---
_id: '11863'
abstract:
- lang: eng
text: "Suppose you buy a new laptop and, simply because you like it so much, you
recommend it to friends, encouraging them to purchase it as well. What would be
an adequate price for the vendor of the laptop to pay for your recommendation?\r\n\r\nPersonal
recommendations like this are of considerable commercial interest, but unlike
in sponsored search auctions there can be no truthful prices. Despite this \"lack
of truthfulness\" the vendor of the product might still decide to pay you for
recommendation e.g. because she wants to (i) provide you with an additional incentive
to actually recommend her or to (ii) increase your satisfaction and/or brand loyalty.
This leads us to investigate a pricing scheme based on the Shapley value [5] that
satisfies certain \"axioms of fairness\". We find that it is vulnerable to manipulations
and show how to overcome these difficulties using the anonymity-proof Shapley
value of [4]."
article_processing_charge: No
author:
- first_name: Paul
full_name: Dütting, Paul
last_name: Dütting
- first_name: Monika H
full_name: Henzinger, Monika H
id: 540c9bbd-f2de-11ec-812d-d04a5be85630
last_name: Henzinger
orcid: 0000-0002-5008-6530
- first_name: Ingmar
full_name: Weber, Ingmar
last_name: Weber
citation:
ama: 'Dütting P, Henzinger M, Weber I. How much is your personal recommendation
worth? In: Proceedings of the 19th International Conference on World Wide Web
. Association for Computing Machinery; 2010:1085-1086. doi:10.1145/1772690.1772816'
apa: 'Dütting, P., Henzinger, M., & Weber, I. (2010). How much is your personal
recommendation worth? In Proceedings of the 19th international conference on
World wide web (pp. 1085–1086). Raleigh, NC, United States: Association for
Computing Machinery. https://doi.org/10.1145/1772690.1772816'
chicago: Dütting, Paul, Monika Henzinger, and Ingmar Weber. “How Much Is Your Personal
Recommendation Worth?” In Proceedings of the 19th International Conference
on World Wide Web , 1085–86. Association for Computing Machinery, 2010. https://doi.org/10.1145/1772690.1772816.
ieee: P. Dütting, M. Henzinger, and I. Weber, “How much is your personal recommendation
worth?,” in Proceedings of the 19th international conference on World wide
web , Raleigh, NC, United States, 2010, pp. 1085–1086.
ista: 'Dütting P, Henzinger M, Weber I. 2010. How much is your personal recommendation
worth? Proceedings of the 19th international conference on World wide web . WWW:
International Conference on World Wide Web, 1085–1086.'
mla: Dütting, Paul, et al. “How Much Is Your Personal Recommendation Worth?” Proceedings
of the 19th International Conference on World Wide Web , Association for Computing
Machinery, 2010, pp. 1085–86, doi:10.1145/1772690.1772816.
short: P. Dütting, M. Henzinger, I. Weber, in:, Proceedings of the 19th International
Conference on World Wide Web , Association for Computing Machinery, 2010, pp.
1085–1086.
conference:
end_date: 2010-04-30
location: Raleigh, NC, United States
name: 'WWW: International Conference on World Wide Web'
start_date: 2010-04-26
date_created: 2022-08-16T09:00:41Z
date_published: 2010-04-01T00:00:00Z
date_updated: 2024-11-06T12:18:53Z
day: '01'
doi: 10.1145/1772690.1772816
extern: '1'
language:
- iso: eng
month: '04'
oa_version: None
page: 1085-1086
publication: 'Proceedings of the 19th international conference on World wide web '
publication_identifier:
isbn:
- '9781605587998'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: How much is your personal recommendation worth?
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2010'
...
---
_id: '11885'
abstract:
- lang: eng
text: Over the last years the h-index has gained popularity as a measure for comparing
the impact of scientists. We investigate if ranking according to the h-index is
stable with respect to (i) different choices of citation databases, (ii) normalizing
citation counts by the number of authors or by removing self-citations, (iii)
small amounts of noise created by randomly removing citations or publications
and (iv) small changes in the definition of the index. In experiments for 5,283
computer scientists and 1,354 physicists we show that although the ranking of
the h-index is stable under most of these changes, it is unstable when different
databases are used. Therefore, comparisons based on the h-index should only be
trusted when the rankings of multiple citation databases agree.
article_processing_charge: No
article_type: original
author:
- first_name: Monika H
full_name: Henzinger, Monika H
id: 540c9bbd-f2de-11ec-812d-d04a5be85630
last_name: Henzinger
orcid: 0000-0002-5008-6530
- first_name: Jacob
full_name: Suñol, Jacob
last_name: Suñol
- first_name: Ingmar
full_name: Weber, Ingmar
last_name: Weber
citation:
ama: Henzinger M, Suñol J, Weber I. The stability of the h-index. Scientometrics.
2010;84(2):465-479. doi:10.1007/s11192-009-0098-7
apa: Henzinger, M., Suñol, J., & Weber, I. (2010). The stability of the h-index.
Scientometrics. Springer Nature. https://doi.org/10.1007/s11192-009-0098-7
chicago: Henzinger, Monika, Jacob Suñol, and Ingmar Weber. “The Stability of the
H-Index.” Scientometrics. Springer Nature, 2010. https://doi.org/10.1007/s11192-009-0098-7.
ieee: M. Henzinger, J. Suñol, and I. Weber, “The stability of the h-index,” Scientometrics,
vol. 84, no. 2. Springer Nature, pp. 465–479, 2010.
ista: Henzinger M, Suñol J, Weber I. 2010. The stability of the h-index. Scientometrics.
84(2), 465–479.
mla: Henzinger, Monika, et al. “The Stability of the H-Index.” Scientometrics,
vol. 84, no. 2, Springer Nature, 2010, pp. 465–79, doi:10.1007/s11192-009-0098-7.
short: M. Henzinger, J. Suñol, I. Weber, Scientometrics 84 (2010) 465–479.
date_created: 2022-08-17T07:51:23Z
date_published: 2010-08-01T00:00:00Z
date_updated: 2024-11-06T12:22:20Z
day: '01'
doi: 10.1007/s11192-009-0098-7
extern: '1'
intvolume: ' 84'
issue: '2'
language:
- iso: eng
month: '08'
oa_version: None
page: 465-479
publication: Scientometrics
publication_identifier:
eissn:
- 1588-2861
issn:
- 0138-9130
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: The stability of the h-index
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 84
year: '2010'
...
---
_id: '11975'
abstract:
- lang: eng
text: A new method was developed for the quantitative analysis of steryl glycosides
in biodiesel (fatty acid methyl esters). This method is much more sensitive than
existing methods and has minimum limits of quantification of 50 μg/kg, compared
to previously published minimum limits of quantification of about 15 mg/kg. The
analysis is based on gas chromatography–mass spectroscopy determination of simple
pre-treated and silylated samples via single ion monitoring at 147, 204, 217 m/z,
which are specific ions for the silylated sugar moiety. Quantification was carried
out using cholesteryl β-d-glucopyranoside as internal standard. The modified synthesis
and purification of the internal standard is also presented as well as the characterization
by NMR and mass spectroscopy. The advantage of the method compared with other
approaches is the simplified sample preparation avoiding extra pre-treatment steps
coupled with complete derivatization of the sugar hydroxyl groups by using N,O-bis(trimethylsilyl)acetamide
with 5% trimethylchlorosilane as derivatization reagent. On the given conditions
high recovery rates ≥89% can be obtained. Evaluation of lab specific variance
and intermediate precision underline the robustness of the method which will be
further assessed by Round robin tests.
article_processing_charge: No
article_type: original
author:
- first_name: Bartholomäus
full_name: Pieber, Bartholomäus
id: 93e5e5b2-0da6-11ed-8a41-af589a024726
last_name: Pieber
orcid: 0000-0001-8689-388X
- first_name: Sigurd
full_name: Schober, Sigurd
last_name: Schober
- first_name: Christoph
full_name: Goebl, Christoph
last_name: Goebl
- first_name: Martin
full_name: Mittelbach, Martin
last_name: Mittelbach
citation:
ama: Pieber B, Schober S, Goebl C, Mittelbach M. Novel sensitive determination of
steryl glycosides in biodiesel by gas chromatography-mass spectroscopy. Journal
of Chromatography A. 2010;1217(42):6555-6561. doi:10.1016/j.chroma.2010.08.006
apa: Pieber, B., Schober, S., Goebl, C., & Mittelbach, M. (2010). Novel sensitive
determination of steryl glycosides in biodiesel by gas chromatography-mass spectroscopy.
Journal of Chromatography A. Elsevier. https://doi.org/10.1016/j.chroma.2010.08.006
chicago: Pieber, Bartholomäus, Sigurd Schober, Christoph Goebl, and Martin Mittelbach.
“Novel Sensitive Determination of Steryl Glycosides in Biodiesel by Gas Chromatography-Mass
Spectroscopy.” Journal of Chromatography A. Elsevier, 2010. https://doi.org/10.1016/j.chroma.2010.08.006.
ieee: B. Pieber, S. Schober, C. Goebl, and M. Mittelbach, “Novel sensitive determination
of steryl glycosides in biodiesel by gas chromatography-mass spectroscopy,” Journal
of Chromatography A, vol. 1217, no. 42. Elsevier, pp. 6555–6561, 2010.
ista: Pieber B, Schober S, Goebl C, Mittelbach M. 2010. Novel sensitive determination
of steryl glycosides in biodiesel by gas chromatography-mass spectroscopy. Journal
of Chromatography A. 1217(42), 6555–6561.
mla: Pieber, Bartholomäus, et al. “Novel Sensitive Determination of Steryl Glycosides
in Biodiesel by Gas Chromatography-Mass Spectroscopy.” Journal of Chromatography
A, vol. 1217, no. 42, Elsevier, 2010, pp. 6555–61, doi:10.1016/j.chroma.2010.08.006.
short: B. Pieber, S. Schober, C. Goebl, M. Mittelbach, Journal of Chromatography
A 1217 (2010) 6555–6561.
date_created: 2022-08-25T10:43:43Z
date_published: 2010-10-15T00:00:00Z
date_updated: 2023-02-21T10:09:59Z
day: '15'
doi: 10.1016/j.chroma.2010.08.006
extern: '1'
external_id:
pmid:
- '20846658'
intvolume: ' 1217'
issue: '42'
language:
- iso: eng
month: '10'
oa_version: None
page: 6555-6561
pmid: 1
publication: Journal of Chromatography A
publication_identifier:
issn:
- 0021-9673
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Novel sensitive determination of steryl glycosides in biodiesel by gas chromatography-mass
spectroscopy
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1217
year: '2010'
...
---
OA_place: repository
OA_type: green
_id: '22023'
abstract:
- lang: eng
text: "We consider the focusing energy-critical nonlinear Schrödinger equation iut
+ ∆u = −|u|\r\n4 d−2 u in dimensions d ≥ 5. We prove that if a maximal-lifespan
solution u : I × Rd → C obeys supt∈I k∇u(t)k2 < k∇Wk2, then it is global and scatters
both forward and backward in time. Here W denotes the ground state, which is a
stationary solution of the equation. In\r\nparticular, if a solution has both
energy and kinetic energy less than those\r\nof the ground state W at some point
in time, then the solution is global and\r\nscatters. We also show that any solution
that blows up with bounded kinetic\r\nenergy must concentrate at least the kinetic
energy of the ground state. Similar\r\nresults were obtained by Kenig and Merle
in [17, 18] for spherically symmetric\r\ninitial data and dimensions d = 3, 4,
5."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Rowan
full_name: Killip, Rowan
last_name: Killip
- first_name: Monica
full_name: Visan, Monica
id: 056daca0-b8d1-11f0-964f-f91054abf8ca
last_name: Visan
citation:
ama: Killip R, Vişan M. The focusing energy-critical nonlinear Schrödinger equation
in dimensions five and higher. American Journal of Mathematics. 2010;132(2):361-424.
doi:10.1353/ajm.0.0107
apa: Killip, R., & Vişan, M. (2010). The focusing energy-critical nonlinear
Schrödinger equation in dimensions five and higher. American Journal of Mathematics.
Johns Hopkins University Press. https://doi.org/10.1353/ajm.0.0107
chicago: Killip, Rowan, and Monica Vişan. “The Focusing Energy-Critical Nonlinear
Schrödinger Equation in Dimensions Five and Higher.” American Journal of Mathematics.
Johns Hopkins University Press, 2010. https://doi.org/10.1353/ajm.0.0107.
ieee: R. Killip and M. Vişan, “The focusing energy-critical nonlinear Schrödinger
equation in dimensions five and higher,” American Journal of Mathematics,
vol. 132, no. 2. Johns Hopkins University Press, pp. 361–424, 2010.
ista: Killip R, Vişan M. 2010. The focusing energy-critical nonlinear Schrödinger
equation in dimensions five and higher. American Journal of Mathematics. 132(2),
361–424.
mla: Killip, Rowan, and Monica Vişan. “The Focusing Energy-Critical Nonlinear Schrödinger
Equation in Dimensions Five and Higher.” American Journal of Mathematics,
vol. 132, no. 2, Johns Hopkins University Press, 2010, pp. 361–424, doi:10.1353/ajm.0.0107.
short: R. Killip, M. Vişan, American Journal of Mathematics 132 (2010) 361–424.
date_created: 2026-06-19T07:31:39Z
date_published: 2010-03-31T00:00:00Z
date_updated: 2026-06-19T10:24:15Z
day: '31'
doi: 10.1353/ajm.0.0107
extern: '1'
external_id:
arxiv:
- '0804.1018'
intvolume: ' 132'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.0804.1018
month: '03'
oa: 1
oa_version: Preprint
page: 361-424
publication: American Journal of Mathematics
publication_identifier:
eissn:
- 1080-6377
issn:
- 0002-9327
publication_status: published
publisher: Johns Hopkins University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: The focusing energy-critical nonlinear Schrödinger equation in dimensions five
and higher
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 132
year: '2010'
...
---
_id: '2309'
abstract:
- lang: eng
text: The importance of chloride ions in cell physiology has not been fully recognized
until recently, in spite of the fact that chloride (Cl-), together with bicarbonate,
is the most abundant free anion in animal cells, and performs or determines fundamental
biological functions in all tissues. For many years it was thought that Cl- was
distributed in thermodynamic equilibrium across the plasma membrane of most cells.
Research carried out during the last couple of decades has led to a dramatic change
in this simplistic view. We now know that most animal cells, neurons included,
exhibit a non-equilibrium distribution of Cl- across their plasma membranes. Over
the last 10 to 15 years, with the growth of molecular biology and the advent of
new optical methods, an enormous amount of exciting new information has become
available on the molecular structure and function of Cl- channels and carriers.
In nerve cells, Cl- channels and carriers play key functional roles in GABA- and
glycine-mediated synaptic inhibition, neuronal growth and development, extracellular
potassium scavenging, sensory-transduction, neurotransmitter uptake and cell volume
control. Disruption of Cl- homeostasis in neurons underlies pathological conditions
such as epilepsy, deafness, imbalance, brain edema and ischemia, pain and neurogenic
inflammation. This book is about how chloride ions are regulated and how they
cross the plasma membrane of neurons. It spans from molecular structure and function
of carriers and channels involved in Cl- transport to their role in various diseases.
* The first comprehensive book on the structure, molecular biology, cell physiology,
and role in diseases of chloride transporters / channels in the nervous system
in almost 20 years * Chloride is the most abundant free anion in animal cells.
THis book summarizes and integrates for the first time the important research
of the past two decades that has shown that Cl- channels and carriers play key
functional roles in GABA- and glycine-mediated synaptic inhibition, neuronal growth
and development, extracellular potassium scavenging, sensory-transduction, neurotransmitter
uptake and cell volume control. * The first book that systematically discusses
the result of disruption of Cl- homeostasis in neurons which underlies pathological
conditions such as epilepsy, deafness, imbalance, brain edema and ischemia, pain
and neurogenic inflammation. * Spanning topics from molecular structure and function
of carriers and channels involved in Cl- transport to their role in various diseases.
* Involves all of the leading researchers in the field. * INcludes an extensive
introductory section that covers basic thermodynamic and kinetics aspects of Cl-
transport, as well as current methods for studying Cl- regulation, spanning from
fluorescent dyes in single cells to knock-out models to make the book available
for a growing population of graduate students and postdocs entering the field.
author:
- first_name: Tobias
full_name: Stauber, Tobias
last_name: Stauber
- first_name: Gaia
full_name: Gaia Novarino
id: 3E57A680-F248-11E8-B48F-1D18A9856A87
last_name: Novarino
orcid: 0000-0002-7673-7178
- first_name: Thomas
full_name: Jentsch, Thomas J
last_name: Jentsch
citation:
ama: 'Stauber T, Novarino G, Jentsch T. The CLC family of chloride channels and
transporters. In: Physiology and Pathology of Chloride Transporters and Channels
in the Nervous System. Elsevier; 2010:209-231. doi:10.1016/B978-0-12-374373-2.00012-1'
apa: Stauber, T., Novarino, G., & Jentsch, T. (2010). The CLC family of chloride
channels and transporters. In Physiology and Pathology of chloride transporters
and channels in the nervous system (pp. 209–231). Elsevier. https://doi.org/10.1016/B978-0-12-374373-2.00012-1
chicago: Stauber, Tobias, Gaia Novarino, and Thomas Jentsch. “The CLC Family of
Chloride Channels and Transporters.” In Physiology and Pathology of Chloride
Transporters and Channels in the Nervous System, 209–31. Elsevier, 2010. https://doi.org/10.1016/B978-0-12-374373-2.00012-1.
ieee: T. Stauber, G. Novarino, and T. Jentsch, “The CLC family of chloride channels
and transporters,” in Physiology and Pathology of chloride transporters and
channels in the nervous system, Elsevier, 2010, pp. 209–231.
ista: 'Stauber T, Novarino G, Jentsch T. 2010.The CLC family of chloride channels
and transporters. In: Physiology and Pathology of chloride transporters and channels
in the nervous system. , 209–231.'
mla: Stauber, Tobias, et al. “The CLC Family of Chloride Channels and Transporters.”
Physiology and Pathology of Chloride Transporters and Channels in the Nervous
System, Elsevier, 2010, pp. 209–31, doi:10.1016/B978-0-12-374373-2.00012-1.
short: T. Stauber, G. Novarino, T. Jentsch, in:, Physiology and Pathology of Chloride
Transporters and Channels in the Nervous System, Elsevier, 2010, pp. 209–231.
date_created: 2018-12-11T11:56:54Z
date_published: 2010-01-01T00:00:00Z
date_updated: 2021-01-12T06:56:41Z
day: '01'
doi: 10.1016/B978-0-12-374373-2.00012-1
extern: 1
month: '01'
page: 209 - 231
publication: Physiology and Pathology of chloride transporters and channels in the
nervous system
publication_status: published
publisher: Elsevier
publist_id: '4616'
quality_controlled: 0
status: public
title: The CLC family of chloride channels and transporters
type: book_chapter
year: '2010'
...
---
_id: '231'
abstract:
- lang: eng
text: Let X be a projective cubic hypersurface of dimension 11 or more, which is
defined over ℚ. We show that X(ℚ) is non-empty provided that the cubic form defining
X can be written as the sum of two forms that share no common variables.
acknowledgement: "EP/E053262/1\tEngineering and Physical Sciences Research Council"
author:
- first_name: Timothy D
full_name: Timothy Browning
id: 35827D50-F248-11E8-B48F-1D18A9856A87
last_name: Browning
orcid: 0000-0002-8314-0177
- first_name: Jean
full_name: Colliot-Thélène, Jean-Louis
last_name: Colliot Thélène
citation:
ama: Browning TD, Colliot Thélène J. Rational points on cubic hypersurfaces that
split off a form. With an appendix by J-L Colliot-Thélène. Compositio Mathematica.
2010;146(4):853-885. doi:10.1112/S0010437X0900459X
apa: Browning, T. D., & Colliot Thélène, J. (2010). Rational points on cubic
hypersurfaces that split off a form. With an appendix by J-L Colliot-Thélène.
Compositio Mathematica. Cambridge University Press. https://doi.org/10.1112/S0010437X0900459X
chicago: Browning, Timothy D, and Jean Colliot Thélène. “Rational Points on Cubic
Hypersurfaces That Split off a Form. With an Appendix by J-L Colliot-Thélène.”
Compositio Mathematica. Cambridge University Press, 2010. https://doi.org/10.1112/S0010437X0900459X.
ieee: T. D. Browning and J. Colliot Thélène, “Rational points on cubic hypersurfaces
that split off a form. With an appendix by J-L Colliot-Thélène,” Compositio
Mathematica, vol. 146, no. 4. Cambridge University Press, pp. 853–885, 2010.
ista: Browning TD, Colliot Thélène J. 2010. Rational points on cubic hypersurfaces
that split off a form. With an appendix by J-L Colliot-Thélène. Compositio Mathematica.
146(4), 853–885.
mla: Browning, Timothy D., and Jean Colliot Thélène. “Rational Points on Cubic Hypersurfaces
That Split off a Form. With an Appendix by J-L Colliot-Thélène.” Compositio
Mathematica, vol. 146, no. 4, Cambridge University Press, 2010, pp. 853–85,
doi:10.1112/S0010437X0900459X.
short: T.D. Browning, J. Colliot Thélène, Compositio Mathematica 146 (2010) 853–885.
date_created: 2018-12-11T11:45:20Z
date_published: 2010-02-15T00:00:00Z
date_updated: 2021-01-12T06:56:41Z
day: '15'
doi: 10.1112/S0010437X0900459X
extern: 1
intvolume: ' 146'
issue: '4'
month: '02'
page: 853 - 885
publication: Compositio Mathematica
publication_status: published
publisher: Cambridge University Press
publist_id: '7673'
quality_controlled: 0
status: public
title: Rational points on cubic hypersurfaces that split off a form. With an appendix
by J-L Colliot-Thélène
type: journal_article
volume: 146
year: '2010'
...
---
_id: '2310'
abstract:
- lang: eng
text: Loss of the endosomal anion transport protein ClC-5 impairs renal endocytosis
and underlies human Dent's disease. ClC-5 is thought to promote endocytosis by
facilitating endosomal acidification through the neutralization of proton pump
currents. However, ClC-5 is a 2 chloride (Cl-)/proton (H+) exchanger rather than
a Cl- channel. We generated mice that carry the uncoupling E211A (unc) mutation
that converts CLC-5 into a pure CL- conductor. Adenosine triphosphate (ATP)-dependent
acidification of renal endosomes was reduced in mice in which ClC-5 was knocked
out, but normal in Clcn5unc mice. However, their proximal tubular endocytosis
was also impaired. Thus, endosomal chloride concentration, which is raised by
CLC-5 in exchange for protons accumulated by the H+-ATPase, may play a role in
endocytosis.
author:
- first_name: Gaia
full_name: Gaia Novarino
id: 3E57A680-F248-11E8-B48F-1D18A9856A87
last_name: Novarino
orcid: 0000-0002-7673-7178
- first_name: Stefanie
full_name: Weinert, Stefanie
last_name: Weinert
- first_name: Gesa
full_name: Rickheit, Gesa
last_name: Rickheit
- first_name: Thomas
full_name: Jentsch, Thomas J
last_name: Jentsch
citation:
ama: Novarino G, Weinert S, Rickheit G, Jentsch T. Endosomal chloride-proton exchange
rather than chloride conductance is crucial for renal endocytosis. Science.
2010;328(5984):1398-1401. doi:10.1126/science.1188070
apa: Novarino, G., Weinert, S., Rickheit, G., & Jentsch, T. (2010). Endosomal
chloride-proton exchange rather than chloride conductance is crucial for renal
endocytosis. Science. American Association for the Advancement of Science.
https://doi.org/10.1126/science.1188070
chicago: Novarino, Gaia, Stefanie Weinert, Gesa Rickheit, and Thomas Jentsch. “Endosomal
Chloride-Proton Exchange Rather than Chloride Conductance Is Crucial for Renal
Endocytosis.” Science. American Association for the Advancement of Science,
2010. https://doi.org/10.1126/science.1188070.
ieee: G. Novarino, S. Weinert, G. Rickheit, and T. Jentsch, “Endosomal chloride-proton
exchange rather than chloride conductance is crucial for renal endocytosis,” Science,
vol. 328, no. 5984. American Association for the Advancement of Science, pp. 1398–1401,
2010.
ista: Novarino G, Weinert S, Rickheit G, Jentsch T. 2010. Endosomal chloride-proton
exchange rather than chloride conductance is crucial for renal endocytosis. Science.
328(5984), 1398–1401.
mla: Novarino, Gaia, et al. “Endosomal Chloride-Proton Exchange Rather than Chloride
Conductance Is Crucial for Renal Endocytosis.” Science, vol. 328, no. 5984,
American Association for the Advancement of Science, 2010, pp. 1398–401, doi:10.1126/science.1188070.
short: G. Novarino, S. Weinert, G. Rickheit, T. Jentsch, Science 328 (2010) 1398–1401.
date_created: 2018-12-11T11:56:55Z
date_published: 2010-06-11T00:00:00Z
date_updated: 2021-01-12T06:56:42Z
day: '11'
doi: 10.1126/science.1188070
extern: 1
intvolume: ' 328'
issue: '5984'
month: '06'
page: 1398 - 1401
publication: Science
publication_status: published
publisher: American Association for the Advancement of Science
publist_id: '4617'
quality_controlled: 0
status: public
title: Endosomal chloride-proton exchange rather than chloride conductance is crucial
for renal endocytosis
type: journal_article
volume: 328
year: '2010'
...
---
_id: '2311'
abstract:
- lang: eng
text: Inactivation of the mainly endosomal 2Cl-/H+- exchanger ClC-5 severely impairs
endocytosis in renal proximal tubules and underlies the human kidney stone disorder
Dent's disease. In heterologous expression systems, interaction of the E3 ubiquitin
ligasesWWP2and Nedd4-2 with a "PY-motif" in the cytoplasmic C terminus
of ClC-5 stimulates its internalization from the plasma membrane and may influence
receptor-mediated endocytosis. We asked whether this interaction is relevant in
vivo and generated mice in which the PY-motif was destroyed by a point mutation.
Unlike ClC-5 knock-out mice, these knock-in mice displayed neither low molecular
weight proteinuria nor hyperphosphaturia, and both receptor-mediated and fluid-phase
endocytosis were normal. The abundances and localizations of the endocytic receptor
megalin and of the Na+-coupled phosphate transporter NaPi-2a (Npt2) were not changed,
either. To explore whether the discrepancy in results from heterologous expression
studies might be due to heteromerization of ClC-5 with ClC-3 or ClC-4 in vivo,
we studied knock-in mice additionally deleted for those related transporters.
Disruption of neither ClC-3 nor ClC-4 led to proteinuria or impaired proximal
tubular endocytosis by itself, nor in combination with the PY-mutant of ClC-5.
Endocytosis of cells lacking ClC-5 was not impaired further when ClC-3 or ClC-4
was additionally deleted. We conclude that ClC-5 is unique among CLC proteins
in being crucial for proximal tubular endocytosis and that PY-motif-dependent
ubiquitylation of ClC-5 is dispensable for this role.
author:
- first_name: Gesa
full_name: Rickheit, Gesa
last_name: Rickheit
- first_name: Lena
full_name: Wartosch, Lena
last_name: Wartosch
- first_name: Sven
full_name: Schaffer, Sven
last_name: Schaffer
- first_name: Sandra
full_name: Stobrawa, Sandra M
last_name: Stobrawa
- first_name: Gaia
full_name: Gaia Novarino
id: 3E57A680-F248-11E8-B48F-1D18A9856A87
last_name: Novarino
orcid: 0000-0002-7673-7178
- first_name: Stefanie
full_name: Weinert, Stefanie
last_name: Weinert
- first_name: Thomas
full_name: Jentsch, Thomas J
last_name: Jentsch
citation:
ama: Rickheit G, Wartosch L, Schaffer S, et al. Role of ClC-5 in renal endocytosis
is unique among ClC exchangers and does not require PY-motif-dependent ubiquitylation.
Journal of Biological Chemistry. 2010;285(23):17595-17603. doi:10.1074/jbc.M110.115600
apa: Rickheit, G., Wartosch, L., Schaffer, S., Stobrawa, S., Novarino, G., Weinert,
S., & Jentsch, T. (2010). Role of ClC-5 in renal endocytosis is unique among
ClC exchangers and does not require PY-motif-dependent ubiquitylation. Journal
of Biological Chemistry. American Society for Biochemistry and Molecular Biology.
https://doi.org/10.1074/jbc.M110.115600
chicago: Rickheit, Gesa, Lena Wartosch, Sven Schaffer, Sandra Stobrawa, Gaia Novarino,
Stefanie Weinert, and Thomas Jentsch. “Role of ClC-5 in Renal Endocytosis Is Unique
among ClC Exchangers and Does Not Require PY-Motif-Dependent Ubiquitylation.”
Journal of Biological Chemistry. American Society for Biochemistry and
Molecular Biology, 2010. https://doi.org/10.1074/jbc.M110.115600.
ieee: G. Rickheit et al., “Role of ClC-5 in renal endocytosis is unique among
ClC exchangers and does not require PY-motif-dependent ubiquitylation,” Journal
of Biological Chemistry, vol. 285, no. 23. American Society for Biochemistry
and Molecular Biology, pp. 17595–17603, 2010.
ista: Rickheit G, Wartosch L, Schaffer S, Stobrawa S, Novarino G, Weinert S, Jentsch
T. 2010. Role of ClC-5 in renal endocytosis is unique among ClC exchangers and
does not require PY-motif-dependent ubiquitylation. Journal of Biological Chemistry.
285(23), 17595–17603.
mla: Rickheit, Gesa, et al. “Role of ClC-5 in Renal Endocytosis Is Unique among
ClC Exchangers and Does Not Require PY-Motif-Dependent Ubiquitylation.” Journal
of Biological Chemistry, vol. 285, no. 23, American Society for Biochemistry
and Molecular Biology, 2010, pp. 17595–603, doi:10.1074/jbc.M110.115600.
short: G. Rickheit, L. Wartosch, S. Schaffer, S. Stobrawa, G. Novarino, S. Weinert,
T. Jentsch, Journal of Biological Chemistry 285 (2010) 17595–17603.
date_created: 2018-12-11T11:56:55Z
date_published: 2010-06-04T00:00:00Z
date_updated: 2021-01-12T06:56:42Z
day: '04'
doi: 10.1074/jbc.M110.115600
extern: 1
intvolume: ' 285'
issue: '23'
month: '06'
page: 17595 - 17603
publication: Journal of Biological Chemistry
publication_status: published
publisher: American Society for Biochemistry and Molecular Biology
publist_id: '4618'
quality_controlled: 0
status: public
title: Role of ClC-5 in renal endocytosis is unique among ClC exchangers and does
not require PY-motif-dependent ubiquitylation
type: journal_article
volume: 285
year: '2010'
...
---
_id: '232'
abstract:
- lang: eng
text: We study the average order of the divisor function, as it ranges over the
values of binary quartic forms that are reducible over ℚ.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Régis
full_name: De La Bretèche, Régis
last_name: De La Bretèche
- first_name: Timothy D
full_name: Browning, Timothy D
id: 35827D50-F248-11E8-B48F-1D18A9856A87
last_name: Browning
orcid: 0000-0002-8314-0177
citation:
ama: De La Bretèche R, Browning TD. Le problème des diviseurs pour des formes binaires
de degré 4. Journal fur die Reine und Angewandte Mathematik. 2010;(646):1-44.
doi:10.1515/CRELLE.2010.064
apa: De La Bretèche, R., & Browning, T. D. (2010). Le problème des diviseurs
pour des formes binaires de degré 4. Journal Fur Die Reine Und Angewandte Mathematik.
Walter de Gruyter. https://doi.org/10.1515/CRELLE.2010.064
chicago: De La Bretèche, Régis, and Timothy D Browning. “Le Problème Des Diviseurs
Pour Des Formes Binaires de Degré 4.” Journal Fur Die Reine Und Angewandte
Mathematik. Walter de Gruyter, 2010. https://doi.org/10.1515/CRELLE.2010.064.
ieee: R. De La Bretèche and T. D. Browning, “Le problème des diviseurs pour des
formes binaires de degré 4,” Journal fur die Reine und Angewandte Mathematik,
no. 646. Walter de Gruyter, pp. 1–44, 2010.
ista: De La Bretèche R, Browning TD. 2010. Le problème des diviseurs pour des formes
binaires de degré 4. Journal fur die Reine und Angewandte Mathematik. (646), 1–44.
mla: De La Bretèche, Régis, and Timothy D. Browning. “Le Problème Des Diviseurs
Pour Des Formes Binaires de Degré 4.” Journal Fur Die Reine Und Angewandte
Mathematik, no. 646, Walter de Gruyter, 2010, pp. 1–44, doi:10.1515/CRELLE.2010.064.
short: R. De La Bretèche, T.D. Browning, Journal Fur Die Reine Und Angewandte Mathematik
(2010) 1–44.
date_created: 2018-12-11T11:45:20Z
date_published: 2010-09-17T00:00:00Z
date_updated: 2021-01-12T06:56:45Z
day: '17'
doi: 10.1515/CRELLE.2010.064
extern: '1'
external_id:
arxiv:
- '0808.2340'
issue: '646'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/0808.2340
month: '09'
oa: 1
oa_version: Preprint
page: 1 - 44
publication: Journal fur die Reine und Angewandte Mathematik
publication_status: published
publisher: Walter de Gruyter
publist_id: '7672'
quality_controlled: '1'
status: public
title: Le problème des diviseurs pour des formes binaires de degré 4
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2010'
...
---
_id: '2322'
author:
- first_name: Rupert
full_name: Frank, Rupert L
last_name: Frank
- first_name: Élliott
full_name: Lieb, Élliott H
last_name: Lieb
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: 'Frank R, Lieb É, Seiringer R. Equivalence of Sobolev inequalities and Lieb-Thirring
inequalities. In: World Scientific Publishing; 2010:523-535. doi:10.1142/9789814304634_0045 '
apa: 'Frank, R., Lieb, É., & Seiringer, R. (2010). Equivalence of Sobolev inequalities
and Lieb-Thirring inequalities (pp. 523–535). Presented at the ICMP: International
Congress on Mathematical Physics, World Scientific Publishing. https://doi.org/10.1142/9789814304634_0045 '
chicago: Frank, Rupert, Élliott Lieb, and Robert Seiringer. “ Equivalence of Sobolev
Inequalities and Lieb-Thirring Inequalities,” 523–35. World Scientific Publishing,
2010. https://doi.org/10.1142/9789814304634_0045
.
ieee: 'R. Frank, É. Lieb, and R. Seiringer, “ Equivalence of Sobolev inequalities
and Lieb-Thirring inequalities,” presented at the ICMP: International Congress
on Mathematical Physics, 2010, pp. 523–535.'
ista: 'Frank R, Lieb É, Seiringer R. 2010. Equivalence of Sobolev inequalities
and Lieb-Thirring inequalities. ICMP: International Congress on Mathematical Physics,
523–535.'
mla: Frank, Rupert, et al. Equivalence of Sobolev Inequalities and Lieb-Thirring
Inequalities. World Scientific Publishing, 2010, pp. 523–35, doi:10.1142/9789814304634_0045 .
short: R. Frank, É. Lieb, R. Seiringer, in:, World Scientific Publishing, 2010,
pp. 523–535.
conference:
name: 'ICMP: International Congress on Mathematical Physics'
date_created: 2018-12-11T11:56:59Z
date_published: 2010-03-31T00:00:00Z
date_updated: 2021-01-12T06:56:46Z
day: '31'
doi: '10.1142/9789814304634_0045 '
extern: 1
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/0909.5449
month: '03'
oa: 1
page: 523 - 535
publication_status: published
publisher: World Scientific Publishing
publist_id: '4605'
quality_controlled: 0
status: public
title: ' Equivalence of Sobolev inequalities and Lieb-Thirring inequalities'
type: conference
year: '2010'
...
---
_id: '2323'
abstract:
- lang: eng
text: Since the first experimental realization of Bose-Einstein condensation in
cold atomic gases in 1995 there has been a surge of activity in this field. Ingenious
experiments have allowed us to probe matter close to zero temperature and reveal
some of the fascinating effects quantum mechanics has bestowed on nature. It is
a challenge for mathematical physicists to understand these various phenomena
from first principles, that is, starting from the underlying many-body Schrödinger
equation. Recent progress in this direction concerns mainly equilibrium properties
of dilute, cold quantum gases. We shall explain some of the results in this article,
and describe the mathematics involved in understanding these phenomena. Topics
include the ground state energy and the free energy at positive temperature, the
effect of interparticle interaction on the critical temperature for Bose-Einstein
condensation, as well as the occurrence of superfluidity and quantized vortices
in rapidly rotating gases.
author:
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: 'Seiringer R. Hot topics on cold gases. In: World Scientific Publishing; 2010:231-245.
doi:10.1142/9789814304634_0013'
apa: 'Seiringer, R. (2010). Hot topics on cold gases (pp. 231–245). Presented at
the ICMP: International Congress on Mathematical Physics, World Scientific Publishing.
https://doi.org/10.1142/9789814304634_0013'
chicago: Seiringer, Robert. “Hot Topics on Cold Gases,” 231–45. World Scientific
Publishing, 2010. https://doi.org/10.1142/9789814304634_0013.
ieee: 'R. Seiringer, “Hot topics on cold gases,” presented at the ICMP: International
Congress on Mathematical Physics, 2010, pp. 231–245.'
ista: 'Seiringer R. 2010. Hot topics on cold gases. ICMP: International Congress
on Mathematical Physics, 231–245.'
mla: Seiringer, Robert. Hot Topics on Cold Gases. World Scientific Publishing,
2010, pp. 231–45, doi:10.1142/9789814304634_0013.
short: R. Seiringer, in:, World Scientific Publishing, 2010, pp. 231–245.
conference:
name: 'ICMP: International Congress on Mathematical Physics'
date_created: 2018-12-11T11:56:59Z
date_published: 2010-03-31T00:00:00Z
date_updated: 2021-01-12T06:56:46Z
day: '31'
doi: 10.1142/9789814304634_0013
extern: 1
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/0908.3686
month: '03'
oa: 1
page: 231 - 245
publication_status: published
publisher: World Scientific Publishing
publist_id: '4604'
quality_controlled: 0
status: public
title: Hot topics on cold gases
type: conference
year: '2010'
...
---
_id: '2324'
abstract:
- lang: eng
text: We determine the sharp constant in the Hardy inequality for fractional Sobolev
spaces on half-spaces. Our proof relies on a nonlinear and nonlocal version of
the ground state representation.
alternative_title:
- International Mathematical Series
author:
- first_name: Rupert
full_name: Frank, Rupert L
last_name: Frank
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: 'Frank R, Seiringer R. Sharp fractional Hardy inequalities in half-spaces.
In: Around the Research of Vladimir Maz’ya I. Vol 11. Springer; 2010:161-167.
doi:10.1007/978-1-4419-1341-8_6'
apa: Frank, R., & Seiringer, R. (2010). Sharp fractional Hardy inequalities
in half-spaces. In Around the Research of Vladimir Maz’ya I (Vol. 11, pp.
161–167). Springer. https://doi.org/10.1007/978-1-4419-1341-8_6
chicago: Frank, Rupert, and Robert Seiringer. “Sharp Fractional Hardy Inequalities
in Half-Spaces.” In Around the Research of Vladimir Maz’ya I, 11:161–67.
Springer, 2010. https://doi.org/10.1007/978-1-4419-1341-8_6.
ieee: R. Frank and R. Seiringer, “Sharp fractional Hardy inequalities in half-spaces,”
in Around the Research of Vladimir Maz’ya I, vol. 11, Springer, 2010, pp.
161–167.
ista: 'Frank R, Seiringer R. 2010.Sharp fractional Hardy inequalities in half-spaces.
In: Around the Research of Vladimir Maz’ya I. International Mathematical Series,
vol. 11, 161–167.'
mla: Frank, Rupert, and Robert Seiringer. “Sharp Fractional Hardy Inequalities in
Half-Spaces.” Around the Research of Vladimir Maz’ya I, vol. 11, Springer,
2010, pp. 161–67, doi:10.1007/978-1-4419-1341-8_6.
short: R. Frank, R. Seiringer, in:, Around the Research of Vladimir Maz’ya I, Springer,
2010, pp. 161–167.
date_created: 2018-12-11T11:56:59Z
date_published: 2010-01-01T00:00:00Z
date_updated: 2021-01-12T06:56:46Z
day: '01'
doi: 10.1007/978-1-4419-1341-8_6
extern: 1
intvolume: ' 11'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/0906.1561
month: '01'
oa: 1
page: 161 - 167
publication: Around the Research of Vladimir Maz'ya I
publication_status: published
publisher: Springer
publist_id: '4603'
quality_controlled: 0
status: public
title: Sharp fractional Hardy inequalities in half-spaces
type: book_chapter
volume: 11
year: '2010'
...
---
_id: '2389'
abstract:
- lang: eng
text: We study the eigenvalues of Schrödinger type operators T + λV and their asymptotic
behavior in the small coupling limit λ → 0, in the case where the symbol of the
kinetic energy, T (p), strongly degenerates on a non-trivial manifold of codimension
one.
author:
- first_name: Christian
full_name: Hainzl, Christian
last_name: Hainzl
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: Hainzl C, Seiringer R. Asymptotic behavior of eigenvalues of Schrödinger type
operators with degenerate kinetic energy. Mathematische Nachrichten. 2010;283(3):489-499.
doi:10.1002/mana.200810195
apa: Hainzl, C., & Seiringer, R. (2010). Asymptotic behavior of eigenvalues
of Schrödinger type operators with degenerate kinetic energy. Mathematische
Nachrichten. Wiley-Blackwell. https://doi.org/10.1002/mana.200810195
chicago: Hainzl, Christian, and Robert Seiringer. “Asymptotic Behavior of Eigenvalues
of Schrödinger Type Operators with Degenerate Kinetic Energy.” Mathematische
Nachrichten. Wiley-Blackwell, 2010. https://doi.org/10.1002/mana.200810195.
ieee: C. Hainzl and R. Seiringer, “Asymptotic behavior of eigenvalues of Schrödinger
type operators with degenerate kinetic energy,” Mathematische Nachrichten,
vol. 283, no. 3. Wiley-Blackwell, pp. 489–499, 2010.
ista: Hainzl C, Seiringer R. 2010. Asymptotic behavior of eigenvalues of Schrödinger
type operators with degenerate kinetic energy. Mathematische Nachrichten. 283(3),
489–499.
mla: Hainzl, Christian, and Robert Seiringer. “Asymptotic Behavior of Eigenvalues
of Schrödinger Type Operators with Degenerate Kinetic Energy.” Mathematische
Nachrichten, vol. 283, no. 3, Wiley-Blackwell, 2010, pp. 489–99, doi:10.1002/mana.200810195.
short: C. Hainzl, R. Seiringer, Mathematische Nachrichten 283 (2010) 489–499.
date_created: 2018-12-11T11:57:23Z
date_published: 2010-03-01T00:00:00Z
date_updated: 2021-01-12T06:57:11Z
day: '01'
doi: 10.1002/mana.200810195
extern: 1
intvolume: ' 283'
issue: '3'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/0808.3737
month: '03'
oa: 1
page: 489 - 499
publication: Mathematische Nachrichten
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4537'
quality_controlled: 0
status: public
title: Asymptotic behavior of eigenvalues of Schrödinger type operators with degenerate
kinetic energy
type: journal_article
volume: 283
year: '2010'
...
---
_id: '2392'
abstract:
- lang: eng
text: The binding of polarons, or its absence, is an old and subtle topic. Here
we prove two things rigorously. First, the transition from many-body collapse
to the existence of a thermodynamic limit for N polarons occurs precisely at U=2α,
where U is the electronic Coulomb repulsion and α is the polaron coupling constant.
Second, if U is large enough, there is no multipolaron binding of any kind. Considering
the known fact that there is binding for some U>2α, these conclusions are not
obvious and their proof has been an open problem for some time.
author:
- first_name: Rupert
full_name: Frank, Rupert L
last_name: Frank
- first_name: Élliott
full_name: Lieb, Élliott H
last_name: Lieb
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
- first_name: Lawrence
full_name: Thomas, Lawrence E
last_name: Thomas
citation:
ama: Frank R, Lieb É, Seiringer R, Thomas L. Bipolaron and N-polaron binding energies.
Physical Review Letters. 2010;104(21). doi:10.1103/PhysRevLett.104.210402
apa: Frank, R., Lieb, É., Seiringer, R., & Thomas, L. (2010). Bipolaron and
N-polaron binding energies. Physical Review Letters. American Physical
Society. https://doi.org/10.1103/PhysRevLett.104.210402
chicago: Frank, Rupert, Élliott Lieb, Robert Seiringer, and Lawrence Thomas. “Bipolaron
and N-Polaron Binding Energies.” Physical Review Letters. American Physical
Society, 2010. https://doi.org/10.1103/PhysRevLett.104.210402.
ieee: R. Frank, É. Lieb, R. Seiringer, and L. Thomas, “Bipolaron and N-polaron binding
energies,” Physical Review Letters, vol. 104, no. 21. American Physical
Society, 2010.
ista: Frank R, Lieb É, Seiringer R, Thomas L. 2010. Bipolaron and N-polaron binding
energies. Physical Review Letters. 104(21).
mla: Frank, Rupert, et al. “Bipolaron and N-Polaron Binding Energies.” Physical
Review Letters, vol. 104, no. 21, American Physical Society, 2010, doi:10.1103/PhysRevLett.104.210402.
short: R. Frank, É. Lieb, R. Seiringer, L. Thomas, Physical Review Letters 104 (2010).
date_created: 2018-12-11T11:57:24Z
date_published: 2010-01-01T00:00:00Z
date_updated: 2021-01-12T06:57:12Z
day: '01'
doi: 10.1103/PhysRevLett.104.210402
extern: 1
intvolume: ' 104'
issue: '21'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1004.1196
month: '01'
oa: 1
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '4536'
quality_controlled: 0
status: public
title: Bipolaron and N-polaron binding energies
type: journal_article
volume: 104
year: '2010'
...
---
_id: '2409'
abstract:
- lang: eng
text: "Background: The availability of many gene alignments with overlapping taxon
sets raises the question of which strategy is the best to infer species phylogenies
from multiple gene information. Methods and programs abound that use the gene
alignment in different ways to reconstruct the species tree. In particular, different
methods combine the original data at different points along the way from the underlying
sequences to the final tree. Accordingly, they are classified into superalignment,
supertree and medium-level approaches. Here, we present a simulation study to
compare different methods from each of these three approaches.\r\n\r\nResults:
We observe that superalignment methods usually outperform the other approaches
over a wide range of parameters including sparse data and gene-specific evolutionary
parameters. In the presence of high incongruency among gene trees, however, other
combination methods show better performance than the superalignment approach.
Surprisingly, some supertree and medium-level methods exhibit, on average, worse
results than a single gene phylogeny with complete taxon information.\r\n\r\nConclusions:
For some methods, using the reconstructed gene tree as an estimation of the species
tree is superior to the combination of incomplete information. Superalignment
usually performs best since it is less susceptible to stochastic error. Supertree
methods can outperform superalignment in the presence of gene-tree conflict."
acknowledgement: Financial support from the Wiener Wissenschafts-, Forschungs- and
Technologiefonds (WWTF) is greatly appreciated. A.v.H. acknowledges support from
the German Research Foundation (DFG, SPP-1174).
article_number: '37'
article_processing_charge: No
author:
- first_name: Anne
full_name: Kupczok, Anne
id: 2BB22BC2-F248-11E8-B48F-1D18A9856A87
last_name: Kupczok
- first_name: Heiko
full_name: Schmidt, Heiko
last_name: Schmidt
- first_name: Arndt
full_name: Von Haeseler, Arndt
last_name: Von Haeseler
citation:
ama: Kupczok A, Schmidt H, Von Haeseler A. Accuracy of phylogeny reconstruction
methods combining overlapping gene data sets. Algorithms for Molecular Biology.
2010;5(1). doi:10.1186/1748-7188-5-37
apa: Kupczok, A., Schmidt, H., & Von Haeseler, A. (2010). Accuracy of phylogeny
reconstruction methods combining overlapping gene data sets. Algorithms for
Molecular Biology. BioMed Central. https://doi.org/10.1186/1748-7188-5-37
chicago: Kupczok, Anne, Heiko Schmidt, and Arndt Von Haeseler. “Accuracy of Phylogeny
Reconstruction Methods Combining Overlapping Gene Data Sets.” Algorithms for
Molecular Biology. BioMed Central, 2010. https://doi.org/10.1186/1748-7188-5-37.
ieee: A. Kupczok, H. Schmidt, and A. Von Haeseler, “Accuracy of phylogeny reconstruction
methods combining overlapping gene data sets,” Algorithms for Molecular Biology,
vol. 5, no. 1. BioMed Central, 2010.
ista: Kupczok A, Schmidt H, Von Haeseler A. 2010. Accuracy of phylogeny reconstruction
methods combining overlapping gene data sets. Algorithms for Molecular Biology.
5(1), 37.
mla: Kupczok, Anne, et al. “Accuracy of Phylogeny Reconstruction Methods Combining
Overlapping Gene Data Sets.” Algorithms for Molecular Biology, vol. 5,
no. 1, 37, BioMed Central, 2010, doi:10.1186/1748-7188-5-37.
short: A. Kupczok, H. Schmidt, A. Von Haeseler, Algorithms for Molecular Biology
5 (2010).
date_created: 2018-12-11T11:57:30Z
date_published: 2010-12-06T00:00:00Z
date_updated: 2025-09-30T09:48:29Z
day: '06'
ddc:
- '576'
department:
- _id: JoBo
doi: 10.1186/1748-7188-5-37
external_id:
isi:
- '000286183400001'
file:
- access_level: open_access
checksum: e2497285388bc4da629bafb46662eb43
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:09:16Z
date_updated: 2020-07-14T12:45:40Z
file_id: '4739'
file_name: IST-2018-939-v1+1_2010_Kupczok_Accuracy_of.pdf
file_size: 723929
relation: main_file
file_date_updated: 2020-07-14T12:45:40Z
has_accepted_license: '1'
intvolume: ' 5'
isi: 1
issue: '1'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
publication: Algorithms for Molecular Biology
publication_status: published
publisher: BioMed Central
publist_id: '4517'
pubrep_id: '939'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Accuracy of phylogeny reconstruction methods combining overlapping gene data
sets
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 5
year: '2010'
...
---
_id: '2435'
abstract:
- lang: eng
text: |
We consider a generalization of the van Kampen-Flores Theorem and relate it to the long-standing g-conjecture for simplicial spheres.
author:
- first_name: Eran
full_name: Nevo, Eran
last_name: Nevo
- first_name: Uli
full_name: Uli Wagner
id: 36690CA2-F248-11E8-B48F-1D18A9856A87
last_name: Wagner
orcid: 0000-0002-1494-0568
citation:
ama: Nevo E, Wagner U. On the embeddability of skeleta of spheres. Israel Journal
of Mathematics. 2010;174(1):381-402. doi:10.1007/s11856-009-0119-5
apa: Nevo, E., & Wagner, U. (2010). On the embeddability of skeleta of spheres.
Israel Journal of Mathematics. Springer. https://doi.org/10.1007/s11856-009-0119-5
chicago: Nevo, Eran, and Uli Wagner. “On the Embeddability of Skeleta of Spheres.”
Israel Journal of Mathematics. Springer, 2010. https://doi.org/10.1007/s11856-009-0119-5.
ieee: E. Nevo and U. Wagner, “On the embeddability of skeleta of spheres,” Israel
Journal of Mathematics, vol. 174, no. 1. Springer, pp. 381–402, 2010.
ista: Nevo E, Wagner U. 2010. On the embeddability of skeleta of spheres. Israel
Journal of Mathematics. 174(1), 381–402.
mla: Nevo, Eran, and Uli Wagner. “On the Embeddability of Skeleta of Spheres.” Israel
Journal of Mathematics, vol. 174, no. 1, Springer, 2010, pp. 381–402, doi:10.1007/s11856-009-0119-5.
short: E. Nevo, U. Wagner, Israel Journal of Mathematics 174 (2010) 381–402.
date_created: 2018-12-11T11:57:38Z
date_published: 2010-11-01T00:00:00Z
date_updated: 2021-01-12T06:57:28Z
day: '01'
doi: 10.1007/s11856-009-0119-5
extern: 1
intvolume: ' 174'
issue: '1'
month: '11'
page: 381 - 402
publication: Israel Journal of Mathematics
publication_status: published
publisher: Springer
publist_id: '4472'
quality_controlled: 0
status: public
title: On the embeddability of skeleta of spheres
type: journal_article
volume: 174
year: '2010'
...
---
_id: '2442'
abstract:
- lang: eng
text: In a new study published in this issue of Developmental Cell, Krouk et al.
reveal a surprising mechanism by which plant root systems adapt their architecture
for soil exploitation. The dual transporter NRT1.1 uses both nitrate and the plant
hormone auxin as substrates, enabling soil nitrate availability to regulate auxin-driven
lateral root development.
author:
- first_name: Tom
full_name: Beeckman, Tom
last_name: Beeckman
- first_name: Jirí
full_name: Friml, Jirí
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: 'Beeckman T, Friml J. Nitrate Contra Auxin: Nutrient Sensing by roots. Developmental
Cell. 2010;18(6):877-878. doi:10.1016/j.devcel.2010.05.020'
apa: 'Beeckman, T., & Friml, J. (2010). Nitrate Contra Auxin: Nutrient Sensing
by roots. Developmental Cell. Cell Press. https://doi.org/10.1016/j.devcel.2010.05.020'
chicago: 'Beeckman, Tom, and Jiří Friml. “Nitrate Contra Auxin: Nutrient Sensing
by Roots.” Developmental Cell. Cell Press, 2010. https://doi.org/10.1016/j.devcel.2010.05.020.'
ieee: 'T. Beeckman and J. Friml, “Nitrate Contra Auxin: Nutrient Sensing by roots,”
Developmental Cell, vol. 18, no. 6. Cell Press, pp. 877–878, 2010.'
ista: 'Beeckman T, Friml J. 2010. Nitrate Contra Auxin: Nutrient Sensing by roots.
Developmental Cell. 18(6), 877–878.'
mla: 'Beeckman, Tom, and Jiří Friml. “Nitrate Contra Auxin: Nutrient Sensing by
Roots.” Developmental Cell, vol. 18, no. 6, Cell Press, 2010, pp. 877–78,
doi:10.1016/j.devcel.2010.05.020.'
short: T. Beeckman, J. Friml, Developmental Cell 18 (2010) 877–878.
date_created: 2018-12-11T11:57:41Z
date_published: 2010-06-15T00:00:00Z
date_updated: 2021-01-12T06:57:31Z
day: '15'
doi: 10.1016/j.devcel.2010.05.020
extern: '1'
external_id:
pmid:
- ' 20627068'
intvolume: ' 18'
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pubmed/20627068
month: '06'
oa: 1
oa_version: Published Version
page: 877 - 878
pmid: 1
publication: Developmental Cell
publication_status: published
publisher: Cell Press
publist_id: '4461'
quality_controlled: '1'
status: public
title: 'Nitrate Contra Auxin: Nutrient Sensing by roots'
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 18
year: '2010'
...
---
_id: '2503'
abstract:
- lang: eng
text: Epilepsy is a devastating and poorly understood disease. Mutations in a secreted
neuronal protein, leucine-rich glioma inactivated 1 (LGI1), were reported in patients
with an inherited form of human epilepsy, autosomal dominant partial epilepsy
with auditory features (ADPEAF). Here, we report an essential role of LGI1 as
an antiepileptogenic ligand. We find that loss of LGI1 in mice (LGI1-/-) causes
lethal epilepsy, which is specifically rescued by the neuronal expression of LGI1
transgene, but not LGI3. Moreover, heterozygous mice for the LGI1 mutation (LGI1+/-)
show lowered seizure thresholds. Extracellularly secreted LGI1 links two epilepsy-related
receptors, ADAM22 and ADAM23, in the brain and organizes a transsynaptic protein
complex that includes presynaptic potassium channels and postsynaptic AMPA receptor
scaffolds. A lack of LGI1 disrupts this synaptic protein connection and selectively
reduces AMPA receptor-mediated synaptic transmission in the hippocampus. Thus,
LGI1 may serve as a major determinant of brain excitation, and the LGI1 gene-targeted
mouse provides a good model for human epilepsy.
author:
- first_name: Yuko
full_name: Fukata, Yuko
last_name: Fukata
- first_name: Kathryn
full_name: Lovero, Kathryn L
last_name: Lovero
- first_name: Tsuyoshi
full_name: Iwanaga, Tsuyoshi
last_name: Iwanaga
- first_name: Atsushi
full_name: Watanabe, Atsushi
last_name: Watanabe
- first_name: Norihiko
full_name: Yokoi, Norihiko
last_name: Yokoi
- first_name: Katsuhiko
full_name: Tabuchi, Katsuhiko
last_name: Tabuchi
- first_name: Ryuichi
full_name: Ryuichi Shigemoto
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
- first_name: Roger
full_name: Nicoll, Roger A
last_name: Nicoll
- first_name: Masaki
full_name: Fukata, Masaki
last_name: Fukata
citation:
ama: Fukata Y, Lovero K, Iwanaga T, et al. Disruption of LGI1-linked synaptic complex
causes abnormal synaptic transmission and epilepsy. PNAS. 2010;107(8):3799-3804.
doi:10.1073/pnas.0914537107
apa: Fukata, Y., Lovero, K., Iwanaga, T., Watanabe, A., Yokoi, N., Tabuchi, K.,
… Fukata, M. (2010). Disruption of LGI1-linked synaptic complex causes abnormal
synaptic transmission and epilepsy. PNAS. National Academy of Sciences.
https://doi.org/10.1073/pnas.0914537107
chicago: Fukata, Yuko, Kathryn Lovero, Tsuyoshi Iwanaga, Atsushi Watanabe, Norihiko
Yokoi, Katsuhiko Tabuchi, Ryuichi Shigemoto, Roger Nicoll, and Masaki Fukata.
“Disruption of LGI1-Linked Synaptic Complex Causes Abnormal Synaptic Transmission
and Epilepsy.” PNAS. National Academy of Sciences, 2010. https://doi.org/10.1073/pnas.0914537107.
ieee: Y. Fukata et al., “Disruption of LGI1-linked synaptic complex causes
abnormal synaptic transmission and epilepsy,” PNAS, vol. 107, no. 8. National
Academy of Sciences, pp. 3799–3804, 2010.
ista: Fukata Y, Lovero K, Iwanaga T, Watanabe A, Yokoi N, Tabuchi K, Shigemoto R,
Nicoll R, Fukata M. 2010. Disruption of LGI1-linked synaptic complex causes abnormal
synaptic transmission and epilepsy. PNAS. 107(8), 3799–3804.
mla: Fukata, Yuko, et al. “Disruption of LGI1-Linked Synaptic Complex Causes Abnormal
Synaptic Transmission and Epilepsy.” PNAS, vol. 107, no. 8, National Academy
of Sciences, 2010, pp. 3799–804, doi:10.1073/pnas.0914537107.
short: Y. Fukata, K. Lovero, T. Iwanaga, A. Watanabe, N. Yokoi, K. Tabuchi, R. Shigemoto,
R. Nicoll, M. Fukata, PNAS 107 (2010) 3799–3804.
date_created: 2018-12-11T11:58:03Z
date_published: 2010-02-23T00:00:00Z
date_updated: 2021-01-12T06:57:53Z
day: '23'
doi: 10.1073/pnas.0914537107
extern: 1
intvolume: ' 107'
issue: '8'
month: '02'
page: 3799 - 3804
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '4398'
quality_controlled: 0
status: public
title: Disruption of LGI1-linked synaptic complex causes abnormal synaptic transmission
and epilepsy
type: journal_article
volume: 107
year: '2010'
...
---
_id: '2504'
abstract:
- lang: eng
text: We present a method for immunolabeling of multiple species of membrane proteins
with high spatial resolution. It allows differentiation of equally sized very
small markers with different chemical compositions, which leads to high labeling
efficiency and reduces steric hindrance of closely spaced immunolabeled biomolecules.
Markers such as CdSe/ZnS semiconductor quantum dots and colloidal gold particles
are distinguished by differential contrast in high-angle annular detector dark-field
STEM mode or by EDX microanalysis of their elemental contents. This method was
tested by observation of labeled AMPA- and NMDA-type glutamate receptors on sodium-dodecyl-sulfate-digested
replica prepared from rat hippocampus. To improve particle visibility and detectability,
the replica films were made exclusively with carbon to avoid the high background
of conventional platinum/carbon replica. Extension of the method is suggested
by detection of 1.4 nm nanogold particles and its potential application in the
biological imaging research.
author:
- first_name: Alexandre
full_name: Loukanov, Alexandre R
last_name: Loukanov
- first_name: Naomi
full_name: Kamasawa, Naomi
last_name: Kamasawa
- first_name: Radostin
full_name: Danev, Radostin S
last_name: Danev
- first_name: Ryuichi
full_name: Ryuichi Shigemoto
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
- first_name: Kuniaki
full_name: Nagayama, Kuniaki
last_name: Nagayama
citation:
ama: Loukanov A, Kamasawa N, Danev R, Shigemoto R, Nagayama K. Immunolocalization
of multiple membrane proteins on a carbon replica with STEM and EDX. Ultramicroscopy.
2010;110(4):366-374. doi:10.1016/j.ultramic.2010.01.016
apa: Loukanov, A., Kamasawa, N., Danev, R., Shigemoto, R., & Nagayama, K. (2010).
Immunolocalization of multiple membrane proteins on a carbon replica with STEM
and EDX. Ultramicroscopy. Elsevier. https://doi.org/10.1016/j.ultramic.2010.01.016
chicago: Loukanov, Alexandre, Naomi Kamasawa, Radostin Danev, Ryuichi Shigemoto,
and Kuniaki Nagayama. “Immunolocalization of Multiple Membrane Proteins on a Carbon
Replica with STEM and EDX.” Ultramicroscopy. Elsevier, 2010. https://doi.org/10.1016/j.ultramic.2010.01.016.
ieee: A. Loukanov, N. Kamasawa, R. Danev, R. Shigemoto, and K. Nagayama, “Immunolocalization
of multiple membrane proteins on a carbon replica with STEM and EDX,” Ultramicroscopy,
vol. 110, no. 4. Elsevier, pp. 366–374, 2010.
ista: Loukanov A, Kamasawa N, Danev R, Shigemoto R, Nagayama K. 2010. Immunolocalization
of multiple membrane proteins on a carbon replica with STEM and EDX. Ultramicroscopy.
110(4), 366–374.
mla: Loukanov, Alexandre, et al. “Immunolocalization of Multiple Membrane Proteins
on a Carbon Replica with STEM and EDX.” Ultramicroscopy, vol. 110, no.
4, Elsevier, 2010, pp. 366–74, doi:10.1016/j.ultramic.2010.01.016.
short: A. Loukanov, N. Kamasawa, R. Danev, R. Shigemoto, K. Nagayama, Ultramicroscopy
110 (2010) 366–374.
date_created: 2018-12-11T11:58:03Z
date_published: 2010-03-01T00:00:00Z
date_updated: 2021-01-12T06:57:53Z
day: '01'
doi: 10.1016/j.ultramic.2010.01.016
extern: 1
intvolume: ' 110'
issue: '4'
month: '03'
page: 366 - 374
publication: Ultramicroscopy
publication_status: published
publisher: Elsevier
publist_id: '4397'
quality_controlled: 0
status: public
title: Immunolocalization of multiple membrane proteins on a carbon replica with STEM
and EDX
type: journal_article
volume: 110
year: '2010'
...
---
_id: '2505'
abstract:
- lang: eng
text: Cbln1, secreted from cerebellar granule cells, and the orphan glutamate receptor
52 (GluD2), expressed by Purkinje cells, are essential for synapse integrity between
these neurons in adult mice. Nevertheless, no endogenous binding partners for
these molecules have been identified. We found that Cblnl binds directly to the
N-terminal domain of GluD2. GluD2 expression by postsynaptic cells, combined with
exogenously applied Cbln1, was necessary and sufficient to induce new synapses
in vitro and in the adult cerebellum in vivo. Further, beads coated with recombinant
Cbln1 directly induced presynaptic differentiation and indirectly caused clustering
of postsynaptic molecules via GluD2. These results indicate that the Cbln1-GluD2
complex is a unique synapse organizer that acts bidirectionally on both pre- and
postsynaptic components.
author:
- first_name: Keiko
full_name: Matsuda, Keiko
last_name: Matsuda
- first_name: Eriko
full_name: Miura, Eriko
last_name: Miura
- first_name: Taisuke
full_name: Miyazaki, Taisuke
last_name: Miyazaki
- first_name: Wataru
full_name: Kakegawa, Wataru
last_name: Kakegawa
- first_name: Kyoichi
full_name: Emi, Kyoichi
last_name: Emi
- first_name: Sakae
full_name: Narumi, Sakae
last_name: Narumi
- first_name: Yugo
full_name: Fukazawa, Yugo
last_name: Fukazawa
- first_name: Aya
full_name: Ito-lshida, Aya
last_name: Ito Lshida
- first_name: Tetsuro
full_name: Kondo, Tetsuro
last_name: Kondo
- first_name: Ryuichi
full_name: Ryuichi Shigemoto
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
- first_name: Masahiko
full_name: Watanabe, Masahiko
last_name: Watanabe
- first_name: Michisuke
full_name: Yuzaki, Michisuke
last_name: Yuzaki
citation:
ama: Matsuda K, Miura E, Miyazaki T, et al. Cbln1 is a ligand for an orphan glutamate
receptor δ2, a bidirectional synapse organizer. Science. 2010;328(5976):363-368.
doi:10.1126/science.1185152
apa: Matsuda, K., Miura, E., Miyazaki, T., Kakegawa, W., Emi, K., Narumi, S., …
Yuzaki, M. (2010). Cbln1 is a ligand for an orphan glutamate receptor δ2, a bidirectional
synapse organizer. Science. American Association for the Advancement of
Science. https://doi.org/10.1126/science.1185152
chicago: Matsuda, Keiko, Eriko Miura, Taisuke Miyazaki, Wataru Kakegawa, Kyoichi
Emi, Sakae Narumi, Yugo Fukazawa, et al. “Cbln1 Is a Ligand for an Orphan Glutamate
Receptor Δ2, a Bidirectional Synapse Organizer.” Science. American Association
for the Advancement of Science, 2010. https://doi.org/10.1126/science.1185152.
ieee: K. Matsuda et al., “Cbln1 is a ligand for an orphan glutamate receptor
δ2, a bidirectional synapse organizer,” Science, vol. 328, no. 5976. American
Association for the Advancement of Science, pp. 363–368, 2010.
ista: Matsuda K, Miura E, Miyazaki T, Kakegawa W, Emi K, Narumi S, Fukazawa Y, Ito
Lshida A, Kondo T, Shigemoto R, Watanabe M, Yuzaki M. 2010. Cbln1 is a ligand
for an orphan glutamate receptor δ2, a bidirectional synapse organizer. Science.
328(5976), 363–368.
mla: Matsuda, Keiko, et al. “Cbln1 Is a Ligand for an Orphan Glutamate Receptor
Δ2, a Bidirectional Synapse Organizer.” Science, vol. 328, no. 5976, American
Association for the Advancement of Science, 2010, pp. 363–68, doi:10.1126/science.1185152.
short: K. Matsuda, E. Miura, T. Miyazaki, W. Kakegawa, K. Emi, S. Narumi, Y. Fukazawa,
A. Ito Lshida, T. Kondo, R. Shigemoto, M. Watanabe, M. Yuzaki, Science 328 (2010)
363–368.
date_created: 2018-12-11T11:58:04Z
date_published: 2010-04-16T00:00:00Z
date_updated: 2021-01-12T06:57:53Z
day: '16'
doi: 10.1126/science.1185152
extern: 1
intvolume: ' 328'
issue: '5976'
month: '04'
page: 363 - 368
publication: Science
publication_status: published
publisher: American Association for the Advancement of Science
publist_id: '4396'
quality_controlled: 0
status: public
title: Cbln1 is a ligand for an orphan glutamate receptor δ2, a bidirectional synapse
organizer
type: journal_article
volume: 328
year: '2010'
...