---
_id: '1797'
abstract:
- lang: eng
  text: Intrinsically photosensitive melanopsin-containing retinal ganglion cells
    (ipRGCs) control important physiological processes, including the circadian rhythm,
    the pupillary reflex, and the suppression of locomotor behavior (reviewed in [1]).
    ipRGCs are also activated by classical photoreceptors, the rods and cones, through
    local retinal circuits [2, 3]. ipRGCs can be transsynaptically labeled through
    the pupillary-reflex circuit with the derivatives of the Bartha strain of the
    alphaherpesvirus pseudorabies virus(PRV) [4, 5] that express GFP [6-12]. Bartha-strain
    derivatives spread only in the retrograde direction [13]. There is evidence that
    infected cells function normally for a while during GFP expression [7]. Here we
    combine transsynaptic PRV labeling, two-photon laser microscopy, and electrophysiological
    techniques to trace the local circuit of different ipRGC subtypes in the mouse
    retina and record light-evoked activity from the transsynaptically labeled ganglion
    cells. First, we show that ipRGCs are connected by monostratified amacrine cells
    that provide strong inhibition from classical-photoreceptor-driven circuits. Second,
    we show evidence that dopaminergic interplexiform cells are synaptically connected
    to ipRGCs. The latter finding provides a circuitry link between light-dark adaptation
    and ipRGC function.
acknowledgement: This study was supported by Office of Naval Research Multidisciplinary
  University Research Initiative [ONR MURI] and Naval International Cooperative Opportunities
  in Science and Technology Program [NICOP] grants, a Marie Curie Excellence Grant,
  a Human Frontier Science Program [HFSP] Young Investigator grant, and Friedrich
  Miescher Institute funds to B.R.
author:
- first_name: Tim
  full_name: Viney, Tim J
  last_name: Viney
- first_name: Kamill
  full_name: Bálint, Kamill
  last_name: Bálint
- first_name: Dániel
  full_name: Hillier, Dániel
  last_name: Hillier
- first_name: Sandra
  full_name: Sandra Siegert
  id: 36ACD32E-F248-11E8-B48F-1D18A9856A87
  last_name: Siegert
  orcid: 0000-0001-8635-0877
- first_name: Zsolt
  full_name: Boldogköi, Zsolt S
  last_name: Boldogköi
- first_name: Lynn
  full_name: Enquist, Lynn W
  last_name: Enquist
- first_name: Markus
  full_name: Meister, Markus
  last_name: Meister
- first_name: Constance
  full_name: Cepko, Constance L
  last_name: Cepko
- first_name: Botond
  full_name: Roska, Botond M
  last_name: Roska
citation:
  ama: Viney T, Bálint K, Hillier D, et al. Local retinal circuits of melanopsin-containing
    ganglion cells identified by transsynaptic viral tracing. <i>Current Biology</i>.
    2007;17(11):981-988. doi:<a href="https://doi.org/10.1016/j.cub.2007.04.058">10.1016/j.cub.2007.04.058</a>
  apa: Viney, T., Bálint, K., Hillier, D., Siegert, S., Boldogköi, Z., Enquist, L.,
    … Roska, B. (2007). Local retinal circuits of melanopsin-containing ganglion cells
    identified by transsynaptic viral tracing. <i>Current Biology</i>. Cell Press.
    <a href="https://doi.org/10.1016/j.cub.2007.04.058">https://doi.org/10.1016/j.cub.2007.04.058</a>
  chicago: Viney, Tim, Kamill Bálint, Dániel Hillier, Sandra Siegert, Zsolt Boldogköi,
    Lynn Enquist, Markus Meister, Constance Cepko, and Botond Roska. “Local Retinal
    Circuits of Melanopsin-Containing Ganglion Cells Identified by Transsynaptic Viral
    Tracing.” <i>Current Biology</i>. Cell Press, 2007. <a href="https://doi.org/10.1016/j.cub.2007.04.058">https://doi.org/10.1016/j.cub.2007.04.058</a>.
  ieee: T. Viney <i>et al.</i>, “Local retinal circuits of melanopsin-containing ganglion
    cells identified by transsynaptic viral tracing,” <i>Current Biology</i>, vol.
    17, no. 11. Cell Press, pp. 981–988, 2007.
  ista: Viney T, Bálint K, Hillier D, Siegert S, Boldogköi Z, Enquist L, Meister M,
    Cepko C, Roska B. 2007. Local retinal circuits of melanopsin-containing ganglion
    cells identified by transsynaptic viral tracing. Current Biology. 17(11), 981–988.
  mla: Viney, Tim, et al. “Local Retinal Circuits of Melanopsin-Containing Ganglion
    Cells Identified by Transsynaptic Viral Tracing.” <i>Current Biology</i>, vol.
    17, no. 11, Cell Press, 2007, pp. 981–88, doi:<a href="https://doi.org/10.1016/j.cub.2007.04.058">10.1016/j.cub.2007.04.058</a>.
  short: T. Viney, K. Bálint, D. Hillier, S. Siegert, Z. Boldogköi, L. Enquist, M.
    Meister, C. Cepko, B. Roska, Current Biology 17 (2007) 981–988.
date_created: 2018-12-11T11:54:04Z
date_published: 2007-06-05T00:00:00Z
date_updated: 2021-01-12T06:53:15Z
day: '05'
doi: 10.1016/j.cub.2007.04.058
extern: 1
intvolume: '        17'
issue: '11'
month: '06'
page: 981 - 988
publication: Current Biology
publication_status: published
publisher: Cell Press
publist_id: '5313'
quality_controlled: 0
status: public
title: Local retinal circuits of melanopsin-containing ganglion cells identified by
  transsynaptic viral tracing
type: journal_article
volume: 17
year: '2007'
...
---
OA_type: closed access
_id: '18035'
abstract:
- lang: eng
  text: We compare the low bias conductance of a series of alkanes terminated on their
    ends with dimethyl phosphines, methyl sulfides, and amines and find that junctions
    formed with dimethyl phosphine terminated alkanes have the highest conductance.
    We see unambiguous conductance signatures with these link groups, indicating that
    the binding is well-defined and electronically selective. This allows a detailed
    analysis of the single-molecule junction elongation properties which correlate
    well with calculations based on density functional theory.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Young S.
  full_name: Park, Young S.
  last_name: Park
- first_name: Adam C.
  full_name: Whalley, Adam C.
  last_name: Whalley
- first_name: Maria
  full_name: Kamenetska, Maria
  last_name: Kamenetska
- first_name: Michael L.
  full_name: Steigerwald, Michael L.
  last_name: Steigerwald
- first_name: Mark S.
  full_name: Hybertsen, Mark S.
  last_name: Hybertsen
- first_name: Colin
  full_name: Nuckolls, Colin
  last_name: Nuckolls
- first_name: Latha
  full_name: Venkataraman, Latha
  id: 9ebb78a5-cc0d-11ee-8322-fae086a32caf
  last_name: Venkataraman
  orcid: 0000-0002-6957-6089
citation:
  ama: Park YS, Whalley AC, Kamenetska M, et al. Contact chemistry and single-molecule
    conductance:  A comparison of phosphines, methyl sulfides, and amines. <i>Journal
    of the American Chemical Society</i>. 2007;129(51):15768-15769. doi:<a href="https://doi.org/10.1021/ja0773857">10.1021/ja0773857</a>
  apa: Park, Y. S., Whalley, A. C., Kamenetska, M., Steigerwald, M. L., Hybertsen,
    M. S., Nuckolls, C., &#38; Venkataraman, L. (2007). Contact chemistry and single-molecule
    conductance:  A comparison of phosphines, methyl sulfides, and amines. <i>Journal
    of the American Chemical Society</i>. American Chemical Society. <a href="https://doi.org/10.1021/ja0773857">https://doi.org/10.1021/ja0773857</a>
  chicago: Park, Young S., Adam C. Whalley, Maria Kamenetska, Michael L. Steigerwald,
    Mark S. Hybertsen, Colin Nuckolls, and Latha Venkataraman. “Contact Chemistry
    and Single-Molecule Conductance:  A Comparison of Phosphines, Methyl Sulfides,
    and Amines.” <i>Journal of the American Chemical Society</i>. American Chemical
    Society, 2007. <a href="https://doi.org/10.1021/ja0773857">https://doi.org/10.1021/ja0773857</a>.
  ieee: Y. S. Park <i>et al.</i>, “Contact chemistry and single-molecule conductance: 
    A comparison of phosphines, methyl sulfides, and amines,” <i>Journal of the American
    Chemical Society</i>, vol. 129, no. 51. American Chemical Society, pp. 15768–15769,
    2007.
  ista: Park YS, Whalley AC, Kamenetska M, Steigerwald ML, Hybertsen MS, Nuckolls
    C, Venkataraman L. 2007. Contact chemistry and single-molecule conductance:  A
    comparison of phosphines, methyl sulfides, and amines. Journal of the American
    Chemical Society. 129(51), 15768–15769.
  mla: Park, Young S., et al. “Contact Chemistry and Single-Molecule Conductance: 
    A Comparison of Phosphines, Methyl Sulfides, and Amines.” <i>Journal of the American
    Chemical Society</i>, vol. 129, no. 51, American Chemical Society, 2007, pp. 15768–69,
    doi:<a href="https://doi.org/10.1021/ja0773857">10.1021/ja0773857</a>.
  short: Y.S. Park, A.C. Whalley, M. Kamenetska, M.L. Steigerwald, M.S. Hybertsen,
    C. Nuckolls, L. Venkataraman, Journal of the American Chemical Society 129 (2007)
    15768–15769.
date_created: 2024-09-09T14:44:32Z
date_published: 2007-12-05T00:00:00Z
date_updated: 2025-01-03T10:59:43Z
day: '05'
doi: 10.1021/ja0773857
extern: '1'
external_id:
  pmid:
  - '18052282'
intvolume: '       129'
issue: '51'
language:
- iso: eng
month: '12'
oa_version: None
page: 15768-15769
pmid: 1
publication: Journal of the American Chemical Society
publication_identifier:
  eissn:
  - 1520-5126
  issn:
  - 0002-7863
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Contact chemistry and single-molecule conductance:  A comparison of phosphines,
  methyl sulfides, and amines
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 129
year: '2007'
...
---
OA_type: closed access
_id: '18036'
abstract:
- lang: eng
  text: We measured conductance traces while breaking gold point contacts in a solution
    of molecules containing the μ-p-phenylenediethynyl X−C⋮C−C6H4−C⋮C−X unit, with
    eight different capping X groups:  Au−P(OMe)3 (1), H (2), SiMe3 (3), Au−P(cy)3
    (4), Au−PMe2Ph (5), Au−PMePh2 (6), Au−PMe3 (7), and Au−PPh3 (8). Our goal with
    this work was to achieve a direct Au−C link with a conjugated organic group, potentially
    forming a molecular junction without chemical link groups that typically decrease
    junction conductances, such as thiols or amines. Conductance traces collected
    in the presence of molecules 1, 2, 3, 5, and 7 reveal additional steps at conductances
    as high as 0.1 G0 (G0 = 2e2/h) down to the measurable limits of the experimental
    setup. Conductance histograms generated from these traces therefore show a broad
    increase of counts when compared to a control histogram collected in the solvent
    alone suggesting the binding of the molecules to the broken Au contacts. The histograms
    for molecules 1, 5, 7, and 2 were not distinguishable, although that of molecule
    3 had considerably fewer counts over the entire conductance range, suggesting
    that the steric bulk of the SiMe3 prevented frequent junction formation. The histograms
    collected in a solution of molecules 4, 6, or 8 did not differ from that of the
    control histogram probably because of the steric bulk of the Au−PR3 capping groups
    prevented the formation a molecular junction.
article_processing_charge: No
article_type: original
author:
- first_name: David
  full_name: Millar, David
  last_name: Millar
- first_name: Latha
  full_name: Venkataraman, Latha
  id: 9ebb78a5-cc0d-11ee-8322-fae086a32caf
  last_name: Venkataraman
  orcid: 0000-0002-6957-6089
- first_name: Linda H.
  full_name: Doerrer, Linda H.
  last_name: Doerrer
citation:
  ama: Millar D, Venkataraman L, Doerrer LH. Efficacy of Au−Au contacts for scanning
    tunneling microscopy molecular conductance measurements. <i>The Journal of Physical
    Chemistry C</i>. 2007;111(47):17635-17639. doi:<a href="https://doi.org/10.1021/jp0756101">10.1021/jp0756101</a>
  apa: Millar, D., Venkataraman, L., &#38; Doerrer, L. H. (2007). Efficacy of Au−Au
    contacts for scanning tunneling microscopy molecular conductance measurements.
    <i>The Journal of Physical Chemistry C</i>. American Chemical Society. <a href="https://doi.org/10.1021/jp0756101">https://doi.org/10.1021/jp0756101</a>
  chicago: Millar, David, Latha Venkataraman, and Linda H. Doerrer. “Efficacy of Au−Au
    Contacts for Scanning Tunneling Microscopy Molecular Conductance Measurements.”
    <i>The Journal of Physical Chemistry C</i>. American Chemical Society, 2007. <a
    href="https://doi.org/10.1021/jp0756101">https://doi.org/10.1021/jp0756101</a>.
  ieee: D. Millar, L. Venkataraman, and L. H. Doerrer, “Efficacy of Au−Au contacts
    for scanning tunneling microscopy molecular conductance measurements,” <i>The
    Journal of Physical Chemistry C</i>, vol. 111, no. 47. American Chemical Society,
    pp. 17635–17639, 2007.
  ista: Millar D, Venkataraman L, Doerrer LH. 2007. Efficacy of Au−Au contacts for
    scanning tunneling microscopy molecular conductance measurements. The Journal
    of Physical Chemistry C. 111(47), 17635–17639.
  mla: Millar, David, et al. “Efficacy of Au−Au Contacts for Scanning Tunneling Microscopy
    Molecular Conductance Measurements.” <i>The Journal of Physical Chemistry C</i>,
    vol. 111, no. 47, American Chemical Society, 2007, pp. 17635–39, doi:<a href="https://doi.org/10.1021/jp0756101">10.1021/jp0756101</a>.
  short: D. Millar, L. Venkataraman, L.H. Doerrer, The Journal of Physical Chemistry
    C 111 (2007) 17635–17639.
date_created: 2024-09-09T14:45:13Z
date_published: 2007-11-02T00:00:00Z
date_updated: 2025-01-03T11:02:03Z
day: '02'
doi: 10.1021/jp0756101
extern: '1'
intvolume: '       111'
issue: '47'
language:
- iso: eng
month: '11'
oa_version: None
page: 17635-17639
publication: The Journal of Physical Chemistry C
publication_identifier:
  eissn:
  - 1932-7455
  issn:
  - 1932-7447
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Efficacy of Au−Au contacts for scanning tunneling microscopy molecular conductance
  measurements
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 111
year: '2007'
...
---
OA_place: repository
OA_type: green
_id: '18037'
abstract:
- lang: eng
  text: A combination of theory and experiment is used to quantitatively understand
    the conductance of single-molecule benzenediamine−gold junctions. A newly developed
    analysis is applied to a measured junction conductance distribution, based on
    59 000 individual conductance traces, which has a clear peak at 0.0064 G0 and
    a width of ±47%. This analysis establishes that the distribution width originates
    predominantly from variations in conductance across different junctions rather
    than variations in conductance during junction elongation. Conductance calculations
    based on density functional theory (DFT) for 15 distinct junction geometries show
    a similar spread. We show explicitly that differences in local structure have
    a limited influence on conductance because the amine−Au bonding motif is well-defined
    and flexible, explaining the narrow distributions seen in the experiments. The
    minimal impact of junction structure on conductance permits an unambiguous comparison
    of calculated and measured conductance values and a direct assessment of the widely
    used DFT theoretical framework. The average calculated conductance (0.046 G0)
    is found to be seven times larger than experiment. This discrepancy is explained
    quantitatively in terms of electron correlation effects to the molecular level
    alignments in the junction.
article_processing_charge: No
article_type: letter_note
arxiv: 1
author:
- first_name: Su Ying
  full_name: Quek, Su Ying
  last_name: Quek
- first_name: Latha
  full_name: Venkataraman, Latha
  id: 9ebb78a5-cc0d-11ee-8322-fae086a32caf
  last_name: Venkataraman
  orcid: 0000-0002-6957-6089
- first_name: Hyoung Joon
  full_name: Choi, Hyoung Joon
  last_name: Choi
- first_name: Steven G.
  full_name: Louie, Steven G.
  last_name: Louie
- first_name: Mark S.
  full_name: Hybertsen, Mark S.
  last_name: Hybertsen
- first_name: J. B.
  full_name: Neaton, J. B.
  last_name: Neaton
citation:
  ama: Quek SY, Venkataraman L, Choi HJ, Louie SG, Hybertsen MS, Neaton JB. Amine−gold
    linked single-molecule circuits:  Experiment and theory. <i>Nano Letters</i>.
    2007;7(11):3477-3482. doi:<a href="https://doi.org/10.1021/nl072058i">10.1021/nl072058i</a>
  apa: Quek, S. Y., Venkataraman, L., Choi, H. J., Louie, S. G., Hybertsen, M. S.,
    &#38; Neaton, J. B. (2007). Amine−gold linked single-molecule circuits:  Experiment
    and theory. <i>Nano Letters</i>. American Chemical Society. <a href="https://doi.org/10.1021/nl072058i">https://doi.org/10.1021/nl072058i</a>
  chicago: Quek, Su Ying, Latha Venkataraman, Hyoung Joon Choi, Steven G. Louie, Mark
    S. Hybertsen, and J. B. Neaton. “Amine−gold Linked Single-Molecule Circuits: 
    Experiment and Theory.” <i>Nano Letters</i>. American Chemical Society, 2007.
    <a href="https://doi.org/10.1021/nl072058i">https://doi.org/10.1021/nl072058i</a>.
  ieee: S. Y. Quek, L. Venkataraman, H. J. Choi, S. G. Louie, M. S. Hybertsen, and
    J. B. Neaton, “Amine−gold linked single-molecule circuits:  Experiment and theory,”
    <i>Nano Letters</i>, vol. 7, no. 11. American Chemical Society, pp. 3477–3482,
    2007.
  ista: Quek SY, Venkataraman L, Choi HJ, Louie SG, Hybertsen MS, Neaton JB. 2007.
    Amine−gold linked single-molecule circuits:  Experiment and theory. Nano Letters.
    7(11), 3477–3482.
  mla: Quek, Su Ying, et al. “Amine−gold Linked Single-Molecule Circuits:  Experiment
    and Theory.” <i>Nano Letters</i>, vol. 7, no. 11, American Chemical Society, 2007,
    pp. 3477–82, doi:<a href="https://doi.org/10.1021/nl072058i">10.1021/nl072058i</a>.
  short: S.Y. Quek, L. Venkataraman, H.J. Choi, S.G. Louie, M.S. Hybertsen, J.B. Neaton,
    Nano Letters 7 (2007) 3477–3482.
date_created: 2024-09-09T14:52:18Z
date_published: 2007-09-27T00:00:00Z
date_updated: 2025-01-03T11:04:27Z
day: '27'
doi: 10.1021/nl072058i
extern: '1'
external_id:
  arxiv:
  - '0707.2091'
  pmid:
  - '17900162'
intvolume: '         7'
issue: '11'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/0707.2091
month: '09'
oa: 1
oa_version: Preprint
page: 3477-3482
pmid: 1
publication: Nano Letters
publication_identifier:
  eissn:
  - 1530-6992
  issn:
  - 1530-6984
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Amine−gold linked single-molecule circuits:  Experiment and theory
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2007'
...
---
OA_type: closed access
_id: '18038'
abstract:
- lang: eng
  text: Cyclic voltammetry determines first and second oxidation potentials of conducting
    diamines. The results show that unsubstituted and methyl-substituted molecules
    conduct electricity in partially positively charged states, reflecting electron
    delocalization at the wire−gold junctions, but with electron-withdrawing substituents,
    the molecular wires are closer to uncharged as conductors, consistent with HOMO
    arguments.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Jordan R.
  full_name: Quinn, Jordan R.
  last_name: Quinn
- first_name: Frank W.
  full_name: Foss, Frank W.
  last_name: Foss
- first_name: Latha
  full_name: Venkataraman, Latha
  id: 9ebb78a5-cc0d-11ee-8322-fae086a32caf
  last_name: Venkataraman
  orcid: 0000-0002-6957-6089
- first_name: Ronald
  full_name: Breslow, Ronald
  last_name: Breslow
citation:
  ama: Quinn JR, Foss FW, Venkataraman L, Breslow R. Oxidation potentials correlate
    with conductivities of aromatic molecular wires. <i>Journal of the American Chemical
    Society</i>. 2007;129(41):12376-12377. doi:<a href="https://doi.org/10.1021/ja0745097">10.1021/ja0745097</a>
  apa: Quinn, J. R., Foss, F. W., Venkataraman, L., &#38; Breslow, R. (2007). Oxidation
    potentials correlate with conductivities of aromatic molecular wires. <i>Journal
    of the American Chemical Society</i>. American Chemical Society. <a href="https://doi.org/10.1021/ja0745097">https://doi.org/10.1021/ja0745097</a>
  chicago: Quinn, Jordan R., Frank W. Foss, Latha Venkataraman, and Ronald Breslow.
    “Oxidation Potentials Correlate with Conductivities of Aromatic Molecular Wires.”
    <i>Journal of the American Chemical Society</i>. American Chemical Society, 2007.
    <a href="https://doi.org/10.1021/ja0745097">https://doi.org/10.1021/ja0745097</a>.
  ieee: J. R. Quinn, F. W. Foss, L. Venkataraman, and R. Breslow, “Oxidation potentials
    correlate with conductivities of aromatic molecular wires,” <i>Journal of the
    American Chemical Society</i>, vol. 129, no. 41. American Chemical Society, pp.
    12376–12377, 2007.
  ista: Quinn JR, Foss FW, Venkataraman L, Breslow R. 2007. Oxidation potentials correlate
    with conductivities of aromatic molecular wires. Journal of the American Chemical
    Society. 129(41), 12376–12377.
  mla: Quinn, Jordan R., et al. “Oxidation Potentials Correlate with Conductivities
    of Aromatic Molecular Wires.” <i>Journal of the American Chemical Society</i>,
    vol. 129, no. 41, American Chemical Society, 2007, pp. 12376–77, doi:<a href="https://doi.org/10.1021/ja0745097">10.1021/ja0745097</a>.
  short: J.R. Quinn, F.W. Foss, L. Venkataraman, R. Breslow, Journal of the American
    Chemical Society 129 (2007) 12376–12377.
date_created: 2024-09-09T14:52:57Z
date_published: 2007-09-22T00:00:00Z
date_updated: 2025-01-03T11:06:28Z
day: '22'
doi: 10.1021/ja0745097
extern: '1'
external_id:
  pmid:
  - '17887757'
intvolume: '       129'
issue: '41'
language:
- iso: eng
month: '09'
oa_version: None
page: 12376-12377
pmid: 1
publication: Journal of the American Chemical Society
publication_identifier:
  eissn:
  - 1520-5126
  issn:
  - 0002-7863
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Oxidation potentials correlate with conductivities of aromatic molecular wires
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 129
year: '2007'
...
---
OA_place: repository
OA_type: green
_id: '18039'
abstract:
- lang: eng
  text: Conductivities have been measured for diaminoacenes with benzene, naphthalene,
    and anthracene rings. The conductivities were strong functions of the placement
    of the amino group contact points for the gold electrodes. There was good correlation
    with quantum-mechanical theory, and with the stabilities of the related mono-
    and dications of the molecules. It is proposed that some electron abstraction
    by the drain precedes electron donation by the source with these electron-rich
    systems.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Jordan R.
  full_name: Quinn, Jordan R.
  last_name: Quinn
- first_name: Frank W.
  full_name: Foss, Frank W.
  last_name: Foss
- first_name: Latha
  full_name: Venkataraman, Latha
  id: 9ebb78a5-cc0d-11ee-8322-fae086a32caf
  last_name: Venkataraman
  orcid: 0000-0002-6957-6089
- first_name: Mark S.
  full_name: Hybertsen, Mark S.
  last_name: Hybertsen
- first_name: Ronald
  full_name: Breslow, Ronald
  last_name: Breslow
citation:
  ama: Quinn JR, Foss FW, Venkataraman L, Hybertsen MS, Breslow R. Single-molecule
    junction conductance through diaminoacenes. <i>Journal of the American Chemical
    Society</i>. 2007;129(21):6714-6715. doi:<a href="https://doi.org/10.1021/ja0715804">10.1021/ja0715804</a>
  apa: Quinn, J. R., Foss, F. W., Venkataraman, L., Hybertsen, M. S., &#38; Breslow,
    R. (2007). Single-molecule junction conductance through diaminoacenes. <i>Journal
    of the American Chemical Society</i>. American Chemical Society. <a href="https://doi.org/10.1021/ja0715804">https://doi.org/10.1021/ja0715804</a>
  chicago: Quinn, Jordan R., Frank W. Foss, Latha Venkataraman, Mark S. Hybertsen,
    and Ronald Breslow. “Single-Molecule Junction Conductance through Diaminoacenes.”
    <i>Journal of the American Chemical Society</i>. American Chemical Society, 2007.
    <a href="https://doi.org/10.1021/ja0715804">https://doi.org/10.1021/ja0715804</a>.
  ieee: J. R. Quinn, F. W. Foss, L. Venkataraman, M. S. Hybertsen, and R. Breslow,
    “Single-molecule junction conductance through diaminoacenes,” <i>Journal of the
    American Chemical Society</i>, vol. 129, no. 21. American Chemical Society, pp.
    6714–6715, 2007.
  ista: Quinn JR, Foss FW, Venkataraman L, Hybertsen MS, Breslow R. 2007. Single-molecule
    junction conductance through diaminoacenes. Journal of the American Chemical Society.
    129(21), 6714–6715.
  mla: Quinn, Jordan R., et al. “Single-Molecule Junction Conductance through Diaminoacenes.”
    <i>Journal of the American Chemical Society</i>, vol. 129, no. 21, American Chemical
    Society, 2007, pp. 6714–15, doi:<a href="https://doi.org/10.1021/ja0715804">10.1021/ja0715804</a>.
  short: J.R. Quinn, F.W. Foss, L. Venkataraman, M.S. Hybertsen, R. Breslow, Journal
    of the American Chemical Society 129 (2007) 6714–6715.
date_created: 2024-09-09T14:53:43Z
date_published: 2007-05-09T00:00:00Z
date_updated: 2025-01-03T11:08:39Z
day: '09'
doi: 10.1021/ja0715804
extern: '1'
external_id:
  arxiv:
  - '0705.3374'
  pmid:
  - '17488083'
intvolume: '       129'
issue: '21'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/0705.3374
month: '05'
oa: 1
oa_version: Preprint
page: 6714-6715
pmid: 1
publication: Journal of the American Chemical Society
publication_identifier:
  eissn:
  - 1520-5126
  issn:
  - 0002-7863
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Single-molecule junction conductance through diaminoacenes
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 129
year: '2007'
...
---
OA_place: repository
OA_type: green
_id: '18040'
abstract:
- lang: eng
  text: We measure the low bias conductance of a series of substituted benzene diamine
    molecules while breaking a gold point contact in a solution of the molecules.
    Transport through these substituted benzenes is by means of nonresonant tunneling
    or superexchange, with the molecular junction conductance depending on the alignment
    of the metal Fermi level to the closest molecular level. Electron-donating substituents,
    which drive the occupied molecular orbitals up, increase the junction conductance,
    while electron-withdrawing substituents have the opposite effect. Thus for the
    measured series, conductance varies inversely with the calculated ionization potential
    of the molecules. These results reveal that the occupied states are closest to
    the gold Fermi energy, indicating that the tunneling transport through these molecules
    is analogous to hole tunneling through an insulating film.
article_processing_charge: No
article_type: letter_note
arxiv: 1
author:
- first_name: Latha
  full_name: Venkataraman, Latha
  id: 9ebb78a5-cc0d-11ee-8322-fae086a32caf
  last_name: Venkataraman
  orcid: 0000-0002-6957-6089
- first_name: Young S.
  full_name: Park, Young S.
  last_name: Park
- first_name: Adam C.
  full_name: Whalley, Adam C.
  last_name: Whalley
- first_name: Colin
  full_name: Nuckolls, Colin
  last_name: Nuckolls
- first_name: Mark S.
  full_name: Hybertsen, Mark S.
  last_name: Hybertsen
- first_name: Michael L.
  full_name: Steigerwald, Michael L.
  last_name: Steigerwald
citation:
  ama: Venkataraman L, Park YS, Whalley AC, Nuckolls C, Hybertsen MS, Steigerwald
    ML. Electronics and dhemistry:  Varying single-molecule junction conductance using
    chemical substituents. <i>Nano Letters</i>. 2007;7(2):502-506. doi:<a href="https://doi.org/10.1021/nl062923j">10.1021/nl062923j</a>
  apa: Venkataraman, L., Park, Y. S., Whalley, A. C., Nuckolls, C., Hybertsen, M.
    S., &#38; Steigerwald, M. L. (2007). Electronics and dhemistry:  Varying single-molecule
    junction conductance using chemical substituents. <i>Nano Letters</i>. American
    Chemical Society. <a href="https://doi.org/10.1021/nl062923j">https://doi.org/10.1021/nl062923j</a>
  chicago: Venkataraman, Latha, Young S. Park, Adam C. Whalley, Colin Nuckolls, Mark
    S. Hybertsen, and Michael L. Steigerwald. “Electronics and Dhemistry:  Varying
    Single-Molecule Junction Conductance Using Chemical Substituents.” <i>Nano Letters</i>.
    American Chemical Society, 2007. <a href="https://doi.org/10.1021/nl062923j">https://doi.org/10.1021/nl062923j</a>.
  ieee: L. Venkataraman, Y. S. Park, A. C. Whalley, C. Nuckolls, M. S. Hybertsen,
    and M. L. Steigerwald, “Electronics and dhemistry:  Varying single-molecule junction
    conductance using chemical substituents,” <i>Nano Letters</i>, vol. 7, no. 2.
    American Chemical Society, pp. 502–506, 2007.
  ista: Venkataraman L, Park YS, Whalley AC, Nuckolls C, Hybertsen MS, Steigerwald
    ML. 2007. Electronics and dhemistry:  Varying single-molecule junction conductance
    using chemical substituents. Nano Letters. 7(2), 502–506.
  mla: Venkataraman, Latha, et al. “Electronics and Dhemistry:  Varying Single-Molecule
    Junction Conductance Using Chemical Substituents.” <i>Nano Letters</i>, vol. 7,
    no. 2, American Chemical Society, 2007, pp. 502–06, doi:<a href="https://doi.org/10.1021/nl062923j">10.1021/nl062923j</a>.
  short: L. Venkataraman, Y.S. Park, A.C. Whalley, C. Nuckolls, M.S. Hybertsen, M.L.
    Steigerwald, Nano Letters 7 (2007) 502–506.
date_created: 2024-09-09T15:06:38Z
date_published: 2007-01-25T00:00:00Z
date_updated: 2025-01-03T11:11:01Z
day: '25'
doi: 10.1021/nl062923j
extern: '1'
external_id:
  arxiv:
  - cond-mat/0703446
  pmid:
  - '17253760'
intvolume: '         7'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/cond-mat/0703446
month: '01'
oa: 1
oa_version: Preprint
page: 502-506
pmid: 1
publication: Nano Letters
publication_identifier:
  eissn:
  - 1530-6992
  issn:
  - 1530-6984
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Electronics and dhemistry:  Varying single-molecule junction conductance using
  chemical substituents
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2007'
...
---
_id: '18336'
abstract:
- lang: eng
  text: In this paper, we address the problem of partial comparison of non-rigid objects.
    We introduce a new class of set-valued distances, related to the concept of Pareto
    optimality in economics. Such distances allow to capture intrinsic geometric similarity
    between parts of non-rigid objects, obtaining semantically meaningful comparison
    results. The numerical implementation of our method is computationally efficient
    and is similar to GMDS, a multidimensional scaling-like continuous optimization
    problem.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Alexander
  full_name: Bronstein, Alexander
  id: 58f3726e-7cba-11ef-ad8b-e6e8cb3904e6
  last_name: Bronstein
  orcid: 0000-0001-9699-8730
- first_name: Michael M.
  full_name: Bronstein, Michael M.
  last_name: Bronstein
- first_name: Alfred M.
  full_name: Bruckstein, Alfred M.
  last_name: Bruckstein
- first_name: Ron
  full_name: Kimmel, Ron
  last_name: Kimmel
citation:
  ama: 'Bronstein AM, Bronstein MM, Bruckstein AM, Kimmel R. Paretian similarity for
    partial comparison of non-rigid objects. In: <i>First International Conference
    on Scale Space and Variational Methods in Computer Vision</i>. Vol 4485. Springer
    Nature; 2007:264-275. doi:<a href="https://doi.org/10.1007/978-3-540-72823-8_23">10.1007/978-3-540-72823-8_23</a>'
  apa: 'Bronstein, A. M., Bronstein, M. M., Bruckstein, A. M., &#38; Kimmel, R. (2007).
    Paretian similarity for partial comparison of non-rigid objects. In <i>First International
    Conference on Scale Space and Variational Methods in Computer Vision</i> (Vol.
    4485, pp. 264–275). Ischia, Italy: Springer Nature. <a href="https://doi.org/10.1007/978-3-540-72823-8_23">https://doi.org/10.1007/978-3-540-72823-8_23</a>'
  chicago: Bronstein, Alex M., Michael M. Bronstein, Alfred M. Bruckstein, and Ron
    Kimmel. “Paretian Similarity for Partial Comparison of Non-Rigid Objects.” In
    <i>First International Conference on Scale Space and Variational Methods in Computer
    Vision</i>, 4485:264–75. Springer Nature, 2007. <a href="https://doi.org/10.1007/978-3-540-72823-8_23">https://doi.org/10.1007/978-3-540-72823-8_23</a>.
  ieee: A. M. Bronstein, M. M. Bronstein, A. M. Bruckstein, and R. Kimmel, “Paretian
    similarity for partial comparison of non-rigid objects,” in <i>First International
    Conference on Scale Space and Variational Methods in Computer Vision</i>, Ischia,
    Italy, 2007, vol. 4485, pp. 264–275.
  ista: 'Bronstein AM, Bronstein MM, Bruckstein AM, Kimmel R. 2007. Paretian similarity
    for partial comparison of non-rigid objects. First International Conference on
    Scale Space and Variational Methods in Computer Vision. SSVM: Scape Space and
    Variational Methods in Computer Vision, LNCS, vol. 4485, 264–275.'
  mla: Bronstein, Alex M., et al. “Paretian Similarity for Partial Comparison of Non-Rigid
    Objects.” <i>First International Conference on Scale Space and Variational Methods
    in Computer Vision</i>, vol. 4485, Springer Nature, 2007, pp. 264–75, doi:<a href="https://doi.org/10.1007/978-3-540-72823-8_23">10.1007/978-3-540-72823-8_23</a>.
  short: A.M. Bronstein, M.M. Bronstein, A.M. Bruckstein, R. Kimmel, in:, First International
    Conference on Scale Space and Variational Methods in Computer Vision, Springer
    Nature, 2007, pp. 264–275.
conference:
  end_date: 2007-06-02
  location: Ischia, Italy
  name: 'SSVM: Scape Space and Variational Methods in Computer Vision'
  start_date: 2007-05-30
date_created: 2024-10-15T11:20:54Z
date_published: 2007-06-15T00:00:00Z
date_updated: 2024-11-18T10:05:10Z
day: '15'
doi: 10.1007/978-3-540-72823-8_23
extern: '1'
intvolume: '      4485'
language:
- iso: eng
month: '06'
oa_version: None
page: 264-275
publication: First International Conference on Scale Space and Variational Methods
  in Computer Vision
publication_identifier:
  eisbn:
  - '9783540728238'
  isbn:
  - '9783540728221'
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Paretian similarity for partial comparison of non-rigid objects
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 4485
year: '2007'
...
---
_id: '18367'
abstract:
- lang: eng
  text: "We propose an efficient computational solver for eikonal equations on parametric
    three-dimensional manifolds. Our\r\napproach is based on the fast marching method
    for solving the eikonal equation in ð(n log n) steps on n grid points by\r\nnumerically
    simulating wavefront propagation. The obtuse angle splitting problem is reformulated
    as a set of small integer\r\nlinear programs, that can be solved in ð(n). Numerical
    simulations demonstrate the accuracy of the proposed algorithm."
article_processing_charge: No
article_type: original
author:
- first_name: Alexander
  full_name: Bronstein, Alexander
  id: 58f3726e-7cba-11ef-ad8b-e6e8cb3904e6
  last_name: Bronstein
  orcid: 0000-0001-9699-8730
- first_name: Michael M.
  full_name: Bronstein, Michael M.
  last_name: Bronstein
- first_name: Ron
  full_name: Kimmel, Ron
  last_name: Kimmel
citation:
  ama: Bronstein AM, Bronstein MM, Kimmel R. Weighted distance maps computation on
    parametric three-dimensional manifolds. <i>Journal of Computational Physics</i>.
    2007;225(1):771-784. doi:<a href="https://doi.org/10.1016/j.jcp.2007.01.009">10.1016/j.jcp.2007.01.009</a>
  apa: Bronstein, A. M., Bronstein, M. M., &#38; Kimmel, R. (2007). Weighted distance
    maps computation on parametric three-dimensional manifolds. <i>Journal of Computational
    Physics</i>. Elsevier. <a href="https://doi.org/10.1016/j.jcp.2007.01.009">https://doi.org/10.1016/j.jcp.2007.01.009</a>
  chicago: Bronstein, Alex M., Michael M. Bronstein, and Ron Kimmel. “Weighted Distance
    Maps Computation on Parametric Three-Dimensional Manifolds.” <i>Journal of Computational
    Physics</i>. Elsevier, 2007. <a href="https://doi.org/10.1016/j.jcp.2007.01.009">https://doi.org/10.1016/j.jcp.2007.01.009</a>.
  ieee: A. M. Bronstein, M. M. Bronstein, and R. Kimmel, “Weighted distance maps computation
    on parametric three-dimensional manifolds,” <i>Journal of Computational Physics</i>,
    vol. 225, no. 1. Elsevier, pp. 771–784, 2007.
  ista: Bronstein AM, Bronstein MM, Kimmel R. 2007. Weighted distance maps computation
    on parametric three-dimensional manifolds. Journal of Computational Physics. 225(1),
    771–784.
  mla: Bronstein, Alex M., et al. “Weighted Distance Maps Computation on Parametric
    Three-Dimensional Manifolds.” <i>Journal of Computational Physics</i>, vol. 225,
    no. 1, Elsevier, 2007, pp. 771–84, doi:<a href="https://doi.org/10.1016/j.jcp.2007.01.009">10.1016/j.jcp.2007.01.009</a>.
  short: A.M. Bronstein, M.M. Bronstein, R. Kimmel, Journal of Computational Physics
    225 (2007) 771–784.
date_created: 2024-10-15T11:20:54Z
date_published: 2007-01-20T00:00:00Z
date_updated: 2024-10-21T09:09:42Z
day: '20'
doi: 10.1016/j.jcp.2007.01.009
extern: '1'
intvolume: '       225'
issue: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: 771-784
publication: Journal of Computational Physics
publication_identifier:
  issn:
  - 0021-9991
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Weighted distance maps computation on parametric three-dimensional manifolds
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 225
year: '2007'
...
---
_id: '18389'
abstract:
- lang: eng
  text: This paper explores similarity criteria between non-rigid shapes. Broadly
    speaking, such criteria are divided into intrinsic and extrinsic, the first referring
    to the metric structure of the objects and the latter to the geometry of the shapes
    in the Euclidean space. Both criteria have their advantages and disadvantages;
    extrinsic similarity is sensitive to non-rigid deformations of the shapes, while
    intrinsic similarity is sensitive to topological noise. Here, we present an approach
    unifying both criteria in a single distance. Numerical results demonstrate the
    robustness of our approach in cases where using only extrinsic or intrinsic criteria
    fail.
article_processing_charge: No
author:
- first_name: Alexander
  full_name: Bronstein, Alexander
  id: 58f3726e-7cba-11ef-ad8b-e6e8cb3904e6
  last_name: Bronstein
  orcid: 0000-0001-9699-8730
- first_name: Michael M.
  full_name: Bronstein, Michael M.
  last_name: Bronstein
- first_name: Ron
  full_name: Kimmel, Ron
  last_name: Kimmel
citation:
  ama: 'Bronstein AM, Bronstein MM, Kimmel R. Rock, paper, and scissors: Extrinsic
    vs. intrinsic similarity of non-rigid shapes. In: <i>11th International Conference
    on Computer Vision</i>. IEEE; 2007. doi:<a href="https://doi.org/10.1109/iccv.2007.4409076">10.1109/iccv.2007.4409076</a>'
  apa: 'Bronstein, A. M., Bronstein, M. M., &#38; Kimmel, R. (2007). Rock, paper,
    and scissors: Extrinsic vs. intrinsic similarity of non-rigid shapes. In <i>11th
    International Conference on Computer Vision</i>. Rio de Janeiro, Brazil: IEEE.
    <a href="https://doi.org/10.1109/iccv.2007.4409076">https://doi.org/10.1109/iccv.2007.4409076</a>'
  chicago: 'Bronstein, Alex M., Michael M. Bronstein, and Ron Kimmel. “Rock, Paper,
    and Scissors: Extrinsic vs. Intrinsic Similarity of Non-Rigid Shapes.” In <i>11th
    International Conference on Computer Vision</i>. IEEE, 2007. <a href="https://doi.org/10.1109/iccv.2007.4409076">https://doi.org/10.1109/iccv.2007.4409076</a>.'
  ieee: 'A. M. Bronstein, M. M. Bronstein, and R. Kimmel, “Rock, paper, and scissors:
    Extrinsic vs. intrinsic similarity of non-rigid shapes,” in <i>11th International
    Conference on Computer Vision</i>, Rio de Janeiro, Brazil, 2007.'
  ista: 'Bronstein AM, Bronstein MM, Kimmel R. 2007. Rock, paper, and scissors: Extrinsic
    vs. intrinsic similarity of non-rigid shapes. 11th International Conference on
    Computer Vision. ICCV: International Conference on Computer Vision.'
  mla: 'Bronstein, Alex M., et al. “Rock, Paper, and Scissors: Extrinsic vs. Intrinsic
    Similarity of Non-Rigid Shapes.” <i>11th International Conference on Computer
    Vision</i>, IEEE, 2007, doi:<a href="https://doi.org/10.1109/iccv.2007.4409076">10.1109/iccv.2007.4409076</a>.'
  short: A.M. Bronstein, M.M. Bronstein, R. Kimmel, in:, 11th International Conference
    on Computer Vision, IEEE, 2007.
conference:
  end_date: 2007-10-21
  location: Rio de Janeiro, Brazil
  name: 'ICCV: International Conference on Computer Vision'
  start_date: 2007-10-14
date_created: 2024-10-15T11:20:54Z
date_published: 2007-10-30T00:00:00Z
date_updated: 2024-11-18T10:12:46Z
day: '30'
doi: 10.1109/iccv.2007.4409076
extern: '1'
language:
- iso: eng
month: '10'
oa_version: None
publication: 11th International Conference on Computer Vision
publication_identifier:
  isbn:
  - '9781424416301'
  issn:
  - 1550-5499
publication_status: published
publisher: IEEE
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Rock, paper, and scissors: Extrinsic vs. intrinsic similarity of non-rigid
  shapes'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2007'
...
---
_id: '18390'
abstract:
- lang: eng
  text: Symmetry and self-similarity is the cornerstone of Nature, exhibiting itself
    through the shapes of natural creations and ubiquitous laws of physics. Since
    many natural objects are symmetric, the absence of symmetry can often be an indication
    of some anomaly or abnormal behavior. Therefore, detection of asymmetries is important
    in numerous practical applications, including crystallography, medical imaging,
    and face recognition, to mention a few. Conversely, the assumption of underlying
    shape symmetry can facilitate solutions to many problems in shape reconstruction
    and analysis. Traditionally, symmetries are described as extrinsic geometric properties
    of the shape. While being adequate for rigid shapes, such a description is inappropriate
    for non-rigid ones. Extrinsic symmetry can be broken as a result of shape deformations,
    while its intrinsic symmetry is preserved. In this paper, we pose the problem
    of finding intrinsic symmetries of non-rigid shapes and propose an efficient method
    for their computation.
article_processing_charge: No
author:
- first_name: Dan
  full_name: Raviv, Dan
  last_name: Raviv
- first_name: Alexander
  full_name: Bronstein, Alexander
  id: 58f3726e-7cba-11ef-ad8b-e6e8cb3904e6
  last_name: Bronstein
  orcid: 0000-0001-9699-8730
- first_name: Michael M.
  full_name: Bronstein, Michael M.
  last_name: Bronstein
- first_name: Ron
  full_name: Kimmel, Ron
  last_name: Kimmel
citation:
  ama: 'Raviv D, Bronstein AM, Bronstein MM, Kimmel R. Symmetries of non-rigid shapes.
    In: <i>11th International Conference on Computer Vision</i>. Vol 72. IEEE; 2007.
    doi:<a href="https://doi.org/10.1109/iccv.2007.4409181">10.1109/iccv.2007.4409181</a>'
  apa: 'Raviv, D., Bronstein, A. M., Bronstein, M. M., &#38; Kimmel, R. (2007). Symmetries
    of non-rigid shapes. In <i>11th International Conference on Computer Vision</i>
    (Vol. 72). Rio de Janeiro, Brazil: IEEE. <a href="https://doi.org/10.1109/iccv.2007.4409181">https://doi.org/10.1109/iccv.2007.4409181</a>'
  chicago: Raviv, Dan, Alex M. Bronstein, Michael M. Bronstein, and Ron Kimmel. “Symmetries
    of Non-Rigid Shapes.” In <i>11th International Conference on Computer Vision</i>,
    Vol. 72. IEEE, 2007. <a href="https://doi.org/10.1109/iccv.2007.4409181">https://doi.org/10.1109/iccv.2007.4409181</a>.
  ieee: D. Raviv, A. M. Bronstein, M. M. Bronstein, and R. Kimmel, “Symmetries of
    non-rigid shapes,” in <i>11th International Conference on Computer Vision</i>,
    Rio de Janeiro, Brazil, 2007, vol. 72.
  ista: 'Raviv D, Bronstein AM, Bronstein MM, Kimmel R. 2007. Symmetries of non-rigid
    shapes. 11th International Conference on Computer Vision. ICCV: International
    Conference on Computer Vision vol. 72.'
  mla: Raviv, Dan, et al. “Symmetries of Non-Rigid Shapes.” <i>11th International
    Conference on Computer Vision</i>, vol. 72, IEEE, 2007, doi:<a href="https://doi.org/10.1109/iccv.2007.4409181">10.1109/iccv.2007.4409181</a>.
  short: D. Raviv, A.M. Bronstein, M.M. Bronstein, R. Kimmel, in:, 11th International
    Conference on Computer Vision, IEEE, 2007.
conference:
  end_date: 2007-10-21
  location: Rio de Janeiro, Brazil
  name: 'ICCV: International Conference on Computer Vision'
  start_date: 2007-10-14
date_created: 2024-10-15T11:20:54Z
date_published: 2007-12-26T00:00:00Z
date_updated: 2024-11-18T10:07:58Z
day: '26'
doi: 10.1109/iccv.2007.4409181
extern: '1'
intvolume: '        72'
language:
- iso: eng
month: '12'
oa_version: None
publication: 11th International Conference on Computer Vision
publication_identifier:
  eissn:
  - 2380-7504
  isbn:
  - '9781424416301'
  issn:
  - 1550-5499
publication_status: published
publisher: IEEE
quality_controlled: '1'
scopus_import: '1'
status: public
title: Symmetries of non-rigid shapes
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 72
year: '2007'
...
---
_id: '18420'
abstract:
- lang: eng
  text: The experience of motion sickness in a virtual environment may be measured
    through pre and postexperiment self-reported questionnaires such as the simulator
    sickness questionnaire (SSQ). Although research provides converging evidence that
    users of virtual environments can experience motion sickness, there have been
    no controlled studies to determine to what extent the user's subjective response
    is a demand characteristic resulting from pre and posttest measures. In this study,
    subjects were given either SSQ's both pre and postvirtual environment immersion,
    or only postimmersion. This technique tested for contrast effects due to demand
    characteristics in which administration of the questionnaire itself suggested
    to the participant that the virtual environment may produce motion sickness. Results
    indicate that reports of motion sickness after immersion in a virtual environment
    are much greater when both pre and postquestionnaires are given than when only
    a posttest questionnaire is used. The implications for assessments of motion sickness
    in virtual environments are discussed
article_processing_charge: No
author:
- first_name: Alexander
  full_name: Bronstein, Alexander
  id: 58f3726e-7cba-11ef-ad8b-e6e8cb3904e6
  last_name: Bronstein
  orcid: 0000-0001-9699-8730
- first_name: Michael M.
  full_name: Bronstein, Michael M.
  last_name: Bronstein
- first_name: Ron
  full_name: Kimmel, Ron
  last_name: Kimmel
citation:
  ama: Bronstein AM, Bronstein MM, Kimmel R. Calculus of nonrigid surfaces for geometry
    and texture manipulation. <i>IEEE Transactions on Visualization and Computer Graphics</i>.
    2007;13(5):902-913. doi:<a href="https://doi.org/10.1109/tvcg.2007.1041">10.1109/tvcg.2007.1041</a>
  apa: Bronstein, A. M., Bronstein, M. M., &#38; Kimmel, R. (2007). Calculus of nonrigid
    surfaces for geometry and texture manipulation. <i>IEEE Transactions on Visualization
    and Computer Graphics</i>. IEEE. <a href="https://doi.org/10.1109/tvcg.2007.1041">https://doi.org/10.1109/tvcg.2007.1041</a>
  chicago: Bronstein, Alex M., Michael M. Bronstein, and Ron Kimmel. “Calculus of
    Nonrigid Surfaces for Geometry and Texture Manipulation.” <i>IEEE Transactions
    on Visualization and Computer Graphics</i>. IEEE, 2007. <a href="https://doi.org/10.1109/tvcg.2007.1041">https://doi.org/10.1109/tvcg.2007.1041</a>.
  ieee: A. M. Bronstein, M. M. Bronstein, and R. Kimmel, “Calculus of nonrigid surfaces
    for geometry and texture manipulation,” <i>IEEE Transactions on Visualization
    and Computer Graphics</i>, vol. 13, no. 5. IEEE, pp. 902–913, 2007.
  ista: Bronstein AM, Bronstein MM, Kimmel R. 2007. Calculus of nonrigid surfaces
    for geometry and texture manipulation. IEEE Transactions on Visualization and
    Computer Graphics. 13(5), 902–913.
  mla: Bronstein, Alex M., et al. “Calculus of Nonrigid Surfaces for Geometry and
    Texture Manipulation.” <i>IEEE Transactions on Visualization and Computer Graphics</i>,
    vol. 13, no. 5, IEEE, 2007, pp. 902–13, doi:<a href="https://doi.org/10.1109/tvcg.2007.1041">10.1109/tvcg.2007.1041</a>.
  short: A.M. Bronstein, M.M. Bronstein, R. Kimmel, IEEE Transactions on Visualization
    and Computer Graphics 13 (2007) 902–913.
date_created: 2024-10-15T11:20:55Z
date_published: 2007-10-31T00:00:00Z
date_updated: 2024-12-12T12:32:22Z
day: '31'
doi: 10.1109/tvcg.2007.1041
extern: '1'
intvolume: '        13'
issue: '5'
language:
- iso: eng
month: '10'
oa_version: None
page: 902-913
publication: IEEE Transactions on Visualization and Computer Graphics
publication_identifier:
  eissn:
  - 1941-0506
  issn:
  - 1077-2626
publication_status: published
publisher: IEEE
quality_controlled: '1'
scopus_import: '1'
status: public
title: Calculus of nonrigid surfaces for geometry and texture manipulation
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2007'
...
---
_id: '128'
abstract:
- lang: eng
  text: 'A 671 nm diode laser with a mode-hop-free tuning range of 40 GHz is described.
    This long tuning range is achieved by simultaneously ramping the external cavity
    length with the laser injection current. The laser output pointing remains fixed,
    independent of its frequency because of the cover slip cavity design. This system
    is simple, economical, robust, and easy to use for spectroscopy, as we demonstrate
    with lithium vapor and lithium atom beam experiments. '
acknowledgement: "National Science Foundation\r\nThis work was supported with NSF
  Grant No. PHY-0653623. We thank Dr. W. Bickel and Dr. J. Jones for diagnostic equipment,
  K. Guerin for assistance with mechanical drawings, and M. Parker of Rincon Research
  Inc. for optics components."
article_number: '106108'
arxiv: 1
author:
- first_name: Adra
  full_name: Carr, Adra
  last_name: Carr
- first_name: Yancey
  full_name: Serchest, Yancey
  last_name: Serchest
- first_name: Scott R
  full_name: Waitukaitis, Scott R
  id: 3A1FFC16-F248-11E8-B48F-1D18A9856A87
  last_name: Waitukaitis
  orcid: 0000-0002-2299-3176
- first_name: John
  full_name: Perreault, John
  last_name: Perreault
- first_name: Vincent
  full_name: Lonij, Vincent
  last_name: Lonij
- first_name: Alexander
  full_name: Cronin, Alexander
  last_name: Cronin
citation:
  ama: Carr A, Serchest Y, Waitukaitis SR, Perreault J, Lonij V, Cronin A. Cover slip
    external cavity diode laser. <i>Review of Scientific Instruments</i>. 2007;78(10).
    doi:<a href="https://doi.org/10.1063/1.2801006">10.1063/1.2801006</a>
  apa: Carr, A., Serchest, Y., Waitukaitis, S. R., Perreault, J., Lonij, V., &#38;
    Cronin, A. (2007). Cover slip external cavity diode laser. <i>Review of Scientific
    Instruments</i>. American Institute of Physics. <a href="https://doi.org/10.1063/1.2801006">https://doi.org/10.1063/1.2801006</a>
  chicago: Carr, Adra, Yancey Serchest, Scott R Waitukaitis, John Perreault, Vincent
    Lonij, and Alexander Cronin. “Cover Slip External Cavity Diode Laser.” <i>Review
    of Scientific Instruments</i>. American Institute of Physics, 2007. <a href="https://doi.org/10.1063/1.2801006">https://doi.org/10.1063/1.2801006</a>.
  ieee: A. Carr, Y. Serchest, S. R. Waitukaitis, J. Perreault, V. Lonij, and A. Cronin,
    “Cover slip external cavity diode laser,” <i>Review of Scientific Instruments</i>,
    vol. 78, no. 10. American Institute of Physics, 2007.
  ista: Carr A, Serchest Y, Waitukaitis SR, Perreault J, Lonij V, Cronin A. 2007.
    Cover slip external cavity diode laser. Review of Scientific Instruments. 78(10),
    106108.
  mla: Carr, Adra, et al. “Cover Slip External Cavity Diode Laser.” <i>Review of Scientific
    Instruments</i>, vol. 78, no. 10, 106108, American Institute of Physics, 2007,
    doi:<a href="https://doi.org/10.1063/1.2801006">10.1063/1.2801006</a>.
  short: A. Carr, Y. Serchest, S.R. Waitukaitis, J. Perreault, V. Lonij, A. Cronin,
    Review of Scientific Instruments 78 (2007).
date_created: 2018-12-11T11:44:46Z
date_published: 2007-10-29T00:00:00Z
date_updated: 2021-01-12T06:49:35Z
day: '29'
doi: 10.1063/1.2801006
extern: '1'
external_id:
  arxiv:
  - '0708.0014'
intvolume: '        78'
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/0708.0014
month: '10'
oa: 1
oa_version: Preprint
publication: Review of Scientific Instruments
publication_status: published
publisher: American Institute of Physics
publist_id: '7925'
quality_controlled: '1'
status: public
title: Cover slip external cavity diode laser
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 78
year: '2007'
...
---
_id: '1297'
abstract:
- lang: eng
  text: In flies, the large tangential cells of the lobula plate represent an important
    processing center for visual navigation based on optic flow. Although the visual
    response properties of these cells have been well studied in blowflies, information
    on their synaptic organization is mostly lacking. Here we study the distribution
    of presynaptic release and postsynaptic inhibitory sites in the same set of cells
    in Drosophila melanogaster. By making use of transgenic tools and immunohistochemistry,
    our results suggest that HS and VS cells of Drosophila express γ-aminobutyric
    acid (GABA) receptors in their dendritic region within the lobula plate, thus
    being postsynaptic to inhibitory input there. At their axon terminals in the protocerebrum,
    both cell types express synaptobrevin, suggesting the presence of presynaptic
    specializations there. HS- and VS-cell terminals additionally show evidence for
    postsynaptic GABAergic input, superimposed on this synaptic polarity. Our findings
    are in line with the general circuit for visual motion detection and receptive
    field properties as postulated from electrophysiological and optical recordings
    in blowflies, suggesting a similar functional organization of lobula plate tangential
    cells in the two species.
author:
- first_name: Shamprasad
  full_name: Raghu, Shamprasad V
  last_name: Raghu
- first_name: Maximilian A
  full_name: Maximilian Jösch
  id: 2BD278E6-F248-11E8-B48F-1D18A9856A87
  last_name: Jösch
  orcid: 0000-0002-3937-1330
- first_name: Alexander
  full_name: Borst, Alexander
  last_name: Borst
- first_name: Dierk
  full_name: Reiff, Dierk F
  last_name: Reiff
citation:
  ama: 'Raghu S, Jösch MA, Borst A, Reiff D. Synaptic organization of lobula plate
    tangential cells in Drosophila: γ-aminobutyric acid receptors and chemical release
    sites. <i>Journal of Comparative Neurology</i>. 2007;502(4):598-610. doi:<a href="https://doi.org/10.1002/cne.21319">10.1002/cne.21319</a>'
  apa: 'Raghu, S., Jösch, M. A., Borst, A., &#38; Reiff, D. (2007). Synaptic organization
    of lobula plate tangential cells in Drosophila: γ-aminobutyric acid receptors
    and chemical release sites. <i>Journal of Comparative Neurology</i>. Wiley-Blackwell.
    <a href="https://doi.org/10.1002/cne.21319">https://doi.org/10.1002/cne.21319</a>'
  chicago: 'Raghu, Shamprasad, Maximilian A Jösch, Alexander Borst, and Dierk Reiff.
    “Synaptic Organization of Lobula Plate Tangential Cells in Drosophila: γ-Aminobutyric
    Acid Receptors and Chemical Release Sites.” <i>Journal of Comparative Neurology</i>.
    Wiley-Blackwell, 2007. <a href="https://doi.org/10.1002/cne.21319">https://doi.org/10.1002/cne.21319</a>.'
  ieee: 'S. Raghu, M. A. Jösch, A. Borst, and D. Reiff, “Synaptic organization of
    lobula plate tangential cells in Drosophila: γ-aminobutyric acid receptors and
    chemical release sites,” <i>Journal of Comparative Neurology</i>, vol. 502, no.
    4. Wiley-Blackwell, pp. 598–610, 2007.'
  ista: 'Raghu S, Jösch MA, Borst A, Reiff D. 2007. Synaptic organization of lobula
    plate tangential cells in Drosophila: γ-aminobutyric acid receptors and chemical
    release sites. Journal of Comparative Neurology. 502(4), 598–610.'
  mla: 'Raghu, Shamprasad, et al. “Synaptic Organization of Lobula Plate Tangential
    Cells in Drosophila: γ-Aminobutyric Acid Receptors and Chemical Release Sites.”
    <i>Journal of Comparative Neurology</i>, vol. 502, no. 4, Wiley-Blackwell, 2007,
    pp. 598–610, doi:<a href="https://doi.org/10.1002/cne.21319">10.1002/cne.21319</a>.'
  short: S. Raghu, M.A. Jösch, A. Borst, D. Reiff, Journal of Comparative Neurology
    502 (2007) 598–610.
date_created: 2018-12-11T11:51:13Z
date_published: 2007-06-01T00:00:00Z
date_updated: 2021-01-12T06:49:42Z
day: '01'
doi: 10.1002/cne.21319
extern: 1
intvolume: '       502'
issue: '4'
month: '06'
page: 598 - 610
publication: Journal of Comparative Neurology
publication_status: published
publisher: Wiley-Blackwell
publist_id: '5974'
quality_controlled: 0
status: public
title: 'Synaptic organization of lobula plate tangential cells in Drosophila: γ-aminobutyric
  acid receptors and chemical release sites'
type: journal_article
volume: 502
year: '2007'
...
---
_id: '1964'
abstract:
- lang: eng
  text: Complex I of respiratory chains plays a central role in cellular energy production.
    Mutations in its subunits lead to many human neurodegenerative diseases. Recently,
    a first atomic structure of the hydrophilic domain of complex I from Thermus thermophilus
    was determined. This domain represents a catalytic core of the enzyme. It consists
    of eight different subunits, contains all the redox centers, and comprises more
    than half of the entire complex. In this review, novel mechanistic implications
    of the structure are discussed, and the effects of many known mutations of complex
    I subunits are interpreted in a structural context.
author:
- first_name: Leonid A
  full_name: Leonid Sazanov
  id: 338D39FE-F248-11E8-B48F-1D18A9856A87
  last_name: Sazanov
  orcid: 0000-0002-0977-7989
citation:
  ama: 'Sazanov LA. Respiratory complex I: Mechanistic and structural insights provided
    by the crystal structure of the hydrophilic domain. <i>Biochemistry</i>. 2007;46(9):2275-2288.
    doi:<a href="https://doi.org/10.1021/bi602508x">10.1021/bi602508x</a>'
  apa: 'Sazanov, L. A. (2007). Respiratory complex I: Mechanistic and structural insights
    provided by the crystal structure of the hydrophilic domain. <i>Biochemistry</i>.
    ACS. <a href="https://doi.org/10.1021/bi602508x">https://doi.org/10.1021/bi602508x</a>'
  chicago: 'Sazanov, Leonid A. “Respiratory Complex I: Mechanistic and Structural
    Insights Provided by the Crystal Structure of the Hydrophilic Domain.” <i>Biochemistry</i>.
    ACS, 2007. <a href="https://doi.org/10.1021/bi602508x">https://doi.org/10.1021/bi602508x</a>.'
  ieee: 'L. A. Sazanov, “Respiratory complex I: Mechanistic and structural insights
    provided by the crystal structure of the hydrophilic domain,” <i>Biochemistry</i>,
    vol. 46, no. 9. ACS, pp. 2275–2288, 2007.'
  ista: 'Sazanov LA. 2007. Respiratory complex I: Mechanistic and structural insights
    provided by the crystal structure of the hydrophilic domain. Biochemistry. 46(9),
    2275–2288.'
  mla: 'Sazanov, Leonid A. “Respiratory Complex I: Mechanistic and Structural Insights
    Provided by the Crystal Structure of the Hydrophilic Domain.” <i>Biochemistry</i>,
    vol. 46, no. 9, ACS, 2007, pp. 2275–88, doi:<a href="https://doi.org/10.1021/bi602508x">10.1021/bi602508x</a>.'
  short: L.A. Sazanov, Biochemistry 46 (2007) 2275–2288.
date_created: 2018-12-11T11:54:57Z
date_published: 2007-03-06T00:00:00Z
date_updated: 2021-01-12T06:54:23Z
day: '06'
doi: 10.1021/bi602508x
extern: 1
intvolume: '        46'
issue: '9'
month: '03'
page: 2275 - 2288
publication: Biochemistry
publication_status: published
publisher: ACS
publist_id: '5118'
quality_controlled: 0
status: public
title: 'Respiratory complex I: Mechanistic and structural insights provided by the
  crystal structure of the hydrophilic domain'
type: journal_article
volume: 46
year: '2007'
...
---
_id: '1965'
abstract:
- lang: eng
  text: Respiratory complex I (NADH:ubiquinone oxidoreductase) is an L-shaped multisubunit
    protein assembly consisting of a hydrophobic membrane arm and a hydrophilic peripheral
    arm. It catalyses the transfer of two electrons from NADH to quinone coupled to
    the translocation of four protons across the membrane. Although we have solved
    recently the crystal structure of the peripheral arm, the structure of the complete
    enzyme and the coupling mechanism are not yet known. The membrane domain of Escherichia
    coli complex I consists of seven different subunits with total molecular mass
    of 258 kDa. It is significantly more stable than the whole enzyme, which allowed
    us to obtain well-ordered two-dimensional crystals of the domain, belonging to
    the space group p22121. Comparison of the projection map of negatively stained
    crystals with previously published low-resolution structures indicated that the
    characteristic curved shape of the membrane domain is remarkably well conserved
    between bacterial and mitochondrial enzymes, helping us to interpret projection
    maps in the context of the intact complex. Two pronounced stain-excluding densities
    at the distal end of the membrane domain are likely to represent the two large
    antiporter-like subunits NuoL and NuoM. Cryo-electron microscopy on frozen-hydrated
    crystals allowed us to calculate a projection map at 8 Å resolution. About 60
    transmembrane α-helices, both perpendicular to the membrane plane and tilted,
    are present within one membrane domain, which is consistent with secondary structure
    predictions. A possible binding site and access channel for quinone are found
    at the interface with the peripheral arm. Tentative assignment of individual subunits
    to the features of the map has been made. The location of subunits NuoL and NuoM
    at substantial distance from the peripheral arm, which contains all the redox
    centres of the complex, indicates that conformational changes are likely to play
    a role in the mechanism of coupling between electron transfer and proton pumping.
author:
- first_name: Ekaterina
  full_name: Baranova, Ekaterina A
  last_name: Baranova
- first_name: Peter
  full_name: Holt, Peter J
  last_name: Holt
- first_name: Leonid A
  full_name: Leonid Sazanov
  id: 338D39FE-F248-11E8-B48F-1D18A9856A87
  last_name: Sazanov
  orcid: 0000-0002-0977-7989
citation:
  ama: Baranova E, Holt P, Sazanov LA. Projection structure of the membrane domain
    of Escherichia coli respiratory Complex I at 8 Å resolution. <i>Journal of Molecular
    Biology</i>. 2007;366(1):140-154. doi:<a href="https://doi.org/10.1016/j.jmb.2006.11.026">10.1016/j.jmb.2006.11.026</a>
  apa: Baranova, E., Holt, P., &#38; Sazanov, L. A. (2007). Projection structure of
    the membrane domain of Escherichia coli respiratory Complex I at 8 Å resolution.
    <i>Journal of Molecular Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.jmb.2006.11.026">https://doi.org/10.1016/j.jmb.2006.11.026</a>
  chicago: Baranova, Ekaterina, Peter Holt, and Leonid A Sazanov. “Projection Structure
    of the Membrane Domain of Escherichia Coli Respiratory Complex I at 8 Å Resolution.”
    <i>Journal of Molecular Biology</i>. Elsevier, 2007. <a href="https://doi.org/10.1016/j.jmb.2006.11.026">https://doi.org/10.1016/j.jmb.2006.11.026</a>.
  ieee: E. Baranova, P. Holt, and L. A. Sazanov, “Projection structure of the membrane
    domain of Escherichia coli respiratory Complex I at 8 Å resolution,” <i>Journal
    of Molecular Biology</i>, vol. 366, no. 1. Elsevier, pp. 140–154, 2007.
  ista: Baranova E, Holt P, Sazanov LA. 2007. Projection structure of the membrane
    domain of Escherichia coli respiratory Complex I at 8 Å resolution. Journal of
    Molecular Biology. 366(1), 140–154.
  mla: Baranova, Ekaterina, et al. “Projection Structure of the Membrane Domain of
    Escherichia Coli Respiratory Complex I at 8 Å Resolution.” <i>Journal of Molecular
    Biology</i>, vol. 366, no. 1, Elsevier, 2007, pp. 140–54, doi:<a href="https://doi.org/10.1016/j.jmb.2006.11.026">10.1016/j.jmb.2006.11.026</a>.
  short: E. Baranova, P. Holt, L.A. Sazanov, Journal of Molecular Biology 366 (2007)
    140–154.
date_created: 2018-12-11T11:54:57Z
date_published: 2007-02-09T00:00:00Z
date_updated: 2021-01-12T06:54:23Z
day: '09'
doi: 10.1016/j.jmb.2006.11.026
extern: 1
intvolume: '       366'
issue: '1'
month: '02'
page: 140 - 154
publication: Journal of Molecular Biology
publication_status: published
publisher: Elsevier
publist_id: '5119'
quality_controlled: 0
status: public
title: Projection structure of the membrane domain of Escherichia coli respiratory
  Complex I at 8 Å resolution
type: journal_article
volume: 366
year: '2007'
...
---
_id: '1969'
abstract:
- lang: eng
  text: Respiratory complex I catalyses the transfer of electrons from NADH to quinone
    coupled to the translocation of protons across the membrane. The mechanism of
    coupling and the structure of the complete enzyme are not known. The membrane
    domain of the complex contains three similar antiporter-like subunits NuoL/M/N,
    probably involved in proton pumping. We have previously shown that subunits NuoL/M
    can be removed from the rest of the complex, suggesting their location at the
    distal end of the membrane domain. Here, using electron microscopy and single
    particle analysis, we show that subunits NuoL and M jointly occupy a distal half
    of the membrane domain, separated by about 10 nm from the interface with the peripheral
    arm. This indicates that coupling mechanism of complex I is likely to involve
    long range conformational changes.
author:
- first_name: Ekaterina
  full_name: Baranova, Ekaterina A
  last_name: Baranova
- first_name: David
  full_name: Morgan, David J
  last_name: Morgan
- first_name: Leonid A
  full_name: Leonid Sazanov
  id: 338D39FE-F248-11E8-B48F-1D18A9856A87
  last_name: Sazanov
  orcid: 0000-0002-0977-7989
citation:
  ama: Baranova E, Morgan D, Sazanov LA. Single particle analysis confirms distal
    location of subunits NuoL and NuoM in Escherichia coli complex I. <i>Journal of
    Structural Biology</i>. 2007;159(2 SPEC. ISS.):238-242. doi:<a href="https://doi.org/10.1016/j.jsb.2007.01.009">10.1016/j.jsb.2007.01.009</a>
  apa: Baranova, E., Morgan, D., &#38; Sazanov, L. A. (2007). Single particle analysis
    confirms distal location of subunits NuoL and NuoM in Escherichia coli complex
    I. <i>Journal of Structural Biology</i>. Academic Press. <a href="https://doi.org/10.1016/j.jsb.2007.01.009">https://doi.org/10.1016/j.jsb.2007.01.009</a>
  chicago: Baranova, Ekaterina, David Morgan, and Leonid A Sazanov. “Single Particle
    Analysis Confirms Distal Location of Subunits NuoL and NuoM in Escherichia Coli
    Complex I.” <i>Journal of Structural Biology</i>. Academic Press, 2007. <a href="https://doi.org/10.1016/j.jsb.2007.01.009">https://doi.org/10.1016/j.jsb.2007.01.009</a>.
  ieee: E. Baranova, D. Morgan, and L. A. Sazanov, “Single particle analysis confirms
    distal location of subunits NuoL and NuoM in Escherichia coli complex I,” <i>Journal
    of Structural Biology</i>, vol. 159, no. 2 SPEC. ISS. Academic Press, pp. 238–242,
    2007.
  ista: Baranova E, Morgan D, Sazanov LA. 2007. Single particle analysis confirms
    distal location of subunits NuoL and NuoM in Escherichia coli complex I. Journal
    of Structural Biology. 159(2 SPEC. ISS.), 238–242.
  mla: Baranova, Ekaterina, et al. “Single Particle Analysis Confirms Distal Location
    of Subunits NuoL and NuoM in Escherichia Coli Complex I.” <i>Journal of Structural
    Biology</i>, vol. 159, no. 2 SPEC. ISS., Academic Press, 2007, pp. 238–42, doi:<a
    href="https://doi.org/10.1016/j.jsb.2007.01.009">10.1016/j.jsb.2007.01.009</a>.
  short: E. Baranova, D. Morgan, L.A. Sazanov, Journal of Structural Biology 159 (2007)
    238–242.
date_created: 2018-12-11T11:54:58Z
date_published: 2007-08-01T00:00:00Z
date_updated: 2021-01-12T06:54:24Z
day: '01'
doi: 10.1016/j.jsb.2007.01.009
extern: 1
intvolume: '       159'
issue: 2 SPEC. ISS.
month: '08'
page: 238 - 242
publication: Journal of Structural Biology
publication_status: published
publisher: Academic Press
publist_id: '5117'
quality_controlled: 0
status: public
title: Single particle analysis confirms distal location of subunits NuoL and NuoM
  in Escherichia coli complex I
type: journal_article
volume: 159
year: '2007'
...
---
_id: '11115'
abstract:
- lang: eng
  text: The formation of the nuclear envelope (NE) around chromatin is a major membrane-remodelling
    event that occurs during cell division of metazoa. It is unclear whether the nuclear
    membrane reforms by the fusion of NE fragments or if it re-emerges from an intact
    tubular network of the endoplasmic reticulum (ER). Here, we show that NE formation
    and expansion requires a tubular ER network and occurs efficiently in the presence
    of the membrane fusion inhibitor GTPγS. Chromatin recruitment of membranes, which
    is initiated by tubule-end binding, followed by the formation, expansion and sealing
    of flat membrane sheets, is mediated by DNA-binding proteins residing in the ER.
    Thus, chromatin plays an active role in reshaping of the ER during NE formation.
article_processing_charge: No
article_type: original
author:
- first_name: Daniel J.
  full_name: Anderson, Daniel J.
  last_name: Anderson
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: Anderson DJ, Hetzer M. Nuclear envelope formation by chromatin-mediated reorganization
    of the endoplasmic reticulum. <i>Nature Cell Biology</i>. 2007;9(10):1160-1166.
    doi:<a href="https://doi.org/10.1038/ncb1636">10.1038/ncb1636</a>
  apa: Anderson, D. J., &#38; Hetzer, M. (2007). Nuclear envelope formation by chromatin-mediated
    reorganization of the endoplasmic reticulum. <i>Nature Cell Biology</i>. Springer
    Nature. <a href="https://doi.org/10.1038/ncb1636">https://doi.org/10.1038/ncb1636</a>
  chicago: Anderson, Daniel J., and Martin Hetzer. “Nuclear Envelope Formation by
    Chromatin-Mediated Reorganization of the Endoplasmic Reticulum.” <i>Nature Cell
    Biology</i>. Springer Nature, 2007. <a href="https://doi.org/10.1038/ncb1636">https://doi.org/10.1038/ncb1636</a>.
  ieee: D. J. Anderson and M. Hetzer, “Nuclear envelope formation by chromatin-mediated
    reorganization of the endoplasmic reticulum,” <i>Nature Cell Biology</i>, vol.
    9, no. 10. Springer Nature, pp. 1160–1166, 2007.
  ista: Anderson DJ, Hetzer M. 2007. Nuclear envelope formation by chromatin-mediated
    reorganization of the endoplasmic reticulum. Nature Cell Biology. 9(10), 1160–1166.
  mla: Anderson, Daniel J., and Martin Hetzer. “Nuclear Envelope Formation by Chromatin-Mediated
    Reorganization of the Endoplasmic Reticulum.” <i>Nature Cell Biology</i>, vol.
    9, no. 10, Springer Nature, 2007, pp. 1160–66, doi:<a href="https://doi.org/10.1038/ncb1636">10.1038/ncb1636</a>.
  short: D.J. Anderson, M. Hetzer, Nature Cell Biology 9 (2007) 1160–1166.
date_created: 2022-04-07T07:56:04Z
date_published: 2007-09-09T00:00:00Z
date_updated: 2024-10-14T11:30:08Z
day: '09'
doi: 10.1038/ncb1636
extern: '1'
external_id:
  pmid:
  - '17828249'
intvolume: '         9'
issue: '10'
keyword:
- Cell Biology
language:
- iso: eng
month: '09'
oa_version: None
page: 1160-1166
pmid: 1
publication: Nature Cell Biology
publication_identifier:
  eissn:
  - 1476-4679
  issn:
  - 1465-7392
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Nuclear envelope formation by chromatin-mediated reorganization of the endoplasmic
  reticulum
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 9
year: '2007'
...
---
_id: '11116'
abstract:
- lang: eng
  text: The metazoan nuclear envelope (NE) breaks down and re-forms during each cell
    cycle. Nuclear pore complexes (NPCs), which allow nucleocytoplasmic transport
    during interphase, assemble into the re-forming NE at the end of mitosis. Using
    in vitro NE assembly, we show that the vertebrate homologue of MEL-28 (maternal
    effect lethal), a recently discovered NE component in Caenorhabditis elegans,
    functions in postmitotic NPC assembly. MEL-28 interacts with the Nup107–160 complex
    (Nup for nucleoporin), an important building block of the NPC, and is essential
    for the recruitment of the Nup107–160 complex to chromatin. We suggest that MEL-28
    acts as a seeding point for NPC assembly.
article_processing_charge: No
article_type: original
author:
- first_name: Cerstin
  full_name: Franz, Cerstin
  last_name: Franz
- first_name: Rudolf
  full_name: Walczak, Rudolf
  last_name: Walczak
- first_name: Sevil
  full_name: Yavuz, Sevil
  last_name: Yavuz
- first_name: Rachel
  full_name: Santarella, Rachel
  last_name: Santarella
- first_name: Marc
  full_name: Gentzel, Marc
  last_name: Gentzel
- first_name: Peter
  full_name: Askjaer, Peter
  last_name: Askjaer
- first_name: Vincent
  full_name: Galy, Vincent
  last_name: Galy
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
- first_name: Iain W
  full_name: Mattaj, Iain W
  last_name: Mattaj
- first_name: Wolfram
  full_name: Antonin, Wolfram
  last_name: Antonin
citation:
  ama: Franz C, Walczak R, Yavuz S, et al. MEL‐28/ELYS is required for the recruitment
    of nucleoporins to chromatin and postmitotic nuclear pore complex assembly. <i>EMBO
    reports</i>. 2007;8(2):165-172. doi:<a href="https://doi.org/10.1038/sj.embor.7400889">10.1038/sj.embor.7400889</a>
  apa: Franz, C., Walczak, R., Yavuz, S., Santarella, R., Gentzel, M., Askjaer, P.,
    … Antonin, W. (2007). MEL‐28/ELYS is required for the recruitment of nucleoporins
    to chromatin and postmitotic nuclear pore complex assembly. <i>EMBO Reports</i>.
    EMBO. <a href="https://doi.org/10.1038/sj.embor.7400889">https://doi.org/10.1038/sj.embor.7400889</a>
  chicago: Franz, Cerstin, Rudolf Walczak, Sevil Yavuz, Rachel Santarella, Marc Gentzel,
    Peter Askjaer, Vincent Galy, Martin Hetzer, Iain W Mattaj, and Wolfram Antonin.
    “MEL‐28/ELYS Is Required for the Recruitment of Nucleoporins to Chromatin and
    Postmitotic Nuclear Pore Complex Assembly.” <i>EMBO Reports</i>. EMBO, 2007. <a
    href="https://doi.org/10.1038/sj.embor.7400889">https://doi.org/10.1038/sj.embor.7400889</a>.
  ieee: C. Franz <i>et al.</i>, “MEL‐28/ELYS is required for the recruitment of nucleoporins
    to chromatin and postmitotic nuclear pore complex assembly,” <i>EMBO reports</i>,
    vol. 8, no. 2. EMBO, pp. 165–172, 2007.
  ista: Franz C, Walczak R, Yavuz S, Santarella R, Gentzel M, Askjaer P, Galy V, Hetzer
    M, Mattaj IW, Antonin W. 2007. MEL‐28/ELYS is required for the recruitment of
    nucleoporins to chromatin and postmitotic nuclear pore complex assembly. EMBO
    reports. 8(2), 165–172.
  mla: Franz, Cerstin, et al. “MEL‐28/ELYS Is Required for the Recruitment of Nucleoporins
    to Chromatin and Postmitotic Nuclear Pore Complex Assembly.” <i>EMBO Reports</i>,
    vol. 8, no. 2, EMBO, 2007, pp. 165–72, doi:<a href="https://doi.org/10.1038/sj.embor.7400889">10.1038/sj.embor.7400889</a>.
  short: C. Franz, R. Walczak, S. Yavuz, R. Santarella, M. Gentzel, P. Askjaer, V.
    Galy, M. Hetzer, I.W. Mattaj, W. Antonin, EMBO Reports 8 (2007) 165–172.
date_created: 2022-04-07T07:56:13Z
date_published: 2007-01-19T00:00:00Z
date_updated: 2022-07-18T08:56:40Z
day: '19'
doi: 10.1038/sj.embor.7400889
extern: '1'
external_id:
  pmid:
  - '17235358'
intvolume: '         8'
issue: '2'
keyword:
- Genetics
- Molecular Biology
- Biochemistry
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1038/sj.embor.7400889
month: '01'
oa: 1
oa_version: Published Version
page: 165-172
pmid: 1
publication: EMBO reports
publication_identifier:
  eissn:
  - 1469-3178
  issn:
  - 1469-221X
publication_status: published
publisher: EMBO
quality_controlled: '1'
scopus_import: '1'
status: public
title: MEL‐28/ELYS is required for the recruitment of nucleoporins to chromatin and
  postmitotic nuclear pore complex assembly
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 8
year: '2007'
...
---
_id: '1035'
abstract:
- lang: eng
  text: We explore the rich internal structure of Cs2 Feshbach molecules. Pure ultracold
    molecular samples are prepared in a CO2 -laser trap, and a multitude of weakly
    bound states is populated by elaborate magnetic-field ramping techniques. Our
    methods use different Feshbach resonances as input ports and various internal
    level crossings for controlled state transfer. We populate higher partial-wave
    states of up to eight units of rotational angular momentum (l -wave states). We
    investigate the molecular structure by measurements of the magnetic moments for
    various states. Avoided level crossings between different molecular states are
    characterized through the changes in magnetic moment and by a Landau-Zener tunneling
    method. Based on microwave spectroscopy, we present a precise measurement of the
    magnetic-field-dependent binding energy of the weakly bound s -wave state that
    is responsible for the large background scattering length of Cs. This state is
    of particular interest because of its quantum-halo character.
acknowledgement: The authors thank E. Tiesinga, P. Julienne, and C. Williams for providing
  invaluable theoretical input and J. Hutson and A. Simoni for helpful discussions.
  The authors acknowledge support by the Austrian Science Fund (FWF) within SFB 15
  (project part 16) and by the European Union within the Cold Molecules TMR Network
  under Contract No. HPRN-CT-2002-00290. One of the authors (M.M.) acknowledges support
  within the Ph.D. program DOC of the Austrian Academy of Sciences, and two of the
  authors (F.F., C.C.) acknowledge support within the Lise Meitner program of the
  FWF. One of the authors (S.K.) is supported by the European Community, Marie Curie
  Intra-European program.
article_processing_charge: No
author:
- first_name: Michael
  full_name: Mark, Michael
  last_name: Mark
- first_name: Francesca
  full_name: Ferlaino, Francesca
  last_name: Ferlaino
- first_name: Steven
  full_name: Knoop, Steven
  last_name: Knoop
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
- first_name: Tobias
  full_name: Kraemer, Tobias
  last_name: Kraemer
- first_name: Cheng
  full_name: Chin, Cheng
  last_name: Chin
- first_name: Hanns
  full_name: Nägerl, Hanns
  last_name: Nägerl
- first_name: Rudolf
  full_name: Grimm, Rudolf
  last_name: Grimm
citation:
  ama: Mark M, Ferlaino F, Knoop S, et al. Spectroscopy of ultracold trapped cesium
    Feshbach molecules. <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>.
    2007;76(4). doi:<a href="https://doi.org/10.1103/PhysRevA.76.042514">10.1103/PhysRevA.76.042514</a>
  apa: Mark, M., Ferlaino, F., Knoop, S., Danzl, J. G., Kraemer, T., Chin, C., … Grimm,
    R. (2007). Spectroscopy of ultracold trapped cesium Feshbach molecules. <i>Physical
    Review A - Atomic, Molecular, and Optical Physics</i>. American Physical Society.
    <a href="https://doi.org/10.1103/PhysRevA.76.042514">https://doi.org/10.1103/PhysRevA.76.042514</a>
  chicago: Mark, Michael, Francesca Ferlaino, Steven Knoop, Johann G Danzl, Tobias
    Kraemer, Cheng Chin, Hanns Nägerl, and Rudolf Grimm. “Spectroscopy of Ultracold
    Trapped Cesium Feshbach Molecules.” <i>Physical Review A - Atomic, Molecular,
    and Optical Physics</i>. American Physical Society, 2007. <a href="https://doi.org/10.1103/PhysRevA.76.042514">https://doi.org/10.1103/PhysRevA.76.042514</a>.
  ieee: M. Mark <i>et al.</i>, “Spectroscopy of ultracold trapped cesium Feshbach
    molecules,” <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>,
    vol. 76, no. 4. American Physical Society, 2007.
  ista: Mark M, Ferlaino F, Knoop S, Danzl JG, Kraemer T, Chin C, Nägerl H, Grimm
    R. 2007. Spectroscopy of ultracold trapped cesium Feshbach molecules. Physical
    Review A - Atomic, Molecular, and Optical Physics. 76(4).
  mla: Mark, Michael, et al. “Spectroscopy of Ultracold Trapped Cesium Feshbach Molecules.”
    <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>, vol. 76, no.
    4, American Physical Society, 2007, doi:<a href="https://doi.org/10.1103/PhysRevA.76.042514">10.1103/PhysRevA.76.042514</a>.
  short: M. Mark, F. Ferlaino, S. Knoop, J.G. Danzl, T. Kraemer, C. Chin, H. Nägerl,
    R. Grimm, Physical Review A - Atomic, Molecular, and Optical Physics 76 (2007).
date_created: 2018-12-11T11:49:48Z
date_published: 2007-10-25T00:00:00Z
date_updated: 2021-01-12T06:47:49Z
day: '25'
doi: 10.1103/PhysRevA.76.042514
extern: '1'
intvolume: '        76'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/0706.1041
month: '10'
oa: 1
oa_version: None
publication: Physical Review A - Atomic, Molecular, and Optical Physics
publication_status: published
publisher: American Physical Society
publist_id: '6354'
status: public
title: Spectroscopy of ultracold trapped cesium Feshbach molecules
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 76
year: '2007'
...
