---
_id: '891'
abstract:
- lang: eng
text: Gene duplications and their subsequent divergence play an important part in
the evolution of novel gene functions. Several models for the emergence, maintenance
and evolution of gene copies have been proposed. However, a clear consensus on
how gene duplications are fixed and maintained in genomes is lacking. Here, we
present a comprehensive classification of the models that are relevant to all
stages of the evolution of gene duplications. Each model predicts a unique combination
of evolutionary dynamics and functional properties. Setting out these predictions
is an important step towards identifying the main mechanisms that are involved
in the evolution of gene duplications.
acknowledgement: |
We thank M. Lynch for insightful comments on the manuscript.
author:
- first_name: Hideki
full_name: Innan, Hideki
last_name: Innan
- first_name: Fyodor
full_name: Fyodor Kondrashov
id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
last_name: Kondrashov
orcid: 0000-0001-8243-4694
citation:
ama: 'Innan H, Kondrashov F. The evolution of gene duplications: Classifying and
distinguishing between models. Nature Reviews Genetics. 2010;11(2):97-108.
doi:10.1038/nrg2689'
apa: 'Innan, H., & Kondrashov, F. (2010). The evolution of gene duplications:
Classifying and distinguishing between models. Nature Reviews Genetics.
Nature Publishing Group. https://doi.org/10.1038/nrg2689'
chicago: 'Innan, Hideki, and Fyodor Kondrashov. “The Evolution of Gene Duplications:
Classifying and Distinguishing between Models.” Nature Reviews Genetics.
Nature Publishing Group, 2010. https://doi.org/10.1038/nrg2689.'
ieee: 'H. Innan and F. Kondrashov, “The evolution of gene duplications: Classifying
and distinguishing between models,” Nature Reviews Genetics, vol. 11, no.
2. Nature Publishing Group, pp. 97–108, 2010.'
ista: 'Innan H, Kondrashov F. 2010. The evolution of gene duplications: Classifying
and distinguishing between models. Nature Reviews Genetics. 11(2), 97–108.'
mla: 'Innan, Hideki, and Fyodor Kondrashov. “The Evolution of Gene Duplications:
Classifying and Distinguishing between Models.” Nature Reviews Genetics,
vol. 11, no. 2, Nature Publishing Group, 2010, pp. 97–108, doi:10.1038/nrg2689.'
short: H. Innan, F. Kondrashov, Nature Reviews Genetics 11 (2010) 97–108.
date_created: 2018-12-11T11:49:03Z
date_published: 2010-02-01T00:00:00Z
date_updated: 2021-01-12T08:21:19Z
day: '01'
doi: 10.1038/nrg2689
extern: 1
intvolume: ' 11'
issue: '2'
month: '02'
page: 97 - 108
publication: Nature Reviews Genetics
publication_status: published
publisher: Nature Publishing Group
publist_id: '6755'
quality_controlled: 0
status: public
title: 'The evolution of gene duplications: Classifying and distinguishing between
models'
type: journal_article
volume: 11
year: '2010'
...
---
_id: '901'
abstract:
- lang: eng
text: 'Background: Surveying deleterious variation in human populations is crucial
for our understanding, diagnosis and potential treatment of human genetic pathologies.
A number of recent genome-wide analyses focused on the prevalence of segregating
deleterious alleles in the nuclear genome. However, such studies have not been
conducted for the mitochondrial genome.Results: We present a systematic survey
of polymorphisms in the human mitochondrial genome, including those predicted
to be deleterious and those that correspond to known pathogenic mutations. Analyzing
4458 completely sequenced mitochondrial genomes we characterize the genetic diversity
of different types of single nucleotide polymorphisms (SNPs) in African (L haplotypes)
and non-African (M and N haplotypes) populations. We find that the overall level
of polymorphism is higher in the mitochondrial compared to the nuclear genome,
although the mitochondrial genome appears to be under stronger selection as indicated
by proportionally fewer nonsynonymous than synonymous substitutions. The African
mitochondrial genomes show higher heterozygosity, a greater number of polymorphic
sites and higher frequencies of polymorphisms for synonymous, benign and damaging
polymorphism than non-African genomes. However, African genomes carry significantly
fewer SNPs that have been previously characterized as pathogenic compared to non-African
genomes.Conclusions: Finding SNPs classified as pathogenic to be the only category
of polymorphisms that are more abundant in non-African genomes is best explained
by a systematic ascertainment bias that favours the discovery of pathogenic polymorphisms
segregating in non-African populations. This further suggests that, contrary to
the common disease-common variant hypothesis, pathogenic mutations are largely
population-specific and different SNPs may be associated with the same disease
in different populations. Therefore, to obtain a comprehensive picture of the
deleterious variability in the human population, as well as to improve the diagnostics
of individuals carrying African mitochondrial haplotypes, it is necessary to survey
different populations independently.Reviewers: This article was reviewed by Dr
Mikhail Gelfand, Dr Vasily Ramensky (nominated by Dr Eugene Koonin) and Dr David
Rand (nominated by Dr Laurence Hurst).'
acknowledgement: We thank Ivan Adzhubei and Shamil Sunyaev for extensive assistance
with PolyPhen 2 and insightful discussion. We thank the Spanish Ministry of Science
and Innovation, Plan Nacional Program grant BFU2009-09271 for funding.
author:
- first_name: Michael
full_name: Breen, Michael S
last_name: Breen
- first_name: Fyodor
full_name: Fyodor Kondrashov
id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
last_name: Kondrashov
orcid: 0000-0001-8243-4694
citation:
ama: Breen M, Kondrashov F. Mitochondrial pathogenic mutations are population-specific.
Biology Direct. 2010;5. doi:10.1186/1745-6150-5-68
apa: Breen, M., & Kondrashov, F. (2010). Mitochondrial pathogenic mutations
are population-specific. Biology Direct. BioMed Central. https://doi.org/10.1186/1745-6150-5-68
chicago: Breen, Michael, and Fyodor Kondrashov. “Mitochondrial Pathogenic Mutations
Are Population-Specific.” Biology Direct. BioMed Central, 2010. https://doi.org/10.1186/1745-6150-5-68.
ieee: M. Breen and F. Kondrashov, “Mitochondrial pathogenic mutations are population-specific,”
Biology Direct, vol. 5. BioMed Central, 2010.
ista: Breen M, Kondrashov F. 2010. Mitochondrial pathogenic mutations are population-specific.
Biology Direct. 5.
mla: Breen, Michael, and Fyodor Kondrashov. “Mitochondrial Pathogenic Mutations
Are Population-Specific.” Biology Direct, vol. 5, BioMed Central, 2010,
doi:10.1186/1745-6150-5-68.
short: M. Breen, F. Kondrashov, Biology Direct 5 (2010).
date_created: 2018-12-11T11:49:06Z
date_published: 2010-12-31T00:00:00Z
date_updated: 2021-01-12T08:21:46Z
day: '31'
doi: 10.1186/1745-6150-5-68
extern: 1
intvolume: ' 5'
month: '12'
publication: Biology Direct
publication_status: published
publisher: BioMed Central
publist_id: '6749'
quality_controlled: 0
status: public
title: Mitochondrial pathogenic mutations are population-specific
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
volume: 5
year: '2010'
...
---
_id: '9012'
abstract:
- lang: eng
text: In this Letter, we characterize experimentally the diffusiophoretic motion
of colloids and λ-DNA toward higher concentration of solutes, using microfluidic
technology to build spatially and temporally controlled concentration gradients.
We then demonstrate that segregation and spatial patterning of the particles can
be achieved from temporal variations of the solute concentration profile. This
segregation takes the form of a strong trapping potential, stemming from an osmotically
induced rectification mechanism of the solute time-dependent variations. Depending
on the spatial and temporal symmetry of the solute signal, localization patterns
with various shapes can be achieved. These results highlight the role of solute
contrasts in out-of-equilibrium processes occurring in soft matter.
article_number: '138302'
article_processing_charge: No
article_type: letter_note
arxiv: 1
author:
- first_name: Jérémie A
full_name: Palacci, Jérémie A
id: 8fb92548-2b22-11eb-b7c1-a3f0d08d7c7d
last_name: Palacci
orcid: 0000-0002-7253-9465
- first_name: Benjamin
full_name: Abécassis, Benjamin
last_name: Abécassis
- first_name: Cécile
full_name: Cottin-Bizonne, Cécile
last_name: Cottin-Bizonne
- first_name: Christophe
full_name: Ybert, Christophe
last_name: Ybert
- first_name: Lydéric
full_name: Bocquet, Lydéric
last_name: Bocquet
citation:
ama: Palacci JA, Abécassis B, Cottin-Bizonne C, Ybert C, Bocquet L. Colloidal motility
and pattern formation under rectified diffusiophoresis. Physical Review Letters.
2010;104(13). doi:10.1103/physrevlett.104.138302
apa: Palacci, J. A., Abécassis, B., Cottin-Bizonne, C., Ybert, C., & Bocquet,
L. (2010). Colloidal motility and pattern formation under rectified diffusiophoresis.
Physical Review Letters. American Physical Society. https://doi.org/10.1103/physrevlett.104.138302
chicago: Palacci, Jérémie A, Benjamin Abécassis, Cécile Cottin-Bizonne, Christophe
Ybert, and Lydéric Bocquet. “Colloidal Motility and Pattern Formation under Rectified
Diffusiophoresis.” Physical Review Letters. American Physical Society,
2010. https://doi.org/10.1103/physrevlett.104.138302.
ieee: J. A. Palacci, B. Abécassis, C. Cottin-Bizonne, C. Ybert, and L. Bocquet,
“Colloidal motility and pattern formation under rectified diffusiophoresis,” Physical
Review Letters, vol. 104, no. 13. American Physical Society, 2010.
ista: Palacci JA, Abécassis B, Cottin-Bizonne C, Ybert C, Bocquet L. 2010. Colloidal
motility and pattern formation under rectified diffusiophoresis. Physical Review
Letters. 104(13), 138302.
mla: Palacci, Jérémie A., et al. “Colloidal Motility and Pattern Formation under
Rectified Diffusiophoresis.” Physical Review Letters, vol. 104, no. 13,
138302, American Physical Society, 2010, doi:10.1103/physrevlett.104.138302.
short: J.A. Palacci, B. Abécassis, C. Cottin-Bizonne, C. Ybert, L. Bocquet, Physical
Review Letters 104 (2010).
date_created: 2021-01-19T10:25:04Z
date_published: 2010-04-02T00:00:00Z
date_updated: 2023-02-23T13:46:40Z
day: '02'
doi: 10.1103/physrevlett.104.138302
extern: '1'
external_id:
arxiv:
- '1004.1256 '
pmid:
- '20481918'
intvolume: ' 104'
issue: '13'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1004.1256
month: '04'
oa: 1
oa_version: Preprint
pmid: 1
publication: Physical Review Letters
publication_identifier:
eissn:
- '10797114'
issn:
- '00319007'
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Colloidal motility and pattern formation under rectified diffusiophoresis
type: journal_article
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 104
year: '2010'
...
---
_id: '9013'
abstract:
- lang: eng
text: In this Letter, we investigate experimentally the nonequilibrium steady state
of an active colloidal suspension under gravity field. The active particles are
made of chemically powered colloids, showing self propulsion in the presence of
an added fuel, here hydrogen peroxide. The active suspension is studied in a dedicated
microfluidic device, made of permeable gel microstructures. Both the microdynamics
of individual colloids and the global stationary state of the suspension under
gravity are measured with optical microscopy. This yields a direct measurement
of the effective temperature of the active system as a function of the particle
activity, on the basis of the fluctuation-dissipation relationship. Our work is
a first step in the experimental exploration of the out-of-equilibrium properties
of active colloidal systems.
article_number: '088304'
article_processing_charge: No
article_type: letter_note
arxiv: 1
author:
- first_name: Jérémie A
full_name: Palacci, Jérémie A
id: 8fb92548-2b22-11eb-b7c1-a3f0d08d7c7d
last_name: Palacci
orcid: 0000-0002-7253-9465
- first_name: Cécile
full_name: Cottin-Bizonne, Cécile
last_name: Cottin-Bizonne
- first_name: Christophe
full_name: Ybert, Christophe
last_name: Ybert
- first_name: Lydéric
full_name: Bocquet, Lydéric
last_name: Bocquet
citation:
ama: Palacci JA, Cottin-Bizonne C, Ybert C, Bocquet L. Sedimentation and effective
temperature of active colloidal suspensions. Physical Review Letters. 2010;105(8).
doi:10.1103/physrevlett.105.088304
apa: Palacci, J. A., Cottin-Bizonne, C., Ybert, C., & Bocquet, L. (2010). Sedimentation
and effective temperature of active colloidal suspensions. Physical Review
Letters. American Physical Society . https://doi.org/10.1103/physrevlett.105.088304
chicago: Palacci, Jérémie A, Cécile Cottin-Bizonne, Christophe Ybert, and Lydéric
Bocquet. “Sedimentation and Effective Temperature of Active Colloidal Suspensions.”
Physical Review Letters. American Physical Society , 2010. https://doi.org/10.1103/physrevlett.105.088304.
ieee: J. A. Palacci, C. Cottin-Bizonne, C. Ybert, and L. Bocquet, “Sedimentation
and effective temperature of active colloidal suspensions,” Physical Review
Letters, vol. 105, no. 8. American Physical Society , 2010.
ista: Palacci JA, Cottin-Bizonne C, Ybert C, Bocquet L. 2010. Sedimentation and
effective temperature of active colloidal suspensions. Physical Review Letters.
105(8), 088304.
mla: Palacci, Jérémie A., et al. “Sedimentation and Effective Temperature of Active
Colloidal Suspensions.” Physical Review Letters, vol. 105, no. 8, 088304,
American Physical Society , 2010, doi:10.1103/physrevlett.105.088304.
short: J.A. Palacci, C. Cottin-Bizonne, C. Ybert, L. Bocquet, Physical Review Letters
105 (2010).
date_created: 2021-01-19T10:26:33Z
date_published: 2010-08-20T00:00:00Z
date_updated: 2023-02-23T13:46:42Z
day: '20'
doi: 10.1103/physrevlett.105.088304
extern: '1'
external_id:
arxiv:
- '1004.4340'
pmid:
- '20868136'
intvolume: ' 105'
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1004.4340
month: '08'
oa: 1
oa_version: Preprint
pmid: 1
publication: Physical Review Letters
publication_identifier:
eissn:
- '10797114'
issn:
- '00319007'
publication_status: published
publisher: 'American Physical Society '
quality_controlled: '1'
scopus_import: '1'
status: public
title: Sedimentation and effective temperature of active colloidal suspensions
type: journal_article
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 105
year: '2010'
...
---
_id: '9145'
abstract:
- lang: eng
text: "We have found a new way to express the solutions of the RSM (Reynolds Stress
Model) equations that allows us to present the turbulent diffusivities for heat,
salt and momentum in a way that is considerably simpler and thus easier to implement
than in previous work. The RSM provides the dimensionless mixing efficiencies
Γα (α stands for heat, salt and momentum). However, to compute the diffusivities,
one needs additional information, specifically, the dissipation ε. Since a dynamic
equation for the latter that includes the physical processes relevant to the ocean
is still not available, one must resort to different sources of information outside
the RSM to obtain a complete Mixing Scheme usable in OGCMs.\r\nAs for the RSM
results, we show that the Γα’s are functions of both Ri and Rρ (Richardson number
and density ratio representing double diffusion, DD); the Γα are different for
heat, salt and momentum; in the case of heat, the traditional value Γh = 0.2 is
valid only in the presence of strong shear (when DD is inoperative) while when
shear subsides, NATRE data show that Γh can be three times as large, a result
that we reproduce. The salt Γs is given in terms of Γh. The momentum Γm has thus
far been guessed with different prescriptions while the RSM provides a well defined
expression for Γm(Ri, Rρ). Having tested Γh, we then test the momentum Γm by showing
that the turbulent Prandtl number Γm/Γh vs. Ri reproduces the available data quite
well.\r\n\r\nAs for the dissipation ε, we use different representations, one for
the mixed layer (ML), one for the thermocline and one for the ocean’s bottom.
For the ML, we adopt a procedure analogous to the one successfully used in PB
(planetary boundary layer) studies; for the thermocline, we employ an expression
for the variable εN−2 from studies of the internal gravity waves spectra which
includes a latitude dependence; for the ocean bottom, we adopt the enhanced bottom
diffusivity expression used by previous authors but with a state of the art internal
tidal energy formulation and replace the fixed Γα = 0.2 with the RSM result that
brings into the problem the Ri, Rρ dependence of the Γα; the unresolved bottom
drag, which has thus far been either ignored or modeled with heuristic relations,
is modeled using a formalism we previously developed and tested in PBL studies.\r\nWe
carried out several tests without an OGCM. Prandtl and flux Richardson numbers
vs. Ri. The RSM model reproduces both types of data satisfactorily. DD and Mixing
efficiency Γh(Ri, Rρ). The RSM model reproduces well the NATRE data. Bimodal ε-distribution.
NATRE data show that ε(Ri < 1) ≈ 10ε(Ri > 1), which our model reproduces. Heat
to salt flux ratio. In the Ri ≫ 1 regime, the RSM predictions reproduce the data
satisfactorily. NATRE mass diffusivity. The z-profile of the mass diffusivity
reproduces well the measurements at NATRE. The local form of the mixing scheme
is algebraic with one cubic equation to solve."
article_processing_charge: No
article_type: original
author:
- first_name: V.M.
full_name: Canuto, V.M.
last_name: Canuto
- first_name: A.M.
full_name: Howard, A.M.
last_name: Howard
- first_name: Y.
full_name: Cheng, Y.
last_name: Cheng
- first_name: Caroline J
full_name: Muller, Caroline J
id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
last_name: Muller
orcid: 0000-0001-5836-5350
- first_name: A.
full_name: Leboissetier, A.
last_name: Leboissetier
- first_name: S.R.
full_name: Jayne, S.R.
last_name: Jayne
citation:
ama: 'Canuto VM, Howard AM, Cheng Y, Muller CJ, Leboissetier A, Jayne SR. Ocean
turbulence, III: New GISS vertical mixing scheme. Ocean Modelling. 2010;34(3-4):70-91.
doi:10.1016/j.ocemod.2010.04.006'
apa: 'Canuto, V. M., Howard, A. M., Cheng, Y., Muller, C. J., Leboissetier, A.,
& Jayne, S. R. (2010). Ocean turbulence, III: New GISS vertical mixing scheme.
Ocean Modelling. Elsevier. https://doi.org/10.1016/j.ocemod.2010.04.006'
chicago: 'Canuto, V.M., A.M. Howard, Y. Cheng, Caroline J Muller, A. Leboissetier,
and S.R. Jayne. “Ocean Turbulence, III: New GISS Vertical Mixing Scheme.” Ocean
Modelling. Elsevier, 2010. https://doi.org/10.1016/j.ocemod.2010.04.006.'
ieee: 'V. M. Canuto, A. M. Howard, Y. Cheng, C. J. Muller, A. Leboissetier, and
S. R. Jayne, “Ocean turbulence, III: New GISS vertical mixing scheme,” Ocean
Modelling, vol. 34, no. 3–4. Elsevier, pp. 70–91, 2010.'
ista: 'Canuto VM, Howard AM, Cheng Y, Muller CJ, Leboissetier A, Jayne SR. 2010.
Ocean turbulence, III: New GISS vertical mixing scheme. Ocean Modelling. 34(3–4),
70–91.'
mla: 'Canuto, V. M., et al. “Ocean Turbulence, III: New GISS Vertical Mixing Scheme.”
Ocean Modelling, vol. 34, no. 3–4, Elsevier, 2010, pp. 70–91, doi:10.1016/j.ocemod.2010.04.006.'
short: V.M. Canuto, A.M. Howard, Y. Cheng, C.J. Muller, A. Leboissetier, S.R. Jayne,
Ocean Modelling 34 (2010) 70–91.
date_created: 2021-02-15T14:40:19Z
date_published: 2010-05-12T00:00:00Z
date_updated: 2022-01-24T13:51:35Z
day: '12'
doi: 10.1016/j.ocemod.2010.04.006
extern: '1'
intvolume: ' 34'
issue: 3-4
keyword:
- Computer Science (miscellaneous)
- Geotechnical Engineering and Engineering Geology
- Atmospheric Science
- Oceanography
language:
- iso: eng
month: '05'
oa_version: None
page: 70-91
publication: Ocean Modelling
publication_identifier:
issn:
- 1463-5003
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: 'Ocean turbulence, III: New GISS vertical mixing scheme'
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 34
year: '2010'
...
---
_id: '9146'
abstract:
- lang: eng
text: "The factors governing the rate of change in the amount of atmospheric water
vapor are analyzed in simulations of climate change. The global-mean amount of
water vapor is estimated to increase at a differential rate of 7.3% K − 1 with
respect to global-mean surface air temperature in the multi-model mean. Larger
rates of change result if the fractional change is evaluated over a finite change
in temperature (e.g., 8.2% K − 1 for a 3 K warming), and rates of change of zonal-mean
column water vapor range from 6 to 12% K − 1 depending on latitude.\r\nClausius–Clapeyron
scaling is directly evaluated using an invariant distribution of monthly-mean
relative humidity, giving a rate of 7.4% K − 1 for global-mean water vapor. There
are deviations from Clausius–Clapeyron scaling of zonal-mean column water vapor
in the tropics and mid-latitudes, but they largely cancel in the global mean.
A purely thermodynamic scaling based on a saturated troposphere gives a higher
global rate of 7.9% K − 1.\r\nSurface specific humidity increases at a rate of
5.7% K − 1, considerably lower than the rate for global-mean water vapor. Surface
specific humidity closely follows Clausius–Clapeyron scaling over ocean. But there
are widespread decreases in surface relative humidity over land (by more than
1% K − 1 in many regions), and it is argued that decreases of this magnitude could
result from the land/ocean contrast in surface warming."
article_number: '025207'
article_processing_charge: No
article_type: original
author:
- first_name: P A
full_name: O’Gorman, P A
last_name: O’Gorman
- first_name: Caroline J
full_name: Muller, Caroline J
id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
last_name: Muller
orcid: 0000-0001-5836-5350
citation:
ama: O’Gorman PA, Muller CJ. How closely do changes in surface and column water
vapor follow Clausius–Clapeyron scaling in climate change simulations? Environmental
Research Letters. 2010;5(2). doi:10.1088/1748-9326/5/2/025207
apa: O’Gorman, P. A., & Muller, C. J. (2010). How closely do changes in surface
and column water vapor follow Clausius–Clapeyron scaling in climate change simulations?
Environmental Research Letters. IOP Publishing. https://doi.org/10.1088/1748-9326/5/2/025207
chicago: O’Gorman, P A, and Caroline J Muller. “How Closely Do Changes in Surface
and Column Water Vapor Follow Clausius–Clapeyron Scaling in Climate Change Simulations?”
Environmental Research Letters. IOP Publishing, 2010. https://doi.org/10.1088/1748-9326/5/2/025207.
ieee: P. A. O’Gorman and C. J. Muller, “How closely do changes in surface and column
water vapor follow Clausius–Clapeyron scaling in climate change simulations?,”
Environmental Research Letters, vol. 5, no. 2. IOP Publishing, 2010.
ista: O’Gorman PA, Muller CJ. 2010. How closely do changes in surface and column
water vapor follow Clausius–Clapeyron scaling in climate change simulations? Environmental
Research Letters. 5(2), 025207.
mla: O’Gorman, P. A., and Caroline J. Muller. “How Closely Do Changes in Surface
and Column Water Vapor Follow Clausius–Clapeyron Scaling in Climate Change Simulations?”
Environmental Research Letters, vol. 5, no. 2, 025207, IOP Publishing,
2010, doi:10.1088/1748-9326/5/2/025207.
short: P.A. O’Gorman, C.J. Muller, Environmental Research Letters 5 (2010).
date_created: 2021-02-15T14:40:46Z
date_published: 2010-04-09T00:00:00Z
date_updated: 2022-01-24T13:51:02Z
day: '09'
doi: 10.1088/1748-9326/5/2/025207
extern: '1'
intvolume: ' 5'
issue: '2'
keyword:
- Renewable Energy
- Sustainability and the Environment
- Public Health
- Environmental and Occupational Health
- General Environmental Science
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1088/1748-9326/5/2/025207
month: '04'
oa: 1
oa_version: Published Version
publication: Environmental Research Letters
publication_identifier:
issn:
- 1748-9326
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
status: public
title: How closely do changes in surface and column water vapor follow Clausius–Clapeyron
scaling in climate change simulations?
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 5
year: '2010'
...
---
_id: '920'
abstract:
- lang: eng
text: Most eukaryotic cells sense and respond to the mechanical properties of their
surroundings. This can strongly influence their collective behavior in embryonic
development, tissue function, and wound healing. We use a deformable substrate
to measure collective behavior in cell motion due to substrate mediated cell-cell
interactions. We quantify spatial and temporal correlations in migration velocity
and substrate deformation, and show that cooperative cell-driven patterns of substrate
deformation mediate long-distance mechanical coupling between cells and control
collective cell migration.
acknowledgement: "This work was supported by the NSF (DMR-0602684) and the Harvard
MRSEC (DMR-0820484).\r\nWe would like to thank Dr. James Butler for helpful conversations."
article_processing_charge: No
author:
- first_name: Thomas
full_name: Angelini, Thomas
last_name: Angelini
- first_name: Edouard B
full_name: Hannezo, Edouard B
id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
last_name: Hannezo
orcid: 0000-0001-6005-1561
- first_name: Xavier
full_name: Trepat, Xavier
last_name: Trepat
- first_name: Jeffrey
full_name: Fredberg, Jeffrey
last_name: Fredberg
- first_name: David
full_name: Weitz, David
last_name: Weitz
citation:
ama: Angelini T, Hannezo EB, Trepat X, Fredberg J, Weitz D. Cell migration driven
by cooperative substrate deformation patterns. Physical Review Letters.
2010;104(16). doi:10.1103/PhysRevLett.104.168104
apa: Angelini, T., Hannezo, E. B., Trepat, X., Fredberg, J., & Weitz, D. (2010).
Cell migration driven by cooperative substrate deformation patterns. Physical
Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.104.168104
chicago: Angelini, Thomas, Edouard B Hannezo, Xavier Trepat, Jeffrey Fredberg, and
David Weitz. “Cell Migration Driven by Cooperative Substrate Deformation Patterns.”
Physical Review Letters. American Physical Society, 2010. https://doi.org/10.1103/PhysRevLett.104.168104.
ieee: T. Angelini, E. B. Hannezo, X. Trepat, J. Fredberg, and D. Weitz, “Cell migration
driven by cooperative substrate deformation patterns,” Physical Review Letters,
vol. 104, no. 16. American Physical Society, 2010.
ista: Angelini T, Hannezo EB, Trepat X, Fredberg J, Weitz D. 2010. Cell migration
driven by cooperative substrate deformation patterns. Physical Review Letters.
104(16).
mla: Angelini, Thomas, et al. “Cell Migration Driven by Cooperative Substrate Deformation
Patterns.” Physical Review Letters, vol. 104, no. 16, American Physical
Society, 2010, doi:10.1103/PhysRevLett.104.168104.
short: T. Angelini, E.B. Hannezo, X. Trepat, J. Fredberg, D. Weitz, Physical Review
Letters 104 (2010).
date_created: 2018-12-11T11:49:12Z
date_published: 2010-04-23T00:00:00Z
date_updated: 2021-01-12T08:21:55Z
day: '23'
doi: 10.1103/PhysRevLett.104.168104
extern: '1'
intvolume: ' 104'
issue: '16'
language:
- iso: eng
month: '04'
oa_version: None
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '6523'
status: public
title: Cell migration driven by cooperative substrate deformation patterns
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 104
year: '2010'
...
---
_id: '9452'
abstract:
- lang: eng
text: Eukaryotic cytosine methylation represses transcription but also occurs in
the bodies of active genes, and the extent of methylation biology conservation
is unclear. We quantified DNA methylation in 17 eukaryotic genomes and found that
gene body methylation is conserved between plants and animals, whereas selective
methylation of transposons is not. We show that methylation of plant transposons
in the CHG context extends to green algae and that exclusion of histone H2A.Z
from methylated DNA is conserved between plants and animals, and we present evidence
for RNA-directed DNA methylation of fungal genes. Our data demonstrate that extant
DNA methylation systems are mosaics of conserved and derived features, and indicate
that gene body methylation is an ancient property of eukaryotic genomes.
article_processing_charge: No
article_type: original
author:
- first_name: 'Assaf '
full_name: 'Zemach, Assaf '
last_name: Zemach
- first_name: Ivy E.
full_name: McDaniel, Ivy E.
last_name: McDaniel
- first_name: Pedro
full_name: Silva, Pedro
last_name: Silva
- first_name: Daniel
full_name: Zilberman, Daniel
id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
last_name: Zilberman
orcid: 0000-0002-0123-8649
citation:
ama: Zemach A, McDaniel IE, Silva P, Zilberman D. Genome-wide evolutionary analysis
of eukaryotic DNA methylation. Science. 2010;328(5980):916-919. doi:10.1126/science.1186366
apa: Zemach, A., McDaniel, I. E., Silva, P., & Zilberman, D. (2010). Genome-wide
evolutionary analysis of eukaryotic DNA methylation. Science. American
Association for the Advancement of Science. https://doi.org/10.1126/science.1186366
chicago: Zemach, Assaf , Ivy E. McDaniel, Pedro Silva, and Daniel Zilberman. “Genome-Wide
Evolutionary Analysis of Eukaryotic DNA Methylation.” Science. American
Association for the Advancement of Science, 2010. https://doi.org/10.1126/science.1186366.
ieee: A. Zemach, I. E. McDaniel, P. Silva, and D. Zilberman, “Genome-wide evolutionary
analysis of eukaryotic DNA methylation,” Science, vol. 328, no. 5980. American
Association for the Advancement of Science, pp. 916–919, 2010.
ista: Zemach A, McDaniel IE, Silva P, Zilberman D. 2010. Genome-wide evolutionary
analysis of eukaryotic DNA methylation. Science. 328(5980), 916–919.
mla: Zemach, Assaf, et al. “Genome-Wide Evolutionary Analysis of Eukaryotic DNA
Methylation.” Science, vol. 328, no. 5980, American Association for the
Advancement of Science, 2010, pp. 916–19, doi:10.1126/science.1186366.
short: A. Zemach, I.E. McDaniel, P. Silva, D. Zilberman, Science 328 (2010) 916–919.
date_created: 2021-06-04T08:26:08Z
date_published: 2010-05-14T00:00:00Z
date_updated: 2021-12-14T08:35:37Z
day: '14'
department:
- _id: DaZi
doi: 10.1126/science.1186366
extern: '1'
external_id:
pmid:
- '20395474 '
intvolume: ' 328'
issue: '5980'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '05'
oa_version: None
page: 916-919
pmid: 1
publication: Science
publication_identifier:
eissn:
- 1095-9203
issn:
- 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Genome-wide evolutionary analysis of eukaryotic DNA methylation
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 328
year: '2010'
...
---
_id: '9485'
abstract:
- lang: eng
text: 'Cytosine methylation silences transposable elements in plants, vertebrates,
and fungi but also regulates gene expression. Plant methylation is catalyzed by
three families of enzymes, each with a preferred sequence context: CG, CHG (H
= A, C, or T), and CHH, with CHH methylation targeted by the RNAi pathway. Arabidopsis
thaliana endosperm, a placenta-like tissue that nourishes the embryo, is globally
hypomethylated in the CG context while retaining high non-CG methylation. Global
methylation dynamics in seeds of cereal crops that provide the bulk of human nutrition
remain unknown. Here, we show that rice endosperm DNA is hypomethylated in all
sequence contexts. Non-CG methylation is reduced evenly across the genome, whereas
CG hypomethylation is localized. CHH methylation of small transposable elements
is increased in embryos, suggesting that endosperm demethylation enhances transposon
silencing. Genes preferentially expressed in endosperm, including those coding
for major storage proteins and starch synthesizing enzymes, are frequently hypomethylated
in endosperm, indicating that DNA methylation is a crucial regulator of rice endosperm
biogenesis. Our data show that genome-wide reshaping of seed DNA methylation is
conserved among angiosperms and has a profound effect on gene expression in cereal
crops.'
article_processing_charge: No
article_type: original
author:
- first_name: Assaf
full_name: Zemach, Assaf
last_name: Zemach
- first_name: M. Yvonne
full_name: Kim, M. Yvonne
last_name: Kim
- first_name: Pedro
full_name: Silva, Pedro
last_name: Silva
- first_name: Jessica A.
full_name: Rodrigues, Jessica A.
last_name: Rodrigues
- first_name: Bradley
full_name: Dotson, Bradley
last_name: Dotson
- first_name: Matthew D.
full_name: Brooks, Matthew D.
last_name: Brooks
- first_name: Daniel
full_name: Zilberman, Daniel
id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
last_name: Zilberman
orcid: 0000-0002-0123-8649
citation:
ama: Zemach A, Kim MY, Silva P, et al. Local DNA hypomethylation activates genes
in rice endosperm. Proceedings of the National Academy of Sciences. 2010;107(43):18729-18734.
doi:10.1073/pnas.1009695107
apa: Zemach, A., Kim, M. Y., Silva, P., Rodrigues, J. A., Dotson, B., Brooks, M.
D., & Zilberman, D. (2010). Local DNA hypomethylation activates genes in rice
endosperm. Proceedings of the National Academy of Sciences. National Academy
of Sciences. https://doi.org/10.1073/pnas.1009695107
chicago: Zemach, Assaf, M. Yvonne Kim, Pedro Silva, Jessica A. Rodrigues, Bradley
Dotson, Matthew D. Brooks, and Daniel Zilberman. “Local DNA Hypomethylation Activates
Genes in Rice Endosperm.” Proceedings of the National Academy of Sciences.
National Academy of Sciences, 2010. https://doi.org/10.1073/pnas.1009695107.
ieee: A. Zemach et al., “Local DNA hypomethylation activates genes in rice
endosperm,” Proceedings of the National Academy of Sciences, vol. 107,
no. 43. National Academy of Sciences, pp. 18729–18734, 2010.
ista: Zemach A, Kim MY, Silva P, Rodrigues JA, Dotson B, Brooks MD, Zilberman D.
2010. Local DNA hypomethylation activates genes in rice endosperm. Proceedings
of the National Academy of Sciences. 107(43), 18729–18734.
mla: Zemach, Assaf, et al. “Local DNA Hypomethylation Activates Genes in Rice Endosperm.”
Proceedings of the National Academy of Sciences, vol. 107, no. 43, National
Academy of Sciences, 2010, pp. 18729–34, doi:10.1073/pnas.1009695107.
short: A. Zemach, M.Y. Kim, P. Silva, J.A. Rodrigues, B. Dotson, M.D. Brooks, D.
Zilberman, Proceedings of the National Academy of Sciences 107 (2010) 18729–18734.
date_created: 2021-06-07T09:31:01Z
date_published: 2010-10-26T00:00:00Z
date_updated: 2021-12-14T08:40:02Z
day: '26'
department:
- _id: DaZi
doi: 10.1073/pnas.1009695107
extern: '1'
external_id:
pmid:
- '20937895'
intvolume: ' 107'
issue: '43'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1073/pnas.1009695107
month: '10'
oa: 1
oa_version: Published Version
page: 18729-18734
pmid: 1
publication: Proceedings of the National Academy of Sciences
publication_identifier:
eissn:
- 1091-6490
issn:
- 0027-8424
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Local DNA hypomethylation activates genes in rice endosperm
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 107
year: '2010'
...
---
_id: '9489'
abstract:
- lang: eng
text: Cytosine methylation is an ancient process with conserved enzymology but diverse
biological functions that include defense against transposable elements and regulation
of gene expression. Here we will discuss the evolution and biological significance
of eukaryotic DNA methylation, the likely drivers of that evolution, and major
remaining mysteries.
article_processing_charge: No
article_type: review
author:
- first_name: Assaf
full_name: Zemach, Assaf
last_name: Zemach
- first_name: Daniel
full_name: Zilberman, Daniel
id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
last_name: Zilberman
orcid: 0000-0002-0123-8649
citation:
ama: Zemach A, Zilberman D. Evolution of eukaryotic DNA methylation and the pursuit
of safer sex. Current Biology. 2010;20(17):R780-R785. doi:10.1016/j.cub.2010.07.007
apa: Zemach, A., & Zilberman, D. (2010). Evolution of eukaryotic DNA methylation
and the pursuit of safer sex. Current Biology. Elsevier. https://doi.org/10.1016/j.cub.2010.07.007
chicago: Zemach, Assaf, and Daniel Zilberman. “Evolution of Eukaryotic DNA Methylation
and the Pursuit of Safer Sex.” Current Biology. Elsevier, 2010. https://doi.org/10.1016/j.cub.2010.07.007.
ieee: A. Zemach and D. Zilberman, “Evolution of eukaryotic DNA methylation and the
pursuit of safer sex,” Current Biology, vol. 20, no. 17. Elsevier, pp.
R780–R785, 2010.
ista: Zemach A, Zilberman D. 2010. Evolution of eukaryotic DNA methylation and the
pursuit of safer sex. Current Biology. 20(17), R780–R785.
mla: Zemach, Assaf, and Daniel Zilberman. “Evolution of Eukaryotic DNA Methylation
and the Pursuit of Safer Sex.” Current Biology, vol. 20, no. 17, Elsevier,
2010, pp. R780–85, doi:10.1016/j.cub.2010.07.007.
short: A. Zemach, D. Zilberman, Current Biology 20 (2010) R780–R785.
date_created: 2021-06-07T09:45:27Z
date_published: 2010-09-14T00:00:00Z
date_updated: 2021-12-14T08:52:34Z
day: '14'
department:
- _id: DaZi
doi: 10.1016/j.cub.2010.07.007
extern: '1'
external_id:
pmid:
- '20833323'
intvolume: ' 20'
issue: '17'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.cub.2010.07.007
month: '09'
oa: 1
oa_version: Published Version
page: R780-R785
pmid: 1
publication: Current Biology
publication_identifier:
eissn:
- 1879-0445
issn:
- 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Evolution of eukaryotic DNA methylation and the pursuit of safer sex
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 20
year: '2010'
...
---
_id: '9764'
article_processing_charge: No
author:
- first_name: Ulises
full_name: Rosas, Ulises
last_name: Rosas
- first_name: Nicholas H
full_name: Barton, Nicholas H
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
- first_name: Lucy
full_name: Copsey, Lucy
last_name: Copsey
- first_name: Pierre
full_name: Barbier De Reuille, Pierre
last_name: Barbier De Reuille
- first_name: Enrico
full_name: Coen, Enrico
last_name: Coen
citation:
ama: Rosas U, Barton NH, Copsey L, Barbier De Reuille P, Coen E. Heterosis and the
drift load. 2010. doi:10.1371/journal.pbio.1000429.s003
apa: Rosas, U., Barton, N. H., Copsey, L., Barbier De Reuille, P., & Coen, E.
(2010). Heterosis and the drift load. Public Library of Science. https://doi.org/10.1371/journal.pbio.1000429.s003
chicago: Rosas, Ulises, Nicholas H Barton, Lucy Copsey, Pierre Barbier De Reuille,
and Enrico Coen. “Heterosis and the Drift Load.” Public Library of Science, 2010.
https://doi.org/10.1371/journal.pbio.1000429.s003.
ieee: U. Rosas, N. H. Barton, L. Copsey, P. Barbier De Reuille, and E. Coen, “Heterosis
and the drift load.” Public Library of Science, 2010.
ista: Rosas U, Barton NH, Copsey L, Barbier De Reuille P, Coen E. 2010. Heterosis
and the drift load, Public Library of Science, 10.1371/journal.pbio.1000429.s003.
mla: Rosas, Ulises, et al. Heterosis and the Drift Load. Public Library of
Science, 2010, doi:10.1371/journal.pbio.1000429.s003.
short: U. Rosas, N.H. Barton, L. Copsey, P. Barbier De Reuille, E. Coen, (2010).
date_created: 2021-08-02T09:45:39Z
date_published: 2010-07-20T00:00:00Z
date_updated: 2025-09-30T09:42:52Z
day: '20'
department:
- _id: NiBa
doi: 10.1371/journal.pbio.1000429.s003
month: '07'
oa_version: Published Version
publisher: Public Library of Science
related_material:
record:
- id: '3779'
relation: used_in_publication
status: public
status: public
title: Heterosis and the drift load
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2010'
...
---
_id: '7078'
abstract:
- lang: eng
text: We report resonant ultrasound spectroscopy (RUS), dilatometry/magnetostriction,
magnetotransport, magnetization, specific-heat, and 119Sn Mössbauer spectroscopy
measurements on SnTe and Sn0.995Cr0.005Te. Hall measurements at T=77 K indicate
that our Bridgman-grown single crystals have a p-type carrier concentration of
3.4×1019 cm−3 and that our Cr-doped crystals have an n-type concentration of 5.8×1022 cm−3.
Although our SnTe crystals are diamagnetic over the temperature range 2≤T≤1100 K,
the Cr-doped crystals are room-temperature ferromagnets with a Curie temperature
of 294 K. For each sample type, three-terminal capacitive dilatometry measurements
detect a subtle 0.5 μm distortion at Tc≈85 K. Whereas our RUS measurements on
SnTe show elastic hardening near the structural transition, pointing to co-elastic
behavior, similar measurements on Sn0.995Cr0.005Te show a pronounced softening,
pointing to ferroelastic behavior. Effective Debye temperature, θD, values of
SnTe obtained from 119Sn Mössbauer studies show a hardening of phonons in the
range 60–115 K (θD=162 K) as compared with the 100–300 K range (θD=150 K). In
addition, a precursor softening extending over approximately 100 K anticipates
this collapse at the critical temperature and quantitative analysis over three
decades of its reduced modulus finds ΔC44/C44=A|(T−T0)/T0|−κ with κ=0.50±0.02,
a value indicating a three-dimensional softening of phonon branches at a temperature
T0∼75 K, considerably below Tc. We suggest that the differences in these two types
of elastic behaviors lie in the absence of elastic domain-wall motion in the one
case and their nucleation in the other.
article_number: '184112'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: E. K. H.
full_name: Salje, E. K. H.
last_name: Salje
- first_name: D. J.
full_name: Safarik, D. J.
last_name: Safarik
- first_name: Kimberly A
full_name: Modic, Kimberly A
id: 13C26AC0-EB69-11E9-87C6-5F3BE6697425
last_name: Modic
orcid: 0000-0001-9760-3147
- first_name: J. E.
full_name: Gubernatis, J. E.
last_name: Gubernatis
- first_name: J. C.
full_name: Cooley, J. C.
last_name: Cooley
- first_name: R. D.
full_name: Taylor, R. D.
last_name: Taylor
- first_name: B.
full_name: Mihaila, B.
last_name: Mihaila
- first_name: A.
full_name: Saxena, A.
last_name: Saxena
- first_name: T.
full_name: Lookman, T.
last_name: Lookman
- first_name: J. L.
full_name: Smith, J. L.
last_name: Smith
- first_name: R. A.
full_name: Fisher, R. A.
last_name: Fisher
- first_name: M.
full_name: Pasternak, M.
last_name: Pasternak
- first_name: C. P.
full_name: Opeil, C. P.
last_name: Opeil
- first_name: T.
full_name: Siegrist, T.
last_name: Siegrist
- first_name: P. B.
full_name: Littlewood, P. B.
last_name: Littlewood
- first_name: J. C.
full_name: Lashley, J. C.
last_name: Lashley
citation:
ama: 'Salje EKH, Safarik DJ, Modic KA, et al. Tin telluride: A weakly co-elastic
metal. Physical Review B. 2010;82(18). doi:10.1103/physrevb.82.184112'
apa: 'Salje, E. K. H., Safarik, D. J., Modic, K. A., Gubernatis, J. E., Cooley,
J. C., Taylor, R. D., … Lashley, J. C. (2010). Tin telluride: A weakly co-elastic
metal. Physical Review B. APS. https://doi.org/10.1103/physrevb.82.184112'
chicago: 'Salje, E. K. H., D. J. Safarik, Kimberly A Modic, J. E. Gubernatis, J.
C. Cooley, R. D. Taylor, B. Mihaila, et al. “Tin Telluride: A Weakly Co-Elastic
Metal.” Physical Review B. APS, 2010. https://doi.org/10.1103/physrevb.82.184112.'
ieee: 'E. K. H. Salje et al., “Tin telluride: A weakly co-elastic metal,”
Physical Review B, vol. 82, no. 18. APS, 2010.'
ista: 'Salje EKH, Safarik DJ, Modic KA, Gubernatis JE, Cooley JC, Taylor RD, Mihaila
B, Saxena A, Lookman T, Smith JL, Fisher RA, Pasternak M, Opeil CP, Siegrist T,
Littlewood PB, Lashley JC. 2010. Tin telluride: A weakly co-elastic metal. Physical
Review B. 82(18), 184112.'
mla: 'Salje, E. K. H., et al. “Tin Telluride: A Weakly Co-Elastic Metal.” Physical
Review B, vol. 82, no. 18, 184112, APS, 2010, doi:10.1103/physrevb.82.184112.'
short: E.K.H. Salje, D.J. Safarik, K.A. Modic, J.E. Gubernatis, J.C. Cooley, R.D.
Taylor, B. Mihaila, A. Saxena, T. Lookman, J.L. Smith, R.A. Fisher, M. Pasternak,
C.P. Opeil, T. Siegrist, P.B. Littlewood, J.C. Lashley, Physical Review B 82 (2010).
date_created: 2019-11-19T13:46:28Z
date_published: 2010-11-18T00:00:00Z
date_updated: 2021-01-12T08:11:44Z
day: '18'
doi: 10.1103/physrevb.82.184112
extern: '1'
external_id:
arxiv:
- '1011.1445'
intvolume: ' 82'
issue: '18'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1011.1445
month: '11'
oa: 1
oa_version: Preprint
publication: Physical Review B
publication_identifier:
issn:
- 1098-0121
- 1550-235X
publication_status: published
publisher: APS
quality_controlled: '1'
status: public
title: 'Tin telluride: A weakly co-elastic metal'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 82
year: '2010'
...
---
_id: '7079'
abstract:
- lang: eng
text: We have observed that reacting Pb:Te:Ag:Se in a 1:1:1.9:1 molar ratio gives
rise to what appears to be a predominantly single-phase alloy, which crystallizes
in the PbSe cF8 fcc structure. However, further investigation of the structure
using energy dispersive x-ray analysis reveals the presence of two phases, PbSe
and β-Ag2Te, with identical lattice parameters. The total thermal conductivity
of the formed alloy is remarkably low for a crystalline material, κT<0.6W∕mK at
675K, it is reproducible, and in addition, the compound has good mechanical properties.
article_number: '033519'
article_processing_charge: No
article_type: original
author:
- first_name: Fivos R.
full_name: Drymiotis, Fivos R.
last_name: Drymiotis
- first_name: Tyler B.
full_name: Drye, Tyler B.
last_name: Drye
- first_name: Yisha
full_name: Wang, Yisha
last_name: Wang
- first_name: Jian
full_name: He, Jian
last_name: He
- first_name: Daniel
full_name: Rhodes, Daniel
last_name: Rhodes
- first_name: Kimberly A
full_name: Modic, Kimberly A
id: 13C26AC0-EB69-11E9-87C6-5F3BE6697425
last_name: Modic
orcid: 0000-0001-9760-3147
- first_name: Samantha
full_name: Cawthorne, Samantha
last_name: Cawthorne
- first_name: Qiu Run
full_name: Zhang, Qiu Run
last_name: Zhang
citation:
ama: Drymiotis FR, Drye TB, Wang Y, et al. Structure formation and very low thermal
conductivity in Pb:Te:Ag:Se mixtures. Journal of Applied Physics. 2010;107(3).
doi:10.1063/1.3284946
apa: Drymiotis, F. R., Drye, T. B., Wang, Y., He, J., Rhodes, D., Modic, K. A.,
… Zhang, Q. R. (2010). Structure formation and very low thermal conductivity in
Pb:Te:Ag:Se mixtures. Journal of Applied Physics. AIP. https://doi.org/10.1063/1.3284946
chicago: Drymiotis, Fivos R., Tyler B. Drye, Yisha Wang, Jian He, Daniel Rhodes,
Kimberly A Modic, Samantha Cawthorne, and Qiu Run Zhang. “Structure Formation
and Very Low Thermal Conductivity in Pb:Te:Ag:Se Mixtures.” Journal of Applied
Physics. AIP, 2010. https://doi.org/10.1063/1.3284946.
ieee: F. R. Drymiotis et al., “Structure formation and very low thermal conductivity
in Pb:Te:Ag:Se mixtures,” Journal of Applied Physics, vol. 107, no. 3.
AIP, 2010.
ista: Drymiotis FR, Drye TB, Wang Y, He J, Rhodes D, Modic KA, Cawthorne S, Zhang
QR. 2010. Structure formation and very low thermal conductivity in Pb:Te:Ag:Se
mixtures. Journal of Applied Physics. 107(3), 033519.
mla: Drymiotis, Fivos R., et al. “Structure Formation and Very Low Thermal Conductivity
in Pb:Te:Ag:Se Mixtures.” Journal of Applied Physics, vol. 107, no. 3,
033519, AIP, 2010, doi:10.1063/1.3284946.
short: F.R. Drymiotis, T.B. Drye, Y. Wang, J. He, D. Rhodes, K.A. Modic, S. Cawthorne,
Q.R. Zhang, Journal of Applied Physics 107 (2010).
date_created: 2019-11-19T13:47:24Z
date_published: 2010-02-09T00:00:00Z
date_updated: 2021-01-12T08:11:44Z
day: '09'
doi: 10.1063/1.3284946
extern: '1'
intvolume: ' 107'
issue: '3'
language:
- iso: eng
month: '02'
oa_version: None
publication: Journal of Applied Physics
publication_identifier:
issn:
- 0021-8979
- 1089-7550
publication_status: published
publisher: AIP
quality_controlled: '1'
status: public
title: Structure formation and very low thermal conductivity in Pb:Te:Ag:Se mixtures
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 107
year: '2010'
...
---
_id: '7318'
abstract:
- lang: eng
text: The decomposition reaction of H2O2 aqueous solutions (H2O2 - H2O + 1/2O2)
catalyzed by transition metal oxide powders has been compared with the charging
voltage of nonaqueous Li-O2 cells containing the same catalyst. An inverse linear
relationship between Ln k (rate constant for the H2O2 decomposition) and the charging
voltage has been found, despite differences in media and possible mechanistic
differences. The results suggest that the decomposition may be a reliable, useful,
and fast screening tool for materials that promote the charging process of the
Li-O2 battery and may ultimately give insight into the charging mechanism.
article_number: A180
article_processing_charge: No
article_type: letter_note
author:
- first_name: V.
full_name: Giordani, V.
last_name: Giordani
- first_name: Stefan Alexander
full_name: Freunberger, Stefan Alexander
id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
last_name: Freunberger
orcid: 0000-0003-2902-5319
- first_name: P. G.
full_name: Bruce, P. G.
last_name: Bruce
- first_name: J.-M.
full_name: Tarascon, J.-M.
last_name: Tarascon
- first_name: D.
full_name: Larcher, D.
last_name: Larcher
citation:
ama: Giordani V, Freunberger SA, Bruce PG, Tarascon J-M, Larcher D. H2O2 decomposition
reaction as selecting tool for catalysts in Li–O2 cells. Electrochemical and
Solid-State Letters. 2010;13(12). doi:10.1149/1.3494045
apa: Giordani, V., Freunberger, S. A., Bruce, P. G., Tarascon, J.-M., & Larcher,
D. (2010). H2O2 decomposition reaction as selecting tool for catalysts in Li–O2
cells. Electrochemical and Solid-State Letters. The Electrochemical Society.
https://doi.org/10.1149/1.3494045
chicago: Giordani, V., Stefan Alexander Freunberger, P. G. Bruce, J.-M. Tarascon,
and D. Larcher. “H2O2 Decomposition Reaction as Selecting Tool for Catalysts in
Li–O2 Cells.” Electrochemical and Solid-State Letters. The Electrochemical
Society, 2010. https://doi.org/10.1149/1.3494045.
ieee: V. Giordani, S. A. Freunberger, P. G. Bruce, J.-M. Tarascon, and D. Larcher,
“H2O2 decomposition reaction as selecting tool for catalysts in Li–O2 cells,”
Electrochemical and Solid-State Letters, vol. 13, no. 12. The Electrochemical
Society, 2010.
ista: Giordani V, Freunberger SA, Bruce PG, Tarascon J-M, Larcher D. 2010. H2O2
decomposition reaction as selecting tool for catalysts in Li–O2 cells. Electrochemical
and Solid-State Letters. 13(12), A180.
mla: Giordani, V., et al. “H2O2 Decomposition Reaction as Selecting Tool for Catalysts
in Li–O2 Cells.” Electrochemical and Solid-State Letters, vol. 13, no.
12, A180, The Electrochemical Society, 2010, doi:10.1149/1.3494045.
short: V. Giordani, S.A. Freunberger, P.G. Bruce, J.-M. Tarascon, D. Larcher, Electrochemical
and Solid-State Letters 13 (2010).
date_created: 2020-01-15T12:21:06Z
date_published: 2010-10-04T00:00:00Z
date_updated: 2021-01-12T08:13:01Z
day: '04'
doi: 10.1149/1.3494045
extern: '1'
intvolume: ' 13'
issue: '12'
language:
- iso: eng
month: '10'
oa_version: None
publication: Electrochemical and Solid-State Letters
publication_identifier:
issn:
- 1099-0062
publication_status: published
publisher: The Electrochemical Society
quality_controlled: '1'
status: public
title: H2O2 decomposition reaction as selecting tool for catalysts in Li–O2 cells
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2010'
...
---
_id: '754'
abstract:
- lang: eng
text: 'Most people believe that renaming is easy: simply choose a name at random;
if more than one process selects the same name, then try again. We highlight the
issues that occur when trying to implement such a scheme and shed new light on
the read-write complexity of randomized renaming in an asynchronous environment.
At the heart of our new perspective stands an adaptive implementation of a randomized
test-and-set object, that has poly-logarithmic step complexity per operation,
with high probability. Interestingly, our implementation is anonymous, as it does
not require process identifiers. Based on this implementation, we present two
new randomized renaming algorithms. The first ensures a tight namespace of n names
using O( n log4 n) total steps, with high probability. This significantly improves
on the complexity of the best previously known namespace-optimal algorithms. The
second algorithm achieves a namespace of size k (1 + ε) using O( k log4 k / log2
(1 + ε) ) total steps, both with high probability, where k is the total contention
in the execution. It is the first adaptive randomized renaming algorithm, and
it improves on existing deterministic solutions by providing a smaller namespace,
and by lowering step complexity.'
acknowledgement: The work of Dan Alistarh is supported by the Swiss NCCR MICS project.
The work of Hagit Attiya is supported in part by the Israel Science Foundation (grant
number 953/06).
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Dan-Adrian
full_name: Alistarh, Dan-Adrian
id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
last_name: Alistarh
orcid: 0000-0003-3650-940X
- first_name: Hagit
full_name: Attiya, Hagit
last_name: Attiya
- first_name: Seth
full_name: Gilbert, Seth
last_name: Gilbert
- first_name: Andrei
full_name: Giurgiu, Andrei
last_name: Giurgiu
- first_name: Rachid
full_name: Guerraoui, Rachid
last_name: Guerraoui
citation:
ama: 'Alistarh D-A, Attiya H, Gilbert S, Giurgiu A, Guerraoui R. Fast randomized
test-and-set and renaming. In: Vol 6343 LNCS. Springer; 2010:94-108. doi:10.1007/978-3-642-15763-9_9'
apa: 'Alistarh, D.-A., Attiya, H., Gilbert, S., Giurgiu, A., & Guerraoui, R.
(2010). Fast randomized test-and-set and renaming (Vol. 6343 LNCS, pp. 94–108).
Presented at the DISC: Distributed Computing, Springer. https://doi.org/10.1007/978-3-642-15763-9_9'
chicago: Alistarh, Dan-Adrian, Hagit Attiya, Seth Gilbert, Andrei Giurgiu, and Rachid
Guerraoui. “Fast Randomized Test-and-Set and Renaming,” 6343 LNCS:94–108. Springer,
2010. https://doi.org/10.1007/978-3-642-15763-9_9.
ieee: 'D.-A. Alistarh, H. Attiya, S. Gilbert, A. Giurgiu, and R. Guerraoui, “Fast
randomized test-and-set and renaming,” presented at the DISC: Distributed Computing,
2010, vol. 6343 LNCS, pp. 94–108.'
ista: 'Alistarh D-A, Attiya H, Gilbert S, Giurgiu A, Guerraoui R. 2010. Fast randomized
test-and-set and renaming. DISC: Distributed Computing, LNCS, vol. 6343 LNCS,
94–108.'
mla: Alistarh, Dan-Adrian, et al. Fast Randomized Test-and-Set and Renaming.
Vol. 6343 LNCS, Springer, 2010, pp. 94–108, doi:10.1007/978-3-642-15763-9_9.
short: D.-A. Alistarh, H. Attiya, S. Gilbert, A. Giurgiu, R. Guerraoui, in:, Springer,
2010, pp. 94–108.
conference:
name: 'DISC: Distributed Computing'
date_created: 2018-12-11T11:48:19Z
date_published: 2010-01-01T00:00:00Z
date_updated: 2023-02-23T13:10:21Z
day: '01'
doi: 10.1007/978-3-642-15763-9_9
extern: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: 94 - 108
publication_status: published
publisher: Springer
publist_id: '6900'
status: public
title: Fast randomized test-and-set and renaming
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6343 LNCS
year: '2010'
...
---
_id: '755'
abstract:
- lang: eng
text: 'Gossip, also known as epidemic dissemination, is becoming an increasingly
popular technique in distributed systems. Yet, it has remained a partially open
question: how robust are such protocols? We consider a natural extension of the
random phone-call model (introduced by Karp et al. [1]), and we analyze two different
notions of robustness: the ability to tolerate adaptive failures, and the ability
to tolerate oblivious failures. For adaptive failures, we present a new gossip
protocol, TrickleGossip, which achieves near-optimal O(n log 3 n) message complexity.
To the best of our knowledge, this is the first epidemic-style protocol that can
tolerate adaptive failures. We also show a direct relation between resilience
and message complexity, demonstrating that gossip protocols which tolerate a large
number of adaptive failures need to use a super-linear number of messages with
high probability. For oblivious failures, we present a new gossip protocol, CoordinatedGossip,
that achieves optimal O(n) message complexity. This protocol makes novel use of
the universe reduction technique to limit the message complexity.'
acknowledgement: We would like to thank Prof. Hagit Attiya and the anonymous reviewers
for their useful comments on earlier drafts of this paper.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Dan-Adrian
full_name: Alistarh, Dan-Adrian
id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
last_name: Alistarh
orcid: 0000-0003-3650-940X
- first_name: Seth
full_name: Gilbert, Seth
last_name: Gilbert
- first_name: Rachid
full_name: Guerraoui, Rachid
last_name: Guerraoui
- first_name: Morteza
full_name: Zadimoghaddam, Morteza
last_name: Zadimoghaddam
citation:
ama: 'Alistarh D-A, Gilbert S, Guerraoui R, Zadimoghaddam M. How efficient can gossip
be? (On the cost of resilient information exchange). In: Vol 6199 LNCS. Springer;
2010:115-126. doi:10.1007/978-3-642-14162-1_10'
apa: 'Alistarh, D.-A., Gilbert, S., Guerraoui, R., & Zadimoghaddam, M. (2010).
How efficient can gossip be? (On the cost of resilient information exchange) (Vol.
6199 LNCS, pp. 115–126). Presented at the ICALP: International Colloquium on Automota,
Languages and Programming, Springer. https://doi.org/10.1007/978-3-642-14162-1_10'
chicago: Alistarh, Dan-Adrian, Seth Gilbert, Rachid Guerraoui, and Morteza Zadimoghaddam.
“How Efficient Can Gossip Be? (On the Cost of Resilient Information Exchange),”
6199 LNCS:115–26. Springer, 2010. https://doi.org/10.1007/978-3-642-14162-1_10.
ieee: 'D.-A. Alistarh, S. Gilbert, R. Guerraoui, and M. Zadimoghaddam, “How efficient
can gossip be? (On the cost of resilient information exchange),” presented at
the ICALP: International Colloquium on Automota, Languages and Programming, 2010,
vol. 6199 LNCS, no. PART 2, pp. 115–126.'
ista: 'Alistarh D-A, Gilbert S, Guerraoui R, Zadimoghaddam M. 2010. How efficient
can gossip be? (On the cost of resilient information exchange). ICALP: International
Colloquium on Automota, Languages and Programming, LNCS, vol. 6199 LNCS, 115–126.'
mla: Alistarh, Dan-Adrian, et al. How Efficient Can Gossip Be? (On the Cost of
Resilient Information Exchange). Vol. 6199 LNCS, no. PART 2, Springer, 2010,
pp. 115–26, doi:10.1007/978-3-642-14162-1_10.
short: D.-A. Alistarh, S. Gilbert, R. Guerraoui, M. Zadimoghaddam, in:, Springer,
2010, pp. 115–126.
conference:
name: 'ICALP: International Colloquium on Automota, Languages and Programming'
date_created: 2018-12-11T11:48:20Z
date_published: 2010-01-01T00:00:00Z
date_updated: 2023-02-23T13:10:40Z
day: '01'
doi: 10.1007/978-3-642-14162-1_10
extern: '1'
issue: PART 2
language:
- iso: eng
month: '01'
oa_version: None
page: 115 - 126
publication_status: published
publisher: Springer
publist_id: '6901'
status: public
title: How efficient can gossip be? (On the cost of resilient information exchange)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6199 LNCS
year: '2010'
...
---
_id: '756'
abstract:
- lang: eng
text: This paper studies non-cryptographic authenticated broadcast in radio networks
subject to malicious failures. We introduce two protocols that address this problem.
The first, NeighborWatchRB, makes use of a novel strategy in which honest devices
monitor their neighbors for malicious behavior. Second, we present a more robust
variant, MultiPathRB, that tolerates the maximum possible density of malicious
devices per region, using an elaborate voting strategy. We also introduce a new
proof technique to show that both protocols ensure asymptotically optimal running
time. We demonstrate the fault tolerance of our protocols through extensive simulation.
Simulations show the practical superiority of the NeighborWatchRB protocol (an
advantage hidden in the constants of the asymptotic complexity). The NeighborWatchRB
protocol even performs relatively well when compared to the simple, fast epidemic
protocols commonly used in the radio setting, protocols that tolerate no malicious
faults. We therefore believe that the overhead for ensuring authenticated broadcast
is reasonable, especially in applications that use authenticated broadcast only
when necessary, such as distributing an authenticated digest.
acknowledgement: "The authors would like to thank Prof. Guevara Noubir for his useful
comments on earlier\r\ndrafts of this paper."
article_processing_charge: No
author:
- first_name: Dan-Adrian
full_name: Alistarh, Dan-Adrian
id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
last_name: Alistarh
orcid: 0000-0003-3650-940X
- first_name: Seth
full_name: Gilbert, Seth
last_name: Gilbert
- first_name: Rachid
full_name: Guerraoui, Rachid
last_name: Guerraoui
- first_name: Žarko
full_name: Milošević, Žarko
last_name: Milošević
- first_name: Calvin
full_name: Newport, Calvin
last_name: Newport
citation:
ama: 'Alistarh D-A, Gilbert S, Guerraoui R, Milošević Ž, Newport C. Securing every
bit: Authenticated broadcast in radio networks. In: ACM; 2010:50-59. doi:10.1145/1810479.1810489'
apa: 'Alistarh, D.-A., Gilbert, S., Guerraoui, R., Milošević, Ž., & Newport,
C. (2010). Securing every bit: Authenticated broadcast in radio networks (pp.
50–59). Presented at the SPAA: Symposium on Parallelism in Algorithms and Architectures,
ACM. https://doi.org/10.1145/1810479.1810489'
chicago: 'Alistarh, Dan-Adrian, Seth Gilbert, Rachid Guerraoui, Žarko Milošević,
and Calvin Newport. “Securing Every Bit: Authenticated Broadcast in Radio Networks,”
50–59. ACM, 2010. https://doi.org/10.1145/1810479.1810489.'
ieee: 'D.-A. Alistarh, S. Gilbert, R. Guerraoui, Ž. Milošević, and C. Newport, “Securing
every bit: Authenticated broadcast in radio networks,” presented at the SPAA:
Symposium on Parallelism in Algorithms and Architectures, 2010, pp. 50–59.'
ista: 'Alistarh D-A, Gilbert S, Guerraoui R, Milošević Ž, Newport C. 2010. Securing
every bit: Authenticated broadcast in radio networks. SPAA: Symposium on Parallelism
in Algorithms and Architectures, 50–59.'
mla: 'Alistarh, Dan-Adrian, et al. Securing Every Bit: Authenticated Broadcast
in Radio Networks. ACM, 2010, pp. 50–59, doi:10.1145/1810479.1810489.'
short: D.-A. Alistarh, S. Gilbert, R. Guerraoui, Ž. Milošević, C. Newport, in:,
ACM, 2010, pp. 50–59.
conference:
name: 'SPAA: Symposium on Parallelism in Algorithms and Architectures'
date_created: 2018-12-11T11:48:20Z
date_published: 2010-01-01T00:00:00Z
date_updated: 2023-02-23T13:10:56Z
day: '01'
doi: 10.1145/1810479.1810489
extern: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: 50 - 59
publication_status: published
publisher: ACM
publist_id: '6902'
status: public
title: 'Securing every bit: Authenticated broadcast in radio networks'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2010'
...
---
OA_place: repository
OA_type: green
_id: '22029'
abstract:
- lang: eng
text: We consider two classes of defocusing energy-supercritical nonlinear Schrödinger
equations in dimensions d ≥ 5. We prove that if the solution u is a priori bounded
in the critical Sobolev space, that is, {mathematical formular} , then u is global
and scatters.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Rowan
full_name: Killip, Rowan
last_name: Killip
- first_name: Monica
full_name: Visan, Monica
id: 056daca0-b8d1-11f0-964f-f91054abf8ca
last_name: Visan
citation:
ama: 'Killip R, Vişan M. Energy-supercritical NLS: Critical [Hdot]^s-bounds imply
scattering. Communications in Partial Differential Equations. 2010;35(6):945-987.
doi:10.1080/03605301003717084'
apa: 'Killip, R., & Vişan, M. (2010). Energy-supercritical NLS: Critical [Hdot]^s-bounds
imply scattering. Communications in Partial Differential Equations. Informa
UK Limited. https://doi.org/10.1080/03605301003717084'
chicago: 'Killip, Rowan, and Monica Vişan. “Energy-Supercritical NLS: Critical [Hdot]^s-Bounds
Imply Scattering.” Communications in Partial Differential Equations. Informa
UK Limited, 2010. https://doi.org/10.1080/03605301003717084.'
ieee: 'R. Killip and M. Vişan, “Energy-supercritical NLS: Critical [Hdot]^s-bounds
imply scattering,” Communications in Partial Differential Equations, vol.
35, no. 6. Informa UK Limited, pp. 945–987, 2010.'
ista: 'Killip R, Vişan M. 2010. Energy-supercritical NLS: Critical [Hdot]^s-bounds
imply scattering. Communications in Partial Differential Equations. 35(6), 945–987.'
mla: 'Killip, Rowan, and Monica Vişan. “Energy-Supercritical NLS: Critical [Hdot]^s-Bounds
Imply Scattering.” Communications in Partial Differential Equations, vol.
35, no. 6, Informa UK Limited, 2010, pp. 945–87, doi:10.1080/03605301003717084.'
short: R. Killip, M. Vişan, Communications in Partial Differential Equations 35
(2010) 945–987.
date_created: 2026-06-19T07:41:22Z
date_published: 2010-06-01T00:00:00Z
date_updated: 2026-06-29T06:32:07Z
day: '01'
doi: 10.1080/03605301003717084
extern: '1'
external_id:
arxiv:
- '0812.2084'
intvolume: ' 35'
issue: '6'
keyword:
- critical regularity
- Nonlinear Schrödinger equations
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.0812.2084
month: '06'
oa: 1
oa_version: Preprint
page: 945-987
publication: Communications in Partial Differential Equations
publication_identifier:
eissn:
- 1532-4133
issn:
- 0360-5302
publication_status: published
publisher: Informa UK Limited
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Energy-supercritical NLS: Critical [Hdot]^s-bounds imply scattering'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 35
year: '2010'
...
---
OA_place: repository
OA_type: green
_id: '22089'
abstract:
- lang: eng
text: "We consider the focusing energy-critical nonlinear Schr\\\"odinger equation
\r\n$iu_t+\\Delta u = - |u|^{4\\over{d-2}}u$ in dimensions $d\\geq 5$. We prove
\r\nthat if a maximal-lifespan solution $u\\colon \\ I\\times {\\Bbb R}^d\\to
{\\Bbb C}$ obeys $\\sup_{t\\in I}\\|\\nabla u(t)\\|_2<\\|\\nabla W\\|_2$, then
it is \r\nglobal and scatters both forward and backward in time. Here $W$ denotes
\r\nthe ground state, which is a stationary solution of the equation. In \r\nparticular,
if a solution has both energy and kinetic energy less than \r\nthose of the ground
state $W$ at some point in time, then the solution is \r\nglobal and scatters.
We also show that any solution that blows up with \r\nbounded kinetic energy must
concentrate at least the kinetic energy of the \r\nground state. Similar results
were obtained by Kenig and Merle for \r\nspherically symmetric initial data and
dimensions $d=3,4,5$.\r\n"
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Rowan
full_name: Killip, Rowan
last_name: Killip
- first_name: Monica
full_name: Visan, Monica
id: 056daca0-b8d1-11f0-964f-f91054abf8ca
last_name: Visan
citation:
ama: Killip R, Vişan M. The focusing energy-critical nonlinear Schrödinger equation
in dimensions five and higher. American Journal of Mathematics. 2010;132(2):361-424.
doi:10.1353/ajm.0.0107
apa: Killip, R., & Vişan, M. (2010). The focusing energy-critical nonlinear
Schrödinger equation in dimensions five and higher. American Journal of Mathematics.
Johns Hopkins University Press. https://doi.org/10.1353/ajm.0.0107
chicago: Killip, Rowan, and Monica Vişan. “The Focusing Energy-Critical Nonlinear
Schrödinger Equation in Dimensions Five and Higher.” American Journal of Mathematics.
Johns Hopkins University Press, 2010. https://doi.org/10.1353/ajm.0.0107.
ieee: R. Killip and M. Vişan, “The focusing energy-critical nonlinear Schrödinger
equation in dimensions five and higher,” American Journal of Mathematics,
vol. 132, no. 2. Johns Hopkins University Press, pp. 361–424, 2010.
ista: Killip R, Vişan M. 2010. The focusing energy-critical nonlinear Schrödinger
equation in dimensions five and higher. American Journal of Mathematics. 132(2),
361–424.
mla: Killip, Rowan, and Monica Vişan. “The Focusing Energy-Critical Nonlinear Schrödinger
Equation in Dimensions Five and Higher.” American Journal of Mathematics,
vol. 132, no. 2, Johns Hopkins University Press, 2010, pp. 361–424, doi:10.1353/ajm.0.0107.
short: R. Killip, M. Vişan, American Journal of Mathematics 132 (2010) 361–424.
das_tickbox: '1'
date_created: 2026-06-19T08:48:46Z
date_published: 2010-04-01T00:00:00Z
date_updated: 2026-07-01T12:52:05Z
day: '01'
doi: 10.1353/ajm.0.0107
extern: '1'
external_id:
arxiv:
- '0804.1018'
intvolume: ' 132'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.0804.1018
month: '04'
oa: 1
oa_version: Preprint
page: 361-424
publication: American Journal of Mathematics
publication_identifier:
eissn:
- 1080-6377
publication_status: published
publisher: Johns Hopkins University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: The focusing energy-critical nonlinear Schrödinger equation in dimensions five
and higher
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 132
year: '2010'
...
---
_id: '110'
abstract:
- lang: eng
text: In order to better understand magnetic reconnection and particle acceleration
in solar flares, we compare the RHESSI hard X-ray (HXR) footpoint motions of three
flares with a detailed study of the corresponding topology given by a Magnetic
Charge Topology model. We analyze the relationship between the footpoint motions
and topological spine lines and find that the examined footpoint sources move
along spine lines. We present a three-dimensional topological model in which this
movement can be understood. As reconnection proceeds, flux is transferred between
the reconnecting domains, causing the separator to move. The movement of the separator\'s
chromospheric ends, identified with the HXR footpoints, is along those spine lines
on which the separator ends.
acknowledgement: This work was supported by RHESSI funds from the University of California
at Berkeley through a contract, SA1868-26308PG, with Montana State University. Funding
for our Research Experience for Undergraduates (REU) students was provided by NSF
grant ATM-0243923.
author:
- first_name: Angela
full_name: Des Jardins, Angela
last_name: Des Jardins
- first_name: Richard
full_name: Canfield, Richard
last_name: Canfield
- first_name: Dana
full_name: Longcope, Dana
last_name: Longcope
- first_name: Crystal
full_name: Fordyce, Crystal
last_name: Fordyce
- first_name: Scott R
full_name: Waitukaitis, Scott R
id: 3A1FFC16-F248-11E8-B48F-1D18A9856A87
last_name: Waitukaitis
orcid: 0000-0002-2299-3176
citation:
ama: 'Des Jardins A, Canfield R, Longcope D, Fordyce C, Waitukaitis SR. Reconnection
in three dimensions: The role of spines in three eruptive flares. The Astrophysical
Journal. 2009;693(2):1628-1636. doi:10.1088/0004-637X/693/2/1628'
apa: 'Des Jardins, A., Canfield, R., Longcope, D., Fordyce, C., & Waitukaitis,
S. R. (2009). Reconnection in three dimensions: The role of spines in three eruptive
flares. The Astrophysical Journal. IOP Publishing Ltd. https://doi.org/10.1088/0004-637X/693/2/1628'
chicago: 'Des Jardins, Angela, Richard Canfield, Dana Longcope, Crystal Fordyce,
and Scott R Waitukaitis. “Reconnection in Three Dimensions: The Role of Spines
in Three Eruptive Flares.” The Astrophysical Journal. IOP Publishing Ltd.,
2009. https://doi.org/10.1088/0004-637X/693/2/1628.'
ieee: 'A. Des Jardins, R. Canfield, D. Longcope, C. Fordyce, and S. R. Waitukaitis,
“Reconnection in three dimensions: The role of spines in three eruptive flares,”
The Astrophysical Journal, vol. 693, no. 2. IOP Publishing Ltd., pp. 1628–1636,
2009.'
ista: 'Des Jardins A, Canfield R, Longcope D, Fordyce C, Waitukaitis SR. 2009. Reconnection
in three dimensions: The role of spines in three eruptive flares. The Astrophysical
Journal. 693(2), 1628–1636.'
mla: 'Des Jardins, Angela, et al. “Reconnection in Three Dimensions: The Role of
Spines in Three Eruptive Flares.” The Astrophysical Journal, vol. 693,
no. 2, IOP Publishing Ltd., 2009, pp. 1628–36, doi:10.1088/0004-637X/693/2/1628.'
short: A. Des Jardins, R. Canfield, D. Longcope, C. Fordyce, S.R. Waitukaitis, The
Astrophysical Journal 693 (2009) 1628–1636.
date_created: 2018-12-11T11:44:41Z
date_published: 2009-03-10T00:00:00Z
date_updated: 2021-01-12T06:48:16Z
day: '10'
doi: 10.1088/0004-637X/693/2/1628
extern: '1'
intvolume: ' 693'
issue: '2'
language:
- iso: eng
month: '03'
oa_version: None
page: 1628 - 1636
publication: The Astrophysical Journal
publication_status: published
publisher: IOP Publishing Ltd.
publist_id: '7944'
quality_controlled: '1'
status: public
title: 'Reconnection in three dimensions: The role of spines in three eruptive flares'
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 693
year: '2009'
...