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74 Publications

2024 | Journal Article | IST-REx-ID: 15009 | OA
Chromosome-level assembly of Artemia franciscana sheds light on sex chromosome differentiation
V.K. Bett, A. Macon, B. Vicoso, M.N. Elkrewi, Genome Biology and Evolution 16 (2024).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
2024 | Research Data | IST-REx-ID: 14705 | OA [Published Version] View | Files available | DOI
 
2023 | Journal Article | IST-REx-ID: 11479 | OA
Ten years of demographic modelling of divergence and speciation in the sea
A. De Jode, A. Le Moan, K. Johannesson, R. Faria, S. Stankowski, A.M. Westram, R.K. Butlin, M. Rafajlović, C. Fraisse, Evolutionary Applications 16 (2023) 542–559.
[Published Version] View | Files available | DOI | WoS
 
2023 | Journal Article | IST-REx-ID: 13260 | OA
Selection on the fly: Short-term adaptation to an altered sexual selection regime in Drosophila pseudoobscura
C. de Castro Barbosa Rodrigues Barata, R.R. Snook, M.G. Ritchie, C. Kosiol, Genome Biology and Evolution 15 (2023).
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2023 | Journal Article | IST-REx-ID: 12521 | OA
Slower-X: Reduced efficiency of selection in the early stages of X chromosome evolution
A. Mrnjavac, K. Khudiakova, N.H. Barton, B. Vicoso, Evolution Letters 7 (2023).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2023 | Journal Article | IST-REx-ID: 14604 | OA
The X chromosome of insects likely predates the origin of class Insecta
M.A. Toups, B. Vicoso, Evolution 77 (2023) 2504–2511.
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2023 | Research Data Reference | IST-REx-ID: 14616 | OA [Published Version] View | Files available | DOI | Download Published Version (ext.)
 
2023 | Research Data Reference | IST-REx-ID: 14617 | OA [Published Version] View | Files available | DOI | Download Published Version (ext.)
 
2023 | Thesis | IST-REx-ID: 14058 | OA
The molecular basis of sexual dimorphism: Experimental and theoretical characterization of phenotypic, transcriptomic and genetic patterns of sex-specific adaptation
G. Puixeu Sala, The Molecular Basis of Sexual Dimorphism: Experimental and Theoretical Characterization of Phenotypic, Transcriptomic and Genetic Patterns of Sex-Specific Adaptation, Institute of Science and Technology Austria, 2023.
[Published Version] View | Files available | DOI
 
2023 | Journal Article | IST-REx-ID: 14077 | OA
Sex-specific estimation of cis and trans regulation of gene expression in heads and gonads of Drosophila melanogaster
G. Puixeu Sala, A. Macon, B. Vicoso, G3: Genes, Genomes, Genetics 13 (2023).
[Published Version] View | Files available | DOI | WoS
 
 
2023 | Journal Article | IST-REx-ID: 14742 | OA
The impact of chromosomal rearrangements in speciation: From micro- to macroevolution
K. Lucek, M.D. Giménez, M. Joron, M. Rafajlović, J.B. Searle, N. Walden, A.M. Westram, R. Faria, Cold Spring Harbor Perspectives in Biology 15 (2023).
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2023 | Journal Article | IST-REx-ID: 14613 | OA
The scorpionfly (Panorpa cognata) genome highlights conserved and derived features of the peculiar dipteran X chromosome
C. Lasne, M.N. Elkrewi, M.A. Toups, L.A. Layana Franco, A. Macon, B. Vicoso, Molecular Biology and Evolution 40 (2023).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
2023 | Research Data | IST-REx-ID: 14614 | OA [Published Version] View | Files available | DOI
 
2022 | Journal Article | IST-REx-ID: 10767 | OA
Novel patterns of expression and recruitment of new genes on the t-haplotype, a mouse selfish chromosome
R.K. Kelemen, M.N. Elkrewi, A.K. Lindholm, B. Vicoso, Proceedings of the Royal Society B: Biological Sciences 289 (2022) 20211985.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2022 | Journal Article | IST-REx-ID: 10926 | OA
Very short mountings are enough for sperm transfer in Littorina saxatilis
S. Perini, R. Butlin, A.M. Westram, K. Johannesson, Journal of Molluscan Studies 88 (2022).
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2022 | Journal Article | IST-REx-ID: 11334 | OA
Parthenogenesis in Darevskia lizards: A rare outcome of common hybridization, not a common outcome of rare hybridization
S. Freitas, A.M. Westram, T. Schwander, M. Arakelyan, Ç. Ilgaz, Y. Kumlutas, D.J. Harris, M.A. Carretero, R.K. Butlin, Evolution 76 (2022) 899–914.
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2022 | Journal Article | IST-REx-ID: 11546 | OA
Inversions and parallel evolution
A.M. Westram, R. Faria, K. Johannesson, R. Butlin, N.H. Barton, Philosophical Transactions of the Royal Society B: Biological Sciences 377 (2022).
[Published Version] View | Files available | DOI | WoS
 
2022 | Journal Article | IST-REx-ID: 11703 | OA [Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2022 | Journal Article | IST-REx-ID: 12248 | OA
ZW sex-chromosome evolution and contagious parthenogenesis in Artemia brine shrimp
M.N. Elkrewi, U. Khauratovich, M.A. Toups, V.K. Bett, A. Mrnjavac, A. Macon, C. Fraisse, L. Sax, A.K. Huylmans, F. Hontoria, B. Vicoso, Genetics 222 (2022).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
 
2021 | Journal Article | IST-REx-ID: 8708 | OA
How do species barriers decay? Concordance and local introgression in mosaic hybrid zones of mussels
A. Simon, C. Fraisse, T. El Ayari, C. Liautard‐Haag, P. Strelkov, J.J. Welch, N. Bierne, Journal of Evolutionary Biology 34 (2021) 208–223.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS | PubMed | Europe PMC
 
2021 | Journal Article | IST-REx-ID: 9908 | OA [Published Version] View | Files available | DOI | WoS
 
2021 | Journal Article | IST-REx-ID: 10167 | OA
Schistosome W-Linked genes inform temporal dynamics of sex chromosome evolution and suggest candidate for sex determination
M.N. Elkrewi, M.A. Moldovan, M.A.L. Picard, B. Vicoso, Molecular Biology and Evolution (2021).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2021 | Journal Article | IST-REx-ID: 10838 | OA
Using replicate hybrid zones to understand the genomic basis of adaptive divergence
A.M. Westram, R. Faria, K. Johannesson, R. Butlin, Molecular Ecology 30 (2021) 3797–3814.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2021 | Journal Article | IST-REx-ID: 10166 | OA
Transitions to asexuality and evolution of gene expression in Artemia brine shrimp
A.K. Huylmans, A. Macon, F. Hontoria, B. Vicoso, Proceedings of the Royal Society B: Biological Sciences 288 (2021).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
 
2020 | Research Data Reference | IST-REx-ID: 9799 | OA [Published Version] View | Files available | DOI | Download Published Version (ext.)
 
2020 | Research Data Reference | IST-REx-ID: 9798 | OA [Published Version] View | Files available | DOI | Download Published Version (ext.)
 
2020 | Journal Article | IST-REx-ID: 8099 | OA
Disagreement in FST estimators: A case study from sex chromosomes
W.J. Gammerdinger, M.A. Toups, B. Vicoso, Molecular Ecology Resources 20 (2020) 1517–1525.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2019 | Journal Article | IST-REx-ID: 6467 | OA
The distribution of epistasis on simple fitness landscapes
C. Fraisse, J.J. Welch, Biology Letters 15 (2019).
[Published Version] View | Files available | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC
 
2019 | Journal Article | IST-REx-ID: 6658 | OA
Haploid selection drives new gene male germline expression
J. Raices, P. Otto, M. Vibranovski, Genome Research 29 (2019) 1115–1122.
[Published Version] View | Files available | DOI | WoS
 
2019 | Journal Article | IST-REx-ID: 6710 | OA
Sexual dimorphism and rapid turnover in gene expression in pre-reproductive seedlings of a dioecious herb
G. Cossard, M.A. Toups, J. Pannell, Annals of Botany 123 (2019) 1119–1131.
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2019 | Journal Article | IST-REx-ID: 6755 | OA
Dosage compensation throughout the Schistosoma mansoni lifecycle: Specific chromatin landscape of the Z chromosome
M.A.L. Picard, B. Vicoso, D. Roquis, I. Bulla, R.C. Augusto, N. Arancibia, C. Grunau, J. Boissier, C. Cosseau, Genome Biology and Evolution 11 (2019) 1909–1922.
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2019 | Journal Article | IST-REx-ID: 6821 | OA
Diurnal variation in opsin expression and common housekeeping genes necessitates comprehensive normalization methods for quantitative real-time PCR analyses
M.R. Yourick, B.A. Sandkam, W.J. Gammerdinger, D. Escobar-Camacho, S.P. Nandamuri, F.E. Clark, B. Joyce, M.A. Conte, T.D. Kocher, K.L. Carleton, Molecular Ecology Resources 19 (2019) 1447–1460.
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2019 | Journal Article | IST-REx-ID: 6831 | OA
Variation in sexual dimorphism in a wind-pollinated plant: The influence of geographical context and life-cycle dynamics
G. Puixeu Sala, M. Pickup, D. Field, S.C.H. Barrett, New Phytologist 224 (2019) 1108–1120.
[Published Version] View | Files available | DOI | WoS
 
2019 | Research Data Reference | IST-REx-ID: 9803 | OA [Published Version] View | Files available | DOI | Download Published Version (ext.)
 
2019 | Journal Article | IST-REx-ID: 6983 | OA
Clustering of activated CD8 T cells around Malaria-infected hepatocytes is rapid and is driven by antigen-specific cells
R.K. Kelemen, H. Rajakaruna, I. Cockburn, V. Ganusov, Frontiers in Immunology 10 (2019).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2019 | Journal Article | IST-REx-ID: 7146
Molecular and evolutionary dynamics of animal sex-chromosome turnover
B. Vicoso, Nature Ecology & Evolution 3 (2019) 1632–1641.
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2019 | Journal Article | IST-REx-ID: 7421
A reciprocal translocation radically reshapes sex‐linked inheritance in the common frog
M.A. Toups, N. Rodrigues, N. Perrin, M. Kirkpatrick, Molecular Ecology 28 (2019) 1877–1889.
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2019 | Journal Article | IST-REx-ID: 7400 | OA
Early sex-chromosome evolution in the diploid dioecious plant Mercurialis annua
P. Veltsos, K.E. Ridout, M.A. Toups, S.C. González-Martínez, A. Muyle, O. Emery, P. Rastas, V. Hudzieczek, R. Hobza, B. Vyskot, G.A.B. Marais, D.A. Filatov, J.R. Pannell, Genetics 212 (2019) 815–835.
[Published Version] View | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC
 
2019 | Journal Article | IST-REx-ID: 6621 | OA
On the power to detect rare recombination events
A.E. Wright, I. Darolti, N.I. Bloch, V. Oostra, B.A. Sandkam, S.D. Buechel, N. Kolm, F. Breden, B. Vicoso, J.E. Mank, Proceedings of the National Academy of Sciences of the United States of America 116 (2019) 12607–12608.
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2019 | Journal Article | IST-REx-ID: 6418 | OA
Sex-biased gene expression and dosage compensation on the Artemia franciscana Z-chromosome
A.K. Huylmans, M.A. Toups, A. Macon, W.J. Gammerdinger, B. Vicoso, Genome Biology and Evolution 11 (2019) 1033–1044.
[Published Version] View | Files available | DOI | WoS
 
 
2019 | Journal Article | IST-REx-ID: 6089 | OA
Pleiotropy modulates the efficacy of selection in drosophila melanogaster
C. Fraisse, G. Puixeu Sala, B. Vicoso, Molecular Biology and Evolution 36 (2019) 500–515.
[Submitted Version] View | Files available | DOI | Download Submitted Version (ext.) | WoS | PubMed | Europe PMC
 
2018 | Journal Article | IST-REx-ID: 190 | OA
Expansions of key protein families in the German cockroach highlight the molecular basis of its remarkable success as a global indoor pest
M. Harrison, N. Arning, L. Kremer, G. Ylla, X. Belles, E. Bornberg Bauer, A.K. Huylmans, E. Jongepier, M. Puilachs, S. Richards, C. Schal, Journal of Experimental Zoology Part B: Molecular and Developmental Evolution 330 (2018) 254–264.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | PubMed | Europe PMC
 
2018 | Journal Article | IST-REx-ID: 448 | OA
Hemimetabolous genomes reveal molecular basis of termite eusociality
Harrison M, Jongepier E, Robertson H, Arning N, Bitard Feildel T, Chao H, Childers C, Dinh H, Doddapaneni H, Dugan S, Gowin J, Greiner C, Han Y, Hu H, Hughes D, Huylmans AK, Kemena K, Kremer L, Lee S, López Ezquerra A, Mallet L, Monroy Kuhn J, Moser A, Murali S, Muzny D, Otani S, Piulachs M, Poelchau M, Qu J, Schaub F, Wada Katsumata A, Worley K, Xie Q, Ylla G, Poulsen M, Gibbs R, Schal C, Richards S, Belles X, Korb J, Bornberg Bauer E. 2018. Hemimetabolous genomes reveal molecular basis of termite eusociality. Nature Ecology and Evolution. 2(3), 557–566.
[Published Version] View | Files available | DOI | WoS
 
2018 | Research Data Reference | IST-REx-ID: 9841 | OA
Data from: Hemimetabolous genomes reveal molecular basis of termite eusociality
Harrison MC, Jongepier E, Robertson HM, Arning N, Bitard-Feildel T, Chao H, Childers CP, Dinh H, Doddapaneni H, Dugan S, Gowin J, Greiner C, Han Y, Hu H, Hughes DST, Huylmans AK, Kemena C, Kremer LPM, Lee SL, Lopez-Ezquerra A, Mallet L, Monroy-Kuhn JM, Moser A, Murali SC, Muzny DM, Otani S, Piulachs M-D, Poelchau M, Qu J, Schaub F, Wada-Katsumata A, Worley KC, Xie Q, Ylla G, Poulsen M, Gibbs RA, Schal C, Richards S, Belles X, Korb J, Bornberg-Bauer E. 2018. Data from: Hemimetabolous genomes reveal molecular basis of termite eusociality, Dryad, 10.5061/dryad.51d4r.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
2018 | Journal Article | IST-REx-ID: 199 | OA
Tissue specificity and dynamics of sex biased gene expression in a common frog population with differentiated, yet homomorphic, sex chromosomes
W. Ma, P. Veltsos, M.A. Toups, N. Rodrigues, R. Sermier, D. Jeffries, N. Perrin, Genes 9 (2018).
[Published Version] View | Files available | DOI | WoS
 
2018 | Journal Article | IST-REx-ID: 63 | OA
Unusual diversity of sex chromosomes in African cichlid fishes
W.J. Gammerdinger, T. Kocher, Genes 9 (2018).
[Published Version] View | Files available | DOI | WoS
 
2018 | Journal Article | IST-REx-ID: 5989 | OA
Parent-of-Origin-Dependent Gene Expression in Male and Female Schistosome Parasites
J. Kincaid-Smith, M.A.L. Picard, C. Cosseau, J. Boissier, D. Severac, C. Grunau, E. Toulza, Genome Biology and Evolution 10 (2018) 840–856.
[Published Version] View | Files available | DOI | WoS
 
2018 | Journal Article | IST-REx-ID: 9917 | OA
Clines on the seashore: The genomic architecture underlying rapid divergence in the face of gene flow
A.M. Westram, M. Rafajlović, P. Chaube, R. Faria, T. Larsson, M. Panova, M. Ravinet, A. Blomberg, B. Mehlig, K. Johannesson, R. Butlin, Evolution Letters 2 (2018) 297–309.
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2018 | Journal Article | IST-REx-ID: 9915 | OA
Are assortative mating and genital divergence driven by reinforcement?
J. Hollander, M. Montaño-Rendón, G. Bianco, X. Yang, A.M. Westram, L. Duvaux, D.G. Reid, R.K. Butlin, Evolution Letters 2 (2018) 557–566.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2018 | Research Data Reference | IST-REx-ID: 9930 | OA
Data from: Clines on the seashore: the genomic architecture underlying rapid divergence in the face of gene flow
A.M. Westram, M. Rafajlović, P. Chaube, R. Faria, T. Larsson, M. Panova, M. Ravinet, A. Blomberg, B. Mehlig, K. Johannesson, R. Butlin, (2018).
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
2018 | Research Data Reference | IST-REx-ID: 9929 | OA
Data from: Are assortative mating and genital divergence driven by reinforcement?
J. Hollander, M. Montaño-Rendón, G. Bianco, X. Yang, A.M. Westram, L. Duvaux, D.G. Reid, R.K. Butlin, (2018).
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
2018 | Journal Article | IST-REx-ID: 139 | OA [Published Version] View | Files available | DOI | WoS
 
2018 | Journal Article | IST-REx-ID: 131 | OA
Evolution of gene dosage on the Z-chromosome of schistosome parasites
M.A.L. Picard, C. Cosseau, S. Ferré, T. Quack, C. Grevelding, Y. Couté, B. Vicoso, ELife 7 (2018).
[Published Version] View | Files available | DOI | WoS
 
 
2018 | Journal Article | IST-REx-ID: 542 | OA
Complex history and differentiation patterns of the t-haplotype, a mouse meiotic driver
R.K. Kelemen, B. Vicoso, Genetics 208 (2018) 365–375.
[Published Version] View | Files available | DOI | WoS
 
2018 | Research Data | IST-REx-ID: 5757 | OA [Published Version] View | Files available | DOI
 
2017 | Journal Article | IST-REx-ID: 1085 | OA
Convergent recombination suppression suggests role of sexual selection in guppy sex chromosome formation
A. Wright, I. Darolti, N. Bloch, V. Oostra, B. Sandkam, S. Buechel, N. Kolm, F. Breden, B. Vicoso, J. Mank, Nature Communications 8 (2017).
[Published Version] View | Files available | DOI | WoS
 
2017 | Journal Article | IST-REx-ID: 1019
X-linkage is not a general inhibitor of tissue-specific gene expression in Drosophila melanogaster
E. Argyridou, A.K. Huylmans, A. Königer, J. Parsch, Heredity 119 (2017) 27–34.
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2017 | Research Data Reference | IST-REx-ID: 9861 | OA [Published Version] View | Files available | DOI | Download Published Version (ext.)
 
2017 | Journal Article | IST-REx-ID: 945 | OA
Global dosage compensation is ubiquitous in Lepidoptera, but counteracted by the masculinization of the Z chromosome
A.K. Huylmans, A. Macon, B. Vicoso, Molecular Biology and Evolution 34 (2017) 2637–2649.
[Published Version] View | Files available | DOI | WoS
 
2017 | Journal Article | IST-REx-ID: 614 | OA
The deep conservation of the Lepidoptera Z chromosome suggests a non canonical origin of the W
C. Fraisse, M.A.L. Picard, B. Vicoso, Nature Communications 8 (2017).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
 
 
 
2016 | Journal Article | IST-REx-ID: 1329 | OA
De novo transcriptome assembly and sex-biased gene expression in the cyclical parthenogenetic Daphnia galeata
A.K. Huylmans, A. López Ezquerra, J. Parsch, M. Cordellier, Genome Biology and Evolution 8 (2016) 3120–3139.
[Published Version] View | Files available | DOI
 
2016 | Journal Article | IST-REx-ID: 1158 | OA
Shedding light on the grey zone of speciation along a continuum of genomic divergence
C. Roux, C. Fraisse, J. Romiguier, Y. Anciaux, N. Galtier, N. Bierne, PLoS Biology 14 (2016).
[Published Version] View | Files available | DOI
 
2016 | Research Data Reference | IST-REx-ID: 9862
Simulation study to test the robustness of ABC in face of recent times of divergence
C. Roux, C. Fraisse, J. Romiguier, Y. Anciaux, N. Galtier, N. Bierne, (2016).
[Published Version] View | Files available | DOI
 
2016 | Research Data Reference | IST-REx-ID: 9863
Accessions of surveyed individuals, geographic locations and summary statistics
C. Roux, C. Fraisse, J. Romiguier, Y. Anciaux, N. Galtier, N. Bierne, (2016).
[Published Version] View | Files available | DOI
 
2015 | Journal Article | IST-REx-ID: 1513 | OA
The X chromosome of hemipteran insects: Conservation, dosage compensation and sex-biased expression
A. Pal, B. Vicoso, Genome Biology and Evolution 7 (2015) 3259–3268.
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2015 | Journal Article | IST-REx-ID: 1577 | OA
Birth of a new gene on the Y chromosome of Drosophila melanogaster
A. Carvalho, B. Vicoso, C. Russo, B. Swenor, A. Clark, PNAS 112 (2015) 12450–12455.
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