A hybrid pathway for self-sustained luminescence
K.A. Palkina, T.A. Karataeva, M.M. Perfilov, L.I. Fakhranurova, N.M. Markina, L. Gonzalez Somermeyer, E. Garcia-Perez, M. Vazquez-Vilar, M. Rodriguez-Rodriguez, V. Vazquez-Vilriales, E.S. Shakhova, T. Mitiouchkina, O.A. Belozerova, S.I. Kovalchuk, A. Alekberova, A.K. Malyshevskaia, E.N. Bugaeva, E.B. Guglya, A. Balakireva, N. Sytov, A. Bezlikhotnova, D.I. Boldyreva, V.V. Babenko, F. Kondrashov, V.V. Choob, D. Orzaez, I.V. Yampolsky, A.S. Mishin, K.S. Sarkisyan, Science Advances 10 (2024).
LibreCat: https://research-explorer.ista.ac.at/record/15179
DOI: 10.1126/sciadv.adk1992

Discovery of recessive effect of human polymerase ;4 proofreading deficiency through mutational analysis of POL-mutated normal and cancer cells
M.A. Andrianova, V.B. Seplyarskiy, M. Terradas, A.B. Sánchez-Heras, P. Mur, J.L. Soto, G. Aiza, E. Borràs, F. Kondrashov, A.S. Kondrashov, G.A. Bazykin, L. Valle, European Journal of Human Genetics (2024).
LibreCat: https://research-explorer.ista.ac.at/record/15362
DOI: 10.1038/s41431-024-01598-8
PMID: 38658779

Using AlphaFold to predict the impact of single mutations on protein stability and function
M.A. Pak, K.A. Markhieva, M.S. Novikova, D.S. Petrov, I.S. Vorobyev, E. Maksimova, F. Kondrashov, D.N. Ivankov, PLoS ONE 18 (2023).
LibreCat: https://research-explorer.ista.ac.at/record/12758
DOI: 10.1371/journal.pone.0282689
WoS: 000985134400106

Divergent molecular signatures in fish Bouncer proteins define cross-fertilization boundaries
K.R.B. Gert, K. Panser, J. Surm, B.S. Steinmetz, A. Schleiffer, L. Jovine, Y. Moran, F. Kondrashov, A. Pauli, Nature Communications 14 (2023).
LibreCat: https://research-explorer.ista.ac.at/record/13164
DOI: 10.1038/s41467-023-39317-4
WoS: 001048208600023

Scientists without borders: Lessons from Ukraine
W. Wolfsberger, K. Chhugani, K. Shchubelka, A. Frolova, Y. Salyha, O. Zlenko, M. Arych, D. Dziuba, A. Parkhomenko, V. Smolanka, Z.H. Gümüf, E. Sezgin, A. Diaz-Lameiro, V.R. Toth, M. Maci, E. Bortz, F. Kondrashov, P.M. Morton, P.P. abaj, V. Romero, J. Hlávka, S. Mangul, T.K. Oleksyk, GigaScience 12 (2023).
LibreCat: https://research-explorer.ista.ac.at/record/13976
DOI: 10.1093/gigascience/giad045
WoS: 001081086100001
PMID: 37496156

Machine learning and phylogenetic analysis allow for predicting antibiotic resistance in M. tuberculosis
A. Yurtseven, S. Buyanova, A.A.A. Agrawal, O. Bochkareva, O.V.V. Kalinina, BMC Microbiology 23 (2023).
LibreCat: https://research-explorer.ista.ac.at/record/14716
DOI: 10.1186/s12866-023-03147-7
PMID: 38124060

PaReBrick: PArallel REarrangements and BReaks identification toolkit
A. Zabelkin, Y. Yakovleva, O. Bochkareva, N. Alexeev, Bioinformatics 38 (2022) 357–363.
LibreCat: https://research-explorer.ista.ac.at/record/10927
DOI: 10.1093/bioinformatics/btab691
WoS: 000743380100008

Unlocking capacities of genomics for the COVID-19 response and future pandemics
S. Knyazev, K. Chhugani, V. Sarwal, R. Ayyala, H. Singh, S. Karthikeyan, D. Deshpande, P.I. Baykal, Z. Comarova, A. Lu, Y. Porozov, T.I. Vasylyeva, J.O. Wertheim, B.T. Tierney, C.Y. Chiu, R. Sun, A. Wu, M.S. Abedalthagafi, V.M. Pak, S.H. Nagaraj, A.L. Smith, P. Skums, B. Pasaniuc, A. Komissarov, C.E. Mason, E. Bortz, P. Lemey, F. Kondrashov, N. Beerenwinkel, T.T.Y. Lam, N.C. Wu, A. Zelikovsky, R. Knight, K.A. Crandall, S. Mangul, Nature Methods 19 (2022) 374–380.
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DOI: 10.1038/s41592-022-01444-z
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PMID: 35396471

Chromosome-encoded IpaH ubiquitin ligases indicate non-human enteroinvasive Escherichia
N. Dranenko, M. Tutukina, M. Gelfand, F. Kondrashov, O. Bochkareva, Scientific Reports 12 (2022).
LibreCat: https://research-explorer.ista.ac.at/record/11344
DOI: 10.1038/s41598-022-10827-3
WoS: 000788639400032
PMID: 35477739

Heterogeneity of the GFP fitness landscape and data-driven protein design
L. Gonzalez Somermeyer, A. Fleiss, A.S. Mishin, N.G. Bozhanova, A.A. Igolkina, J. Meiler, M.-E. Alaball Pujol, E.V. Putintseva, K.S. Sarkisyan, F. Kondrashov, ELife 11 (2022).
LibreCat: https://research-explorer.ista.ac.at/record/11448
DOI: 10.7554/elife.75842
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A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis
R. Zhang, R. Kuo, M. Coulter, C.P.G. Calixto, J.C. Entizne, W. Guo, Y. Marquez, L. Milne, S. Riegler, A. Matsui, M. Tanaka, S. Harvey, Y. Gao, T. Wießner-Kroh, A. Paniagua, M. Crespi, K. Denby, A.B. Hur, E. Huq, M. Jantsch, A. Jarmolowski, T. Koester, S. Laubinger, Q.Q. Li, L. Gu, M. Seki, D. Staiger, R. Sunkar, Z. Szweykowska-Kulinska, S.L. Tu, A. Wachter, R. Waugh, L. Xiong, X.N. Zhang, A. Conesa, A.S.N. Reddy, A. Barta, M. Kalyna, J.W.S. Brown, Genome Biology 23 (2022).
LibreCat: https://research-explorer.ista.ac.at/record/11587
DOI: 10.1186/s13059-022-02711-0
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Anti-A humoral immunity does not compromise SARS-COV-2 neutralizing antibody responses following Gam-COVID-Vac booster vaccination
M.G. Byazrova, E.A. Astakhova, A. Minnegalieva, M.M. Sukhova, A.A. Mikhailov, A.G. Prilipov, A.A. Gorchakov, A.V. Filatov, Npj Vaccines 7 (2022).
LibreCat: https://research-explorer.ista.ac.at/record/12131
DOI: 10.1038/s41541-022-00566-x
WoS: 000884278600004
PMID: 36379998

Atypical enteropathogenic E. coli are associated with disease activity in ulcerative colitis
M. Baumgartner, R. Zirnbauer, S. Schlager, D. Mertens, N. Gasche, B. Sladek, C. Herbold, O. Bochkareva, V. Emelianenko, H. Vogelsang, M. Lang, A. Klotz, B. Moik, A. Makristathis, D. Berry, S. Dabsch, V. Khare, C. Gasche, Gut Microbes 14 (2022).
LibreCat: https://research-explorer.ista.ac.at/record/12173
DOI: 10.1080/19490976.2022.2143218
WoS: 000889180100001

Remote opportunities for scholars in Ukraine
K. Chhugani, A. Frolova, Y. Salyha, A. Fiscutean, O. Zlenko, S. Reinsone, W.W. Wolfsberger, O.V. Ivashchenko, M. Maci, D. Dziuba, A. Parkhomenko, E. Bortz, F. Kondrashov, P.P. abaj, V. Romero, J. Hlávka, T.K. Oleksyk, S. Mangul, Science 378 (2022) 1285–1286.
LibreCat: https://research-explorer.ista.ac.at/record/12116
DOI: 10.1126/science.adg0797
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Semi-device-independent random number generation with flexible assumptions
M. Pivoluska, M. Plesch, M. Farkas, N. Ruzickova, C. Flegel, N.H. Valencia, W. Mccutcheon, M. Malik, E.A. Aguilar, Npj Quantum Information 7 (2021).
LibreCat: https://research-explorer.ista.ac.at/record/9255
DOI: 10.1038/s41534-021-00387-1
WoS: 000629173100001

High rates of genome rearrangements and pathogenicity of Shigella spp
Z. Seferbekova, A. Zabelkin, Y. Yakovleva, R. Afasizhev, N.O. Dranenko, N. Alexeev, M.S. Gelfand, O. Bochkareva, Frontiers in Microbiology 12 (2021).
LibreCat: https://research-explorer.ista.ac.at/record/9380
DOI: 10.3389/fmicb.2021.628622
WoS: 000643713300001

The limits of normal approximation for adult height
S.A. Slavskii, I.A. Kuznetsov, T.I. Shashkova, G.A. Bazykin, T.I. Axenovich, F. Kondrashov, Y.S. Aulchenko, European Journal of Human Genetics 29 (2021) 1082–1091.
LibreCat: https://research-explorer.ista.ac.at/record/9910
DOI: 10.1038/s41431-021-00836-7
WoS: 000625853200001
PMID: 33664501

Rates of SARS-CoV-2 transmission and vaccination impact the fate of vaccine-resistant strains
S. Rella, Y.A. Kulikova, E.T. Dermitzakis, F. Kondrashov, Scientific Reports 11 (2021).
LibreCat: https://research-explorer.ista.ac.at/record/9905
DOI: 10.1038/s41598-021-95025-3
WoS: 000683329100001
PMID: 34330988

Alternative splicing and DNA damage response in plants
B.A. Nimeth, S. Riegler, M. Kalyna, Frontiers in Plant Science 11 (2020).
LibreCat: https://research-explorer.ista.ac.at/record/7603
DOI: 10.3389/fpls.2020.00091
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The IYPT and the 'Ring Oiler' problem
M. Plesch, S. Plesník, N. Ruzickova, European Journal of Physics 41 (2020).
LibreCat: https://research-explorer.ista.ac.at/record/7622
DOI: 10.1088/1361-6404/ab6414
WoS: 000537425400001
arXiv: 1910.03290