Yurtseven, A., Buyanova, S., Agrawal, A. A. A., Bochkareva, O., &; Kalinina, O. V. V. (2023). Machine learning and phylogenetic analysis allow for predicting antibiotic resistance in M. tuberculosis. BMC Microbiology. Springer Nature.https://doi.org/10.1186/s12866-023-03147-7 

Zabelkin, A., Yakovleva, Y., Bochkareva, O., &; Alexeev, N. (2022). PaReBrick: PArallel REarrangements and BReaks identification toolkit. Bioinformatics. Oxford Academic.https://doi.org/10.1093/bioinformatics/btab691 

Knyazev, S., Chhugani, K., Sarwal, V., Ayyala, R., Singh, H., Karthikeyan, S.,https://doi.org/10.1038/s41592-022-01444-z__Mangul, S. (2022). Unlocking capacities of genomics for the COVID-19 response and future pandemics. Nature Methods. Springer Nature.https://doi.org/10.1038/s41592-022-01444-z 

Dranenko, N., Tutukina, M., Gelfand, M., Kondrashov, F., &; Bochkareva, O. (2022). Chromosome-encoded IpaH ubiquitin ligases indicate non-human enteroinvasive Escherichia. Scientific Reports. Springer Nature.https://doi.org/10.1038/s41598-022-10827-3 

Gonzalez Somermeyer, L., Fleiss, A., Mishin, A. S., Bozhanova, N. G., Igolkina, A. A., Meiler, J.,https://doi.org/10.7554/elife.75842__Kondrashov, F. (2022). Heterogeneity of the GFP fitness landscape and data-driven protein design. ELife. eLife Sciences Publications.https://doi.org/10.7554/elife.75842 

Zhang, R., Kuo, R., Coulter, M., Calixto, C. P. G., Entizne, J. C., Guo, W.,https://doi.org/10.1186/s13059-022-02711-0__Brown, J. W. S. (2022). A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis. Genome Biology. BioMed Central.https://doi.org/10.1186/s13059-022-02711-0 

Byazrova, M. G., Astakhova, E. A., Minnegalieva, A., Sukhova, M. M., Mikhailov, A. A., Prilipov, A. G.,https://doi.org/10.1038/s41541-022-00566-x__Filatov, A. V. (2022). Anti-Ad26 humoral immunity does not compromise SARS-COV-2 neutralizing antibody responses following Gam-COVID-Vac booster vaccination. Npj Vaccines. Springer Nature.https://doi.org/10.1038/s41541-022-00566-x 

Baumgartner, M., Zirnbauer, R., Schlager, S., Mertens, D., Gasche, N., Sladek, B.,https://doi.org/10.1080/19490976.2022.2143218__Gasche, C. (2022). Atypical enteropathogenic E. coli are associated with disease activity in ulcerative colitis. Gut Microbes. Taylor &; Francis.https://doi.org/10.1080/19490976.2022.2143218 

Chhugani, K., Frolova, A., Salyha, Y., Fiscutean, A., Zlenko, O., Reinsone, S.,https://doi.org/10.1126/science.adg0797__Mangul, S. (2022). Remote opportunities for scholars in Ukraine. Science. American Association for the Advancement of Science.https://doi.org/10.1126/science.adg0797 

Pivoluska, M., Plesch, M., Farkas, M., Ruzickova, N., Flegel, C., Valencia, N. H.,https://doi.org/10.1038/s41534-021-00387-1__Aguilar, E. A. (2021). Semi-device-independent random number generation with flexible assumptions. Npj Quantum Information. Springer Nature.https://doi.org/10.1038/s41534-021-00387-1 

Seferbekova, Z., Zabelkin, A., Yakovleva, Y., Afasizhev, R., Dranenko, N. O., Alexeev, N.,https://doi.org/10.3389/fmicb.2021.628622__Bochkareva, O. (2021). High rates of genome rearrangements and pathogenicity of Shigella spp. Frontiers in Microbiology. Frontiers.https://doi.org/10.3389/fmicb.2021.628622 

Slavskii, S. A., Kuznetsov, I. A., Shashkova, T. I., Bazykin, G. A., Axenovich, T. I., Kondrashov, F., &; Aulchenko, Y. S. (2021). The limits of normal approximation for adult height. European Journal of Human Genetics. Springer Nature.https://doi.org/10.1038/s41431-021-00836-7 

Rella, S., Kulikova, Y. A., Dermitzakis, E. T., &; Kondrashov, F. (2021). Rates of SARS-CoV-2 transmission and vaccination impact the fate of vaccine-resistant strains. Scientific Reports. Springer Nature.https://doi.org/10.1038/s41598-021-95025-3 

Nimeth, B. A., Riegler, S., &; Kalyna, M. (2020). Alternative splicing and DNA damage response in plants. Frontiers in Plant Science. Frontiers.https://doi.org/10.3389/fpls.2020.00091 

Plesch, M., Plesník, S., &; Ruzickova, N. (2020). The IYPT and the “Ring Oiler”https://doi.org/10.1088/1361-6404/ab6414__problem. European Journal of Physics. IOP Publishing.https://doi.org/10.1088/1361-6404/ab6414 

Uroshlev, L. A., Abdullaev, E. T., Umarova, I. R., Il’Icheva, I. A., Panchenko, L. A., Polozov, R. V.,https://doi.org/10.1038/s41598-020-65406-1__Grokhovsky, S. L. (2020). A method for identification of the methylation level of CpG islands from NGS data. Scientific Reports. Springer Nature.https://doi.org/10.1038/s41598-020-65406-1 

Mukba, S. A., Vlasov, P., Kolosov, P. M., Shuvalova, E. Y., Egorova, T. V., &; Alkalaeva, E. Z. (2020). Expanding the genetic code: Unnatural base pairs in biological systems. Molecular Biology. Springer Nature.https://doi.org/10.1134/S0026893320040111 

Mukba, S. A., Vlasov, P., Kolosov, P. M., Shuvalova, E. Y., Egorova, T. V., &; Alkalaeva, E. Z. (2020). Expanding the genetic code: Unnatural base pairs in biological systems. Molekuliarnaia biologiia. Russian Academy of Sciences.https://doi.org/10.31857/S0026898420040126 

Esteban, L. A., Lonishin, L. R., Bobrovskiy, D. M., Leleytner, G., Bogatyreva, N. S., Kondrashov, F., &; Ivankov, D. N. (2020). HypercubeME: Two hundred million combinatorially complete datasets from a single experiment. Bioinformatics. Oxford Academic.https://doi.org/10.1093/bioinformatics/btz841 

Galan, S., Machnik, N. N., Kruse, K., Díaz, N., Marti-Renom, M. A., &; Vaquerizas, J. M. (2020). CHESS enables quantitative comparison of chromatin contact data and automatic feature extraction. Nature Genetics. Springer Nature.https://doi.org/10.1038/s41588-020-00712-y