Lyons, David B., Amy Briffa, Shengbo He, Jaemyung Choi, Elizabeth Hollwey, Jack Colicchio, Ian Anderson, Xiaoqi Feng, Martin Howard, and Daniel Zilberman. “Extensive de Novo Activity Stabilizes Epigenetic Inheritance of CG Methylation in Arabidopsis Transposons.”https://doi.org/10.1016/j.celrep.2023.112132__Cell Reports. Elsevier, 2023.https://doi.org/10.1016/j.celrep.2023.112132 .

Briffa, Amy, Elizabeth Hollwey, Zaigham Shahzad, Jonathan D. Moore, David B. Lyons, Martin Howard, and Daniel Zilberman. “Millennia-Long Epigenetic Fluctuations Generate Intragenic DNA Methylation Variance in Arabidopsis Populations.”https://doi.org/10.1016/j.cels.2023.10.007__Cell Systems. Elsevier, 2023.https://doi.org/10.1016/j.cels.2023.10.007 .

Hollwey, Elizabeth, Amy Briffa, Martin Howard, and Daniel Zilberman. “Concepts, Mechanisms and Implications of Long-Term Epigenetic Inheritance.”https://doi.org/10.1016/j.gde.2023.102087__Current Opinion in Genetics and Development. Elsevier, 2023.https://doi.org/10.1016/j.gde.2023.102087 .

Rodrigues, Jessica A., Ping-Hung Hsieh, Deling Ruan, Toshiro Nishimura, Manoj K. Sharma, Rita Sharma, XinYi Ye, et al. “Divergence among Rice Cultivars Reveals Roles for Transposition and Epimutation in Ongoing Evolution of Genomic Imprinting.”https://doi.org/10.1073/pnas.2104445118__Proceedings of the National Academy of Sciences. National Academy of Sciences, 2021.https://doi.org/10.1073/pnas.2104445118 .

Choi, Jaemyung, David B Lyons, and Daniel Zilberman. “Histonehttps://doi.org/10.7554/elife.72676__Prevents Non-CG Methylation-Mediated Small RNA Biogenesis in Arabidopsis Heterochromatin.”https://doi.org/10.7554/elife.72676__ELife. eLife Sciences Publications, 2021.https://doi.org/10.7554/elife.72676 .

Choi, Jaemyung, David B. Lyons, M. Yvonne Kim, Jonathan D. Moore, and Daniel Zilberman. “DNA Methylation and Histonehttps://doi.org/10.1016/j.molcel.2019.10.011__Jointly Repress Transposable Elements and Aberrant Intragenic Transcripts.”https://doi.org/10.1016/j.molcel.2019.10.011__Molecular Cell. Elsevier, 2020.https://doi.org/10.1016/j.molcel.2019.10.011 .

Kim, M. Yvonne, Akemi Ono, Stefan Scholten, Tetsu Kinoshita, Daniel Zilberman, Takashi Okamoto, and Robert L. Fischer. “DNA Demethylation by ROa in Rice Vegetative Cells Promotes Methylation in Sperm.”https://doi.org/10.1073/pnas.1821435116__Proceedings of the National Academy of Sciences. National Academy of Sciences, 2019.https://doi.org/10.1073/pnas.1821435116 .

Harris, Keith D., James P. B. Lloyd, Katherine Domb, Daniel Zilberman, and Assaf Zemach. “DNA Methylation Is Maintained with High Fidelity in the Honey Bee Germline and Exhibits Global Non-Functional Fluctuations during Somatic Development.”https://doi.org/10.1186/s13072-019-0307-4__Epigenetics and Chromatin. Springer Nature, 2019.https://doi.org/10.1186/s13072-019-0307-4 .

Frost, Jennifer M., M. Yvonne Kim, Guen Tae Park, Ping-Hung Hsieh, Miyuki Nakamura, Samuel J. H. Lin, Hyunjin Yoo, et al. “FACT Complex Is Required for DNA Demethylation at Heterochromatin during Reproduction in Arabidopsis.”https://doi.org/10.1073/pnas.1713333115__Proceedings of the National Academy of Sciences. National Academy of Sciences, 2018.https://doi.org/10.1073/pnas.1713333115 .

Lyons, David B, and Daniel Zilberman. “DDM1 and Lsh Remodelers Allow Methylation of DNA Wrapped in Nucleosomes.”https://doi.org/10.7554/elife.30674__ELife. eLife Sciences Publications, 2017.https://doi.org/10.7554/elife.30674 .

Zilberman, Daniel. “An Evolutionary Case for Functional Gene Body Methylation in Plants and Animals.”https://doi.org/10.1186/s13059-017-1230-2__Genome Biology. Springer Nature, 2017.https://doi.org/10.1186/s13059-017-1230-2 .

Huff, Jason T., Daniel Zilberman, and Scott W. Roy. “Mechanism for DNA Transposons to Generate Introns on Genomic Scales.”https://doi.org/10.1038/nature20110__Nature. Springer Nature , 2016.https://doi.org/10.1038/nature20110 .

Park, Kyunghyuk, M. Yvonne Kim, Martin Vickers, Jin-Sup Park, Youbong Hyun, Takashi Okamoto, Daniel Zilberman, et al. “DNA Demethylation Is Initiated in the Central Cells of Arabidopsis and Rice.”https://doi.org/10.1073/pnas.1619047114__Proceedings of the National Academy of Sciences. National Academy of Sciences, 2016.https://doi.org/10.1073/pnas.1619047114 .

Hsieh, Ping-Hung, Shengbo He, Toby Buttress, Hongbo Gao, Matthew Couchman, Robert L. Fischer, Daniel Zilberman, and Xiaoqi Feng. “Arabidopsis Male Sexual Lineage Exhibits More Robust Maintenance of CG Methylation than Somatic Tissues.”https://doi.org/10.1073/pnas.1619074114__Proceedings of the National Academy of Sciences. National Academy of Sciences, 2016.https://doi.org/10.1073/pnas.1619074114 .

Rodrigues, Jessica A., and Daniel Zilberman. “Evolution and Function of Genomic Imprinting in Plants.”https://doi.org/10.1101/gad.269902.115__Genes and Development. Cold Spring Harbor Laboratory Press, 2015.https://doi.org/10.1101/gad.269902.115 .

Kim, M. Yvonne, and Daniel Zilberman. “DNA Methylation as a System of Plant Genomic Immunity.”https://doi.org/10.1016/j.tplants.2014.01.014__Trends in Plant Science. Elsevier, 2014.https://doi.org/10.1016/j.tplants.2014.01.014 .

Huff, Jason T., and Daniel Zilberman. “Dnmt1-Independent CG Methylation Contributes to Nucleosome Positioning in Diverse Eukaryotes.”https://doi.org/10.1016/j.cell.2014.01.029__Cell. Elsevier, 2014.https://doi.org/10.1016/j.cell.2014.01.029 .

Mérai, Zsuzsanna, Nina Chumak, Marcelina García-Aguilar, Tzung-Fu Hsieh, Toshiro Nishimura, Vera K. Schoft, János Bindics, et al. “The AAA-ATPase Molecular Chaperone Cd/ Disassembles Sumoylated Centromeres, Decondenses Heterochromatin, and Activates Ribosomal RNA Genes.”https://doi.org/10.1073/pnas.1418564111__Proceedings of the National Academy of Sciences. National Academy of Sciences, 2014.https://doi.org/10.1073/pnas.1418564111 .

Zemach, Assaf, M. Yvonne Kim, Ping-Hung Hsieh, Devin Coleman-Derr, Leor Eshed-Williams, Ka Thao, Stacey L. Harmer, and Daniel Zilberman. “The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access -Containing Heterochromatin.”https://doi.org/10.1016/j.cell.2013.02.033__Cell. Elsevier, 2013.https://doi.org/10.1016/j.cell.2013.02.033 .

Rodrigues, Jessica A., Randy Ruan, Toshiro Nishimura, Manoj K. Sharma, Rita Sharma, Pamela C Ronald, Robert L. Fischer, and Daniel Zilberman. “Imprinted Expression of Genes and Small RNA Is Associated with Localized Hypomethylation of the Maternal Genome in Rice Endosperm.”https://doi.org/10.1073/pnas.1306164110__Proceedings of the National Academy of Sciences. National Academy of Sciences, 2013.https://doi.org/10.1073/pnas.1306164110 .