Feng X, Zilberman D, Dickinson H. A conversation across generations: Soma-germ cell crosstalk in plants. Developmental Cell. 2013;24(3):215-225. doi:10.1016/j.devcel.2013.01.014
LibreCat: https://research-explorer.ista.ac.at/record/9520
DOI: 10.1016/j.devcel.2013.01.014
PMID: 23410937

Ibarra CA, Feng X, Schoft VK, et al. Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes. Science. 2012;337(6100):1360-1364. doi:10.1126/science.1224839
LibreCat: https://research-explorer.ista.ac.at/record/9451
DOI: 10.1126/science.1224839
PMID: 22984074

Coleman-Derr D, Zilberman D. DNA methylation, A.Z, and the regulation of constitutive expression. Cold Spring Harbor Symposia on Quantitative Biology. 2012;77:147-154. doi:10.1101/sqb.2012.77.014944
LibreCat: https://research-explorer.ista.ac.at/record/9535
DOI: 10.1101/sqb.2012.77.014944
PMID: 23250988

Kim SY, Lee J, Eshed-Williams L, Zilberman D, Sung ZR. EM and PR cooperate to repress key regulators of Arabidopsis development. PLoS Genetics. 2012;8(3). doi:10.1371/journal.pgen.1002512
LibreCat: https://research-explorer.ista.ac.at/record/9499
DOI: 10.1371/journal.pgen.1002512
PMID: 22457632

Coleman-Derr D, Zilberman D. Deposition of histone variant A.Z within gene bodies regulates responsive genes. PLoS Genetics. 2012;8(10). doi:10.1371/journal.pgen.1002988
LibreCat: https://research-explorer.ista.ac.at/record/9497
DOI: 10.1371/journal.pgen.1002988
PMID: 23071449

Huff JT, Zilberman D. Regulation of biological accuracy, precision, and memory by plant chromatin organization. Current Opinion in Genetics and Development. 2012;22(2):132-138. doi:10.1016/j.gde.2012.01.007
LibreCat: https://research-explorer.ista.ac.at/record/9528
DOI: 10.1016/j.gde.2012.01.007
PMID: 22336527

Hsieh T-F, Shin J, Uzawa R, et al. Regulation of imprinted gene expression in Arabidopsis endosperm. Proceedings of the National Academy of Sciences. 2011;108(5):1755-1762. doi:10.1073/pnas.1019273108
LibreCat: https://research-explorer.ista.ac.at/record/9483
DOI: 10.1073/pnas.1019273108
PMID: 21257907

Zilberman D. Balancing Parental Contributions in Plant Embryonic Gene Activation. Vol 20. Elsevier; 2011:735-736. doi:10.1016/j.devcel.2011.05.018
LibreCat: https://research-explorer.ista.ac.at/record/9522
DOI: 10.1016/j.devcel.2011.05.018
PMID: 21664571

Zemach A, Kim MY, Silva P, et al. Local DNA hypomethylation activates genes in rice endosperm. Proceedings of the National Academy of Sciences. 2010;107(43):18729-18734. doi:10.1073/pnas.1009695107
LibreCat: https://research-explorer.ista.ac.at/record/9485
DOI: 10.1073/pnas.1009695107
PMID: 20937895

Zemach A, Zilberman D. Evolution of eukaryotic DNA methylation and the pursuit of safer sex. Current Biology. 2010;20(17):0-5. doi:10.1016/j.cub.2010.07.007
LibreCat: https://research-explorer.ista.ac.at/record/9489
DOI: 10.1016/j.cub.2010.07.007
PMID: 20833323

Zemach A, McDaniel IE, Silva P, Zilberman D. Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science. 2010;328(5980):916-919. doi:10.1126/science.1186366
LibreCat: https://research-explorer.ista.ac.at/record/9452
DOI: 10.1126/science.1186366
PMID: 20395474 

Hsieh T-F, Ibarra CA, Silva P, et al. Genome-wide demethylation of Arabidopsis endosperm. Science. 2009;324(5933):1451-1454. doi:10.1126/science.1172417
LibreCat: https://research-explorer.ista.ac.at/record/9453
DOI: 10.1126/science.1172417
PMID: 19520962

Zilberman D. The evolving functions of DNA methylation. Current Opinion in Plant Biology. 2008;11(5):554-559. doi:10.1016/j.pbi.2008.07.004
LibreCat: https://research-explorer.ista.ac.at/record/9537
DOI: 10.1016/j.pbi.2008.07.004
PMID: 18774331

Zilberman D, Coleman-Derr D, Ballinger T, Henikoff S. Histone A.Z and DNA methylation are mutually antagonistic chromatin marks. Nature. 2008;456(7218):125-129. doi:10.1038/nature07324
LibreCat: https://research-explorer.ista.ac.at/record/9457
DOI: 10.1038/nature07324
PMID: 18815594

Penterman J, Zilberman D, Huh JH, Ballinger T, Henikoff S, Fischer RL. DNA demethylation in the Arabidopsis genome. Proceedings of the National Academy of Sciences. 2007;104(16):6752-6757. doi:10.1073/pnas.0701861104
LibreCat: https://research-explorer.ista.ac.at/record/9487
DOI: 10.1073/pnas.0701861104
PMID: 17409185

Zilberman D. The Human Promoter Methylome. Vol 39. Nature Publishing Group; 2007:442-443. doi:10.1038/ng0407-442
LibreCat: https://research-explorer.ista.ac.at/record/9504
DOI: 10.1038/ng0407-442
PMID: 17392803

Zilberman D, Henikoff S. Genome-wide analysis of DNA methylation patterns. Development. 2007;134(22):3959-3965. doi:10.1242/dev.001131
LibreCat: https://research-explorer.ista.ac.at/record/9524
DOI: 10.1242/dev.001131
PMID: 17928417

Zilberman D, Gehring M, Tran RK, Ballinger T, Henikoff S. Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nature Genetics. 2006;39(1):61-69. doi:10.1038/ng1929
LibreCat: https://research-explorer.ista.ac.at/record/9505
DOI: 10.1038/ng1929
PMID: 17128275

Tran RK, Henikoff JG, Zilberman D, Ditt RF, Jacobsen SE, Henikoff S. DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes. Current Biology. 2005;15(2):154-159. doi:10.1016/j.cub.2005.01.008
LibreCat: https://research-explorer.ista.ac.at/record/9491
DOI: 10.1016/j.cub.2005.01.008
PMID: 15668172 

Tran RK, Zilberman D, de Bustos C, et al. Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis. Genome Biology. 2005;6(11). doi:10.1186/gb-2005-6-11-r90
LibreCat: https://research-explorer.ista.ac.at/record/9514
DOI: 10.1186/gb-2005-6-11-r90
PMID: 16277745