Flow cytometry YFP and CFP data and deep sequencing data of populations evolving in galactose
I. Tomanek, C.C. Guet, (2022).
LibreCat: https://research-explorer.ista.ac.at/record/12339
DOI: 10.5061/dryad.rfj6q57ds

Sequences of gene regulatory network permutations for the article "Local genetic context shapes the function of a gene regulatory network"
A.A. Nagy-Staron, (2020).
LibreCat: https://research-explorer.ista.ac.at/record/8951
DOI: 10.15479/AT:ISTA:8951

Matlab scripts for the Paper: Gene Amplification as a Form of Population-Level Gene Expression regulation
R. Grah, (2020).
LibreCat: https://research-explorer.ista.ac.at/record/7383
DOI: 10.15479/AT:ISTA:7383

Supporting text and results
J. Ruess, M. Pleska, C.C. Guet, G. Tkadik, (2019).
LibreCat: https://research-explorer.ista.ac.at/record/9786
DOI: 10.1371/journal.pcbi.1007168.s001

Data for the paper "Gene amplification as a form of population-level gene expression regulation"
I. Tomanek, (2019).
LibreCat: https://research-explorer.ista.ac.at/record/7016
DOI: 10.15479/AT:ISTA:7016

Numerical data used in figures
W. Chaudhry, M. Pleska, N. Shah, H. Weiss, I. Mccall, J. Meyer, A. Gupta, C.C. Guet, B. Levin, (2018).
LibreCat: https://research-explorer.ista.ac.at/record/9810
DOI: 10.1371/journal.pbio.2005971.s008

Time-lapse microscopy data
T. Bergmiller, N. Nikolic, (2018).
LibreCat: https://research-explorer.ista.ac.at/record/5569
DOI: 10.15479/AT:ISTA:74

Data for the paper Evolutionary potential of transcription factors for gene regulatory rewiring
C. Igler, M. Lagator, G. Tkadik, J.P. Bollback, C.C. Guet, (2018).
LibreCat: https://research-explorer.ista.ac.at/record/5585
DOI: 10.15479/AT:ISTA:108

Supplementary materials and methods; Full data set from effects of mutations in phage restriction sites during escape from restriction–modification
M. Pleska, C.C. Guet, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/9847
DOI: 10.6084/m9.figshare.5633917.v1

Mathematical model
N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/9845
DOI: 10.1371/journal.pgen.1007122.s017

Modelling and simulation details
M. Lukacisinova, S. Novak, T. Paixao, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/9849
DOI: 10.1371/journal.pcbi.1005609.s001

Extensions of the model
M. Lukacisinova, S. Novak, T. Paixao, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/9850
DOI: 10.1371/journal.pcbi.1005609.s002

Supplementary methods
N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/9846
DOI: 10.1371/journal.pgen.1007122.s016

Heuristic prediction for multiple stresses
M. Lukacisinova, S. Novak, T. Paixao, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/9851
DOI: 10.1371/journal.pcbi.1005609.s003

Resistance frequencies for different combination strategies
M. Lukacisinova, S. Novak, T. Paixao, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/9852
DOI: 10.1371/journal.pcbi.1005609.s004

Source data for figures and tables
N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/9844
DOI: 10.1371/journal.pgen.1007122.s018

Fastq files for "Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection"
M. Steinrück, C.C. Guet, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/5564
DOI: 10.15479/AT:ISTA:65

Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity
T. Bergmiller, A.M. Andersson, K. Tomasek, E. Balleza, D. Kiviet, R. Hauschild, G. Tkadik, C.C. Guet, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/5560
DOI: 10.15479/AT:ISTA:53

Quantification of the growth rate reduction as a consequence of age-specific mortality
A. Boehm, M. Arnoldini, T. Bergmiller, T. Röösli, C. Bigosch, M. Ackermann, (2016).
LibreCat: https://research-explorer.ista.ac.at/record/9873
DOI: 10.1371/journal.pgen.1005974.s015

Other fitness models for comparison & for interacting TFBSs
M. Tugrul, T. Paixao, N.H. Barton, G. Tkadik, (2015).
LibreCat: https://research-explorer.ista.ac.at/record/9712
DOI: 10.1371/journal.pgen.1005639.s001

Data from: Adaptation to parasites and costs of parasite resistance in mutator and non-mutator bacteria
S. Wielgoss, T. Bergmiller, A.M. Bischofberger, A.R. Hall, (2015).
LibreCat: https://research-explorer.ista.ac.at/record/9719
DOI: 10.5061/dryad.cj910

Data from: Role of sex and migration in adaptation to sink environments
M. Lagator, A. Morgan, P. Neve, N. Colegrave, (2014).
LibreCat: https://research-explorer.ista.ac.at/record/9747
DOI: 10.5061/dryad.s42n1

Data from: Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses
M. Lagator, N. Colegrave, P. Neve, (2014).
LibreCat: https://research-explorer.ista.ac.at/record/9741
DOI: 10.5061/dryad.85dn7

Data from: Increased gene dosage plays a predominant role in the initial stages of evolution of duplicate TEM-1 beta lactamase genes
R. Dhar, T. Bergmiller, A. Wagner, (2014).
LibreCat: https://research-explorer.ista.ac.at/record/9932
DOI: 10.5061/dryad.jc402

Data from: Altruism can evolve when relatedness is low: evidence from bacteria committing suicide upon phage infection
D. Refardt, T. Bergmiller, R. Kümmerli, (2013).
LibreCat: https://research-explorer.ista.ac.at/record/9751
DOI: 10.5061/dryad.b1q2n