---
_id: '3055'
abstract:
- lang: eng
  text: 'ACAP-type ARF GTPase activating proteins (ARF-GAPs) regulate multiple cellular
    processes, including endocytosis, secretion, phagocytosis, cell adhesion and cell
    migration. However, the regulation of ACAP functions by other cellular proteins
    is poorly understood. We have reported previously that a plant ACAP, VAN3, plays
    a pivotal role in plant venation continuity. Here, we report on newly identified
    VAN3 regulators: the CVP2 (cotyledon vascular pattern 2) 5 PTase, which is considered
    to degrade IP3 and also to produce PtdIns(4)P from PtdIns(4,5)P2; and a PH domain-containing
    protein, VAB (VAN3 binding protein). Combinational mutations of both CVP2 and
    its closest homologue CVL1 (CVP2 like 1) phenocopied the strong allele of van3
    mutants, showing severe vascular continuity. The phenotype of double mutants between
    van3, cvp2 and vab suggested that VAN3, CVP2 and VAB function in vascular pattern
    formation in the same pathway. Localization analysis revealed that both CVP2 and
    VAB colocalize with VAN3 in the trans- Golgi network (TGN), supporting their functions
    in the same pathway. The subcellular localization of VAN3 was dependent on its
    PH domain, and mislocalization of VAN3 was induced in cvp2 or vab mutants. These
    results suggest that CVP2 and VAB cooperatively regulate the subcellular localization
    of VAN3 through the interaction between its PH domain and phosphoinositides and/or
    inositol phosphates. In addition, PtdIns(4)P, to which VAN3 binds preferentially,
    enhanced the ARF-GAP activity of VAN3, whereas IP3 inhibited it. These results
    suggest the existence of PtdIns(4)P and/or IP3-dependent subcellular targeting
    and regulation of VAN3 ACAP activity that governs plant vascular tissue continuity.'
author:
- first_name: Satoshi
  full_name: Naramoto, Satoshi
  last_name: Naramoto
- first_name: Shinichiro
  full_name: Sawa, Shinichiro
  last_name: Sawa
- first_name: Koji
  full_name: Koizumi, Koji
  last_name: Koizumi
- first_name: Tomohiro
  full_name: Uemura, Tomohiro
  last_name: Uemura
- first_name: Takashi
  full_name: Ueda, Takashi
  last_name: Ueda
- first_name: Jirí
  full_name: Jirí Friml
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Akihiko
  full_name: Nakano, Akihiko
  last_name: Nakano
- first_name: Hiroo
  full_name: Fukuda, Hiroo
  last_name: Fukuda
citation:
  ama: Naramoto S, Sawa S, Koizumi K, et al. Phosphoinositide-dependent regulation
    of VAN3 ARF-GAP localization and activity essential for vascular tissue continuity
    in plants. <i>Development</i>. 2009;136(9):1529-1538. doi:<a href="https://doi.org/10.1242/dev.030098">10.1242/dev.030098</a>
  apa: Naramoto, S., Sawa, S., Koizumi, K., Uemura, T., Ueda, T., Friml, J., … Fukuda,
    H. (2009). Phosphoinositide-dependent regulation of VAN3 ARF-GAP localization
    and activity essential for vascular tissue continuity in plants. <i>Development</i>.
    Company of Biologists. <a href="https://doi.org/10.1242/dev.030098">https://doi.org/10.1242/dev.030098</a>
  chicago: Naramoto, Satoshi, Shinichiro Sawa, Koji Koizumi, Tomohiro Uemura, Takashi
    Ueda, Jiří Friml, Akihiko Nakano, and Hiroo Fukuda. “Phosphoinositide-Dependent
    Regulation of VAN3 ARF-GAP Localization and Activity Essential for Vascular Tissue
    Continuity in Plants.” <i>Development</i>. Company of Biologists, 2009. <a href="https://doi.org/10.1242/dev.030098">https://doi.org/10.1242/dev.030098</a>.
  ieee: S. Naramoto <i>et al.</i>, “Phosphoinositide-dependent regulation of VAN3
    ARF-GAP localization and activity essential for vascular tissue continuity in
    plants,” <i>Development</i>, vol. 136, no. 9. Company of Biologists, pp. 1529–1538,
    2009.
  ista: Naramoto S, Sawa S, Koizumi K, Uemura T, Ueda T, Friml J, Nakano A, Fukuda
    H. 2009. Phosphoinositide-dependent regulation of VAN3 ARF-GAP localization and
    activity essential for vascular tissue continuity in plants. Development. 136(9),
    1529–1538.
  mla: Naramoto, Satoshi, et al. “Phosphoinositide-Dependent Regulation of VAN3 ARF-GAP
    Localization and Activity Essential for Vascular Tissue Continuity in Plants.”
    <i>Development</i>, vol. 136, no. 9, Company of Biologists, 2009, pp. 1529–38,
    doi:<a href="https://doi.org/10.1242/dev.030098">10.1242/dev.030098</a>.
  short: S. Naramoto, S. Sawa, K. Koizumi, T. Uemura, T. Ueda, J. Friml, A. Nakano,
    H. Fukuda, Development 136 (2009) 1529–1538.
date_created: 2018-12-11T12:01:06Z
date_published: 2009-05-01T00:00:00Z
date_updated: 2021-01-12T07:40:44Z
day: '01'
doi: 10.1242/dev.030098
extern: 1
intvolume: '       136'
issue: '9'
month: '05'
page: 1529 - 1538
publication: Development
publication_status: published
publisher: Company of Biologists
publist_id: '3647'
quality_controlled: 0
status: public
title: Phosphoinositide-dependent regulation of VAN3 ARF-GAP localization and activity
  essential for vascular tissue continuity in plants
type: journal_article
volume: 136
year: '2009'
...
---
_id: '3056'
abstract:
- lang: eng
  text: Local hormone maxima are essential for the development of multicellular structures
    and organs. For example, steroid hormones accumulate in specific cell types of
    the animal fetus to induce sexual differentiation and concentration peaks of the
    plant hormone auxin direct organ initiation and mediate tissue patterning. Here
    we provide an example of a regulated local hormone minimum required during organogenesis.
    Our results demonstrate that formation of a local auxin minimum is necessary for
    specification of the valve margin separation layer where Arabidopsis fruit opening
    takes place. Consequently, ectopic production of auxin, specifically in valve
    margin cells, leads to a complete loss of proper cell fate determination. The
    valve margin identity factor INDEHISCENT (IND) is responsible for forming the
    auxin minimum by coordinating auxin efflux in separation-layer cells. We propose
    that the simplicity of formation and maintenance make local hormone minima particularly
    well suited to specify a small number of cells such as the stripes at the valve
    margins.
author:
- first_name: Karim
  full_name: Sorefan, Karim
  last_name: Sorefan
- first_name: Thomas
  full_name: Girin, Thomas
  last_name: Girin
- first_name: Sarah
  full_name: Liljegren, Sarah J
  last_name: Liljegren
- first_name: Karin
  full_name: Ljung, Karin
  last_name: Ljung
- first_name: Pedro
  full_name: Robles, Pedro
  last_name: Robles
- first_name: Carlos
  full_name: Galván-Ampudia, Carlos S
  last_name: Galván Ampudia
- first_name: Remko
  full_name: Offringa, Remko
  last_name: Offringa
- first_name: Jirí
  full_name: Jirí Friml
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Martin
  full_name: Yanofsky, Martin F
  last_name: Yanofsky
- first_name: Lars
  full_name: Østergaard, Lars
  last_name: Østergaard
citation:
  ama: Sorefan K, Girin T, Liljegren S, et al. A regulated auxin minimum is required
    for seed dispersal in Arabidopsis. <i>Nature</i>. 2009;459(7246):583-586. doi:<a
    href="https://doi.org/10.1038/nature07875">10.1038/nature07875</a>
  apa: Sorefan, K., Girin, T., Liljegren, S., Ljung, K., Robles, P., Galván Ampudia,
    C., … Østergaard, L. (2009). A regulated auxin minimum is required for seed dispersal
    in Arabidopsis. <i>Nature</i>. Nature Publishing Group. <a href="https://doi.org/10.1038/nature07875">https://doi.org/10.1038/nature07875</a>
  chicago: Sorefan, Karim, Thomas Girin, Sarah Liljegren, Karin Ljung, Pedro Robles,
    Carlos Galván Ampudia, Remko Offringa, Jiří Friml, Martin Yanofsky, and Lars Østergaard.
    “A Regulated Auxin Minimum Is Required for Seed Dispersal in Arabidopsis.” <i>Nature</i>.
    Nature Publishing Group, 2009. <a href="https://doi.org/10.1038/nature07875">https://doi.org/10.1038/nature07875</a>.
  ieee: K. Sorefan <i>et al.</i>, “A regulated auxin minimum is required for seed
    dispersal in Arabidopsis,” <i>Nature</i>, vol. 459, no. 7246. Nature Publishing
    Group, pp. 583–586, 2009.
  ista: Sorefan K, Girin T, Liljegren S, Ljung K, Robles P, Galván Ampudia C, Offringa
    R, Friml J, Yanofsky M, Østergaard L. 2009. A regulated auxin minimum is required
    for seed dispersal in Arabidopsis. Nature. 459(7246), 583–586.
  mla: Sorefan, Karim, et al. “A Regulated Auxin Minimum Is Required for Seed Dispersal
    in Arabidopsis.” <i>Nature</i>, vol. 459, no. 7246, Nature Publishing Group, 2009,
    pp. 583–86, doi:<a href="https://doi.org/10.1038/nature07875">10.1038/nature07875</a>.
  short: K. Sorefan, T. Girin, S. Liljegren, K. Ljung, P. Robles, C. Galván Ampudia,
    R. Offringa, J. Friml, M. Yanofsky, L. Østergaard, Nature 459 (2009) 583–586.
date_created: 2018-12-11T12:01:06Z
date_published: 2009-05-28T00:00:00Z
date_updated: 2021-01-12T07:40:44Z
day: '28'
doi: 10.1038/nature07875
extern: 1
intvolume: '       459'
issue: '7246'
month: '05'
page: 583 - 586
publication: Nature
publication_status: published
publisher: Nature Publishing Group
publist_id: '3646'
quality_controlled: 0
status: public
title: A regulated auxin minimum is required for seed dispersal in Arabidopsis
type: journal_article
volume: 459
year: '2009'
...
---
_id: '3057'
abstract:
- lang: eng
  text: The differential distribution of the plant signaling molecule auxin is required
    for many aspects of plant development. Local auxin maxima and gradients arise
    as a result of local auxin metabolism and, predominantly, from directional cell-to-cell
    transport. In this primer, we discuss how the coordinated activity of several
    auxin influx and efflux systems, which transport auxin across the plasma membrane,
    mediates directional auxin flow. This activity crucially contributes to the correct
    setting of developmental cues in embryogenesis, organogenesis, vascular tissue
    formation and directional growth in response to environmental stimuli.
author:
- first_name: Jan
  full_name: Petrášek, Jan
  last_name: Petrášek
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Petrášek J, Friml J. Auxin transport routes in plant development. <i>Development</i>.
    2009;136(16):2675-2688. doi:<a href="https://doi.org/10.1242/dev.030353">10.1242/dev.030353</a>
  apa: Petrášek, J., &#38; Friml, J. (2009). Auxin transport routes in plant development.
    <i>Development</i>. Company of Biologists. <a href="https://doi.org/10.1242/dev.030353">https://doi.org/10.1242/dev.030353</a>
  chicago: Petrášek, Jan, and Jiří Friml. “Auxin Transport Routes in Plant Development.”
    <i>Development</i>. Company of Biologists, 2009. <a href="https://doi.org/10.1242/dev.030353">https://doi.org/10.1242/dev.030353</a>.
  ieee: J. Petrášek and J. Friml, “Auxin transport routes in plant development,” <i>Development</i>,
    vol. 136, no. 16. Company of Biologists, pp. 2675–2688, 2009.
  ista: Petrášek J, Friml J. 2009. Auxin transport routes in plant development. Development.
    136(16), 2675–2688.
  mla: Petrášek, Jan, and Jiří Friml. “Auxin Transport Routes in Plant Development.”
    <i>Development</i>, vol. 136, no. 16, Company of Biologists, 2009, pp. 2675–88,
    doi:<a href="https://doi.org/10.1242/dev.030353">10.1242/dev.030353</a>.
  short: J. Petrášek, J. Friml, Development 136 (2009) 2675–2688.
date_created: 2018-12-11T12:01:07Z
date_published: 2009-08-15T00:00:00Z
date_updated: 2021-01-12T07:40:45Z
day: '15'
doi: 10.1242/dev.030353
extern: '1'
external_id:
  pmid:
  - '    19633168'
intvolume: '       136'
issue: '16'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pubmed/19633168
month: '08'
oa: 1
oa_version: Published Version
page: 2675 - 2688
pmid: 1
publication: Development
publication_status: published
publisher: Company of Biologists
publist_id: '3644'
quality_controlled: '1'
status: public
title: Auxin transport routes in plant development
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 136
year: '2009'
...
---
_id: '3058'
abstract:
- lang: eng
  text: The plant signalling molecule auxin provides positional informa-tion in a
    variety of developmental processes by means of its differential distribution (gradients)
    within plant tissues. Thus, cellular auxin levels often determine the developmental
    output of auxin signalling. Conceptually, transmembrane transport and metabolic
    processes regulate the steady-state levels of auxin in any given cell2,3. In particular,
    PIN auxin-efflux-carrier-mediated, directional transport between cells is crucial
    for generating auxin gradients2,4,5. Here we show that Arabidopsis thaliana PIN5,
    an atypical member of the PIN gene family, encodes a functional auxin transporter
    that is required for auxin-mediated develop-ment. PIN5 does not have a direct
    role in cell-to-cell transport but regulates intracellular auxin homeostasis and
    metabolism. PIN5 localizes, unlike other characterized plasma membrane PIN proteins,
    to endoplasmic reticulum (ER), presumably medi-ating auxin flow from the cytosol
    to the lumen of the ER. The ER localization of other PIN5-like transporters (including
    the moss PIN) indicates that the diversification of PIN protein functions in mediating
    auxin homeostasis at the ER, and cell-to-cell auxin transport at the plasma membrane,
    represent an ancient event during the evolution of land plants.
author:
- first_name: Jozef
  full_name: Mravec, Jozef
  last_name: Mravec
- first_name: Petr
  full_name: Skůpa, Petr
  last_name: Skůpa
- first_name: Aurélien
  full_name: Bailly, Aurélien
  last_name: Bailly
- first_name: Klára
  full_name: Hoyerová, Klára
  last_name: Hoyerová
- first_name: Pavel
  full_name: Křeček, Pavel
  last_name: Křeček
- first_name: Agnieszka
  full_name: Bielach, Agnieszka
  last_name: Bielach
- first_name: Jan
  full_name: Petrášek, Jan
  last_name: Petrášek
- first_name: Jing
  full_name: Zhang, Jing
  last_name: Zhang
- first_name: Vassilena
  full_name: Gaykova, Vassilena
  last_name: Gaykova
- first_name: York
  full_name: Stierhof, York-Dieter
  last_name: Stierhof
- first_name: Petre
  full_name: Dobrev, Petre I
  last_name: Dobrev
- first_name: Kateřina
  full_name: Schwarzerová, Kateřina
  last_name: Schwarzerová
- first_name: Jakub
  full_name: Rolčík, Jakub
  last_name: Rolčík
- first_name: Daniela
  full_name: Seifertová, Daniela
  last_name: Seifertová
- first_name: Christian
  full_name: Luschnig, Christian
  last_name: Luschnig
- first_name: Eva
  full_name: Eva Benková
  id: 38F4F166-F248-11E8-B48F-1D18A9856A87
  last_name: Benková
  orcid: 0000-0002-8510-9739
- first_name: Eva
  full_name: Zažímalová, Eva
  last_name: Zažímalová
- first_name: Markus
  full_name: Geisler, Markus
  last_name: Geisler
- first_name: Jirí
  full_name: Jirí Friml
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Mravec J, Skůpa P, Bailly A, et al. Subcellular homeostasis of phytohormone
    auxin is mediated by the ER localized PIN5 transporter. <i>Nature</i>. 2009;459(7250):1136-1140.
    doi:<a href="https://doi.org/10.1038/nature08066">10.1038/nature08066</a>
  apa: Mravec, J., Skůpa, P., Bailly, A., Hoyerová, K., Křeček, P., Bielach, A., …
    Friml, J. (2009). Subcellular homeostasis of phytohormone auxin is mediated by
    the ER localized PIN5 transporter. <i>Nature</i>. Nature Publishing Group. <a
    href="https://doi.org/10.1038/nature08066">https://doi.org/10.1038/nature08066</a>
  chicago: Mravec, Jozef, Petr Skůpa, Aurélien Bailly, Klára Hoyerová, Pavel Křeček,
    Agnieszka Bielach, Jan Petrášek, et al. “Subcellular Homeostasis of Phytohormone
    Auxin Is Mediated by the ER Localized PIN5 Transporter.” <i>Nature</i>. Nature
    Publishing Group, 2009. <a href="https://doi.org/10.1038/nature08066">https://doi.org/10.1038/nature08066</a>.
  ieee: J. Mravec <i>et al.</i>, “Subcellular homeostasis of phytohormone auxin is
    mediated by the ER localized PIN5 transporter,” <i>Nature</i>, vol. 459, no. 7250.
    Nature Publishing Group, pp. 1136–1140, 2009.
  ista: Mravec J, Skůpa P, Bailly A, Hoyerová K, Křeček P, Bielach A, Petrášek J,
    Zhang J, Gaykova V, Stierhof Y, Dobrev P, Schwarzerová K, Rolčík J, Seifertová
    D, Luschnig C, Benková E, Zažímalová E, Geisler M, Friml J. 2009. Subcellular
    homeostasis of phytohormone auxin is mediated by the ER localized PIN5 transporter.
    Nature. 459(7250), 1136–1140.
  mla: Mravec, Jozef, et al. “Subcellular Homeostasis of Phytohormone Auxin Is Mediated
    by the ER Localized PIN5 Transporter.” <i>Nature</i>, vol. 459, no. 7250, Nature
    Publishing Group, 2009, pp. 1136–40, doi:<a href="https://doi.org/10.1038/nature08066">10.1038/nature08066</a>.
  short: J. Mravec, P. Skůpa, A. Bailly, K. Hoyerová, P. Křeček, A. Bielach, J. Petrášek,
    J. Zhang, V. Gaykova, Y. Stierhof, P. Dobrev, K. Schwarzerová, J. Rolčík, D. Seifertová,
    C. Luschnig, E. Benková, E. Zažímalová, M. Geisler, J. Friml, Nature 459 (2009)
    1136–1140.
date_created: 2018-12-11T12:01:07Z
date_published: 2009-06-25T00:00:00Z
date_updated: 2021-01-12T07:40:45Z
day: '25'
doi: 10.1038/nature08066
extern: 1
intvolume: '       459'
issue: '7250'
month: '06'
page: 1136 - 1140
publication: Nature
publication_status: published
publisher: Nature Publishing Group
publist_id: '3645'
quality_controlled: 0
status: public
title: Subcellular homeostasis of phytohormone auxin is mediated by the ER localized
  PIN5 transporter
type: journal_article
volume: 459
year: '2009'
...
---
_id: '3059'
abstract:
- lang: eng
  text: The phytohormone auxin plays a major role in embryonic and postembryonic plant
    development. The temporal and spatial distribution of auxin largely depends on
    the subcellular polar localization of members of the PIN-FORMED (PIN) auxin efflux
    carrier family. The Ser/Thr protein kinase PINOID (PID) catalyzes PIN phosphorylation
    and crucially contributes to the regulation of apical-basal PIN polarity. The
    GTP exchange factor on ADP-ribosylation factors (ARF-GEF), GNOM preferentially
    mediates PIN recycling at the basal side of the cell. Interference with GNOM activity
    leads to dynamic PIN transcytosis between different sides of the cell. Our genetic,
    pharmacological, and cell biological approaches illustrate that PID and GNOM influence
    PIN polarity and plant development in an antagonistic manner and that the PID-dependent
    PIN phosphorylation results in GNOM-independent polar PIN targeting. The data
    suggest that PID and the protein phosphatase 2A not only regulate the static PIN
    polarity, but also act antagonistically on the rate of GNOM-dependent polar PIN
    transcytosis. We propose a model that includes PID-dependent PIN phosphorylation
    at the plasma membrane and the subsequent sorting of PIN proteins to a GNOM-independent
    pathway for polarity alterations during developmental processes, such as lateral
    root formation and leaf vasculature development.
author:
- first_name: Jürgen
  full_name: Kleine-Vehn, Jürgen
  last_name: Kleine Vehn
- first_name: Fang
  full_name: Huang, Fang
  last_name: Huang
- first_name: Satoshi
  full_name: Naramoto, Satoshi
  last_name: Naramoto
- first_name: Jing
  full_name: Zhang, Jing
  last_name: Zhang
- first_name: Marta
  full_name: Michniewicz, Marta
  last_name: Michniewicz
- first_name: Remko
  full_name: Offringa, Remko
  last_name: Offringa
- first_name: Jirí
  full_name: Jirí Friml
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Kleine Vehn J, Huang F, Naramoto S, et al. PIN auxin efflux carrier polarity
    is regulated by PINOID kinase mediated recruitment into GNOM independent trafficking
    in arabidopsis. <i>Plant Cell</i>. 2009;21(12):3839-3849. doi:<a href="https://doi.org/10.1105/tpc.109.071639">10.1105/tpc.109.071639</a>
  apa: Kleine Vehn, J., Huang, F., Naramoto, S., Zhang, J., Michniewicz, M., Offringa,
    R., &#38; Friml, J. (2009). PIN auxin efflux carrier polarity is regulated by
    PINOID kinase mediated recruitment into GNOM independent trafficking in arabidopsis.
    <i>Plant Cell</i>. American Society of Plant Biologists. <a href="https://doi.org/10.1105/tpc.109.071639">https://doi.org/10.1105/tpc.109.071639</a>
  chicago: Kleine Vehn, Jürgen, Fang Huang, Satoshi Naramoto, Jing Zhang, Marta Michniewicz,
    Remko Offringa, and Jiří Friml. “PIN Auxin Efflux Carrier Polarity Is Regulated
    by PINOID Kinase Mediated Recruitment into GNOM Independent Trafficking in Arabidopsis.”
    <i>Plant Cell</i>. American Society of Plant Biologists, 2009. <a href="https://doi.org/10.1105/tpc.109.071639">https://doi.org/10.1105/tpc.109.071639</a>.
  ieee: J. Kleine Vehn <i>et al.</i>, “PIN auxin efflux carrier polarity is regulated
    by PINOID kinase mediated recruitment into GNOM independent trafficking in arabidopsis,”
    <i>Plant Cell</i>, vol. 21, no. 12. American Society of Plant Biologists, pp.
    3839–3849, 2009.
  ista: Kleine Vehn J, Huang F, Naramoto S, Zhang J, Michniewicz M, Offringa R, Friml
    J. 2009. PIN auxin efflux carrier polarity is regulated by PINOID kinase mediated
    recruitment into GNOM independent trafficking in arabidopsis. Plant Cell. 21(12),
    3839–3849.
  mla: Kleine Vehn, Jürgen, et al. “PIN Auxin Efflux Carrier Polarity Is Regulated
    by PINOID Kinase Mediated Recruitment into GNOM Independent Trafficking in Arabidopsis.”
    <i>Plant Cell</i>, vol. 21, no. 12, American Society of Plant Biologists, 2009,
    pp. 3839–49, doi:<a href="https://doi.org/10.1105/tpc.109.071639">10.1105/tpc.109.071639</a>.
  short: J. Kleine Vehn, F. Huang, S. Naramoto, J. Zhang, M. Michniewicz, R. Offringa,
    J. Friml, Plant Cell 21 (2009) 3839–3849.
date_created: 2018-12-11T12:01:07Z
date_published: 2009-12-01T00:00:00Z
date_updated: 2021-01-12T07:40:45Z
day: '01'
doi: 10.1105/tpc.109.071639
extern: 1
intvolume: '        21'
issue: '12'
month: '12'
page: 3839 - 3849
publication: Plant Cell
publication_status: published
publisher: American Society of Plant Biologists
publist_id: '3643'
quality_controlled: 0
status: public
title: PIN auxin efflux carrier polarity is regulated by PINOID kinase mediated recruitment
  into GNOM independent trafficking in arabidopsis
type: journal_article
volume: 21
year: '2009'
...
---
_id: '3060'
article_type: letter_note
author:
- first_name: Karin
  full_name: Schumacher, Karin
  last_name: Schumacher
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Schumacher K, Friml J. Cell biology. <i>Current Opinion in Plant Biology</i>.
    2009;12(6):651-652. doi:<a href="https://doi.org/10.1016/j.pbi.2009.10.009">10.1016/j.pbi.2009.10.009</a>
  apa: Schumacher, K., &#38; Friml, J. (2009). Cell biology. <i>Current Opinion in
    Plant Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.pbi.2009.10.009">https://doi.org/10.1016/j.pbi.2009.10.009</a>
  chicago: Schumacher, Karin, and Jiří Friml. “Cell Biology.” <i>Current Opinion in
    Plant Biology</i>. Elsevier, 2009. <a href="https://doi.org/10.1016/j.pbi.2009.10.009">https://doi.org/10.1016/j.pbi.2009.10.009</a>.
  ieee: K. Schumacher and J. Friml, “Cell biology,” <i>Current Opinion in Plant Biology</i>,
    vol. 12, no. 6. Elsevier, pp. 651–652, 2009.
  ista: Schumacher K, Friml J. 2009. Cell biology. Current Opinion in Plant Biology.
    12(6), 651–652.
  mla: Schumacher, Karin, and Jiří Friml. “Cell Biology.” <i>Current Opinion in Plant
    Biology</i>, vol. 12, no. 6, Elsevier, 2009, pp. 651–52, doi:<a href="https://doi.org/10.1016/j.pbi.2009.10.009">10.1016/j.pbi.2009.10.009</a>.
  short: K. Schumacher, J. Friml, Current Opinion in Plant Biology 12 (2009) 651–652.
date_created: 2018-12-11T12:01:08Z
date_published: 2009-12-01T00:00:00Z
date_updated: 2021-01-12T07:40:46Z
day: '01'
doi: 10.1016/j.pbi.2009.10.009
extern: '1'
intvolume: '        12'
issue: '6'
language:
- iso: eng
month: '12'
oa_version: None
page: 651 - 652
publication: Current Opinion in Plant Biology
publication_status: published
publisher: Elsevier
publist_id: '3641'
quality_controlled: '1'
status: public
title: Cell biology
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2009'
...
---
_id: '3061'
abstract:
- lang: eng
  text: The PIN-FORMED (PIN) proteins are secondary transporters acting in the efflux
    of the plant signal molecule auxin from cells. They are asymmetrically localized
    within cells and their polarity determines the directionality of intercellular
    auxin flow. PIN genes are found exclusively in the genomes of multicellular plants
    and play an important role in regulating asymmetric auxin distribution in multiple
    developmental processes, including embryogenesis, organogenesis, tissue differentiation
    and tropic responses. All PIN proteins have a similar structure with amino- and
    carboxy-terminal hydrophobic, membrane-spanning domains separated by a central
    hydrophilic domain. The structure of the hydrophobic domains is well conserved.
    The hydrophilic domain is more divergent and it determines eight groups within
    the protein family. The activity of PIN proteins is regulated at multiple levels,
    including transcription, protein stability, subcellular localization and transport
    activity. Different endogenous and environmental signals can modulate PIN activity
    and thus modulate auxin-distribution-dependent development. A large group of PIN
    proteins, including the most ancient members known from mosses, localize to the
    endoplasmic reticulum and they regulate the subcellular compartmentalization of
    auxin and thus auxin metabolism. Further work is needed to establish the physiological
    importance of this unexpected mode of auxin homeostasis regulation. Furthermore,
    the evolution of PIN-based transport, PIN protein structure and more detailed
    biochemical characterization of the transport function are important topics for
    further studies.
author:
- first_name: Pavel
  full_name: Křeček, Pavel
  last_name: Křeček
- first_name: Petr
  full_name: Skůpa, Petr
  last_name: Skůpa
- first_name: Jiří
  full_name: Libus, Jiří
  last_name: Libus
- first_name: Satoshi
  full_name: Naramoto, Satoshi
  last_name: Naramoto
- first_name: Ricardo
  full_name: Tejos, Ricardo
  last_name: Tejos
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Eva
  full_name: Zažímalová, Eva
  last_name: Zažímalová
citation:
  ama: Křeček P, Skůpa P, Libus J, et al. The PIN-FORMED (PIN) protein family of auxin
    transporters. <i>Genome Biology</i>. 2009;10(12). doi:<a href="https://doi.org/10.1186/gb-2009-10-12-249">10.1186/gb-2009-10-12-249</a>
  apa: Křeček, P., Skůpa, P., Libus, J., Naramoto, S., Tejos, R., Friml, J., &#38;
    Zažímalová, E. (2009). The PIN-FORMED (PIN) protein family of auxin transporters.
    <i>Genome Biology</i>. BioMed Central. <a href="https://doi.org/10.1186/gb-2009-10-12-249">https://doi.org/10.1186/gb-2009-10-12-249</a>
  chicago: Křeček, Pavel, Petr Skůpa, Jiří Libus, Satoshi Naramoto, Ricardo Tejos,
    Jiří Friml, and Eva Zažímalová. “The PIN-FORMED (PIN) Protein Family of Auxin
    Transporters.” <i>Genome Biology</i>. BioMed Central, 2009. <a href="https://doi.org/10.1186/gb-2009-10-12-249">https://doi.org/10.1186/gb-2009-10-12-249</a>.
  ieee: P. Křeček <i>et al.</i>, “The PIN-FORMED (PIN) protein family of auxin transporters,”
    <i>Genome Biology</i>, vol. 10, no. 12. BioMed Central, 2009.
  ista: Křeček P, Skůpa P, Libus J, Naramoto S, Tejos R, Friml J, Zažímalová E. 2009.
    The PIN-FORMED (PIN) protein family of auxin transporters. Genome Biology. 10(12).
  mla: Křeček, Pavel, et al. “The PIN-FORMED (PIN) Protein Family of Auxin Transporters.”
    <i>Genome Biology</i>, vol. 10, no. 12, BioMed Central, 2009, doi:<a href="https://doi.org/10.1186/gb-2009-10-12-249">10.1186/gb-2009-10-12-249</a>.
  short: P. Křeček, P. Skůpa, J. Libus, S. Naramoto, R. Tejos, J. Friml, E. Zažímalová,
    Genome Biology 10 (2009).
date_created: 2018-12-11T12:01:08Z
date_published: 2009-12-29T00:00:00Z
date_updated: 2021-01-12T07:40:46Z
day: '29'
doi: 10.1186/gb-2009-10-12-249
extern: '1'
external_id:
  pmid:
  - '20053306'
intvolume: '        10'
issue: '12'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2812941/
month: '12'
oa: 1
oa_version: Published Version
pmid: 1
publication: Genome Biology
publication_status: published
publisher: BioMed Central
publist_id: '3640'
quality_controlled: '1'
status: public
title: The PIN-FORMED (PIN) protein family of auxin transporters
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 10
year: '2009'
...
---
_id: '12654'
abstract:
- lang: eng
  text: 'We investigate the transferability of an enhanced temperature-index melt
    model that was developed and tested on Haut Glacier d’Arolla, Switzerland, in
    the 2001 season. The model’s empirical parameters (temperature factor, TF, and
    shortwave radiation factor, SRF) are recalibrated for: (1) other locations on
    Haut Glacier d’Arolla; (2) subperiods of distinct meteorological conditions; (3)
    different years on Haut Glacier d’Arolla; and (4) other glaciers in different
    years. The model parameters are optimized against simulations of an energy-balance
    model validated against ablation observations. Results are compared with those
    obtained with the original parameters. The model works very well when applied
    to other sites, seasons and glaciers, with the exception of overcast conditions.
    Differences are due to underestimation of high melt rates. The parameter values
    are associated with the prevailing energy-balance conditions, showing that high
    SRF are obtained on clear-sky days, whereas higher TF are typical of locations
    where glacier winds prevail and turbulent fluxes are high. We also provide a range
    of parameters clearly associated with the site’s location and its meteorological
    characteristics that could help to assign parameter values to sites where few
    data are available.'
article_processing_charge: No
article_type: original
author:
- first_name: Marco
  full_name: Carenzo, Marco
  last_name: Carenzo
- first_name: Francesca
  full_name: Pellicciotti, Francesca
  id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
  last_name: Pellicciotti
  orcid: 0000-0002-5554-8087
- first_name: Stefan
  full_name: Rimkus, Stefan
  last_name: Rimkus
- first_name: Paolo
  full_name: Burlando, Paolo
  last_name: Burlando
citation:
  ama: Carenzo M, Pellicciotti F, Rimkus S, Burlando P. Assessing the transferability
    and robustness of an enhanced temperature-index glacier-melt model. <i>Journal
    of Glaciology</i>. 2009;55(190):258-274. doi:<a href="https://doi.org/10.3189/002214309788608804">10.3189/002214309788608804</a>
  apa: Carenzo, M., Pellicciotti, F., Rimkus, S., &#38; Burlando, P. (2009). Assessing
    the transferability and robustness of an enhanced temperature-index glacier-melt
    model. <i>Journal of Glaciology</i>. Cambridge University Press. <a href="https://doi.org/10.3189/002214309788608804">https://doi.org/10.3189/002214309788608804</a>
  chicago: Carenzo, Marco, Francesca Pellicciotti, Stefan Rimkus, and Paolo Burlando.
    “Assessing the Transferability and Robustness of an Enhanced Temperature-Index
    Glacier-Melt Model.” <i>Journal of Glaciology</i>. Cambridge University Press,
    2009. <a href="https://doi.org/10.3189/002214309788608804">https://doi.org/10.3189/002214309788608804</a>.
  ieee: M. Carenzo, F. Pellicciotti, S. Rimkus, and P. Burlando, “Assessing the transferability
    and robustness of an enhanced temperature-index glacier-melt model,” <i>Journal
    of Glaciology</i>, vol. 55, no. 190. Cambridge University Press, pp. 258–274,
    2009.
  ista: Carenzo M, Pellicciotti F, Rimkus S, Burlando P. 2009. Assessing the transferability
    and robustness of an enhanced temperature-index glacier-melt model. Journal of
    Glaciology. 55(190), 258–274.
  mla: Carenzo, Marco, et al. “Assessing the Transferability and Robustness of an
    Enhanced Temperature-Index Glacier-Melt Model.” <i>Journal of Glaciology</i>,
    vol. 55, no. 190, Cambridge University Press, 2009, pp. 258–74, doi:<a href="https://doi.org/10.3189/002214309788608804">10.3189/002214309788608804</a>.
  short: M. Carenzo, F. Pellicciotti, S. Rimkus, P. Burlando, Journal of Glaciology
    55 (2009) 258–274.
date_created: 2023-02-20T08:18:34Z
date_published: 2009-03-01T00:00:00Z
date_updated: 2024-10-14T12:00:39Z
day: '01'
doi: 10.3189/002214309788608804
extern: '1'
intvolume: '        55'
issue: '190'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.3189/002214309788608804
month: '03'
oa: 1
oa_version: Published Version
page: 258-274
publication: Journal of Glaciology
publication_identifier:
  eissn:
  - 1727-5652
  issn:
  - 0022-1430
publication_status: published
publisher: Cambridge University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Assessing the transferability and robustness of an enhanced temperature-index
  glacier-melt model
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 55
year: '2009'
...
---
_id: '12655'
abstract:
- lang: eng
  text: We discuss the inclusion of the subsurface heat-conduction flux into the calculation
    of the energy balance and ablation at the glacier–atmosphere interface. Data from
    automatic weather stations are used to force an energy-balance model at several
    locations on alpine glaciers and at one site in the dry Andes of central Chile.
    The heat-conduction flux is computed using a two-layer scheme, assuming that 36%
    of the net shortwave radiation is absorbed by the surface layer and that the rest
    penetrates into the snowpack. We compare simulations conducted with and without
    subsurface heat flux. Results show that assuming a surface temperature of zero
    degrees leads to a larger overestimation of melt at the sites in the accumulation
    area (10.4–13.3%) than in the ablation area (0.5–2.8%), due to lower air temperatures
    and the presence of snow. The difference between simulations with and without
    heat conduction is also high at the beginning and end of the ablation season (up
    to 29% for the first 15 days of the season), when air temperatures are lower and
    snow covers the glacier surface, while they are of little importance during periods
    of sustained melt at all the locations investigated.
article_processing_charge: No
article_type: original
author:
- first_name: Francesca
  full_name: Pellicciotti, Francesca
  id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
  last_name: Pellicciotti
  orcid: 0000-0002-5554-8087
- first_name: Marco
  full_name: Carenzo, Marco
  last_name: Carenzo
- first_name: Jakob
  full_name: Helbing, Jakob
  last_name: Helbing
- first_name: Stefan
  full_name: Rimkus, Stefan
  last_name: Rimkus
- first_name: Paolo
  full_name: Burlando, Paolo
  last_name: Burlando
citation:
  ama: Pellicciotti F, Carenzo M, Helbing J, Rimkus S, Burlando P. On the role of
    subsurface heat conduction in glacier energy-balance modelling. <i>Annals of Glaciology</i>.
    2009;50(50):16-24. doi:<a href="https://doi.org/10.3189/172756409787769555">10.3189/172756409787769555</a>
  apa: Pellicciotti, F., Carenzo, M., Helbing, J., Rimkus, S., &#38; Burlando, P.
    (2009). On the role of subsurface heat conduction in glacier energy-balance modelling.
    <i>Annals of Glaciology</i>. International Glaciological Society. <a href="https://doi.org/10.3189/172756409787769555">https://doi.org/10.3189/172756409787769555</a>
  chicago: Pellicciotti, Francesca, Marco Carenzo, Jakob Helbing, Stefan Rimkus, and
    Paolo Burlando. “On the Role of Subsurface Heat Conduction in Glacier Energy-Balance
    Modelling.” <i>Annals of Glaciology</i>. International Glaciological Society,
    2009. <a href="https://doi.org/10.3189/172756409787769555">https://doi.org/10.3189/172756409787769555</a>.
  ieee: F. Pellicciotti, M. Carenzo, J. Helbing, S. Rimkus, and P. Burlando, “On the
    role of subsurface heat conduction in glacier energy-balance modelling,” <i>Annals
    of Glaciology</i>, vol. 50, no. 50. International Glaciological Society, pp. 16–24,
    2009.
  ista: Pellicciotti F, Carenzo M, Helbing J, Rimkus S, Burlando P. 2009. On the role
    of subsurface heat conduction in glacier energy-balance modelling. Annals of Glaciology.
    50(50), 16–24.
  mla: Pellicciotti, Francesca, et al. “On the Role of Subsurface Heat Conduction
    in Glacier Energy-Balance Modelling.” <i>Annals of Glaciology</i>, vol. 50, no.
    50, International Glaciological Society, 2009, pp. 16–24, doi:<a href="https://doi.org/10.3189/172756409787769555">10.3189/172756409787769555</a>.
  short: F. Pellicciotti, M. Carenzo, J. Helbing, S. Rimkus, P. Burlando, Annals of
    Glaciology 50 (2009) 16–24.
date_created: 2023-02-20T08:18:40Z
date_published: 2009-01-01T00:00:00Z
date_updated: 2024-10-14T12:00:29Z
day: '01'
doi: 10.3189/172756409787769555
extern: '1'
intvolume: '        50'
issue: '50'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.3189/172756409787769555
month: '01'
oa: 1
oa_version: Published Version
page: 16-24
publication: Annals of Glaciology
publication_identifier:
  eissn:
  - 1727-5644
  issn:
  - 0260-3055
publication_status: published
publisher: International Glaciological Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: On the role of subsurface heat conduction in glacier energy-balance modelling
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 50
year: '2009'
...
---
_id: '1302'
abstract:
- lang: eng
  text: 'The nervous system of seeing animals derives information about optic flow
    in two subsequent steps. First, local motion vectors are calculated from moving
    retinal images, and second, the spatial distribution of these vectors is analyzed
    on the dendrites of large downstream neurons. In dipteran flies, this second step
    relies on a set of motion-sensitive lobula plate tangential cells (LPTCs), which
    have been studied in great detail in large fly species. Yet, studies on neurons
    that convey information to LPTCs and neuroanatomical investigations that enable
    a mechanistic understanding of the underlying dendritic computations in LPTCs
    are rare. We investigated the subcellular distribution of nicotinic acetylcholine
    receptors (nAChRs) on two sets of LPTCs: vertical system (VS) and horizontal system
    (HS) cells in Drosophila melanogaster. In this paper, we describe that both cell
    types express Dα7-type nAChR subunits specifically on higher order dendritic branches,
    similar to the expression of gamma aminobutyric acid (GABA) receptors. These findings
    support a model in which directional selectivity of LPTCs is achieved by the dendritic
    integration of excitatory, cholinergic, and inhibitory GABA-ergic input from local
    motion detectors with opposite preferred direction. Nonetheless, whole-cell recordings
    in mutant flies without Dα7 nAChRs revealed that direction selectivity of VS and
    HS cells is largely retained. In addition, mutant LPTCs were responsive to acetylcholine
    and remaining nAChR receptors were labeled by α-bungarotoxin. These results in
    LPTCs with genetically manipulated excitatory input synapses suggest a robust
    cellular implementation of dendritic processing that warrants direction selectivity.
    The underlying mechanism that ensures appropriate nAChR-mediated synaptic currents
    and the functional implications of separate sets or heteromultimeric nAChRs can
    now be addressed in this system.'
author:
- first_name: Shamprasad
  full_name: Raghu, Shamprasad V
  last_name: Raghu
- first_name: Maximilian A
  full_name: Maximilian Jösch
  id: 2BD278E6-F248-11E8-B48F-1D18A9856A87
  last_name: Jösch
  orcid: 0000-0002-3937-1330
- first_name: Stephan
  full_name: Sigrist, Stephan J
  last_name: Sigrist
- first_name: Alexander
  full_name: Borst, Alexander
  last_name: Borst
- first_name: Dierk
  full_name: Reiff, Dierk F
  last_name: Reiff
citation:
  ama: 'Raghu S, Jösch MA, Sigrist S, Borst A, Reiff D. Synaptic organization of lobula
    plate tangential cells in Drosophila: Dα7 cholinergic receptors. <i>Journal of
    Neurogenetics</i>. 2009;23(1-2):200-209. doi:<a href="https://doi.org/10.1080/01677060802471684">10.1080/01677060802471684</a>'
  apa: 'Raghu, S., Jösch, M. A., Sigrist, S., Borst, A., &#38; Reiff, D. (2009). Synaptic
    organization of lobula plate tangential cells in Drosophila: Dα7 cholinergic receptors.
    <i>Journal of Neurogenetics</i>. Informa Healthcare. <a href="https://doi.org/10.1080/01677060802471684">https://doi.org/10.1080/01677060802471684</a>'
  chicago: 'Raghu, Shamprasad, Maximilian A Jösch, Stephan Sigrist, Alexander Borst,
    and Dierk Reiff. “Synaptic Organization of Lobula Plate Tangential Cells in Drosophila:
    Dα7 Cholinergic Receptors.” <i>Journal of Neurogenetics</i>. Informa Healthcare,
    2009. <a href="https://doi.org/10.1080/01677060802471684">https://doi.org/10.1080/01677060802471684</a>.'
  ieee: 'S. Raghu, M. A. Jösch, S. Sigrist, A. Borst, and D. Reiff, “Synaptic organization
    of lobula plate tangential cells in Drosophila: Dα7 cholinergic receptors,” <i>Journal
    of Neurogenetics</i>, vol. 23, no. 1–2. Informa Healthcare, pp. 200–209, 2009.'
  ista: 'Raghu S, Jösch MA, Sigrist S, Borst A, Reiff D. 2009. Synaptic organization
    of lobula plate tangential cells in Drosophila: Dα7 cholinergic receptors. Journal
    of Neurogenetics. 23(1–2), 200–209.'
  mla: 'Raghu, Shamprasad, et al. “Synaptic Organization of Lobula Plate Tangential
    Cells in Drosophila: Dα7 Cholinergic Receptors.” <i>Journal of Neurogenetics</i>,
    vol. 23, no. 1–2, Informa Healthcare, 2009, pp. 200–09, doi:<a href="https://doi.org/10.1080/01677060802471684">10.1080/01677060802471684</a>.'
  short: S. Raghu, M.A. Jösch, S. Sigrist, A. Borst, D. Reiff, Journal of Neurogenetics
    23 (2009) 200–209.
date_created: 2018-12-11T11:51:15Z
date_published: 2009-03-01T00:00:00Z
date_updated: 2021-01-12T06:49:44Z
day: '01'
doi: 10.1080/01677060802471684
extern: 1
intvolume: '        23'
issue: 1-2
month: '03'
page: 200 - 209
publication: Journal of Neurogenetics
publication_status: published
publisher: Informa Healthcare
publist_id: '5972'
quality_controlled: 0
status: public
title: 'Synaptic organization of lobula plate tangential cells in Drosophila: Dα7
  cholinergic receptors'
type: journal_article
volume: 23
year: '2009'
...
---
_id: '2094'
abstract:
- lang: eng
  text: 'This paper introduces a data-driven representation and modeling technique
    for simulating non-linear heterogeneous soft tissue. It simplifies the construction
    of convincing deformable models by avoiding complex selection and tuning of physical
    material parameters, yet retaining the richness of non-linear heterogeneous behavior.
    We acquire a set of example deformations of a real object, and represent each
    of them as a spatially varying stress-strain relationship in a finite-element
    model. We then model the material by non-linear interpolation of these stress-strain
    relationships in strain-space. Our method relies on a simple-to-build capture
    system and an efficient run-time simulation algorithm based on incremental loading,
    making it suitable for interactive computer graphics applications. We present
    the results of our approach for several non-linear materials and biological soft
    tissue, with accurate agreement of our model to the measured data. '
acknowledgement: 'This research was supported by the NCCR Co-Me grant of the Swiss
  National Science Foundation. Moritz Bacher was partially supported by the Initiative
  in Innovative Computing (IIC) and the School of Engineering and Applied Sciences
  (SEAS) at Harvard. '
author:
- first_name: Bernd
  full_name: Bernd Bickel
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
- first_name: Moritz
  full_name: Bac̈her, Moritz
  last_name: Bac̈Her
- first_name: Miguel
  full_name: Otaduy, Miguel A
  last_name: Otaduy
- first_name: Wojciech
  full_name: Matusik, Wojciech
  last_name: Matusik
- first_name: Hanspeter
  full_name: Pfister, Hanspeter
  last_name: Pfister
- first_name: Markus
  full_name: Groß, Markus S
  last_name: Groß
citation:
  ama: 'Bickel B, Bac̈Her M, Otaduy M, Matusik W, Pfister H, Groß M. Capture and modeling
    of non-linear heterogeneous soft tissue. In: Vol 28. ACM; 2009. doi:<a href="https://doi.org/10.1145/1576246.1531395
    ">10.1145/1576246.1531395 </a>'
  apa: Bickel, B., Bac̈Her, M., Otaduy, M., Matusik, W., Pfister, H., &#38; Groß,
    M. (2009). Capture and modeling of non-linear heterogeneous soft tissue (Vol.
    28). Presented at the ACM SIGGRAPH, ACM. <a href="https://doi.org/10.1145/1576246.1531395
    ">https://doi.org/10.1145/1576246.1531395 </a>
  chicago: Bickel, Bernd, Moritz Bac̈Her, Miguel Otaduy, Wojciech Matusik, Hanspeter
    Pfister, and Markus Groß. “Capture and Modeling of Non-Linear Heterogeneous Soft
    Tissue,” Vol. 28. ACM, 2009. <a href="https://doi.org/10.1145/1576246.1531395
    ">https://doi.org/10.1145/1576246.1531395 </a>.
  ieee: B. Bickel, M. Bac̈Her, M. Otaduy, W. Matusik, H. Pfister, and M. Groß, “Capture
    and modeling of non-linear heterogeneous soft tissue,” presented at the ACM SIGGRAPH,
    2009, vol. 28, no. 3.
  ista: Bickel B, Bac̈Her M, Otaduy M, Matusik W, Pfister H, Groß M. 2009. Capture
    and modeling of non-linear heterogeneous soft tissue. ACM SIGGRAPH vol. 28.
  mla: Bickel, Bernd, et al. <i>Capture and Modeling of Non-Linear Heterogeneous Soft
    Tissue</i>. Vol. 28, no. 3, ACM, 2009, doi:<a href="https://doi.org/10.1145/1576246.1531395
    ">10.1145/1576246.1531395 </a>.
  short: B. Bickel, M. Bac̈Her, M. Otaduy, W. Matusik, H. Pfister, M. Groß, in:, ACM,
    2009.
conference:
  name: ACM SIGGRAPH
date_created: 2018-12-11T11:55:40Z
date_published: 2009-07-27T00:00:00Z
date_updated: 2019-04-26T07:22:08Z
day: '27'
doi: '10.1145/1576246.1531395 '
extern: 1
intvolume: '        28'
issue: '3'
month: '07'
publication_status: published
publisher: ACM
publist_id: '4940'
quality_controlled: 0
status: public
title: Capture and modeling of non-linear heterogeneous soft tissue
type: conference
volume: 28
year: '2009'
...
---
OA_type: closed access
_id: '21150'
abstract:
- lang: eng
  text: The crystal structure of d(CACACG)·d(CGTGTG) was solved to a resolution of
    2.05 Å in space group P21. The duplex assumes the left-handed Z-DNA structure.
    The presence of two A·T base pairs in the hexamer does not greatly affect the
    conformation. The most significant changes compared with the regular structure
    of Z-DNA are in the values of twist in the central portion of the helix. This
    variation, as well as others in the values of roll, inclination etc., follow the
    pattern observed previously in the structure of d(CGCACG)·d(CGTGCG).
article_processing_charge: No
article_type: original
author:
- first_name: S.
  full_name: Venkadesh, S.
  last_name: Venkadesh
- first_name: Pradeep K
  full_name: Mandal, Pradeep K
  id: 6a3def15-d4b4-11ef-9fa9-a24c1f545ec3
  last_name: Mandal
  orcid: 0000-0001-5996-956X
- first_name: N.
  full_name: Gautham, N.
  last_name: Gautham
citation:
  ama: Venkadesh S, Mandal PK, Gautham N. The structure of d(CACACG)·d(CGTGTG). <i>Acta
    Crystallographica Section F Structural Biology Communications</i>. 2009;65(1):8-13.
    doi:<a href="https://doi.org/10.1107/s1744309108037706">10.1107/s1744309108037706</a>
  apa: Venkadesh, S., Mandal, P. K., &#38; Gautham, N. (2009). The structure of d(CACACG)·d(CGTGTG).
    <i>Acta Crystallographica Section F Structural Biology Communications</i>. International
    Union of Crystallography. <a href="https://doi.org/10.1107/s1744309108037706">https://doi.org/10.1107/s1744309108037706</a>
  chicago: Venkadesh, S., Pradeep K Mandal, and N. Gautham. “The Structure of d(CACACG)·d(CGTGTG).”
    <i>Acta Crystallographica Section F Structural Biology Communications</i>. International
    Union of Crystallography, 2009. <a href="https://doi.org/10.1107/s1744309108037706">https://doi.org/10.1107/s1744309108037706</a>.
  ieee: S. Venkadesh, P. K. Mandal, and N. Gautham, “The structure of d(CACACG)·d(CGTGTG),”
    <i>Acta Crystallographica Section F Structural Biology Communications</i>, vol.
    65, no. 1. International Union of Crystallography, pp. 8–13, 2009.
  ista: Venkadesh S, Mandal PK, Gautham N. 2009. The structure of d(CACACG)·d(CGTGTG).
    Acta Crystallographica Section F Structural Biology Communications. 65(1), 8–13.
  mla: Venkadesh, S., et al. “The Structure of d(CACACG)·d(CGTGTG).” <i>Acta Crystallographica
    Section F Structural Biology Communications</i>, vol. 65, no. 1, International
    Union of Crystallography, 2009, pp. 8–13, doi:<a href="https://doi.org/10.1107/s1744309108037706">10.1107/s1744309108037706</a>.
  short: S. Venkadesh, P.K. Mandal, N. Gautham, Acta Crystallographica Section F Structural
    Biology Communications 65 (2009) 8–13.
date_created: 2026-02-06T12:06:24Z
date_published: 2009-01-01T00:00:00Z
date_updated: 2026-02-23T08:54:20Z
day: '01'
doi: 10.1107/s1744309108037706
extern: '1'
has_accepted_license: '1'
intvolume: '        65'
issue: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: 8-13
publication: Acta Crystallographica Section F Structural Biology Communications
publication_identifier:
  issn:
  - 1744-3091
publication_status: published
publisher: International Union of Crystallography
quality_controlled: '1'
status: public
title: The structure of d(CACACG)·d(CGTGTG)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 65
year: '2009'
...
---
_id: '2119'
abstract:
- lang: eng
  text: 'Let (E, H, μ) be an abstract Wiener space and let DV : = V D, where D denotes
    the Malliavin derivative and V is a closed and densely defined operator from H
    into another Hilbert space under(H, {combining low line}). Given a bounded operator
    B on under(H, {combining low line}), coercive on the range over(R (V), -), we
    consider the operators A : = V* B V in H and under(A, {combining low line}) :
    = V V* B in under(H, {combining low line}), as well as the realisations of the
    operators L : = DV* B DV and under(L, {combining low line}) : = DV DV* B in Lp
    (E, μ) and Lp (E, μ ; under(H, {combining low line})) respectively, where 1 &lt;
    p &lt; ∞. Our main result asserts that the following four assertions are equivalent:
    (1)D (sqrt(L)) = D (DV) with {norm of matrix} sqrt(L) f {norm of matrix}p {minus
    tilde} {norm of matrix} DV f {norm of matrix}p for f ∈ D (sqrt(L));(2)under(L,
    {combining low line}) admits a bounded H∞-functional calculus on over(R (DV),
    -);(3)D (sqrt(A)) = D (V) with {norm of matrix} sqrt(A) h {norm of matrix} {minus
    tilde} {norm of matrix} V h {norm of matrix} for h ∈ D (sqrt(A));(4)under(A, {combining
    low line}) admits a bounded H∞-functional calculus on over(R (V), -). Moreover,
    if these conditions are satisfied, then D (L) = D (DV2) ∩ D (DA). The equivalence
    (1)-(4) is a non-symmetric generalisation of the classical Meyer inequalities
    of Malliavin calculus (where under(H, {combining low line}) = H, V = I, B = frac(1,
    2) I). A one-sided version of (1)-(4), giving Lp-boundedness of the Riesz transform
    DV / sqrt(L) in terms of a square function estimate, is also obtained. As an application
    let -A generate an analytic C0-contraction semigroup on a Hilbert space H and
    let -L be the Lp-realisation of the generator of its second quantisation. Our
    results imply that two-sided bounds for the Riesz transform of L are equivalent
    with the Kato square root property for A. The boundedness of the Riesz transform
    is used to obtain an Lp-domain characterisation for the operator L.'
author:
- first_name: Jan
  full_name: Jan Maas
  id: 4C5696CE-F248-11E8-B48F-1D18A9856A87
  last_name: Maas
  orcid: 0000-0002-0845-1338
- first_name: Jan
  full_name: van Neerven, Jan M
  last_name: Van Neerven
citation:
  ama: Maas J, Van Neerven J. Boundedness of Riesz transforms for elliptic operators
    on abstract Wiener spaces. <i>Journal of Functional Analysis</i>. 2009;257(8):2410-2475.
    doi:<a href="https://doi.org/10.1016/j.jfa.2009.07.001">10.1016/j.jfa.2009.07.001</a>
  apa: Maas, J., &#38; Van Neerven, J. (2009). Boundedness of Riesz transforms for
    elliptic operators on abstract Wiener spaces. <i>Journal of Functional Analysis</i>.
    Academic Press. <a href="https://doi.org/10.1016/j.jfa.2009.07.001">https://doi.org/10.1016/j.jfa.2009.07.001</a>
  chicago: Maas, Jan, and Jan Van Neerven. “Boundedness of Riesz Transforms for Elliptic
    Operators on Abstract Wiener Spaces.” <i>Journal of Functional Analysis</i>. Academic
    Press, 2009. <a href="https://doi.org/10.1016/j.jfa.2009.07.001">https://doi.org/10.1016/j.jfa.2009.07.001</a>.
  ieee: J. Maas and J. Van Neerven, “Boundedness of Riesz transforms for elliptic
    operators on abstract Wiener spaces,” <i>Journal of Functional Analysis</i>, vol.
    257, no. 8. Academic Press, pp. 2410–2475, 2009.
  ista: Maas J, Van Neerven J. 2009. Boundedness of Riesz transforms for elliptic
    operators on abstract Wiener spaces. Journal of Functional Analysis. 257(8), 2410–2475.
  mla: Maas, Jan, and Jan Van Neerven. “Boundedness of Riesz Transforms for Elliptic
    Operators on Abstract Wiener Spaces.” <i>Journal of Functional Analysis</i>, vol.
    257, no. 8, Academic Press, 2009, pp. 2410–75, doi:<a href="https://doi.org/10.1016/j.jfa.2009.07.001">10.1016/j.jfa.2009.07.001</a>.
  short: J. Maas, J. Van Neerven, Journal of Functional Analysis 257 (2009) 2410–2475.
date_created: 2018-12-11T11:55:49Z
date_published: 2009-10-15T00:00:00Z
date_updated: 2021-01-12T06:55:25Z
day: '15'
doi: 10.1016/j.jfa.2009.07.001
extern: 1
intvolume: '       257'
issue: '8'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/0804.1432
month: '10'
oa: 1
page: 2410 - 2475
publication: Journal of Functional Analysis
publication_status: published
publisher: Academic Press
publist_id: '4913'
quality_controlled: 0
status: public
title: Boundedness of Riesz transforms for elliptic operators on abstract Wiener spaces
type: journal_article
volume: 257
year: '2009'
...
---
_id: '2136'
abstract:
- lang: eng
  text: The local atomic structure of PbTiO3, BaTiO3, and KNbO3 perovskite-type crystals
    and K x Na1 − x NbO3 solid solutions in different phases is investigated using
    the angular dependence of the pre-edge structure of the Ti and Nb K X-ray absorption
    spectra and the EXAFS data. In noncubic phases, a considerable deviation of the
    local structure from the structure determined from diffraction data is observed
    only for the tetragonal phase of the BaTiO3 crystal. It is revealed that, in the
    cubic phase of niobates, the niobium atoms are characterized by significant displacements
    from the centrosymmetric positions along the threefold axes, so that they are
    close in the magnitude and the direction to the displacements in the low-temperatures
    rhombohedral phases.
acknowledgement: This study was supported by the Russian Founda*tion for Basic Research
  (project no. 07*02*00796a).
author:
- first_name: Rostislav
  full_name: Vedrinskiǐ, Rostislav V
  last_name: Vedrinskiǐ
- first_name: V.
  full_name: Kraǐzman, V. L
  last_name: Kraǐzman
- first_name: Mikhail
  full_name: Mikhail Lemeshko
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Elena
  full_name: Nazarenko, Elena S
  last_name: Nazarenko
- first_name: Alexander
  full_name: Novakovich, Alexander A
  last_name: Novakovich
- first_name: Larisa
  full_name: Reznichenko, Larisa A
  last_name: Reznichenko
- first_name: Vladimir
  full_name: Fokin, Vladimir N
  last_name: Fokin
- first_name: Victoria
  full_name: Shuvaeva, Victoria A
  last_name: Shuvaeva
citation:
  ama: 'Vedrinskiǐ R, Kraǐzman V, Lemeshko M, et al. Local atomic structure of niobates
    and titanates from X-ray absorption spectroscopic data. In: Vol 51. Springer;
    2009:1394-1398. doi:<a href="https://doi.org/10.1134/S106378340907018X">10.1134/S106378340907018X</a>'
  apa: 'Vedrinskiǐ, R., Kraǐzman, V., Lemeshko, M., Nazarenko, E., Novakovich, A.,
    Reznichenko, L., … Shuvaeva, V. (2009). Local atomic structure of niobates and
    titanates from X-ray absorption spectroscopic data (Vol. 51, pp. 1394–1398). Presented
    at the CoPoF: 18th All-Russia Conference on Physics of Ferroelectrics (VKS-XVIII),
    Springer. <a href="https://doi.org/10.1134/S106378340907018X">https://doi.org/10.1134/S106378340907018X</a>'
  chicago: Vedrinskiǐ, Rostislav, V. Kraǐzman, Mikhail Lemeshko, Elena Nazarenko,
    Alexander Novakovich, Larisa Reznichenko, Vladimir Fokin, and Victoria Shuvaeva.
    “Local Atomic Structure of Niobates and Titanates from X-Ray Absorption Spectroscopic
    Data,” 51:1394–98. Springer, 2009. <a href="https://doi.org/10.1134/S106378340907018X">https://doi.org/10.1134/S106378340907018X</a>.
  ieee: 'R. Vedrinskiǐ <i>et al.</i>, “Local atomic structure of niobates and titanates
    from X-ray absorption spectroscopic data,” presented at the CoPoF: 18th All-Russia
    Conference on Physics of Ferroelectrics (VKS-XVIII), 2009, vol. 51, no. 7, pp.
    1394–1398.'
  ista: 'Vedrinskiǐ R, Kraǐzman V, Lemeshko M, Nazarenko E, Novakovich A, Reznichenko
    L, Fokin V, Shuvaeva V. 2009. Local atomic structure of niobates and titanates
    from X-ray absorption spectroscopic data. CoPoF: 18th All-Russia Conference on
    Physics of Ferroelectrics (VKS-XVIII) vol. 51, 1394–1398.'
  mla: Vedrinskiǐ, Rostislav, et al. <i>Local Atomic Structure of Niobates and Titanates
    from X-Ray Absorption Spectroscopic Data</i>. Vol. 51, no. 7, Springer, 2009,
    pp. 1394–98, doi:<a href="https://doi.org/10.1134/S106378340907018X">10.1134/S106378340907018X</a>.
  short: R. Vedrinskiǐ, V. Kraǐzman, M. Lemeshko, E. Nazarenko, A. Novakovich, L.
    Reznichenko, V. Fokin, V. Shuvaeva, in:, Springer, 2009, pp. 1394–1398.
conference:
  name: 'CoPoF: 18th All-Russia Conference on Physics of Ferroelectrics (VKS-XVIII)'
date_created: 2018-12-11T11:55:55Z
date_published: 2009-07-12T00:00:00Z
date_updated: 2021-01-12T06:55:31Z
day: '12'
doi: 10.1134/S106378340907018X
extern: 1
intvolume: '        51'
issue: '7'
month: '07'
page: 1394 - 1398
publication_status: published
publisher: Springer
publist_id: '4898'
quality_controlled: 0
status: public
title: Local atomic structure of niobates and titanates from X-ray absorption spectroscopic
  data
type: conference
volume: 51
year: '2009'
...
---
_id: '2137'
abstract:
- lang: eng
  text: Relying on the quantization rule of Raab and Friedrich [Phys. Rev. A (2009)
    in press], we derive simple and accurate formulae for the number of rotational
    states supported by a weakly bound vibrational level of a diatomic molecular ion.
    We also provide analytic estimates of the rotational constants of any such levels
    up to threshold for dissociation and obtain a criterion for determining whether
    a given weakly bound vibrational level is rotationless. The results depend solely
    on the long-range part of the molecular potential.
author:
- first_name: Mikhail
  full_name: Mikhail Lemeshko
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Bretislav
  full_name: Frierich, Bretislav
  last_name: Frierich
citation:
  ama: Lemeshko M, Frierich B. Rotational structure of weakly bound molecular ions.
    <i>Journal of Atomic and Molecular Sciences</i>. 2009;1(1):41-47. doi:<a href="https://doi.org/10.4208/jams.101009.110209a">10.4208/jams.101009.110209a</a>
  apa: Lemeshko, M., &#38; Frierich, B. (2009). Rotational structure of weakly bound
    molecular ions. <i>Journal of Atomic and Molecular Sciences</i>. Global Science
    Press. <a href="https://doi.org/10.4208/jams.101009.110209a">https://doi.org/10.4208/jams.101009.110209a</a>
  chicago: Lemeshko, Mikhail, and Bretislav Frierich. “Rotational Structure of Weakly
    Bound Molecular Ions.” <i>Journal of Atomic and Molecular Sciences</i>. Global
    Science Press, 2009. <a href="https://doi.org/10.4208/jams.101009.110209a">https://doi.org/10.4208/jams.101009.110209a</a>.
  ieee: M. Lemeshko and B. Frierich, “Rotational structure of weakly bound molecular
    ions,” <i>Journal of Atomic and Molecular Sciences</i>, vol. 1, no. 1. Global
    Science Press, pp. 41–47, 2009.
  ista: Lemeshko M, Frierich B. 2009. Rotational structure of weakly bound molecular
    ions. Journal of Atomic and Molecular Sciences. 1(1), 41–47.
  mla: Lemeshko, Mikhail, and Bretislav Frierich. “Rotational Structure of Weakly
    Bound Molecular Ions.” <i>Journal of Atomic and Molecular Sciences</i>, vol. 1,
    no. 1, Global Science Press, 2009, pp. 41–47, doi:<a href="https://doi.org/10.4208/jams.101009.110209a">10.4208/jams.101009.110209a</a>.
  short: M. Lemeshko, B. Frierich, Journal of Atomic and Molecular Sciences 1 (2009)
    41–47.
date_created: 2018-12-11T11:55:55Z
date_published: 2009-10-10T00:00:00Z
date_updated: 2021-01-12T06:55:32Z
day: '10'
doi: 10.4208/jams.101009.110209a
extern: 1
intvolume: '         1'
issue: '1'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/0910.5743
month: '10'
oa: 1
page: 41 - 47
publication: Journal of Atomic and Molecular Sciences
publication_status: published
publisher: Global Science Press
publist_id: '4887'
quality_controlled: 0
status: public
title: Rotational structure of weakly bound molecular ions
type: journal_article
volume: 1
year: '2009'
...
---
_id: '2149'
abstract:
- lang: eng
  text: We investigate the effects of a magnetic field on the dynamics of rotationally
    inelastic collisions of open-shell molecules (Σ2, Σ3, and Π2) with closed-shell
    atoms. Our treatment makes use of the Fraunhofer model of matter wave scattering
    and its recent extension to collisions in electric [M. Lemeshko and B. Friedrich,
    J. Chem. Phys. 129, 024301 (2008)] and radiative fields [M. Lemeshko and B. Friedrich,
    Int. J. Mass. Spec. 280, 19 (2009)]. A magnetic field aligns the molecule in the
    space-fixed frame and thereby alters the effective shape of the diffraction target.
    This significantly affects the differential and integral scattering cross sections.
    We exemplify our treatment by evaluating the magnetic-field-dependent scattering
    characteristics of the He-CaH (XΣ+2), He-O2 (XΣ–3), and He-OH (XΠΩ2) systems at
    thermal collision energies. Since the cross sections can be obtained for different
    orientations of the magnetic field with respect to the relative velocity vector,
    the model also offers predictions about the frontal-versus-lateral steric asymmetry
    of the collisions. The steric asymmetry is found to be almost negligible for the
    He-OH system, weak for the He-CaH collisions, and strong for the He-O2. While
    odd ΔM transitions dominate the He-OH [J=3/2,f→J′,e/f] integral cross sections
    in a magnetic field parallel to the relative velocity vector, even ΔM transitions
    prevail in the case of the He-CaH (X2Σ+) and He-O2 (XΣ−3) collision systems. For
    the latter system, the magnetic field opens inelastic channels that are closed
    in the absence of the field. These involve the transitions N=1,J=0→N′, J′ with
    J′=N′.
author:
- first_name: Mikhail
  full_name: Mikhail Lemeshko
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Břetislav
  full_name: Friedrich, Břetislav
  last_name: Friedrich
citation:
  ama: 'Lemeshko M, Friedrich B. Collisions of paramagnetic molecules in magnetic
    fields: An analytic model based on Fraunhofer diffraction of matter waves. <i>Physical
    Review A - Atomic, Molecular, and Optical Physics</i>. 2009;79(1). doi:<a href="https://doi.org/10.1103/PhysRevA.79.012718">10.1103/PhysRevA.79.012718</a>'
  apa: 'Lemeshko, M., &#38; Friedrich, B. (2009). Collisions of paramagnetic molecules
    in magnetic fields: An analytic model based on Fraunhofer diffraction of matter
    waves. <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>. American
    Physical Society. <a href="https://doi.org/10.1103/PhysRevA.79.012718">https://doi.org/10.1103/PhysRevA.79.012718</a>'
  chicago: 'Lemeshko, Mikhail, and Břetislav Friedrich. “Collisions of Paramagnetic
    Molecules in Magnetic Fields: An Analytic Model Based on Fraunhofer Diffraction
    of Matter Waves.” <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>.
    American Physical Society, 2009. <a href="https://doi.org/10.1103/PhysRevA.79.012718">https://doi.org/10.1103/PhysRevA.79.012718</a>.'
  ieee: 'M. Lemeshko and B. Friedrich, “Collisions of paramagnetic molecules in magnetic
    fields: An analytic model based on Fraunhofer diffraction of matter waves,” <i>Physical
    Review A - Atomic, Molecular, and Optical Physics</i>, vol. 79, no. 1. American
    Physical Society, 2009.'
  ista: 'Lemeshko M, Friedrich B. 2009. Collisions of paramagnetic molecules in magnetic
    fields: An analytic model based on Fraunhofer diffraction of matter waves. Physical
    Review A - Atomic, Molecular, and Optical Physics. 79(1).'
  mla: 'Lemeshko, Mikhail, and Břetislav Friedrich. “Collisions of Paramagnetic Molecules
    in Magnetic Fields: An Analytic Model Based on Fraunhofer Diffraction of Matter
    Waves.” <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>, vol.
    79, no. 1, American Physical Society, 2009, doi:<a href="https://doi.org/10.1103/PhysRevA.79.012718">10.1103/PhysRevA.79.012718</a>.'
  short: M. Lemeshko, B. Friedrich, Physical Review A - Atomic, Molecular, and Optical
    Physics 79 (2009).
date_created: 2018-12-11T11:55:59Z
date_published: 2009-01-30T00:00:00Z
date_updated: 2021-01-12T06:55:36Z
day: '30'
doi: 10.1103/PhysRevA.79.012718
extern: 1
intvolume: '        79'
issue: '1'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/0809.3331
month: '01'
oa: 1
publication: Physical Review A - Atomic, Molecular, and Optical Physics
publication_status: published
publisher: American Physical Society
publist_id: '4875'
quality_controlled: 0
status: public
title: 'Collisions of paramagnetic molecules in magnetic fields: An analytic model
  based on Fraunhofer diffraction of matter waves'
type: journal_article
volume: 79
year: '2009'
...
---
_id: '2150'
abstract:
- lang: eng
  text: We examine the effects of a linearly polarized nonresonant radiative field
    on the dynamics of rotationally inelastic Na+ + N2 collisions at eV collision
    energies. Our treatment is based on the Fraunhofer model of matter wave scattering
    and its recent extension to collisions in electric fields [M. Lemeshko, B. Friedrich,
    J. Chem. Phys. 129 (2008) 024301]. The nonresonant radiative field changes the
    effective shape of the target molecule by aligning it in the space-fixed frame.
    This markedly alters the differential and integral scattering cross-sections.
    As the cross-sections can be evaluated for a polarization of the radiative field
    collinear or perpendicular to the relative velocity vector, the model also offers
    predictions about steric asymmetry of the collisions.
author:
- first_name: Mikhail
  full_name: Mikhail Lemeshko
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Břetislav
  full_name: Friedrich, Břetislav
  last_name: Friedrich
citation:
  ama: Lemeshko M, Friedrich B. The effect of a nonresonant radiative field on low-energy
    rotationally inelastic Na+ + N2 collisions. <i>International Journal of Mass Spectrometry</i>.
    2009;280(1-3):19-25. doi:<a href="https://doi.org/10.1016/j.ijms.2008.06.010 ">10.1016/j.ijms.2008.06.010
    </a>
  apa: Lemeshko, M., &#38; Friedrich, B. (2009). The effect of a nonresonant radiative
    field on low-energy rotationally inelastic Na+ + N2 collisions. <i>International
    Journal of Mass Spectrometry</i>. Elsevier. <a href="https://doi.org/10.1016/j.ijms.2008.06.010
    ">https://doi.org/10.1016/j.ijms.2008.06.010 </a>
  chicago: Lemeshko, Mikhail, and Břetislav Friedrich. “The Effect of a Nonresonant
    Radiative Field on Low-Energy Rotationally Inelastic Na+ + N2 Collisions.” <i>International
    Journal of Mass Spectrometry</i>. Elsevier, 2009. <a href="https://doi.org/10.1016/j.ijms.2008.06.010
    ">https://doi.org/10.1016/j.ijms.2008.06.010 </a>.
  ieee: M. Lemeshko and B. Friedrich, “The effect of a nonresonant radiative field
    on low-energy rotationally inelastic Na+ + N2 collisions,” <i>International Journal
    of Mass Spectrometry</i>, vol. 280, no. 1–3. Elsevier, pp. 19–25, 2009.
  ista: Lemeshko M, Friedrich B. 2009. The effect of a nonresonant radiative field
    on low-energy rotationally inelastic Na+ + N2 collisions. International Journal
    of Mass Spectrometry. 280(1–3), 19–25.
  mla: Lemeshko, Mikhail, and Břetislav Friedrich. “The Effect of a Nonresonant Radiative
    Field on Low-Energy Rotationally Inelastic Na+ + N2 Collisions.” <i>International
    Journal of Mass Spectrometry</i>, vol. 280, no. 1–3, Elsevier, 2009, pp. 19–25,
    doi:<a href="https://doi.org/10.1016/j.ijms.2008.06.010 ">10.1016/j.ijms.2008.06.010
    </a>.
  short: M. Lemeshko, B. Friedrich, International Journal of Mass Spectrometry 280
    (2009) 19–25.
date_created: 2018-12-11T11:56:00Z
date_published: 2009-02-01T00:00:00Z
date_updated: 2021-01-12T06:55:37Z
day: '01'
doi: '10.1016/j.ijms.2008.06.010 '
extern: 1
intvolume: '       280'
issue: 1-3
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/0804.4845
month: '02'
oa: 1
page: 19 - 25
publication: International Journal of Mass Spectrometry
publication_status: published
publisher: Elsevier
publist_id: '4874'
quality_controlled: 0
status: public
title: The effect of a nonresonant radiative field on low-energy rotationally inelastic
  Na+ + N2 collisions
type: journal_article
volume: 280
year: '2009'
...
---
OA_type: closed access
_id: '21513'
abstract:
- lang: eng
  text: Numerical modelling of the deformation of a polymer using the finite elements
    method in axisymetrical mode was performed using the LsDyna® software to describe
    the filling of micro-cavities during the forming process of the material using
    the hot embossing. These simulations firstly allow verifying whether the chosen
    forming process conditions promote or not an optimized filling of the superficial
    cavities in order to achieve precise replicas which best reproduce the superficial
    topography of the mould. The simulations were carried out to evaluate the filling
    of the cavities taking into account the mechanical behaviour of the selected polymer
    into the model. Moreover, these models were developed to verify the effect of
    the distribution of the mould cavities on their filling. The influence of the
    mobility of non deformable rigid plates on the filling of the cavities represents
    an auxiliary variable. In the approach presented, the compression plates are assumed
    to be parallel and non deformable, whereas the polymer disk follows a rubbery
    behaviour around a temperature equal to 140°C. Globally the modelling results
    are satisfactory for they are rather close to the experimental observations conducted.
    In summary, the effect of the normal stress as also the distribution of micro-cavities
    at the mould surface seem to prevail in the case of the forming process by hot
    embossing.
article_processing_charge: No
article_type: original
author:
- first_name: Mohamed
  full_name: Sahli, Mohamed
  last_name: Sahli
- first_name: Christine
  full_name: Millot, Christine
  last_name: Millot
- first_name: Charles
  full_name: Roques-Carmes, Charles
  id: e2e68fc9-6505-11ef-a541-eb4e72cc3e82
  last_name: Roques-Carmes
- first_name: Chantal
  full_name: Khan Malek, Chantal
  last_name: Khan Malek
citation:
  ama: Sahli M, Millot C, Roques-Carmes C, Khan Malek C. Experimental analysis and
    numerical modelling of the forming process of polypropylene replicas of micro-cavities
    using hot embossing. <i>Microsystem Technologies</i>. 2009;15(6):827-835. doi:<a
    href="https://doi.org/10.1007/s00542-009-0813-6">10.1007/s00542-009-0813-6</a>
  apa: Sahli, M., Millot, C., Roques-Carmes, C., &#38; Khan Malek, C. (2009). Experimental
    analysis and numerical modelling of the forming process of polypropylene replicas
    of micro-cavities using hot embossing. <i>Microsystem Technologies</i>. Springer
    Nature. <a href="https://doi.org/10.1007/s00542-009-0813-6">https://doi.org/10.1007/s00542-009-0813-6</a>
  chicago: Sahli, Mohamed, Christine Millot, Charles Roques-Carmes, and Chantal Khan
    Malek. “Experimental Analysis and Numerical Modelling of the Forming Process of
    Polypropylene Replicas of Micro-Cavities Using Hot Embossing.” <i>Microsystem
    Technologies</i>. Springer Nature, 2009. <a href="https://doi.org/10.1007/s00542-009-0813-6">https://doi.org/10.1007/s00542-009-0813-6</a>.
  ieee: M. Sahli, C. Millot, C. Roques-Carmes, and C. Khan Malek, “Experimental analysis
    and numerical modelling of the forming process of polypropylene replicas of micro-cavities
    using hot embossing,” <i>Microsystem Technologies</i>, vol. 15, no. 6. Springer
    Nature, pp. 827–835, 2009.
  ista: Sahli M, Millot C, Roques-Carmes C, Khan Malek C. 2009. Experimental analysis
    and numerical modelling of the forming process of polypropylene replicas of micro-cavities
    using hot embossing. Microsystem Technologies. 15(6), 827–835.
  mla: Sahli, Mohamed, et al. “Experimental Analysis and Numerical Modelling of the
    Forming Process of Polypropylene Replicas of Micro-Cavities Using Hot Embossing.”
    <i>Microsystem Technologies</i>, vol. 15, no. 6, Springer Nature, 2009, pp. 827–35,
    doi:<a href="https://doi.org/10.1007/s00542-009-0813-6">10.1007/s00542-009-0813-6</a>.
  short: M. Sahli, C. Millot, C. Roques-Carmes, C. Khan Malek, Microsystem Technologies
    15 (2009) 827–835.
date_created: 2026-03-30T12:22:47Z
date_published: 2009-06-01T00:00:00Z
date_updated: 2026-04-27T09:57:37Z
day: '01'
ddc:
- '530'
doi: 10.1007/s00542-009-0813-6
extern: '1'
intvolume: '        15'
issue: '6'
language:
- iso: eng
month: '06'
oa_version: None
page: 827-835
publication: Microsystem Technologies
publication_identifier:
  eissn:
  - 1432-1858
  issn:
  - 0946-7076
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Experimental analysis and numerical modelling of the forming process of polypropylene
  replicas of micro-cavities using hot embossing
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 15
year: '2009'
...
---
OA_type: closed access
_id: '21514'
abstract:
- lang: eng
  text: "This paper describes observations and metrological analyses made to compare
    the replication quality of polymeric replicas obtained by filling micro-cavities
    using both hot embossing and micro-injection moulding processes. The experiments
    are performed with polypropylene (PP) at a constant melt temperature and a constant
    mould temperature, whereas hot embossing tests are carried out with the same polymer
    at temperatures close to the softening one.\r\nThe results concerning the micro-cavities
    filling provide information on the reliability about the possibilities of replication
    topographical surface geometries. The data obtained by scanning mechanical microscopy
    (SMM) are used to determine the comparative filling ratio values."
article_processing_charge: No
article_type: original
author:
- first_name: M.
  full_name: Sahli, M.
  last_name: Sahli
- first_name: C.
  full_name: Millot, C.
  last_name: Millot
- first_name: Charles
  full_name: Roques-Carmes, Charles
  id: e2e68fc9-6505-11ef-a541-eb4e72cc3e82
  last_name: Roques-Carmes
- first_name: C.
  full_name: Khan Malek, C.
  last_name: Khan Malek
- first_name: T.
  full_name: Barriere, T.
  last_name: Barriere
- first_name: J.C.
  full_name: Gelin, J.C.
  last_name: Gelin
citation:
  ama: Sahli M, Millot C, Roques-Carmes C, Khan Malek C, Barriere T, Gelin JC. Quality
    assessment of polymer replication by hot embossing and micro-injection moulding
    processes using scanning mechanical microscopy. <i>Journal of Materials Processing
    Technology</i>. 2009;209(18-19):5851-5861. doi:<a href="https://doi.org/10.1016/j.jmatprotec.2009.06.011">10.1016/j.jmatprotec.2009.06.011</a>
  apa: Sahli, M., Millot, C., Roques-Carmes, C., Khan Malek, C., Barriere, T., &#38;
    Gelin, J. C. (2009). Quality assessment of polymer replication by hot embossing
    and micro-injection moulding processes using scanning mechanical microscopy. <i>Journal
    of Materials Processing Technology</i>. Elsevier. <a href="https://doi.org/10.1016/j.jmatprotec.2009.06.011">https://doi.org/10.1016/j.jmatprotec.2009.06.011</a>
  chicago: Sahli, M., C. Millot, Charles Roques-Carmes, C. Khan Malek, T. Barriere,
    and J.C. Gelin. “Quality Assessment of Polymer Replication by Hot Embossing and
    Micro-Injection Moulding Processes Using Scanning Mechanical Microscopy.” <i>Journal
    of Materials Processing Technology</i>. Elsevier, 2009. <a href="https://doi.org/10.1016/j.jmatprotec.2009.06.011">https://doi.org/10.1016/j.jmatprotec.2009.06.011</a>.
  ieee: M. Sahli, C. Millot, C. Roques-Carmes, C. Khan Malek, T. Barriere, and J.
    C. Gelin, “Quality assessment of polymer replication by hot embossing and micro-injection
    moulding processes using scanning mechanical microscopy,” <i>Journal of Materials
    Processing Technology</i>, vol. 209, no. 18–19. Elsevier, pp. 5851–5861, 2009.
  ista: Sahli M, Millot C, Roques-Carmes C, Khan Malek C, Barriere T, Gelin JC. 2009.
    Quality assessment of polymer replication by hot embossing and micro-injection
    moulding processes using scanning mechanical microscopy. Journal of Materials
    Processing Technology. 209(18–19), 5851–5861.
  mla: Sahli, M., et al. “Quality Assessment of Polymer Replication by Hot Embossing
    and Micro-Injection Moulding Processes Using Scanning Mechanical Microscopy.”
    <i>Journal of Materials Processing Technology</i>, vol. 209, no. 18–19, Elsevier,
    2009, pp. 5851–61, doi:<a href="https://doi.org/10.1016/j.jmatprotec.2009.06.011">10.1016/j.jmatprotec.2009.06.011</a>.
  short: M. Sahli, C. Millot, C. Roques-Carmes, C. Khan Malek, T. Barriere, J.C. Gelin,
    Journal of Materials Processing Technology 209 (2009) 5851–5861.
date_created: 2026-03-30T12:22:47Z
date_published: 2009-09-19T00:00:00Z
date_updated: 2026-04-15T12:52:03Z
day: '19'
ddc:
- '530'
doi: 10.1016/j.jmatprotec.2009.06.011
extern: '1'
intvolume: '       209'
issue: 18-19
keyword:
- Hot embossing
- Micro-injection moulding
- Micro-cavities replication
- Polypropylene polymer
- Scanning mechanical microscopy
- Roughness parameters
language:
- iso: eng
month: '09'
oa_version: None
page: 5851-5861
publication: Journal of Materials Processing Technology
publication_identifier:
  eissn:
  - 1873-4774
  issn:
  - 0924-0136
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Quality assessment of polymer replication by hot embossing and micro-injection
  moulding processes using scanning mechanical microscopy
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 209
year: '2009'
...
---
_id: '2191'
abstract:
- lang: eng
  text: 'By making use of the quantization rule of Raab and Friedrich [Phys. Rev.
    A 78, 022707 (2008)], we derive simple and accurate formulae for the number of
    rotational states supported by a weakly bound vibrational level of a diatomic
    molecule and the rotational constants of any such levels up to the threshold,
    and provide a criterion for determining whether a given weakly bound vibrational
    level is rotationless. The results depend solely on the long-range part of the
    molecular potential and are applicable to halo molecules. '
author:
- first_name: Mikhail
  full_name: Mikhail Lemeshko
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Břetislav
  full_name: Friedrich, Břetislav
  last_name: Friedrich
citation:
  ama: Lemeshko M, Friedrich B. Rotational and rotationless states of weakly bound
    molecules. <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>.
    2009;79(5). doi:<a href="https://doi.org/10.1103/PhysRevA.79.050501">10.1103/PhysRevA.79.050501</a>
  apa: Lemeshko, M., &#38; Friedrich, B. (2009). Rotational and rotationless states
    of weakly bound molecules. <i>Physical Review A - Atomic, Molecular, and Optical
    Physics</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevA.79.050501">https://doi.org/10.1103/PhysRevA.79.050501</a>
  chicago: Lemeshko, Mikhail, and Břetislav Friedrich. “Rotational and Rotationless
    States of Weakly Bound Molecules.” <i>Physical Review A - Atomic, Molecular, and
    Optical Physics</i>. American Physical Society, 2009. <a href="https://doi.org/10.1103/PhysRevA.79.050501">https://doi.org/10.1103/PhysRevA.79.050501</a>.
  ieee: M. Lemeshko and B. Friedrich, “Rotational and rotationless states of weakly
    bound molecules,” <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>,
    vol. 79, no. 5. American Physical Society, 2009.
  ista: Lemeshko M, Friedrich B. 2009. Rotational and rotationless states of weakly
    bound molecules. Physical Review A - Atomic, Molecular, and Optical Physics. 79(5).
  mla: Lemeshko, Mikhail, and Břetislav Friedrich. “Rotational and Rotationless States
    of Weakly Bound Molecules.” <i>Physical Review A - Atomic, Molecular, and Optical
    Physics</i>, vol. 79, no. 5, American Physical Society, 2009, doi:<a href="https://doi.org/10.1103/PhysRevA.79.050501">10.1103/PhysRevA.79.050501</a>.
  short: M. Lemeshko, B. Friedrich, Physical Review A - Atomic, Molecular, and Optical
    Physics 79 (2009).
date_created: 2018-12-11T11:56:14Z
date_published: 2009-05-26T00:00:00Z
date_updated: 2021-01-12T06:55:53Z
day: '26'
doi: 10.1103/PhysRevA.79.050501
extern: 1
intvolume: '        79'
issue: '5'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/0904.0567
month: '05'
oa: 1
publication: Physical Review A - Atomic, Molecular, and Optical Physics
publication_status: published
publisher: American Physical Society
publist_id: '4783'
quality_controlled: 0
status: public
title: Rotational and rotationless states of weakly bound molecules
type: journal_article
volume: 79
year: '2009'
...
