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Geiger, B., Petrov, T., Kubin, G., &; Koeppl, H. (2015). Optimal Kullback-Leibler aggregation via information bottleneck. IEEE Transactions on Automatic Control. IEEE.https://doi.org/10.1109/TAC.2014.2364971 
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Tugrul, M., Paixao, T., Barton, N. H., &; Tkadik, G. (2015). Other fitness models for comparison &; for interacting TFBSs. Public Library of Science.https://doi.org/10.1371/journal.pgen.1005639.s001 
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Wielgoss, S., Bergmiller, T., Bischofberger, A. M., &; Hall, A. R. (2015). Data from: Adaptation to parasites and costs of parasite resistance in mutator and non-mutator bacteria. Dryad.https://doi.org/10.5061/dryad.cj910 
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Tugrul, M., Paixao, T., Barton, N. H., &; Tkadik, G. (2015). Dynamics of transcription factor binding site evolution. PLoS Genetics. Public Library of Science.https://doi.org/10.1371/journal.pgen.1005639 
LibreCat: https://research-explorer.ista.ac.at/record/1666
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Giacobbe, M., Guet, C. C., Gupta, A., Henzinger, T. A., Paixao, T., &; Petrov, T. (2015). Model checking gene regulatory networks. Presented at the TACAS: Tools and Algorithms for the Construction and Analysis of Systems, London, United Kingdom: Springer.https://doi.org/10.1007/978-3-662-46681-0_47 
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Grabowska, A., Wywia, E., Dunin Horkawicz, S., asica, A., Wösten, M., Nagy-Staron, A. A.,https://doi.org/10.1371/journal.pone.0106247__Jagusztyn Krynicka, E. (2014). Functional and bioinformatics analysis of two Campylobacter jejuni homologs of the thiol-disulfide oxidoreductase, DsbA. PLoS One. Public Library of Science.https://doi.org/10.1371/journal.pone.0106247 
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Ganguly, A., Petrov, T., &; Koeppl, H. (2014). Markov chain aggregation and its applications to combinatorial reaction networks. Journal of Mathematical Biology. Springer.https://doi.org/10.1007/s00285-013-0738-7 
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Lagator, M., Morgan, A., Neve, P., &; Colegrave, N. (2014). Role of sex and migration in adaptation to sink environments. Evolution. Wiley.https://doi.org/10.1111/evo.12440 
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Lagator, M., Morgan, A., Neve, P., &; Colegrave, N. (2014). Data from: Role of sex and migration in adaptation to sink environments. Dryad.https://doi.org/10.5061/dryad.s42n1 
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Lagator, M., Colegrave, N., &; Neve, P. (2014). Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses. Proceedings of the Royal Society of London Series B Biological Sciences. Royal Society, The.https://doi.org/10.1098/rspb.2014.1679 
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Lagator, M., Colegrave, N., &; Neve, P. (2014). Data from: Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses. Dryad.https://doi.org/10.5061/dryad.85dn7 
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Dhar, R., Bergmiller, T., &; Wagner, A. (2014). Increased gene dosage plays a predominant role in the initial stages of evolution of duplicate TEM-1 beta lactamase genes. Evolution. Wiley.https://doi.org/10.1111/evo.12373 
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Dhar, R., Bergmiller, T., &; Wagner, A. (2014). Data from: Increased gene dosage plays a predominant role in the initial stages of evolution of duplicate TEM-1 beta lactamase genes. Dryad.https://doi.org/10.5061/dryad.jc402 
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Milenkovi, I., Petrov, T., &; Kovács, G. (2014). Patterns of hippocampal tau pathology differentiate neurodegenerative dementias. Dementia and Geriatric Cognitive Disorders. Karger Publishers.https://doi.org/10.1159/000365548 
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Barton, N. H., &; Paixao, T. (2013). Can quantitative and population genetics help us understand evolutionary computation? In Proceedings of the 15th annual conference on Genetic and evolutionary computation (pp. 1573–1580). Amsterdam, Netherlands: ACM.https://doi.org/10.1145/2463372.2463568 
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Long, H., Paixao, T., Azevedo, R., &; Zufall, R. (2013). Accumulation of spontaneous mutations in the ciliate Tetrahymena thermophila. Genetics. Genetics Society of America.https://doi.org/10.1534/genetics.113.153536 
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PMID: 23934880

Paixao, T., &; Barton, N. H. (2013). A variance decomposition approach to the analysis of genetic algorithms. In Proceedings of the 15th annual conference on Genetic and evolutionary computation (pp. 845–852). Amsterdam, Netherlands: ACM.https://doi.org/10.1145/2463372.2463470 
LibreCat: https://research-explorer.ista.ac.at/record/2719
DOI: 10.1145/2463372.2463470

Wakamoto, Y., Dhar, N., Chait, R. P., Schneider, K., Signorino Gelo, F., Leibler, S., &; Mckinney, J. (2013). Dynamic persistence of antibiotic-stressed mycobacteria. Science. American Association for the Advancement of Science.https://doi.org/10.1126/science.1229858 
LibreCat: https://research-explorer.ista.ac.at/record/499
DOI: 10.1126/science.1229858

Refardt, D., Bergmiller, T., &; Kümmerli, R. (2013). Altruism can evolve when relatedness is low: Evidence from bacteria committing suicide upon phage infection. Proceedings of the Royal Society of London Series B Biological Sciences. The Royal Society.https://doi.org/10.1098/rspb.2012.3035 
LibreCat: https://research-explorer.ista.ac.at/record/2853
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PMID: 23516238