprof:oso/9780199534920.003.0016</a>.'
  ieee: 'T. Hausel, “S-Duality in HyperkäHler Hodge Theory,” in <i>The Many Facets
    of Geometry: A Tribute to Nigel Hitchin</i>, Oxford University Press, 2010.'
  ista: 'Hausel T. 2010.S-Duality in HyperkäHler Hodge Theory. In: The Many Facets
    of Geometry: A Tribute to Nigel Hitchin. .'
  mla: 'Hausel, Tamás. “S-Duality in HyperkäHler Hodge Theory.” <i>The Many Facets
    of Geometry: A Tribute to Nigel Hitchin</i>, Oxford University Press, 2010, doi:<a
    href="https://doi.org/10.1093/acprof:oso/9780199534920.003.0016">10.1093/acprof:oso/9780199534920.003.0016</a>.'
  short: 'T. Hausel, in:, The Many Facets of Geometry: A Tribute to Nigel Hitchin,
    Oxford University Press, 2010.'
date_created: 2018-12-11T11:52:12Z
date_published: 2010-09-01T00:00:00Z
date_updated: 2021-01-12T06:50:57Z
day: '01'
doi: 10.1093/acprof:oso/9780199534920.003.0016
extern: 1
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/0709.0504
month: '09'
oa: 1
publication: 'The Many Facets of Geometry: A Tribute to Nigel Hitchin'
publication_status: published
publisher: Oxford University Press
publist_id: '5729'
quality_controlled: 0
status: public
title: S-Duality in HyperkäHler Hodge Theory
type: book_chapter
year: '2010'
...
---
_id: '14983'
abstract:
- lang: eng
  text: 'This chapter tackles a difficult challenge: presenting signal processing
    material to non-experts. This chapter is meant to be comprehensible to people
    who have some math background, including a course in linear algebra and basic
    statistics, but do not specialize in mathematics, engineering, or related fields.
    Some formulas assume the reader is familiar with matrices and basic matrix operations,
    but not more advanced material. Furthermore, we tried to make the chapter readable
    even if you skip the formulas. Nevertheless, we include some simple methods to
    demonstrate the basics of adaptive data processing, then we proceed with some
    advanced methods that are fundamental in adaptive signal processing, and are likely
    to be useful in a variety of applications. The advanced algorithms are also online
    available [30]. In the second part, these techniques are applied to some real-world
    BCI data.'
acknowledgement: This work was supported by the EU grants “BrainCom” (FP6-2004-Mobility-5
  Grant No 024259) and “Multi-adaptive BCI” (MEIF-CT-2006 Grant No 040666). Furthermore,
  we thank Matthias Krauledat for fruitful discussions and tools for generating Fig.
  5.
alternative_title:
- The Frontiers Collection
article_processing_charge: No
author:
- first_name: Alois
  full_name: Schlögl, Alois
  id: 45BF87EE-F248-11E8-B48F-1D18A9856A87
  last_name: Schlögl
  orcid: 0000-0002-5621-8100
- first_name: Carmen
  full_name: Vidaurre, Carmen
  last_name: Vidaurre
- first_name: Klaus-Robert
  full_name: Müller, Klaus-Robert
  last_name: Müller
citation:
  ama: 'Schlögl A, Vidaurre C, Müller K-R. Adaptive Methods in BCI Research - An Introductory
    Tutorial. In: Graimann B, Pfurtscheller G, Allison B, eds. <i>Brain-Computer Interfaces</i>.
    1st ed. FRONTCOLL. Berlin, Heidelberg: Springer; 2010:331-355. doi:<a href="https://doi.org/10.1007/978-3-642-02091-9_18">10.1007/978-3-642-02091-9_18</a>'
  apa: 'Schlögl, A., Vidaurre, C., &#38; Müller, K.-R. (2010). Adaptive Methods in
    BCI Research - An Introductory Tutorial. In B. Graimann, G. Pfurtscheller, &#38;
    B. Allison (Eds.), <i>Brain-Computer Interfaces</i> (1st ed., pp. 331–355). Berlin,
    Heidelberg: Springer. <a href="https://doi.org/10.1007/978-3-642-02091-9_18">https://doi.org/10.1007/978-3-642-02091-9_18</a>'
  chicago: 'Schlögl, Alois, Carmen Vidaurre, and Klaus-Robert Müller. “Adaptive Methods
    in BCI Research - An Introductory Tutorial.” In <i>Brain-Computer Interfaces</i>,
    edited by Bernhard Graimann, Gert Pfurtscheller, and Brendan Allison, 1st ed.,
    331–55. FRONTCOLL. Berlin, Heidelberg: Springer, 2010. <a href="https://doi.org/10.1007/978-3-642-02091-9_18">https://doi.org/10.1007/978-3-642-02091-9_18</a>.'
  ieee: 'A. Schlögl, C. Vidaurre, and K.-R. Müller, “Adaptive Methods in BCI Research
    - An Introductory Tutorial,” in <i>Brain-Computer Interfaces</i>, 1st ed., B.
    Graimann, G. Pfurtscheller, and B. Allison, Eds. Berlin, Heidelberg: Springer,
    2010, pp. 331–355.'
  ista: 'Schlögl A, Vidaurre C, Müller K-R. 2010.Adaptive Methods in BCI Research
    - An Introductory Tutorial. In: Brain-Computer Interfaces. The Frontiers Collection,
    , 331–355.'
  mla: Schlögl, Alois, et al. “Adaptive Methods in BCI Research - An Introductory
    Tutorial.” <i>Brain-Computer Interfaces</i>, edited by Bernhard Graimann et al.,
    1st ed., Springer, 2010, pp. 331–55, doi:<a href="https://doi.org/10.1007/978-3-642-02091-9_18">10.1007/978-3-642-02091-9_18</a>.
  short: A. Schlögl, C. Vidaurre, K.-R. Müller, in:, B. Graimann, G. Pfurtscheller,
    B. Allison (Eds.), Brain-Computer Interfaces, 1st ed., Springer, Berlin, Heidelberg,
    2010, pp. 331–355.
corr_author: '1'
date_created: 2024-02-14T09:56:00Z
date_published: 2010-09-06T00:00:00Z
date_updated: 2024-10-21T06:03:06Z
day: '06'
department:
- _id: ScienComp
doi: 10.1007/978-3-642-02091-9_18
edition: '1'
editor:
- first_name: Bernhard
  full_name: Graimann, Bernhard
  last_name: Graimann
- first_name: Gert
  full_name: Pfurtscheller, Gert
  last_name: Pfurtscheller
- first_name: Brendan
  full_name: Allison, Brendan
  last_name: Allison
language:
- iso: eng
month: '09'
oa_version: None
page: 331-355
place: Berlin, Heidelberg
publication: Brain-Computer Interfaces
publication_identifier:
  eisbn:
  - '9783642020919'
  isbn:
  - '9783642020902'
  issn:
  - 1612-3018
publication_status: published
publisher: Springer
quality_controlled: '1'
scopus_import: '1'
series_title: FRONTCOLL
status: public
title: Adaptive Methods in BCI Research - An Introductory Tutorial
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2010'
...
---
_id: '1970'
abstract:
- lang: eng
  text: 'Complex I is the first enzyme of the respiratory chain and has a central
    role in cellular energy production, coupling electron transfer between NADH and
    quinone to proton translocation by an unknown mechanism. Dysfunction of complex
    I has been implicated in many human neurodegenerative diseases. We have determined
    the structure of its hydrophilic domain previously. Here, we report the α-helical
    structure of the membrane domain of complex I from Escherichia coli at 3.9 Å resolution.
    The antiporter-like subunits NuoL/M/N each contain 14 conserved transmembrane
    (TM) helices. Two of them are discontinuous, as in some transporters. Unexpectedly,
    subunit NuoL also contains a 110-Å long amphipathic α-helix, spanning almost the
    entire length of the domain. Furthermore, we have determined the structure of
    the entire complex I from Thermus thermophilus at 4.5 Å resolution. The L-shaped
    assembly consists of the α-helical model for the membrane domain, with 63 TM helices,
    and the known structure of the hydrophilic domain. The architecture of the complex
    provides strong clues about the coupling mechanism: the conformational changes
    at the interface of the two main domains may drive the long amphipathic α-helix
    of NuoL in a piston-like motion, tilting nearby discontinuous TM helices, resulting
    in proton translocation.'
acknowledgement: This work was funded by the Medical Research Council.
author:
- first_name: Rouslan
  full_name: Efremov, Rouslan G
  last_name: Efremov
- first_name: Rozbeh
  full_name: 'Baradaran, Rozbeh '
  last_name: Baradaran
- first_name: Leonid A
  full_name: Leonid Sazanov
  id: 338D39FE-F248-11E8-B48F-1D18A9856A87
  last_name: Sazanov
  orcid: 0000-0002-0977-7989
citation:
  ama: Efremov R, Baradaran R, Sazanov LA. The architecture of respiratory complex
    I. <i>Nature</i>. 2010;465(7297):441-445. doi:<a href="https://doi.org/10.1038/nature09066">10.1038/nature09066</a>
  apa: Efremov, R., Baradaran, R., &#38; Sazanov, L. A. (2010). The architecture of
    respiratory complex I. <i>Nature</i>. Nature Publishing Group. <a href="https://doi.org/10.1038/nature09066">https://doi.org/10.1038/nature09066</a>
  chicago: Efremov, Rouslan, Rozbeh Baradaran, and Leonid A Sazanov. “The Architecture
    of Respiratory Complex I.” <i>Nature</i>. Nature Publishing Group, 2010. <a href="https://doi.org/10.1038/nature09066">https://doi.org/10.1038/nature09066</a>.
  ieee: R. Efremov, R. Baradaran, and L. A. Sazanov, “The architecture of respiratory
    complex I,” <i>Nature</i>, vol. 465, no. 7297. Nature Publishing Group, pp. 441–445,
    2010.
  ista: Efremov R, Baradaran R, Sazanov LA. 2010. The architecture of respiratory
    complex I. Nature. 465(7297), 441–445.
  mla: Efremov, Rouslan, et al. “The Architecture of Respiratory Complex I.” <i>Nature</i>,
    vol. 465, no. 7297, Nature Publishing Group, 2010, pp. 441–45, doi:<a href="https://doi.org/10.1038/nature09066">10.1038/nature09066</a>.
  short: R. Efremov, R. Baradaran, L.A. Sazanov, Nature 465 (2010) 441–445.
date_created: 2018-12-11T11:54:58Z
date_published: 2010-05-27T00:00:00Z
date_updated: 2021-01-12T06:54:25Z
day: '27'
doi: 10.1038/nature09066
extern: 1
intvolume: '       465'
issue: '7297'
month: '05'
page: 441 - 445
publication: Nature
publication_status: published
publisher: Nature Publishing Group
publist_id: '5113'
quality_controlled: 0
status: public
title: The architecture of respiratory complex I
type: journal_article
volume: 465
year: '2010'
...
---
_id: '4346'
abstract:
- lang: eng
  text: With the term "Library 2.0" the editors mean an institution which applies
    the principles of the Web 2.0 such as openness, re-use, collaboration and interaction
    in the entire organization. Libraries are extending their service offerings and
    work processes to include the potential of Web 2.0 technologies. This changes
    the job description and self-image of librarians. The collective volume offers
    a complete overview of the topic Library 2.0 and the current state of developments
    from a technological, sociological, information theoretical and practice-oriented
    perspective.
alternative_title:
- Bibliotheks- und Informationspraxis
article_processing_charge: No
citation:
  ama: Danowski P, Bergmann J, eds. <i>Handbuch Bibliothek 2.0</i>. Vol 41. De Gruyter;
    2010. doi:<a href="https://doi.org/10.1515/9783110232103">10.1515/9783110232103</a>
  apa: Danowski, P., &#38; Bergmann, J. (Eds.). (2010). <i>Handbuch Bibliothek 2.0</i>
    (Vol. 41). De Gruyter. <a href="https://doi.org/10.1515/9783110232103">https://doi.org/10.1515/9783110232103</a>
  chicago: Danowski, Patrick, and Julia Bergmann, eds. <i>Handbuch Bibliothek 2.0</i>.
    Vol. 41. Bibliothekspraxis. De Gruyter, 2010. <a href="https://doi.org/10.1515/9783110232103">https://doi.org/10.1515/9783110232103</a>.
  ieee: P. Danowski and J. Bergmann, Eds., <i>Handbuch Bibliothek 2.0</i>, vol. 41.
    De Gruyter, 2010.
  ista: Danowski P, Bergmann J eds. 2010. Handbuch Bibliothek 2.0, De Gruyter, 405p.
  mla: Danowski, Patrick, and Julia Bergmann, editors. <i>Handbuch Bibliothek 2.0</i>.
    Vol. 41, De Gruyter, 2010, doi:<a href="https://doi.org/10.1515/9783110232103">10.1515/9783110232103</a>.
  short: P. Danowski, J. Bergmann, eds., Handbuch Bibliothek 2.0, De Gruyter, 2010.
date_created: 2018-12-11T12:08:23Z
date_published: 2010-09-01T00:00:00Z
date_updated: 2025-07-02T11:25:26Z
day: '01'
doi: 10.1515/9783110232103
editor:
- first_name: Patrick
  full_name: Danowski, Patrick
  id: 2EBD1598-F248-11E8-B48F-1D18A9856A87
  last_name: Danowski
  orcid: 0000-0002-6026-4409
- first_name: Julia
  full_name: Bergmann, Julia
  last_name: Bergmann
extern: '1'
language:
- iso: ger
main_file_link:
- open_access: '1'
  url: https://www.degruyter.com/document/doi/10.1515/9783110232103/html
month: '09'
oa: 1
oa_version: Published Version
page: '405'
publication_identifier:
  eisbn:
  - 9-783-1102-3210-3
  isbn:
  - 9-783-1102-3209-7
publication_status: published
publisher: De Gruyter
publist_id: '1228'
quality_controlled: '1'
series_title: Bibliothekspraxis
status: public
title: Handbuch Bibliothek 2.0
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: book_editor
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: ' 41'
year: '2010'
...
---
_id: '4358'
abstract:
- lang: eng
  text: Phenotypic biotyping has traditionally been used to differentiate bacteria
    occupying distinct ecological niches such as host species. For example, the capacity
    of Staphylococcus aureus from sheep to coagulate ruminant plasma, reported over
    60 years ago, led to the description of small ruminant and bovine S. aureus ecovars.
    The great majority of small ruminant isolates are represented by a single, widespread
    clonal complex (CC133) of S. aureus, but its evolutionary origin and the molecular
    basis for its host tropism remain unknown. Here, we provide evidence that the
    CC133 clone evolved as the result of a human to ruminant host jump followed by
    adaptive genome diversification. Comparative whole-genome sequencing revealed
    molecular evidence for host adaptation including gene decay and diversification
    of proteins involved in host-pathogen interactions. Importantly, several novel
    mobile genetic elements encoding virulence proteins with attenuated or enhanced
    activity in ruminants were widely distributed in CC133 isolates, suggesting a
    key role in its host-specific interactions. To investigate this further, we examined
    the activity of a novel staphylococcal pathogenicity island (SaPIov2) found in
    the great majority of CC133 isolates which encodes a variant of the chromosomally
    encoded von Willebrand-binding protein (vWbp(Sov2)), previously demonstrated to
    have coagulase activity for human plasma. Remarkably, we discovered that SaPIov2
    confers the ability to coagulate ruminant plasma suggesting an important role
    in ruminant disease pathogenesis and revealing the origin of a defining phenotype
    of the classical S. aureus biotyping scheme. Taken together, these data provide
    broad new insights into the origin and molecular basis of S. aureus ruminant host
    specificity.
author:
- first_name: Caitriona
  full_name: Guinane, Caitriona M
  last_name: Guinane
- first_name: Nouri
  full_name: Ben Zakour, Nouri L
  last_name: Ben Zakour
- first_name: Maria
  full_name: Tormo-Mas, Maria A
  last_name: Tormo Mas
- first_name: Lucy
  full_name: Weinert, Lucy A
  last_name: Weinert
- first_name: Bethan
  full_name: Lowder, Bethan V
  last_name: Lowder
- first_name: Robyn
  full_name: Cartwright, Robyn A
  last_name: Cartwright
- first_name: Davida
  full_name: Smyth, Davida S
  last_name: Smyth
- first_name: Cyril
  full_name: Smyth, Cyril J
  last_name: Smyth
- first_name: Jodi
  full_name: Lindsay, Jodi A
  last_name: Lindsay
- first_name: Katherine
  full_name: Gould, Katherine A
  last_name: Gould
- first_name: Adam
  full_name: Witney, Adam
  last_name: Witney
- first_name: Jason
  full_name: Hinds, Jason
  last_name: Hinds
- first_name: Jonathan P
  full_name: Jonathan Bollback
  id: 2C6FA9CC-F248-11E8-B48F-1D18A9856A87
  last_name: Bollback
  orcid: 0000-0002-4624-4612
- first_name: Andrew
  full_name: Rambaut, Andrew
  last_name: Rambaut
- first_name: Jose
  full_name: Penades, Jose R
  last_name: Penades
- first_name: J Ross
  full_name: Fitzgerald, J Ross
  last_name: Fitzgerald
citation:
  ama: Guinane C, Ben Zakour N, Tormo Mas M, et al. Evolutionary genomics of Staphylococcus
    aureus reveals insights into the origin and molecular basis of ruminant host adaptation.
    <i>Genome Biology and Evolution</i>. 2010;2:454-466. doi:<a href="https://doi.org/10.1093/gbe/evq031">10.1093/gbe/evq031</a>
  apa: Guinane, C., Ben Zakour, N., Tormo Mas, M., Weinert, L., Lowder, B., Cartwright,
    R., … Fitzgerald, J. R. (2010). Evolutionary genomics of Staphylococcus aureus
    reveals insights into the origin and molecular basis of ruminant host adaptation.
    <i>Genome Biology and Evolution</i>. Oxford University Press. <a href="https://doi.org/10.1093/gbe/evq031">https://doi.org/10.1093/gbe/evq031</a>
  chicago: Guinane, Caitriona, Nouri Ben Zakour, Maria Tormo Mas, Lucy Weinert, Bethan
    Lowder, Robyn Cartwright, Davida Smyth, et al. “Evolutionary Genomics of Staphylococcus
    Aureus Reveals Insights into the Origin and Molecular Basis of Ruminant Host Adaptation.”
    <i>Genome Biology and Evolution</i>. Oxford University Press, 2010. <a href="https://doi.org/10.1093/gbe/evq031">https://doi.org/10.1093/gbe/evq031</a>.
  ieee: C. Guinane <i>et al.</i>, “Evolutionary genomics of Staphylococcus aureus
    reveals insights into the origin and molecular basis of ruminant host adaptation,”
    <i>Genome Biology and Evolution</i>, vol. 2. Oxford University Press, pp. 454–466,
    2010.
  ista: Guinane C, Ben Zakour N, Tormo Mas M, Weinert L, Lowder B, Cartwright R, Smyth
    D, Smyth C, Lindsay J, Gould K, Witney A, Hinds J, Bollback JP, Rambaut A, Penades
    J, Fitzgerald JR. 2010. Evolutionary genomics of Staphylococcus aureus reveals
    insights into the origin and molecular basis of ruminant host adaptation. Genome
    Biology and Evolution. 2, 454–466.
  mla: Guinane, Caitriona, et al. “Evolutionary Genomics of Staphylococcus Aureus
    Reveals Insights into the Origin and Molecular Basis of Ruminant Host Adaptation.”
    <i>Genome Biology and Evolution</i>, vol. 2, Oxford University Press, 2010, pp.
    454–66, doi:<a href="https://doi.org/10.1093/gbe/evq031">10.1093/gbe/evq031</a>.
  short: C. Guinane, N. Ben Zakour, M. Tormo Mas, L. Weinert, B. Lowder, R. Cartwright,
    D. Smyth, C. Smyth, J. Lindsay, K. Gould, A. Witney, J. Hinds, J.P. Bollback,
    A. Rambaut, J. Penades, J.R. Fitzgerald, Genome Biology and Evolution 2 (2010)
    454–466.
date_created: 2018-12-11T12:08:27Z
date_published: 2010-06-09T00:00:00Z
date_updated: 2021-01-12T07:56:23Z
day: '09'
doi: 10.1093/gbe/evq031
extern: 1
intvolume: '         2'
month: '06'
page: 454 - 466
publication: Genome Biology and Evolution
publication_status: published
publisher: Oxford University Press
publist_id: '1100'
quality_controlled: 0
status: public
title: Evolutionary genomics of Staphylococcus aureus reveals insights into the origin
  and molecular basis of ruminant host adaptation
type: journal_article
volume: 2
year: '2010'
...
---
_id: '4361'
abstract:
- lang: eng
  text: Depth-bounded processes form the most expressive known fragment of the π-calculus
    for which interesting verification problems are still decidable. In this paper
    we develop an adequate domain of limits for the well-structured transition systems
    that are induced by depth-bounded processes. An immediate consequence of our result
    is that there exists a forward algorithm that decides the covering problem for
    this class. Unlike backward algorithms, the forward algorithm terminates even
    if the depth of the process is not known a priori. More importantly, our result
    suggests a whole spectrum of forward algorithms that enable the effective verification
    of a large class of mobile systems.
alternative_title:
- LNCS
author:
- first_name: Thomas
  full_name: Wies, Thomas
  id: 447BFB88-F248-11E8-B48F-1D18A9856A87
  last_name: Wies
- first_name: Damien
  full_name: Zufferey, Damien
  id: 4397AC76-F248-11E8-B48F-1D18A9856A87
  last_name: Zufferey
  orcid: 0000-0002-3197-8736
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
citation:
  ama: 'Wies T, Zufferey D, Henzinger TA. Forward analysis of depth-bounded processes.
    In: Ong L, ed. Vol 6014. Springer; 2010:94-108. doi:<a href="https://doi.org/10.1007/978-3-642-12032-9_8">10.1007/978-3-642-12032-9_8</a>'
  apa: 'Wies, T., Zufferey, D., &#38; Henzinger, T. A. (2010). Forward analysis of
    depth-bounded processes. In L. Ong (Ed.) (Vol. 6014, pp. 94–108). Presented at
    the FoSSaCS: Foundations of Software Science and Computation Structures, Paphos,
    Cyprus: Springer. <a href="https://doi.org/10.1007/978-3-642-12032-9_8">https://doi.org/10.1007/978-3-642-12032-9_8</a>'
  chicago: Wies, Thomas, Damien Zufferey, and Thomas A Henzinger. “Forward Analysis
    of Depth-Bounded Processes.” edited by Luke Ong, 6014:94–108. Springer, 2010.
    <a href="https://doi.org/10.1007/978-3-642-12032-9_8">https://doi.org/10.1007/978-3-642-12032-9_8</a>.
  ieee: 'T. Wies, D. Zufferey, and T. A. Henzinger, “Forward analysis of depth-bounded
    processes,” presented at the FoSSaCS: Foundations of Software Science and Computation
    Structures, Paphos, Cyprus, 2010, vol. 6014, pp. 94–108.'
  ista: 'Wies T, Zufferey D, Henzinger TA. 2010. Forward analysis of depth-bounded
    processes. FoSSaCS: Foundations of Software Science and Computation Structures,
    LNCS, vol. 6014, 94–108.'
  mla: Wies, Thomas, et al. <i>Forward Analysis of Depth-Bounded Processes</i>. Edited
    by Luke Ong, vol. 6014, Springer, 2010, pp. 94–108, doi:<a href="https://doi.org/10.1007/978-3-642-12032-9_8">10.1007/978-3-642-12032-9_8</a>.
  short: T. Wies, D. Zufferey, T.A. Henzinger, in:, L. Ong (Ed.), Springer, 2010,
    pp. 94–108.
conference:
  end_date: 2010-03-28
  location: Paphos, Cyprus
  name: 'FoSSaCS: Foundations of Software Science and Computation Structures'
  start_date: 2010-03-20
corr_author: '1'
date_created: 2018-12-11T12:08:27Z
date_published: 2010-03-01T00:00:00Z
date_updated: 2026-04-09T14:35:23Z
day: '01'
ddc:
- '004'
department:
- _id: ToHe
doi: 10.1007/978-3-642-12032-9_8
editor:
- first_name: Luke
  full_name: Ong, Luke
  last_name: Ong
file:
- access_level: open_access
  checksum: 3e610de84937d821316362658239134a
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:08:17Z
  date_updated: 2020-07-14T12:46:27Z
  file_id: '4677'
  file_name: IST-2012-50-v1+1_Forward_analysis_of_depth-bounded_processes.pdf
  file_size: 240766
  relation: main_file
file_date_updated: 2020-07-14T12:46:27Z
has_accepted_license: '1'
intvolume: '      6014'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Submitted Version
page: 94 - 108
publication_status: published
publisher: Springer
publist_id: '1099'
pubrep_id: '50'
quality_controlled: '1'
related_material:
  record:
  - id: '1405'
    relation: dissertation_contains
    status: public
scopus_import: 1
status: public
title: Forward analysis of depth-bounded processes
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 6014
year: '2010'
...
---
_id: '4362'
abstract:
- lang: eng
  text: Software transactional memories (STMs) promise simple and efficient concurrent
    programming. Several correctness properties have been proposed for STMs. Based
    on a bounded conflict graph algorithm for verifying correctness of STMs, we develop
    TRACER, a tool for runtime verification of STM implementations. The novelty of
    TRACER lies in the way it combines coarse and precise runtime analyses to guarantee
    sound and complete verification in an efficient manner. We implement TRACER in
    the TL2 STM implementation. We evaluate the performance of TRACER on STAMP benchmarks.
    While a precise runtime verification technique based on conflict graphs results
    in an average slowdown of 60x, the two-level approach of TRACER performs complete
    verification with an average slowdown of around 25x across different benchmarks.
alternative_title:
- LNCS
author:
- first_name: Vasu
  full_name: Singh, Vasu
  id: 4DAE2708-F248-11E8-B48F-1D18A9856A87
  last_name: Singh
citation:
  ama: 'Singh V. Runtime verification for software transactional memories. In: Sokolsky
    O, Rosu G, Tilmann N, et al., eds. Vol 6418. Springer; 2010:421-435. doi:<a href="https://doi.org/10.1007/978-3-642-16612-9_32">10.1007/978-3-642-16612-9_32</a>'
  apa: 'Singh, V. (2010). Runtime verification for software transactional memories.
    In O. Sokolsky, G. Rosu, N. Tilmann, H. Barringer, Y. Falcone, B. Finkbeiner,
    … G. Pace (Eds.) (Vol. 6418, pp. 421–435). Presented at the RV: International
    Conference on Runtime Verification, St. Julians, Malta: Springer. <a href="https://doi.org/10.1007/978-3-642-16612-9_32">https://doi.org/10.1007/978-3-642-16612-9_32</a>'
  chicago: Singh, Vasu. “Runtime Verification for Software Transactional Memories.”
    edited by Oleg Sokolsky, Grigore Rosu, Nikolai Tilmann, Howard Barringer, Ylies
    Falcone, Bernd Finkbeiner, Klaus Havelund, Insup Lee, and Gordon Pace, 6418:421–35.
    Springer, 2010. <a href="https://doi.org/10.1007/978-3-642-16612-9_32">https://doi.org/10.1007/978-3-642-16612-9_32</a>.
  ieee: 'V. Singh, “Runtime verification for software transactional memories,” presented
    at the RV: International Conference on Runtime Verification, St. Julians, Malta,
    2010, vol. 6418, pp. 421–435.'
  ista: 'Singh V. 2010. Runtime verification for software transactional memories.
    RV: International Conference on Runtime Verification, LNCS, vol. 6418, 421–435.'
  mla: Singh, Vasu. <i>Runtime Verification for Software Transactional Memories</i>.
    Edited by Oleg Sokolsky et al., vol. 6418, Springer, 2010, pp. 421–35, doi:<a
    href="https://doi.org/10.1007/978-3-642-16612-9_32">10.1007/978-3-642-16612-9_32</a>.
  short: V. Singh, in:, O. Sokolsky, G. Rosu, N. Tilmann, H. Barringer, Y. Falcone,
    B. Finkbeiner, K. Havelund, I. Lee, G. Pace (Eds.), Springer, 2010, pp. 421–435.
conference:
  end_date: 2010-11-04
  location: St. Julians, Malta
  name: 'RV: International Conference on Runtime Verification'
  start_date: 2010-11-01
corr_author: '1'
date_created: 2018-12-11T12:08:28Z
date_published: 2010-01-01T00:00:00Z
date_updated: 2024-10-09T20:54:01Z
day: '01'
department:
- _id: ToHe
doi: 10.1007/978-3-642-16612-9_32
editor:
- first_name: Oleg
  full_name: Sokolsky, Oleg
  last_name: Sokolsky
- first_name: Grigore
  full_name: Rosu, Grigore
  last_name: Rosu
- first_name: Nikolai
  full_name: Tilmann, Nikolai
  last_name: Tilmann
- first_name: Howard
  full_name: Barringer, Howard
  last_name: Barringer
- first_name: Ylies
  full_name: Falcone, Ylies
  last_name: Falcone
- first_name: Bernd
  full_name: Finkbeiner, Bernd
  last_name: Finkbeiner
- first_name: Klaus
  full_name: Havelund, Klaus
  last_name: Havelund
- first_name: Insup
  full_name: Lee, Insup
  last_name: Lee
- first_name: Gordon
  full_name: Pace, Gordon
  last_name: Pace
intvolume: '      6418'
language:
- iso: eng
month: '01'
oa_version: None
page: 421 - 435
publication_status: published
publisher: Springer
publist_id: '1096'
quality_controlled: '1'
scopus_import: 1
status: public
title: Runtime verification for software transactional memories
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 6418
year: '2010'
...
---
_id: '4364'
author:
- first_name: Andreas
  full_name: Podelski,Andreas
  last_name: Podelski
- first_name: Thomas
  full_name: Thomas Wies
  id: 447BFB88-F248-11E8-B48F-1D18A9856A87
  last_name: Wies
citation:
  ama: 'Podelski A, Wies T. Counterexample-guided focus. In: ACM; 2010:249-260. doi:<a
    href="https://doi.org/10.1145/1707801.1706330">10.1145/1707801.1706330</a>'
  apa: 'Podelski, A., &#38; Wies, T. (2010). Counterexample-guided focus (pp. 249–260).
    Presented at the POPL: Principles of Programming Languages, ACM. <a href="https://doi.org/10.1145/1707801.1706330">https://doi.org/10.1145/1707801.1706330</a>'
  chicago: Podelski, Andreas, and Thomas Wies. “Counterexample-Guided Focus,” 249–60.
    ACM, 2010. <a href="https://doi.org/10.1145/1707801.1706330">https://doi.org/10.1145/1707801.1706330</a>.
  ieee: 'A. Podelski and T. Wies, “Counterexample-guided focus,” presented at the
    POPL: Principles of Programming Languages, 2010, pp. 249–260.'
  ista: 'Podelski A, Wies T. 2010. Counterexample-guided focus. POPL: Principles of
    Programming Languages, 249–260.'
  mla: Podelski, Andreas, and Thomas Wies. <i>Counterexample-Guided Focus</i>. ACM,
    2010, pp. 249–60, doi:<a href="https://doi.org/10.1145/1707801.1706330">10.1145/1707801.1706330</a>.
  short: A. Podelski, T. Wies, in:, ACM, 2010, pp. 249–260.
conference:
  name: 'POPL: Principles of Programming Languages'
date_created: 2018-12-11T12:08:28Z
date_published: 2010-01-01T00:00:00Z
date_updated: 2021-01-12T07:56:26Z
day: '01'
doi: 10.1145/1707801.1706330
extern: 1
month: '01'
page: 249 - 260
publication_status: published
publisher: ACM
publist_id: '1093'
quality_controlled: 0
status: public
title: Counterexample-guided focus
type: conference
year: '2010'
...
---
_id: '4369'
abstract:
- lang: eng
  text: In this paper we propose a novel technique for constructing timed automata
    from properties expressed in the logic mtl, under bounded-variability assumptions.
    We handle full mtl and include all future operators. Our construction is based
    on separation of the continuous time monitoring of the input sequence and discrete
    predictions regarding the future. The separation of the continuous from the discrete
    allows us to determinize our automata in an exponential construction that does
    not increase the number of clocks. This leads to a doubly exponential construction
    from mtl to deterministic timed automata, compared with triply exponential using
    existing approaches. We offer an alternative to the existing approach to linear
    real-time model checking, which has never been implemented. It further offers
    a unified framework for model checking, runtime monitoring, and synthesis, in
    an approach that can reuse tools, implementations, and insights from the discrete
    setting.
alternative_title:
- LNCS
author:
- first_name: Dejan
  full_name: Nickovic, Dejan
  id: 41BCEE5C-F248-11E8-B48F-1D18A9856A87
  last_name: Nickovic
- first_name: Nir
  full_name: Piterman, Nir
  last_name: Piterman
citation:
  ama: 'Nickovic D, Piterman N. From MTL to deterministic timed automata. In: Henzinger
    TA, Chatterjee K, eds. Vol 6246. Springer; 2010:152-167. doi:<a href="https://doi.org/10.1007/978-3-642-15297-9_13">10.1007/978-3-642-15297-9_13</a>'
  apa: 'Nickovic, D., &#38; Piterman, N. (2010). From MTL to deterministic timed automata.
    In T. A. Henzinger &#38; K. Chatterjee (Eds.) (Vol. 6246, pp. 152–167). Presented
    at the FORMATS: Formal Modeling and Analysis of Timed Systems, Klosterneuburg,
    Austria: Springer. <a href="https://doi.org/10.1007/978-3-642-15297-9_13">https://doi.org/10.1007/978-3-642-15297-9_13</a>'
  chicago: Nickovic, Dejan, and Nir Piterman. “From MTL to Deterministic Timed Automata.”
    edited by Thomas A. Henzinger and Krishnendu Chatterjee, 6246:152–67. Springer,
    2010. <a href="https://doi.org/10.1007/978-3-642-15297-9_13">https://doi.org/10.1007/978-3-642-15297-9_13</a>.
  ieee: 'D. Nickovic and N. Piterman, “From MTL to deterministic timed automata,”
    presented at the FORMATS: Formal Modeling and Analysis of Timed Systems, Klosterneuburg,
    Austria, 2010, vol. 6246, pp. 152–167.'
  ista: 'Nickovic D, Piterman N. 2010. From MTL to deterministic timed automata. FORMATS:
    Formal Modeling and Analysis of Timed Systems, LNCS, vol. 6246, 152–167.'
  mla: Nickovic, Dejan, and Nir Piterman. <i>From MTL to Deterministic Timed Automata</i>.
    Edited by Thomas A. Henzinger and Krishnendu Chatterjee, vol. 6246, Springer,
    2010, pp. 152–67, doi:<a href="https://doi.org/10.1007/978-3-642-15297-9_13">10.1007/978-3-642-15297-9_13</a>.
  short: D. Nickovic, N. Piterman, in:, T.A. Henzinger, K. Chatterjee (Eds.), Springer,
    2010, pp. 152–167.
conference:
  end_date: 2010-09-10
  location: Klosterneuburg, Austria
  name: 'FORMATS: Formal Modeling and Analysis of Timed Systems'
  start_date: 2010-09-08
corr_author: '1'
date_created: 2018-12-11T12:08:30Z
date_published: 2010-09-08T00:00:00Z
date_updated: 2024-10-09T20:54:01Z
day: '08'
ddc:
- '004'
department:
- _id: ToHe
doi: 10.1007/978-3-642-15297-9_13
ec_funded: 1
editor:
- first_name: Thomas A.
  full_name: Henzinger, Thomas A.
  last_name: Henzinger
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  last_name: Chatterjee
file:
- access_level: open_access
  checksum: b0ca5f5fbe8a3d20ccbc6f51a344a459
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:13:43Z
  date_updated: 2020-07-14T12:46:27Z
  file_id: '5028'
  file_name: IST-2012-49-v1+1_From_MTL_to_deterministic_timed_automata.pdf
  file_size: 249789
  relation: main_file
file_date_updated: 2020-07-14T12:46:27Z
has_accepted_license: '1'
intvolume: '      6246'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Submitted Version
page: 152 - 167
project:
- _id: 25EFB36C-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '215543'
  name: COMponent-Based Embedded Systems design Techniques
- _id: 25F1337C-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '214373'
  name: Design for Embedded Systems
publication_status: published
publisher: Springer
publist_id: '1090'
pubrep_id: '49'
quality_controlled: '1'
scopus_import: 1
status: public
title: From MTL to deterministic timed automata
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 6246
year: '2010'
...
---
_id: '4378'
abstract:
- lang: eng
  text: 'Techniques such as verification condition generation, predicate abstraction,
    and expressive type systems reduce software verification to proving formulas in
    expressive logics. Programs and their specifications often make use of data structures
    such as sets, multisets, algebraic data types, or graphs. Consequently, formulas
    generated from verification also involve such data structures. To automate the
    proofs of such formulas we propose a logic (a “calculus”) of such data structures.
    We build the calculus by starting from decidable logics of individual data structures,
    and connecting them through functions and sets, in ways that go beyond the frameworks
    such as Nelson-Oppen. The result are new decidable logics that can simultaneously
    specify properties of different kinds of data structures and overcome the limitations
    of the individual logics. Several of our decidable logics include abstraction
    functions that map a data structure into its more abstract view (a tree into a
    multiset, a multiset into a set), into a numerical quantity (the size or the height),
    or into the truth value of a candidate data structure invariant (sortedness, or
    the heap property). For algebraic data types, we identify an asymptotic many-to-one
    condition on the abstraction function that guarantees the existence of a decision
    procedure. In addition to the combination based on abstraction functions, we can
    combine multiple data structure theories if they all reduce to the same data structure
    logic. As an instance of this approach, we describe a decidable logic whose formulas
    are propositional combinations of formulas in: weak monadic second-order logic
    of two successors, two-variable logic with counting, multiset algebra with Presburger
    arithmetic, the Bernays-Schönfinkel-Ramsey class of first-order logic, and the
    logic of algebraic data types with the set content function. The subformulas in
    this combination can share common variables that refer to sets of objects along
    with the common set algebra operations. Such sound and complete combination is
    possible because the relations on sets definable in the component logics are all
    expressible in Boolean Algebra with Presburger Arithmetic. Presburger arithmetic
    and its new extensions play an important role in our decidability results. In
    several cases, when we combine logics that belong to NP, we can prove the satisfiability
    for the combined logic is still in NP.'
alternative_title:
- LNCS
author:
- first_name: Viktor
  full_name: Kuncak, Viktor
  last_name: Kuncak
- first_name: Ruzica
  full_name: Piskac, Ruzica
  last_name: Piskac
- first_name: Philippe
  full_name: Suter, Philippe
  last_name: Suter
- first_name: Thomas
  full_name: Wies, Thomas
  id: 447BFB88-F248-11E8-B48F-1D18A9856A87
  last_name: Wies
citation:
  ama: 'Kuncak V, Piskac R, Suter P, Wies T. Building a calculus of data structures.
    In: Barthe G, Hermenegildo M, eds. Vol 5944. Springer; 2010:26-44. doi:<a href="https://doi.org/10.1007/978-3-642-11319-2_6">10.1007/978-3-642-11319-2_6</a>'
  apa: 'Kuncak, V., Piskac, R., Suter, P., &#38; Wies, T. (2010). Building a calculus
    of data structures. In G. Barthe &#38; M. Hermenegildo (Eds.) (Vol. 5944, pp.
    26–44). Presented at the VMCAI: Verification, Model Checking and Abstract Interpretation,
    Madrid, Spain: Springer. <a href="https://doi.org/10.1007/978-3-642-11319-2_6">https://doi.org/10.1007/978-3-642-11319-2_6</a>'
  chicago: Kuncak, Viktor, Ruzica Piskac, Philippe Suter, and Thomas Wies. “Building
    a Calculus of Data Structures.” edited by Gilles Barthe and Manuel Hermenegildo,
    5944:26–44. Springer, 2010. <a href="https://doi.org/10.1007/978-3-642-11319-2_6">https://doi.org/10.1007/978-3-642-11319-2_6</a>.
  ieee: 'V. Kuncak, R. Piskac, P. Suter, and T. Wies, “Building a calculus of data
    structures,” presented at the VMCAI: Verification, Model Checking and Abstract
    Interpretation, Madrid, Spain, 2010, vol. 5944, pp. 26–44.'
  ista: 'Kuncak V, Piskac R, Suter P, Wies T. 2010. Building a calculus of data structures.
    VMCAI: Verification, Model Checking and Abstract Interpretation, LNCS, vol. 5944,
    26–44.'
  mla: Kuncak, Viktor, et al. <i>Building a Calculus of Data Structures</i>. Edited
    by Gilles Barthe and Manuel Hermenegildo, vol. 5944, Springer, 2010, pp. 26–44,
    doi:<a href="https://doi.org/10.1007/978-3-642-11319-2_6">10.1007/978-3-642-11319-2_6</a>.
  short: V. Kuncak, R. Piskac, P. Suter, T. Wies, in:, G. Barthe, M. Hermenegildo
    (Eds.), Springer, 2010, pp. 26–44.
conference:
  end_date: 2010-01-19
  location: Madrid, Spain
  name: 'VMCAI: Verification, Model Checking and Abstract Interpretation'
  start_date: 2010-01-17
date_created: 2018-12-11T12:08:33Z
date_published: 2010-01-01T00:00:00Z
date_updated: 2021-01-12T07:56:31Z
day: '01'
department:
- _id: ToHe
doi: 10.1007/978-3-642-11319-2_6
editor:
- first_name: Gilles
  full_name: Barthe, Gilles
  last_name: Barthe
- first_name: Manuel
  full_name: Hermenegildo, Manuel
  last_name: Hermenegildo
intvolume: '      5944'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://infoscience.epfl.ch/record/161290/
month: '01'
oa: 1
oa_version: Submitted Version
page: 26 - 44
publication_status: published
publisher: Springer
publist_id: '1081'
quality_controlled: '1'
scopus_import: 1
status: public
title: Building a calculus of data structures
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 5944
year: '2010'
...
---
_id: '4379'
abstract:
- lang: eng
  text: |
    The formal specification component of verification can be exported to simulation through the idea of property checkers. The essence of this approach is the automatic construction of an observer from the specification in the form of a program that can be interfaced with a simulator and alert the user if the property is violated by a simulation trace. Although not complete, this lighter approach to formal verification has been effectively used in software and digital hardware to detect errors. Recently, the idea of property checkers has been extended to analog and mixed-signal systems.

    In this paper, we apply the property-based checking methodology to an industrial and realistic example of a DDR2 memory interface. The properties describing the DDR2 analog behavior are expressed in the formal specification language stl/psl in form of assertions. The simulation traces generated from an actual DDR2 interface design are checked with respect to the stl/psl assertions using the amt tool. The focus of this paper is on the translation of the official (informal and descriptive) specification of two non-trivial DDR2 properties into stl/psl assertions. We study both the benefits and the current limits of such approach.
acknowledgement: We would like to thank Tom Giovannini from Rambus, Inc. for his detailed
  explana- tions of the DDR2 specification and for providing us with simulation traces.
  We would also like to thank Oded Maler from Verimag for discussions on the STL/PSL
  language and its extensions.
author:
- first_name: Kevin
  full_name: Jones, Kevin D
  last_name: Jones
- first_name: Victor
  full_name: Konrad,Victor
  last_name: Konrad
- first_name: Dejan
  full_name: Dejan Nickovic
  id: 41BCEE5C-F248-11E8-B48F-1D18A9856A87
  last_name: Nickovic
citation:
  ama: 'Jones K, Konrad V, Nickovic D. Analog property checkers: a DDR2 case study.
    <i>Formal Methods in System Design</i>. 2010;36(2):114-130. doi:<a href="https://doi.org/10.1007/s10703-009-0085-x">10.1007/s10703-009-0085-x</a>'
  apa: 'Jones, K., Konrad, V., &#38; Nickovic, D. (2010). Analog property checkers:
    a DDR2 case study. <i>Formal Methods in System Design</i>. Springer. <a href="https://doi.org/10.1007/s10703-009-0085-x">https://doi.org/10.1007/s10703-009-0085-x</a>'
  chicago: 'Jones, Kevin, Victor Konrad, and Dejan Nickovic. “Analog Property Checkers:
    A DDR2 Case Study.” <i>Formal Methods in System Design</i>. Springer, 2010. <a
    href="https://doi.org/10.1007/s10703-009-0085-x">https://doi.org/10.1007/s10703-009-0085-x</a>.'
  ieee: 'K. Jones, V. Konrad, and D. Nickovic, “Analog property checkers: a DDR2 case
    study,” <i>Formal Methods in System Design</i>, vol. 36, no. 2. Springer, pp.
    114–130, 2010.'
  ista: 'Jones K, Konrad V, Nickovic D. 2010. Analog property checkers: a DDR2 case
    study. Formal Methods in System Design. 36(2), 114–130.'
  mla: 'Jones, Kevin, et al. “Analog Property Checkers: A DDR2 Case Study.” <i>Formal
    Methods in System Design</i>, vol. 36, no. 2, Springer, 2010, pp. 114–30, doi:<a
    href="https://doi.org/10.1007/s10703-009-0085-x">10.1007/s10703-009-0085-x</a>.'
  short: K. Jones, V. Konrad, D. Nickovic, Formal Methods in System Design 36 (2010)
    114–130.
date_created: 2018-12-11T12:08:33Z
date_published: 2010-06-01T00:00:00Z
date_updated: 2021-01-12T07:56:31Z
day: '01'
doi: 10.1007/s10703-009-0085-x
extern: 1
intvolume: '        36'
issue: '2'
main_file_link:
- open_access: '1'
  url: http://openaccess.city.ac.uk/1066/
month: '06'
oa: 1
page: 114 - 130
publication: Formal Methods in System Design
publication_status: published
publisher: Springer
publist_id: '1080'
quality_controlled: 0
status: public
title: 'Analog property checkers: a DDR2 case study'
type: journal_article
volume: 36
year: '2010'
...
---
_id: '4380'
abstract:
- lang: eng
  text: Cloud computing is an emerging paradigm aimed to offer users pay-per-use computing
    resources, while leaving the burden of managing the computing infrastructure to
    the cloud provider. We present a new programming and pricing model that gives
    the cloud user the flexibility of trading execution speed and price on a per-job
    basis. We discuss the scheduling and resource management challenges for the cloud
    provider that arise in the implementation of this model. We argue that techniques
    from real-time and embedded software can be useful in this context.
author:
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Anmol
  full_name: Tomar, Anmol
  id: 3D8D36B6-F248-11E8-B48F-1D18A9856A87
  last_name: Tomar
- first_name: Vasu
  full_name: Singh, Vasu
  id: 4DAE2708-F248-11E8-B48F-1D18A9856A87
  last_name: Singh
- first_name: Thomas
  full_name: Wies, Thomas
  id: 447BFB88-F248-11E8-B48F-1D18A9856A87
  last_name: Wies
- first_name: Damien
  full_name: Zufferey, Damien
  id: 4397AC76-F248-11E8-B48F-1D18A9856A87
  last_name: Zufferey
  orcid: 0000-0002-3197-8736
citation:
  ama: 'Henzinger TA, Tomar A, Singh V, Wies T, Zufferey D. A marketplace for cloud
    resources. In: ACM; 2010:1-8. doi:<a href="https://doi.org/10.1145/1879021.1879022">10.1145/1879021.1879022</a>'
  apa: 'Henzinger, T. A., Tomar, A., Singh, V., Wies, T., &#38; Zufferey, D. (2010).
    A marketplace for cloud resources (pp. 1–8). Presented at the EMSOFT: Embedded
    Software , Arizona, USA: ACM. <a href="https://doi.org/10.1145/1879021.1879022">https://doi.org/10.1145/1879021.1879022</a>'
  chicago: Henzinger, Thomas A, Anmol Tomar, Vasu Singh, Thomas Wies, and Damien Zufferey.
    “A Marketplace for Cloud Resources,” 1–8. ACM, 2010. <a href="https://doi.org/10.1145/1879021.1879022">https://doi.org/10.1145/1879021.1879022</a>.
  ieee: 'T. A. Henzinger, A. Tomar, V. Singh, T. Wies, and D. Zufferey, “A marketplace
    for cloud resources,” presented at the EMSOFT: Embedded Software , Arizona, USA,
    2010, pp. 1–8.'
  ista: 'Henzinger TA, Tomar A, Singh V, Wies T, Zufferey D. 2010. A marketplace for
    cloud resources. EMSOFT: Embedded Software , 1–8.'
  mla: Henzinger, Thomas A., et al. <i>A Marketplace for Cloud Resources</i>. ACM,
    2010, pp. 1–8, doi:<a href="https://doi.org/10.1145/1879021.1879022">10.1145/1879021.1879022</a>.
  short: T.A. Henzinger, A. Tomar, V. Singh, T. Wies, D. Zufferey, in:, ACM, 2010,
    pp. 1–8.
conference:
  end_date: 2010-10-29
  location: Arizona, USA
  name: 'EMSOFT: Embedded Software '
  start_date: 2010-10-24
corr_author: '1'
date_created: 2018-12-11T12:08:33Z
date_published: 2010-10-24T00:00:00Z
date_updated: 2024-10-09T20:54:01Z
day: '24'
ddc:
- '005'
department:
- _id: ToHe
doi: 10.1145/1879021.1879022
file:
- access_level: open_access
  checksum: 7680dd24016810710f7c977bc94f85e9
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:09:42Z
  date_updated: 2020-07-14T12:46:28Z
  file_id: '4767'
  file_name: IST-2012-48-v1+1_A_marketplace_for_cloud_resources.pdf
  file_size: 222626
  relation: main_file
file_date_updated: 2020-07-14T12:46:28Z
has_accepted_license: '1'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Submitted Version
page: 1 - 8
publication_status: published
publisher: ACM
publist_id: '1078'
pubrep_id: '48'
quality_controlled: '1'
scopus_import: 1
status: public
title: A marketplace for cloud resources
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2010'
...
---
_id: '4381'
abstract:
- lang: eng
  text: Cloud computing aims to give users virtually unlimited pay-per-use computing
    resources without the burden of managing the underlying infrastructure. We claim
    that, in order to realize the full potential of cloud computing, the user must
    be presented with a pricing model that offers flexibility at the requirements
    level, such as a choice between different degrees of execution speed and the cloud
    provider must be presented with a programming model that offers flexibility at
    the execution level, such as a choice between different scheduling policies. In
    such a flexible framework, with each job, the user purchases a virtual computer
    with the desired speed and cost characteristics, and the cloud provider can optimize
    the utilization of resources across a stream of jobs from different users. We
    designed a flexible framework to test our hypothesis, which is called FlexPRICE
    (Flexible Provisioning of Resources in a Cloud Environment) and works as follows.
    A user presents a job to the cloud. The cloud finds different schedules to execute
    the job and presents a set of quotes to the user in terms of price and duration
    for the execution. The user then chooses a particular quote and the cloud is obliged
    to execute the job according to the chosen quote. FlexPRICE thus hides the complexity
    of the actual scheduling decisions from the user, but still provides enough flexibility
    to meet the users actual demands. We implemented FlexPRICE in a simulator called
    PRICES that allows us to experiment with our framework. We observe that FlexPRICE
    provides a wide range of execution options-from fast and expensive to slow and
    cheap-- for the whole spectrum of data-intensive and computation-intensive jobs.
    We also observe that the set of quotes computed by FlexPRICE do not vary as the
    number of simultaneous jobs increases.
article_processing_charge: No
author:
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Anmol
  full_name: Tomar, Anmol
  id: 3D8D36B6-F248-11E8-B48F-1D18A9856A87
  last_name: Tomar
- first_name: Vasu
  full_name: Singh, Vasu
  id: 4DAE2708-F248-11E8-B48F-1D18A9856A87
  last_name: Singh
- first_name: Thomas
  full_name: Wies, Thomas
  id: 447BFB88-F248-11E8-B48F-1D18A9856A87
  last_name: Wies
- first_name: Damien
  full_name: Zufferey, Damien
  id: 4397AC76-F248-11E8-B48F-1D18A9856A87
  last_name: Zufferey
  orcid: 0000-0002-3197-8736
citation:
  ama: 'Henzinger TA, Tomar A, Singh V, Wies T, Zufferey D. FlexPRICE: Flexible provisioning
    of resources in a cloud environment. In: IEEE; 2010:83-90. doi:<a href="https://doi.org/10.1109/CLOUD.2010.71">10.1109/CLOUD.2010.71</a>'
  apa: 'Henzinger, T. A., Tomar, A., Singh, V., Wies, T., &#38; Zufferey, D. (2010).
    FlexPRICE: Flexible provisioning of resources in a cloud environment (pp. 83–90).
    Presented at the CLOUD: Cloud Computing, Miami, USA: IEEE. <a href="https://doi.org/10.1109/CLOUD.2010.71">https://doi.org/10.1109/CLOUD.2010.71</a>'
  chicago: 'Henzinger, Thomas A, Anmol Tomar, Vasu Singh, Thomas Wies, and Damien
    Zufferey. “FlexPRICE: Flexible Provisioning of Resources in a Cloud Environment,”
    83–90. IEEE, 2010. <a href="https://doi.org/10.1109/CLOUD.2010.71">https://doi.org/10.1109/CLOUD.2010.71</a>.'
  ieee: 'T. A. Henzinger, A. Tomar, V. Singh, T. Wies, and D. Zufferey, “FlexPRICE:
    Flexible provisioning of resources in a cloud environment,” presented at the CLOUD:
    Cloud Computing, Miami, USA, 2010, pp. 83–90.'
  ista: 'Henzinger TA, Tomar A, Singh V, Wies T, Zufferey D. 2010. FlexPRICE: Flexible
    provisioning of resources in a cloud environment. CLOUD: Cloud Computing, 83–90.'
  mla: 'Henzinger, Thomas A., et al. <i>FlexPRICE: Flexible Provisioning of Resources
    in a Cloud Environment</i>. IEEE, 2010, pp. 83–90, doi:<a href="https://doi.org/10.1109/CLOUD.2010.71">10.1109/CLOUD.2010.71</a>.'
  short: T.A. Henzinger, A. Tomar, V. Singh, T. Wies, D. Zufferey, in:, IEEE, 2010,
    pp. 83–90.
conference:
  end_date: 2010-07-10
  location: Miami, USA
  name: 'CLOUD: Cloud Computing'
  start_date: 2010-07-05
corr_author: '1'
date_created: 2018-12-11T12:08:33Z
date_published: 2010-08-26T00:00:00Z
date_updated: 2024-10-09T20:54:00Z
day: '26'
ddc:
- '004'
department:
- _id: ToHe
doi: 10.1109/CLOUD.2010.71
file:
- access_level: open_access
  checksum: 98e534675339a8e2beca08890d048145
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:16:03Z
  date_updated: 2020-07-14T12:46:28Z
  file_id: '5188'
  file_name: IST-2012-47-v1+1_FlexPRICE-_Flexible_provisioning_of_resources_in_a_cloud_environment.pdf
  file_size: 467436
  relation: main_file
file_date_updated: 2020-07-14T12:46:28Z
has_accepted_license: '1'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Submitted Version
page: 83 - 90
publication_status: published
publisher: IEEE
publist_id: '1077'
pubrep_id: '47'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'FlexPRICE: Flexible provisioning of resources in a cloud environment'
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
year: '2010'
...
---
_id: '4382'
abstract:
- lang: eng
  text: 'Transactional memory (TM) has shown potential to simplify the task of writing
    concurrent programs. Inspired by classical work on databases, formal definitions
    of the semantics of TM executions have been proposed. Many of these definitions
    assumed that accesses to shared data are solely performed through transactions.
    In practice, due to legacy code and concurrency libraries, transactions in a TM
    have to share data with non-transactional operations. The semantics of such interaction,
    while widely discussed by practitioners, lacks a clear formal specification. Those
    interactions can vary, sometimes in subtle ways, between TM implementations and
    underlying memory models. We propose a correctness condition for TMs, parametrized
    opacity, to formally capture the now folklore notion of strong atomicity by stipulating
    the two following intuitive requirements: first, every transaction appears as
    if it is executed instantaneously with respect to other transactions and non-transactional
    operations, and second, non-transactional operations conform to the given underlying
    memory model. We investigate the inherent cost of implementing parametrized opacity.
    We first prove that parametrized opacity requires either instrumenting non-transactional
    operations (for most memory models) or writing to memory by transactions using
    potentially expensive read-modify-write instructions (such as compare-and-swap).
    Then, we show that for a class of practical relaxed memory models, parametrized
    opacity can indeed be implemented with constant-time instrumentation of non-transactional
    writes and no instrumentation of non-transactional reads. We show that, in practice,
    parametrizing the notion of correctness allows developing more efficient TM implementations.'
author:
- first_name: Rachid
  full_name: Guerraoui, Rachid
  last_name: Guerraoui
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Michal
  full_name: Kapalka, Michal
  last_name: Kapalka
- first_name: Vasu
  full_name: Singh, Vasu
  id: 4DAE2708-F248-11E8-B48F-1D18A9856A87
  last_name: Singh
citation:
  ama: 'Guerraoui R, Henzinger TA, Kapalka M, Singh V. Transactions in the jungle.
    In: ACM; 2010:263-272. doi:<a href="https://doi.org/10.1145/1810479.1810529">10.1145/1810479.1810529</a>'
  apa: 'Guerraoui, R., Henzinger, T. A., Kapalka, M., &#38; Singh, V. (2010). Transactions
    in the jungle (pp. 263–272). Presented at the SPAA: ACM Symposium on Parallel
    Algorithms and Architectures, Santorini, Greece: ACM. <a href="https://doi.org/10.1145/1810479.1810529">https://doi.org/10.1145/1810479.1810529</a>'
  chicago: Guerraoui, Rachid, Thomas A Henzinger, Michal Kapalka, and Vasu Singh.
    “Transactions in the Jungle,” 263–72. ACM, 2010. <a href="https://doi.org/10.1145/1810479.1810529">https://doi.org/10.1145/1810479.1810529</a>.
  ieee: 'R. Guerraoui, T. A. Henzinger, M. Kapalka, and V. Singh, “Transactions in
    the jungle,” presented at the SPAA: ACM Symposium on Parallel Algorithms and Architectures,
    Santorini, Greece, 2010, pp. 263–272.'
  ista: 'Guerraoui R, Henzinger TA, Kapalka M, Singh V. 2010. Transactions in the
    jungle. SPAA: ACM Symposium on Parallel Algorithms and Architectures, 263–272.'
  mla: Guerraoui, Rachid, et al. <i>Transactions in the Jungle</i>. ACM, 2010, pp.
    263–72, doi:<a href="https://doi.org/10.1145/1810479.1810529">10.1145/1810479.1810529</a>.
  short: R. Guerraoui, T.A. Henzinger, M. Kapalka, V. Singh, in:, ACM, 2010, pp. 263–272.
conference:
  end_date: 2010-06-15
  location: Santorini, Greece
  name: 'SPAA: ACM Symposium on Parallel Algorithms and Architectures'
  start_date: 2010-06-13
date_created: 2018-12-11T12:08:34Z
date_published: 2010-06-13T00:00:00Z
date_updated: 2024-10-21T06:03:05Z
day: '13'
ddc:
- '005'
department:
- _id: ToHe
doi: 10.1145/1810479.1810529
file:
- access_level: open_access
  checksum: f2ad6c00a6304da34bf21bcdcfd36c4b
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:14:28Z
  date_updated: 2020-07-14T12:46:28Z
  file_id: '5080'
  file_name: IST-2012-46-v1+1_Transactions_in_the_jungle.pdf
  file_size: 246409
  relation: main_file
file_date_updated: 2020-07-14T12:46:28Z
has_accepted_license: '1'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Submitted Version
page: 263 - 272
publication_status: published
publisher: ACM
publist_id: '1076'
pubrep_id: '46'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Transactions in the jungle
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
year: '2010'
...
