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48 Publications

2023 | Published | Journal Article | IST-REx-ID: 12672 | OA
Extensive de novo activity stabilizes epigenetic inheritance of CG methylation in Arabidopsis transposons
D.B. Lyons, A. Briffa, S. He, J. Choi, E. Hollwey, J. Colicchio, I. Anderson, X. Feng, M. Howard, D. Zilberman, Cell Reports 42 (2023).
[Published Version] View | Files available | DOI | WoS
 
2023 | Journal Article | IST-REx-ID: 13965 | OA
Concepts, mechanisms and implications of long-term epigenetic inheritance
E. Hollwey, A. Briffa, M. Howard, D. Zilberman, Current Opinion in Genetics and Development 81 (2023).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2023 | Published | Journal Article | IST-REx-ID: 14551 | OA
Millennia-long epigenetic fluctuations generate intragenic DNA methylation variance in Arabidopsis populations
A. Briffa, E. Hollwey, Z. Shahzad, J.D. Moore, D.B. Lyons, M. Howard, D. Zilberman, Cell Systems 14 (2023) 953–967.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
2021 | Published | Journal Article | IST-REx-ID: 10533 | OA [Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2021 | Published | Journal Article | IST-REx-ID: 9877 | OA
Divergence among rice cultivars reveals roles for transposition and epimutation in ongoing evolution of genomic imprinting
J.A. Rodrigues, P.-H. Hsieh, D. Ruan, T. Nishimura, M.K. Sharma, R. Sharma, X. Ye, N.D. Nguyen, S. Nijjar, P.C. Ronald, R.L. Fischer, D. Zilberman, Proceedings of the National Academy of Sciences 118 (2021).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2020 | Published | Journal Article | IST-REx-ID: 9526 | OA
DNA methylation and histone H1 jointly repress transposable elements and aberrant intragenic transcripts
J. Choi, D.B. Lyons, M.Y. Kim, J.D. Moore, D. Zilberman, Molecular Cell 77 (2020) 310–323.e7.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
2019 | Published | Journal Article | IST-REx-ID: 9460 | OA
DNA demethylation by ROS1a in rice vegetative cells promotes methylation in sperm
M.Y. Kim, A. Ono, S. Scholten, T. Kinoshita, D. Zilberman, T. Okamoto, R.L. Fischer, Proceedings of the National Academy of Sciences 116 (2019) 9652–9657.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
2019 | Published | Journal Article | IST-REx-ID: 9530 | OA
DNA methylation is maintained with high fidelity in the honey bee germline and exhibits global non-functional fluctuations during somatic development
K.D. Harris, J.P.B. Lloyd, K. Domb, D. Zilberman, A. Zemach, Epigenetics and Chromatin 12 (2019).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
2018 | Published | Journal Article | IST-REx-ID: 9471 | OA
FACT complex is required for DNA demethylation at heterochromatin during reproduction in Arabidopsis
J.M. Frost, M.Y. Kim, G.T. Park, P.-H. Hsieh, M. Nakamura, S.J.H. Lin, H. Yoo, J. Choi, Y. Ikeda, T. Kinoshita, Y. Choi, D. Zilberman, R.L. Fischer, Proceedings of the National Academy of Sciences 115 (2018) E4720–E4729.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
2017 | Published | Journal Article | IST-REx-ID: 9445 | OA [Published Version] View | Files available | DOI | PubMed | Europe PMC
 
2017 | Published | Journal Article | IST-REx-ID: 9506 | OA [Published Version] View | Files available | DOI | PubMed | Europe PMC
 
2016 | Published | Journal Article | IST-REx-ID: 9456 | OA
Mechanism for DNA transposons to generate introns on genomic scales
J.T. Huff, D. Zilberman, S.W. Roy, Nature 538 (2016) 533–536.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2016 | Published | Journal Article | IST-REx-ID: 9473 | OA
Arabidopsis male sexual lineage exhibits more robust maintenance of CG methylation than somatic tissues
P.-H. Hsieh, S. He, T. Buttress, H. Gao, M. Couchman, R.L. Fischer, D. Zilberman, X. Feng, Proceedings of the National Academy of Sciences 113 (2016) 15132–15137.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
2016 | Published | Journal Article | IST-REx-ID: 9477 | OA
DNA demethylation is initiated in the central cells of Arabidopsis and rice
K. Park, M.Y. Kim, M. Vickers, J.-S. Park, Y. Hyun, T. Okamoto, D. Zilberman, R.L. Fischer, X. Feng, Y. Choi, S. Scholten, Proceedings of the National Academy of Sciences 113 (2016) 15138–15143.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
2015 | Published | Journal Article | IST-REx-ID: 9532 | OA
Evolution and function of genomic imprinting in plants
J.A. Rodrigues, D. Zilberman, Genes and Development 29 (2015) 2517–2531.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
2014 | Published | Journal Article | IST-REx-ID: 9458 | OA [Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
2014 | Published | Journal Article | IST-REx-ID: 9479 | OA
The AAA-ATPase molecular chaperone Cdc48/p97 disassembles sumoylated centromeres, decondenses heterochromatin, and activates ribosomal RNA genes
Z. Mérai, N. Chumak, M. García-Aguilar, T.-F. Hsieh, T. Nishimura, V.K. Schoft, J. Bindics, L. Ślusarz, S. Arnoux, S. Opravil, K. Mechtler, D. Zilberman, R.L. Fischer, H. Tamaru, Proceedings of the National Academy of Sciences 111 (2014) 16166–16171.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
2014 | Published | Journal Article | IST-REx-ID: 9519
DNA methylation as a system of plant genomic immunity
M.Y. Kim, D. Zilberman, Trends in Plant Science 19 (2014) 320–326.
View | DOI | PubMed | Europe PMC
 
2013 | Published | Journal Article | IST-REx-ID: 9459 | OA
The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin
A. Zemach, M.Y. Kim, P.-H. Hsieh, D. Coleman-Derr, L. Eshed-Williams, K. Thao, S.L. Harmer, D. Zilberman, Cell 153 (2013) 193–205.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
2013 | Published | Journal Article | IST-REx-ID: 9481 | OA
Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm
J.A. Rodrigues, R. Ruan, T. Nishimura, M.K. Sharma, R. Sharma, P.C. Ronald, R.L. Fischer, D. Zilberman, Proceedings of the National Academy of Sciences 110 (2013) 7934–7939.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

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