Please note that LibreCat no longer supports Internet Explorer versions 8 or 9 (or earlier).
We recommend upgrading to the latest Internet Explorer, Google Chrome, or Firefox.
126 Publications
2015 | Research Data Reference | IST-REx-ID: 9719 | 
Wielgoss S, Bergmiller T, Bischofberger AM, Hall AR. 2015. Data from: Adaptation to parasites and costs of parasite resistance in mutator and non-mutator bacteria, Dryad, 10.5061/dryad.cj910.
[Published Version]
View
| Files available
| DOI
| Download Published Version (ext.)
2015 | Journal Article | IST-REx-ID: 1666 |
Tugrul M, Paixao T, Barton NH, Tkačik G. 2015. Dynamics of transcription factor binding site evolution. PLoS Genetics. 11(11).
[Published Version]
View
| Files available
| DOI
2015 | Conference Paper | IST-REx-ID: 1835 |
Giacobbe M, Guet CC, Gupta A, Henzinger TA, Paixao T, Petrov T. 2015. Model checking gene regulatory networks. 9035, 469–483.
[Preprint]
View
| Files available
| DOI
| Download Preprint (ext.)
2014 | Journal Article | IST-REx-ID: 1894 |
Grabowska A, Wywiał E, Dunin Horkawicz S, Łasica A, Wösten M, Nagy-Staron AA, Godlewska R, Bocian Ostrzycka K, Pieńkowska K, Łaniewski P, Bujnicki J, Van Putten J, Jagusztyn Krynicka E. 2014. Functional and bioinformatics analysis of two Campylobacter jejuni homologs of the thiol-disulfide oxidoreductase, DsbA. PLoS One. 9(9), e106247.
[Published Version]
View
| Files available
| DOI
2014 | Journal Article | IST-REx-ID: 2056 |
Ganguly A, Petrov T, Koeppl H. 2014. Markov chain aggregation and its applications to combinatorial reaction networks. Journal of Mathematical Biology. 69(3), 767–797.
[Submitted Version]
View
| DOI
| Download Submitted Version (ext.)
2014 | Journal Article | IST-REx-ID: 2083 |
Lagator M, Morgan A, Neve P, Colegrave N. 2014. Role of sex and migration in adaptation to sink environments. Evolution. 68(8), 2296–2305.
[Published Version]
View
| Files available
| DOI
2014 | Research Data Reference | IST-REx-ID: 9747 |
Lagator M, Morgan A, Neve P, Colegrave N. 2014. Data from: Role of sex and migration in adaptation to sink environments, Dryad, 10.5061/dryad.s42n1.
[Published Version]
View
| Files available
| DOI
| Download Published Version (ext.)
2014 | Journal Article | IST-REx-ID: 2036 |
Lagator M, Colegrave N, Neve P. 2014. Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses. Proceedings of the Royal Society of London Series B Biological Sciences. 281(1794), 20141679.
[Submitted Version]
View
| Files available
| DOI
| Download Submitted Version (ext.)
2014 | Research Data Reference | IST-REx-ID: 9741 |
Lagator M, Colegrave N, Neve P. 2014. Data from: Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses, Dryad, 10.5061/dryad.85dn7.
[Published Version]
View
| Files available
| DOI
| Download Published Version (ext.)
2014 | Journal Article | IST-REx-ID: 9931
Dhar R, Bergmiller T, Wagner A. 2014. Increased gene dosage plays a predominant role in the initial stages of evolution of duplicate TEM-1 beta lactamase genes. Evolution. 68(6), 1775–1791.
View
| Files available
| DOI
| PubMed | Europe PMC
2014 | Research Data Reference | IST-REx-ID: 9932 |
Dhar R, Bergmiller T, Wagner A. 2014. Data from: Increased gene dosage plays a predominant role in the initial stages of evolution of duplicate TEM-1 beta lactamase genes, Dryad, 10.5061/dryad.jc402.
[Published Version]
View
| Files available
| DOI
| Download Published Version (ext.)
2014 | Journal Article | IST-REx-ID: 1913 |
Milenković I, Petrov T, Kovács G. 2014. Patterns of hippocampal tau pathology differentiate neurodegenerative dementias. Dementia and Geriatric Cognitive Disorders. 38(5–6), 375–388.
[Published Version]
View
| DOI
| Download Published Version (ext.)
| PubMed | Europe PMC
2013 | Conference Paper | IST-REx-ID: 2718 |
Barton NH, Paixao T. 2013. Can quantitative and population genetics help us understand evolutionary computation? Proceedings of the 15th annual conference on Genetic and evolutionary computation. GECCO: Genetic and evolutionary computation conference, 1573–1580.
[Submitted Version]
View
| Files available
| DOI
2013 | Journal Article | IST-REx-ID: 2720 |
Long H, Paixao T, Azevedo R, Zufall R. 2013. Accumulation of spontaneous mutations in the ciliate Tetrahymena thermophila. Genetics. 195(2), 527–540.
[Submitted Version]
View
| DOI
| Download Submitted Version (ext.)
| PubMed | Europe PMC
2013 | Conference Paper | IST-REx-ID: 2719
Paixao T, Barton NH. 2013. A variance decomposition approach to the analysis of genetic algorithms. Proceedings of the 15th annual conference on Genetic and evolutionary computation. GECCO: Genetic and evolutionary computation conference, 845–852.
View
| DOI
2013 | Journal Article | IST-REx-ID: 2853 |
Refardt D, Bergmiller T, Kümmerli R. 2013. Altruism can evolve when relatedness is low: Evidence from bacteria committing suicide upon phage infection. Proceedings of the Royal Society of London Series B Biological Sciences. 280(1759).
[Submitted Version]
View
| Files available
| DOI
| Download Submitted Version (ext.)
| PubMed | Europe PMC
2013 | Research Data Reference | IST-REx-ID: 9751 |
Refardt D, Bergmiller T, Kümmerli R. 2013. Data from: Altruism can evolve when relatedness is low: evidence from bacteria committing suicide upon phage infection, Dryad, 10.5061/dryad.b1q2n.
[Published Version]
View
| Files available
| DOI
| Download Published Version (ext.)
2012 | Journal Article | IST-REx-ID: 2302
Henzinger TA, Mateescu M. 2012. The propagation approach for computing biochemical reaction networks. IEEE ACM Transactions on Computational Biology and Bioinformatics. 10(2), 310–322.
View
| DOI
| PubMed | Europe PMC
2012 | Journal Article | IST-REx-ID: 2943 |
Hadizadeh Yazdi N, Guet CC, Johnson R, Marko J. 2012. Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions. Molecular Microbiology. 86(6), 1318–1333.
[Submitted Version]
View
| DOI
| Download Submitted Version (ext.)
2012 | Journal Article | IST-REx-ID: 3130 |
Bergmiller T, Ackermann M, Silander O. 2012. Patterns of evolutionary conservation of essential genes correlate with their compensability. PLoS Genetics. 8(6), e1002803.
[Published Version]
View
| Files available
| DOI
2011 | Journal Article | IST-REx-ID: 6496 |
Park H, Oikonomou P, Guet CC, Cluzel P. 2011. Noise underlies switching behavior of the bacterial flagellum. Biophysical Journal. 101(10), 2336–2340.
[Published Version]
View
| DOI
| Download Published Version (ext.)
| PubMed | Europe PMC
2010 | Conference Paper | IST-REx-ID: 3719 |
Feret J, Henzinger TA, Koeppl H, Petrov T. 2010. Lumpability abstractions of rule-based systems. MECBIC: Membrane Computing and Biologically Inspired Process Calculi, EPTCS, vol. 40, 142–161.
[Submitted Version]
View
| Files available
| arXiv
2010 | Conference Paper | IST-REx-ID: 3847 |
Didier F, Henzinger TA, Mateescu M, Wolf V. 2010. SABRE: A tool for the stochastic analysis of biochemical reaction networks. QEST: Quantitative Evaluation of Systems, 193–194.
[Submitted Version]
View
| Files available
| DOI
2009 | Conference Paper | IST-REx-ID: 3843 |
Didier F, Henzinger TA, Mateescu M, Wolf V. 2009. Fast adaptive uniformization of the chemical master equation. HIBI: High-Performance Computational Systems Biology vol. 4, 118–127.
[Submitted Version]
View
| Files available
| DOI