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Milenkovi, I., Petrov, T., &; Kovács, G. (2014). Patterns of hippocampal tau pathology differentiate neurodegenerative dementias. Dementia and Geriatric Cognitive Disorders. Karger Publishers.https://doi.org/10.1159/000365548 
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Barton, N. H., &; Paixao, T. (2013). Can quantitative and population genetics help us understand evolutionary computation? In Proceedings of the 15th annual conference on Genetic and evolutionary computation (pp. 1573–1580). Amsterdam, Netherlands: ACM.https://doi.org/10.1145/2463372.2463568 
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Long, H., Paixao, T., Azevedo, R., &; Zufall, R. (2013). Accumulation of spontaneous mutations in the ciliate Tetrahymena thermophila. Genetics. Genetics Society of America.https://doi.org/10.1534/genetics.113.153536 
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Paixao, T., &; Barton, N. H. (2013). A variance decomposition approach to the analysis of genetic algorithms. In Proceedings of the 15th annual conference on Genetic and evolutionary computation (pp. 845–852). Amsterdam, Netherlands: ACM.https://doi.org/10.1145/2463372.2463470 
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Wakamoto, Y., Dhar, N., Chait, R. P., Schneider, K., Signorino Gelo, F., Leibler, S., &; Mckinney, J. (2013). Dynamic persistence of antibiotic-stressed mycobacteria. Science. American Association for the Advancement of Science.https://doi.org/10.1126/science.1229858 
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Refardt, D., Bergmiller, T., &; Kümmerli, R. (2013). Altruism can evolve when relatedness is low: Evidence from bacteria committing suicide upon phage infection. Proceedings of the Royal Society of London Series B Biological Sciences. The Royal Society.https://doi.org/10.1098/rspb.2012.3035 
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Refardt, D., Bergmiller, T., &; Kümmerli, R. (2013). Data from: Altruism can evolve when relatedness is low: evidence from bacteria committing suicide upon phage infection. Dryad.https://doi.org/10.5061/dryad.b1q2n 
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Henzinger, T. A., &; Mateescu, M. (2012). The propagation approach for computing biochemical reaction networks. IEEE ACM Transactions on Computational Biology and Bioinformatics. IEEE.https://doi.org/10.1109/TCBB.2012.91 
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Hadizadeh Yazdi, N., Guet, C. C., Johnson, R., &; Marko, J. (2012). Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions. Molecular Microbiology. Wiley-Blackwell.https://doi.org/10.1111/mmi.12071 
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Bergmiller, T., Ackermann, M., &; Silander, O. (2012). Patterns of evolutionary conservation of essential genes correlate with their compensability. PLoS Genetics. Public Library of Science.https://doi.org/10.1371/journal.pgen.1002803 
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Guet, C. C., Gupta, A., Henzinger, T. A., Mateescu, M., &; Sezgin, A. (2012). Delayed continuous time Markov chains for genetic regulatory circuits (Vol. 7358, pp. 294–309). Presented at the CAV: Computer Aided Verification, Berkeley, CA, USA: Springer.https://doi.org/10.1007/978-3-642-31424-7_24 
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Park, H., Oikonomou, P., Guet, C. C., &; Cluzel, P. (2011). Noise underlies switching behavior of the bacterial flagellum. Biophysical Journal. Elsevier.https://doi.org/10.1016/j.bpj.2011.09.040 
LibreCat: https://research-explorer.ista.ac.at/record/6496
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PMID: 22098731

Feret, J., Henzinger, T. A., Koeppl, H., &; Petrov, T. (2010). Lumpability abstractions of rule-based systems (Vol. 40, pp. 142–161). Presented at the MECBIC: Membrane Computing and Biologically Inspired Process Calculi, Jena, Germany: Open Publishing Association.
LibreCat: https://research-explorer.ista.ac.at/record/3719
arXiv: 1011.0496

Didier, F., Henzinger, T. A., Mateescu, M., &; Wolf, V. (2010). SABRE: A tool for the stochastic analysis of biochemical reaction networks (pp. 193–194). Presented at the QEST: Quantitative Evaluation of Systems, Williamsburg, USA: IEEE.https://doi.org/10.1109/QEST.2010.33 
LibreCat: https://research-explorer.ista.ac.at/record/3847
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Didier, F., Henzinger, T. A., Mateescu, M., &; Wolf, V. (2009). Fast adaptive uniformization of the chemical master equation (Vol. 4, pp. 118–127). Presented at the HIBI: High-Performance Computational Systems Biology, Trento, Italy: IEEE.https://doi.org/10.1109/HiBi.2009.23 
LibreCat: https://research-explorer.ista.ac.at/record/3843
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