The human promoter methylome
D. Zilberman, The Human Promoter Methylome, Nature Publishing Group, 2007.
LibreCat: https://research-explorer.ista.ac.at/record/9504
DOI: 10.1038/ng0407-442
PMID: 17392803

Genome-wide analysis of DNA methylation patterns
D. Zilberman, S. Henikoff, Development 134 (2007) 3959–3965.
LibreCat: https://research-explorer.ista.ac.at/record/9524
DOI: 10.1242/dev.001131
PMID: 17928417

Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
D. Zilberman, M. Gehring, R.K. Tran, T. Ballinger, S. Henikoff, Nature Genetics 39 (2006) 61–69.
LibreCat: https://research-explorer.ista.ac.at/record/9505
DOI: 10.1038/ng1929
PMID: 17128275

DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes
R.K. Tran, J.G. Henikoff, D. Zilberman, R.F. Ditt, S.E. Jacobsen, S. Henikoff, Current Biology 15 (2005) 154–159.
LibreCat: https://research-explorer.ista.ac.at/record/9491
DOI: 10.1016/j.cub.2005.01.008
PMID: 15668172 

Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis
R.K. Tran, D. Zilberman, C. de Bustos, R.F. Ditt, J.G. Henikoff, A.M. Lindroth, J. Delrow, T. Boyle, S. Kwong, T.D. Bryson, S.E. Jacobsen, S. Henikoff, Genome Biology 6 (2005).
LibreCat: https://research-explorer.ista.ac.at/record/9514
DOI: 10.1186/gb-2005-6-11-r90
PMID: 16277745

Epigenetic inheritance in Arabidopsis: Selective silence
D. Zilberman, S. Henikoff, Current Opinion in Genetics and Development 15 (2005) 557–562.
LibreCat: https://research-explorer.ista.ac.at/record/9529
DOI: 10.1016/j.gde.2005.07.002
PMID: 16085410

Role of Arabidopsis ARGONAUT in RNA-directed DNA methylation triggered by inverted repeats
D. Zilberman, X. Cao, L.K. Johansen, Z. Xie, J.C. Carrington, S.E. Jacobsen, Current Biology 14 (2004) 1214–1220.
LibreCat: https://research-explorer.ista.ac.at/record/9493
DOI: 10.1016/j.cub.2004.06.055
PMID: 15242620 

Genetic and functional diversification of small RNA pathways in plants
Z. Xie, L.K. Johansen, A.M. Gustafson, K.D. Kasschau, A.D. Lellis, D. Zilberman, S.E. Jacobsen, J.C. Carrington, PLoS Biology 2 (2004) 0642–0652.
LibreCat: https://research-explorer.ista.ac.at/record/9517
DOI: 10.1371/journal.pbio.0020104
PMID: 15024409

Silencing of transposons in plant genomes: kick them when they're down
D. Zilberman, S. Henikoff, Genome Biology 5 (2004).
LibreCat: https://research-explorer.ista.ac.at/record/9511
DOI: 10.1186/gb-2004-5-12-249
PMID: 15575975

RNA silencing genes control de novo DNA methylation
S.W.-L. Chan, D. Zilberman,  Zhixin Xie,  Lisa K. Johansen, J.C. Carrington, S.E. Jacobsen, Science 303 (2004) 1336.
LibreCat: https://research-explorer.ista.ac.at/record/9454
DOI: 10.1126/science.1095989
PMID: 14988555

Role of the DRM and CM methyltransferases in RNA-directed DNA methylation
X. Cao, W. Aufsatz, D. Zilberman, M.F. Mette, M.S. Huang, M. Matzke, S.E. Jacobsen, Current Biology 13 (2003) 2212–2217.
LibreCat: https://research-explorer.ista.ac.at/record/9495
DOI: 10.1016/j.cub.2003.11.052
PMID: 14680640

ARGONAUT control of locus-specific siRNA accumulation and DNA and histone methylation
D. Zilberman,  Xiaofeng Cao, S.E. Jacobsen, Science 299 (2003) 716–719.
LibreCat: https://research-explorer.ista.ac.at/record/9455
DOI: 10.1126/science.1079695
PMID: 12522258

Requirement of CHROMOMETHYLAS for maintenance of CpXpG methylation
A.M. Lindroth, X. Cao, J.P. Jackson, D. Zilberman, C.M. McCallum, S. Henikoff, S.E. Jacobsen, Science 292 (2001) 2077–2080.
LibreCat: https://research-explorer.ista.ac.at/record/9444
DOI: 10.1126/science.1059745
PMID: 11349138