Gnügge, Robert, Lekshmi Dharmarajan, Moritz Lang, and Jörg Stelling. “An Orthogonal Permease–Inducer–Repressor Feedback Loop Shows Bistability.”https://doi.org/10.1021/acssynbio.6b00013__ACS Synthetic Biology. American Chemical Society, 2016.https://doi.org/10.1021/acssynbio.6b00013 .
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Lang, Moritz, and Jörg Stelling. “Modular Parameter Identification of Biomolecular Networks.”https://doi.org/10.1137/15M103306X__SIAM Journal on Scientific Computing. Society for Industrial and Applied Mathematics , 2016.https://doi.org/10.1137/15M103306X .
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Miki, Gregor, Alex Stoll, Joe Bevirt, Rok Grah, and Mark Moore. “Fuselage Boundary Layer Ingestion Propulsion Applied to a Thin Haul Commuter Aircraft for Optimal Efficiency,”https://doi.org/10.2514/6.2016-3764__1–19. AIAA, 2016.https://doi.org/10.2514/6.2016-3764 .
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Stone, Laura, Michael Baym, Tami Lieberman, Remy P Chait, Jon Clardy, and Roy Kishony. “Compounds That Select against the Tetracycline-Resistance Efflux Pump.”https://doi.org/10.1038/nchembio.2176__Nature Chemical Biology. Nature Publishing Group, 2016.https://doi.org/10.1038/nchembio.2176 .
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Lang, Moritz, and Eduardo Sontag. “Scale-Invariant Systems Realize Nonlinear Differential Operators,”https://doi.org/10.1109/ACC.2016.7526722__Vol. 2016–July. IEEE, 2016.https://doi.org/10.1109/ACC.2016.7526722 .
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Chait, Remy P, Adam Palmer, Idan Yelin, and Roy Kishony. “Pervasive Selection for and against Antibiotic Resistance in Inhomogeneous Multistress Environments.”https://doi.org/10.1038/ncomms10333__Nature Communications. Nature Publishing Group, 2016.https://doi.org/10.1038/ncomms10333 .
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Baym, Michael, Tami Lieberman, Eric Kelsic, Remy P Chait, Rotem Gross, Idan Yelin, and Roy Kishony. “Spatiotemporal Microbial Evolution on Antibiotic Landscapes.”https://doi.org/10.1126/science.aag0822__Science. American Association for the Advancement of Science, 2016.https://doi.org/10.1126/science.aag0822 .
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Oliveto, Pietro, Tiago Paixao, Jorge Heredia, Dirk Sudholt, and Barbora Trubenova. “When Non-Elitism Outperforms Elitism for Crossing Fitness Valleys.”https://doi.org/10.1145/2908812.2908909__In Proceedings of the Genetic and Evolutionary Computation Conference 2016 , 1163–70. ACM, 2016.https://doi.org/10.1145/2908812.2908909 .
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Paixao, Tiago, and Nicholas H Barton. “The Effect of Gene Interactions on the Long-Term Response to Selection.”https://doi.org/10.1073/pnas.1518830113__PNAS. National Academy of Sciences, 2016.https://doi.org/10.1073/pnas.1518830113 .
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Lagator, Mato, Claudia Igler, Anaisa Moreno, Calin C Guet, and Jonathan P Bollback. “Epistatic Interactions in the Arabinose Cis-Regulatory Element.”https://doi.org/10.1093/molbev/msv269__Molecular Biology and Evolution. Oxford University Press, 2016.https://doi.org/10.1093/molbev/msv269 .
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Beica, Andreea, Calin C Guet, and Tatjana Petrov. “Efficient Reduction of Kappa Models by Static Inspection of the Rule-Set,”https://doi.org/10.1007/978-3-319-26916-0_10__9271:173–91. Springer, 2016.https://doi.org/10.1007/978-3-319-26916-0_10 .
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Boehm, Alex, Markus Arnoldini, Tobias Bergmiller, Thomas Röösli, Colette Bigosch, and Martin Ackermann. “Genetic Manipulation of Glycogen Allocation Affects Replicative Lifespan in E Coli.”https://doi.org/10.1371/journal.pgen.1005974__PLoS Genetics. Public Library of Science, 2016.https://doi.org/10.1371/journal.pgen.1005974 .
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Wielgoss, Sébastien, Tobias Bergmiller, Anna M. Bischofberger, and Alex R. Hall. “Adaptation to Parasites and Costs of Parasite Resistance in Mutator and Nonmutator Bacteria.”https://doi.org/10.1093/molbev/msv270__Molecular Biology and Evolution. Oxford University Press, 2016.https://doi.org/10.1093/molbev/msv270 .
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Daca, Przemyslaw, Thomas A Henzinger, Jan Kretinsky, and Tatjana Petrov. “Linear Distances between Markov Chains,”https://doi.org/10.4230/LIPIcs.CONCUR.2016.20__Vol. 59. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2016.https://doi.org/10.4230/LIPIcs.CONCUR.2016.20 .
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Daca, Przemyslaw, Thomas A Henzinger, Jan Kretinsky, and Tatjana Petrov. “Faster Statistical Model Checking for Unbounded Temporal Properties,”https://doi.org/10.1007/978-3-662-49674-9_7__9636:112–29. Springer, 2016.https://doi.org/10.1007/978-3-662-49674-9_7 .
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Pleska, Maros, Long Qian, Reiko Okura, Tobias Bergmiller, Yuichi Wakamoto, Edo Kussell, and Calin C Guet. “Bacterial Autoimmunity Due to a Restriction-Modification System.”https://doi.org/10.1016/j.cub.2015.12.041__Current Biology. Cell Press, 2016.https://doi.org/10.1016/j.cub.2015.12.041 .
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Friedlander, Tamar, Roshan Prizak, Calin C Guet, Nicholas H Barton, and Gasper Tkadik. “Intrinsic Limits to Gene Regulation by Global Crosstalk.”https://doi.org/10.1038/ncomms12307__Nature Communications. Nature Publishing Group, 2016.https://doi.org/10.1038/ncomms12307 .
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Paixao, Tiago, Dirk Sudholt, Jorge Heredia, and Barbora Trubenova. “First Steps towards a Runtime Comparison of Natural and Artificial Evolution.”https://doi.org/10.1145/2739480.2754758__In Proceedings of the 2015 Annual Conference on Genetic and Evolutionary Computation, 1455–62. ACM, 2015.https://doi.org/10.1145/2739480.2754758 .
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Paixao, Tiago, Golnaz Badkobeh, Nicholas H Barton, Dofan Çörüf, Duccuong Dang, Tobias Friedrich, Per Lehre, Dirk Sudholt, Andrew Sutton, and Barbora Trubenova. “Toward a Unifying Framework for Evolutionary Processes.”https://doi.org/10.1016/j.jtbi.2015.07.011__https://doi.org/10.1016/j.jtbi.2015.07.011__Journal of Theoretical Biology. Elsevier, 2015.https://doi.org/10.1016/j.jtbi.2015.07.011 .
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Geiger, Bernhard, Tatjana Petrov, Gernot Kubin, and Heinz Koeppl. “Optimal Kullback-Leibler Aggregation via Information Bottleneck.”https://doi.org/10.1109/TAC.2014.2364971__IEEE Transactions on Automatic Control. IEEE, 2015.https://doi.org/10.1109/TAC.2014.2364971 .
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