Le D, Krasnopeeva E, Sinjab F, Pilizota T, Kim M. Active efflux leads to heterogeneous dissipation of proton motive force by protonophores in bacteria. mBio. 2021;12(4). doi:10.1128/mbio.00676-21
LibreCat: https://research-explorer.ista.ac.at/record/15270
DOI: 10.1128/mbio.00676-21
PMID: 34253054

Tomasek K. Pathogenic Escherichia coli hijack the host immune response. 2021. doi:10.15479/at:ista:10307
LibreCat: https://research-explorer.ista.ac.at/record/10307
DOI: 10.15479/at:ista:10307

Tomasek K, Leithner AF, Glatzová I, Lukesch MS, Guet CC, Sixt MK. Type 1 piliated uropathogenic Escherichia coli hijack the host immune response by binding to C. bioRxiv. doi:10.1101/2021.10.18.464770
LibreCat: https://research-explorer.ista.ac.at/record/10316
DOI: 10.1101/2021.10.18.464770

Kainrath S, Janovjak HL. Design and application of light-regulated receptor tyrosine kinases. In: Niopek D, ed. Photoswitching Proteins. Vol 2173. MIMB. Springer Nature; 2020:233-246. doi:10.1007/978-1-0716-0755-8_16
LibreCat: https://research-explorer.ista.ac.at/record/8173
DOI: 10.1007/978-1-0716-0755-8_16

Grah R. Gene regulation across scales – how biophysical constraints shape evolution. 2020. doi:10.15479/AT:ISTA:8155
LibreCat: https://research-explorer.ista.ac.at/record/8155
DOI: 10.15479/AT:ISTA:8155

Grah R, Zoller B, Tkadik G. Normative models of enhancer function. bioRxiv. 2020. doi:10.1101/2020.04.08.029405
LibreCat: https://research-explorer.ista.ac.at/record/7675
DOI: 10.1101/2020.04.08.029405

Grah R, Friedlander T. The relation between crosstalk and gene regulation form revisited. PLOS Computational Biology. 2020;16(2). doi:10.1371/journal.pcbi.1007642
LibreCat: https://research-explorer.ista.ac.at/record/7569
DOI: 10.1371/journal.pcbi.1007642
WoS: 000526725200019

Kainrath S. Synthetic tools for optogenetic and chemogenetic inhibition of cellular signals. 2020. doi:10.15479/AT:ISTA:7680
LibreCat: https://research-explorer.ista.ac.at/record/7680
DOI: 10.15479/AT:ISTA:7680

Tomanek I, Grah R, Lagator M, et al. Gene amplification as a form of population-level gene expression regulation. Nature Ecology &; Evolution. 2020;4(4):612-625. doi:10.1038/s41559-020-1132-7
LibreCat: https://research-explorer.ista.ac.at/record/7652
DOI: 10.1038/s41559-020-1132-7
WoS: 000519008300005

Tomanek I. The evolution of gene expression by copy number and point mutations. 2020. doi:10.15479/AT:ISTA:8653
LibreCat: https://research-explorer.ista.ac.at/record/8653
DOI: 10.15479/AT:ISTA:8653

Chassin H, Müller M, Tigges M, Scheller L, Lang M, Fussenegger M. A modular degron library for synthetic circuits in mammalian cells. Nature Communications. 2019;10(1). doi:10.1038/s41467-019-09974-5
LibreCat: https://research-explorer.ista.ac.at/record/6465
DOI: 10.1038/s41467-019-09974-5
WoS: 000466338600006

Igler C, Abedon ST. Commentary: A host-produced quorum-sensing autoinducer controls a phage lysis-lysogeny decision. Frontiers in Microbiology. 2019;10. doi:10.3389/fmicb.2019.01171
LibreCat: https://research-explorer.ista.ac.at/record/6717
DOI: 10.3389/fmicb.2019.01171
WoS: 000470131200001

Ruess J, Pleska M, Guet CC, Tkadik G. Molecular noise of innate immunity shapes bacteria-phage ecologies. PLoS Computational Biology. 2019;15(7). doi:10.1371/journal.pcbi.1007168
LibreCat: https://research-explorer.ista.ac.at/record/6784
DOI: 10.1371/journal.pcbi.1007168
WoS: 000481577700032

Ruess J, Pleska M, Guet CC, Tkadik G. Supporting text and results. 2019. doi:10.1371/journal.pcbi.1007168.s001
LibreCat: https://research-explorer.ista.ac.at/record/9786
DOI: 10.1371/journal.pcbi.1007168.s001

Guet CC, Henzinger TA, Igler C, Petrov T, Sezgin A. Transient memory in gene regulation. In: 17th International Conference on Computational Methods in Systems Biology. Vol 11773. Springer Nature; 2019:155-187. doi:10.1007/978-3-030-31304-3_9
LibreCat: https://research-explorer.ista.ac.at/record/7147
DOI: 10.1007/978-3-030-31304-3_9
WoS: 000557875100009

Nikolic N. Autoregulation of bacterial gene expression: lessons from the MazEF toxin–antitoxin system. Current Genetics. 2019;65(1):133-138. doi:10.1007/s00294-018-0879-8
LibreCat: https://research-explorer.ista.ac.at/record/138
DOI: 10.1007/s00294-018-0879-8
WoS: 000456958800017

Lang M, Shkolnikov M. Harmonic dynamics of the Abelian sandpile. Proceedings of the National Academy of Sciences. 2019;116(8):2821-2830. doi:10.1073/pnas.1812015116
LibreCat: https://research-explorer.ista.ac.at/record/196
DOI: 10.1073/pnas.1812015116
WoS: 000459074400013
PMID:  30728300
arXiv: 1806.10823

Igler C. On the nature of gene regulatory design - The biophysics of transcription factor binding shapes gene regulation. 2019. doi:10.15479/AT:ISTA:6371
LibreCat: https://research-explorer.ista.ac.at/record/6371
DOI: 10.15479/AT:ISTA:6371

Misun P, Birchler A, Lang M, Hierlemann A, Frey O. Fabrication and operation of microfluidic hanging drop networks. Methods in Molecular Biology. 2018;1771:183-202. doi:10.1007/978-1-4939-7792-5_15
LibreCat: https://research-explorer.ista.ac.at/record/305
DOI: 10.1007/978-1-4939-7792-5_15

Oliveto P, Paixao T, Pérez Heredia J, Sudholt D, Trubenova B. How to escape local optima in black box optimisation when non elitism outperforms elitism. Algorithmica. 2018;80(5):1604-1633. doi:10.1007/s00453-017-0369-2
LibreCat: https://research-explorer.ista.ac.at/record/723
DOI: 10.1007/s00453-017-0369-2
WoS: 000428239300010