Daca, Przemyslaw, Thomas A Henzinger, Jan Kretinsky, and Tatjana Petrov. “Linear Distances between Markov Chains,”https://doi.org/10.4230/LIPIcs.CONCUR.2016.20__Vol. 59. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2016.https://doi.org/10.4230/LIPIcs.CONCUR.2016.20 .

Daca, Przemyslaw, Thomas A Henzinger, Jan Kretinsky, and Tatjana Petrov. “Faster Statistical Model Checking for Unbounded Temporal Properties,”https://doi.org/10.1007/978-3-662-49674-9_7__9636:112–29. Springer, 2016.https://doi.org/10.1007/978-3-662-49674-9_7 .

Pleska, Maros, Long Qian, Reiko Okura, Tobias Bergmiller, Yuichi Wakamoto, Edo Kussell, and Calin C Guet. “Bacterial Autoimmunity Due to a Restriction-Modification System.”https://doi.org/10.1016/j.cub.2015.12.041__Current Biology. Cell Press, 2016.https://doi.org/10.1016/j.cub.2015.12.041 .

Friedlander, Tamar, Roshan Prizak, Calin C Guet, Nicholas H Barton, and Gasper Tkadik. “Intrinsic Limits to Gene Regulation by Global Crosstalk.”https://doi.org/10.1038/ncomms12307__Nature Communications. Nature Publishing Group, 2016.https://doi.org/10.1038/ncomms12307 .

Paixao, Tiago, Dirk Sudholt, Jorge Heredia, and Barbora Trubenova. “First Steps towards a Runtime Comparison of Natural and Artificial Evolution.”https://doi.org/10.1145/2739480.2754758__In Proceedings of the 2015 Annual Conference on Genetic and Evolutionary Computation, 1455–62. ACM, 2015.https://doi.org/10.1145/2739480.2754758 .

Paixao, Tiago, Golnaz Badkobeh, Nicholas H Barton, Dofan Çörüf, Duccuong Dang, Tobias Friedrich, Per Lehre, Dirk Sudholt, Andrew Sutton, and Barbora Trubenova. “Toward a Unifying Framework for Evolutionary Processes.”https://doi.org/10.1016/j.jtbi.2015.07.011__https://doi.org/10.1016/j.jtbi.2015.07.011__Journal of Theoretical Biology. Elsevier, 2015.https://doi.org/10.1016/j.jtbi.2015.07.011 .

Geiger, Bernhard, Tatjana Petrov, Gernot Kubin, and Heinz Koeppl. “Optimal Kullback-Leibler Aggregation via Information Bottleneck.”https://doi.org/10.1109/TAC.2014.2364971__IEEE Transactions on Automatic Control. IEEE, 2015.https://doi.org/10.1109/TAC.2014.2364971 .

Tugrul, Murat, Tiago Paixao, Nicholas H Barton, and Gasper Tkadik. “Other Fitness Models for Comparison &; for Interacting TFBSs.”https://doi.org/10.1371/journal.pgen.1005639.s001__Public Library of Science, 2015.https://doi.org/10.1371/journal.pgen.1005639.s001 .

Wielgoss, Sébastien, Tobias Bergmiller, Anna M. Bischofberger, and Alex R. Hall. “Data from: Adaptation to Parasites and Costs of Parasite Resistance in Mutator and Non-Mutator Bacteria.”https://doi.org/10.5061/dryad.cj910__Dryad, 2015.https://doi.org/10.5061/dryad.cj910 .

Tugrul, Murat, Tiago Paixao, Nicholas H Barton, and Gasper Tkadik. “Dynamics of Transcription Factor Binding Site Evolution.”https://doi.org/10.1371/journal.pgen.1005639__PLoS Genetics. Public Library of Science, 2015.https://doi.org/10.1371/journal.pgen.1005639 .

Giacobbe, Mirco, Calin C Guet, Ashutosh Gupta, Thomas A Henzinger, Tiago Paixao, and Tatjana Petrov. “Model Checking Gene Regulatory Networks.”https://doi.org/10.1007/978-3-662-46681-0_47__Lecture Notes in Computer Science. Springer, 2015.https://doi.org/10.1007/978-3-662-46681-0_47 .

Grabowska, Anna, Ewa Wywia, Stanislaw Dunin Horkawicz, Anna asica, Marc Wösten, Anna A Nagy-Staron, Renata Godlewska, et al. “Functional and Bioinformatics Analysis of Two Campylobacter Jejuni Homologs of the Thiol-Disulfide Oxidoreductase, DsbA.”https://doi.org/10.1371/journal.pone.0106247__PLoS One. Public Library of Science, 2014.https://doi.org/10.1371/journal.pone.0106247 .

Ganguly, Arnab, Tatjana Petrov, and Heinz Koeppl. “Markov Chain Aggregation and Its Applications to Combinatorial Reaction Networks.”https://doi.org/10.1007/s00285-013-0738-7__Journal of Mathematical Biology. Springer, 2014.https://doi.org/10.1007/s00285-013-0738-7 .

Lagator, Mato, Andrew Morgan, Paul Neve, and Nick Colegrave. “Role of Sex and Migration in Adaptation to Sink Environments.”https://doi.org/10.1111/evo.12440__Evolution. Wiley, 2014.https://doi.org/10.1111/evo.12440 .

Lagator, Mato, Andrew Morgan, Paul Neve, and Nick Colegrave. “Data from: Role of Sex and Migration in Adaptation to Sink Environments.”https://doi.org/10.5061/dryad.s42n1__Dryad, 2014.https://doi.org/10.5061/dryad.s42n1 .

Lagator, Mato, Nick Colegrave, and Paul Neve. “Selection History and Epistatic Interactions Impact Dynamics of Adaptation to Novel Environmental Stresses.”https://doi.org/10.1098/rspb.2014.1679__Proceedings of the Royal Society of London Series B Biological Sciences. Royal Society, The, 2014.https://doi.org/10.1098/rspb.2014.1679 .

Lagator, Mato, Nick Colegrave, and Paul Neve. “Data from: Selection History and Epistatic Interactions Impact Dynamics of Adaptation to Novel Environmental Stresses.”https://doi.org/10.5061/dryad.85dn7__Dryad, 2014.https://doi.org/10.5061/dryad.85dn7 .

Dhar, Riddhiman, Tobias Bergmiller, and Andreas Wagner. “Increased Gene Dosage Plays a Predominant Role in the Initial Stages of Evolution of Duplicate TEM-1 Beta Lactamase Genes.”https://doi.org/10.1111/evo.12373__Evolution. Wiley, 2014.https://doi.org/10.1111/evo.12373 .

Dhar, Riddhiman, Tobias Bergmiller, and Andreas Wagner. “Data from: Increased Gene Dosage Plays a Predominant Role in the Initial Stages of Evolution of Duplicate TEM-1 Beta Lactamase Genes.”https://doi.org/10.5061/dryad.jc402__Dryad, 2014.https://doi.org/10.5061/dryad.jc402 .

Milenkovi, Ivan, Tatjana Petrov, and Gábor Kovács. “Patterns of Hippocampal Tau Pathology Differentiate Neurodegenerative Dementias.”https://doi.org/10.1159/000365548__Dementia and Geriatric Cognitive Disorders. Karger Publishers, 2014.https://doi.org/10.1159/000365548 .