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Ruess, J., &; Lygeros, J. (2015). Moment-based methods for parameter inference and experiment design for stochastic biochemical reaction networks. ACM Transactions on Modeling and Computer Simulation. ACM.https://doi.org/10.1145/2688906 
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Tkadik, G., Dubuis, J., Petkova, M., &; Gregor, T. (2015). Positional information, positional error, and readout precision in morphogenesis: A mathematical framework. Genetics. Genetics Society of America.https://doi.org/10.1534/genetics.114.171850 
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Sokolowski, T. R., &; Tkadik, G. (2015). Optimizing information flow in small genetic networks. IV. Spatial coupling. Physical Review E Statistical Nonlinear and Soft Matter Physics. American Institute of Physics.https://doi.org/10.1103/PhysRevE.91.062710 
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Friedlander, T., Mayo, A. E., Tlusty, T., &; Alon, U. (2015). Supporting information text. Public Library of Science.https://doi.org/10.1371/journal.pcbi.1004055.s001 
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Friedlander, T., Mayo, A., Tlusty, T., &; Alon, U. (2015). Evolution of bow-tie architectures in biology. PLoS Computational Biology. Public Library of Science.https://doi.org/10.1371/journal.pcbi.1004055 
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Friedlander, T., Mayo, A. E., Tlusty, T., &; Alon, U. (2015). Evolutionary simulation code. Public Library of Science.https://doi.org/10.1371/journal.pcbi.1004055.s002 
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Tugrul, M., Paixao, T., Barton, N. H., &; Tkadik, G. (2015). Other fitness models for comparison &; for interacting TFBSs. Public Library of Science.https://doi.org/10.1371/journal.pgen.1005639.s001 
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Tugrul, M., Paixao, T., Barton, N. H., &; Tkadik, G. (2015). Dynamics of transcription factor binding site evolution. PLoS Genetics. Public Library of Science.https://doi.org/10.1371/journal.pgen.1005639 
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Cepeda Humerez, S. A., Rieckh, G., &; Tkadik, G. (2015). Stochastic proofreading mechanism alleviates crosstalk in transcriptional regulation. Physical Review Letters. American Physical Society.https://doi.org/10.1103/PhysRevLett.115.248101 
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Martius, G. S., &; Olbrich, E. (2015). Quantifying emergent behavior of autonomous robots. Entropy. MDPI.https://doi.org/10.3390/e17107266 
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Savin, C., &; Denève, S. (2014). Spatio-temporal representations of uncertainty in spiking neural networks (Vol. 3, pp. 2024–2032). Presented at the NIPS: Neural Information Processing Systems, Montreal, Canada: Neural Information Processing Systems.
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Hermundstad, A., Briguglio, J., Conte, M., Victor, J., Balasubramanian, V., &; Tkadik, G. (2014). Variance predicts salience in central sensory processing. ELife. eLife Sciences Publications.https://doi.org/10.7554/eLife.03722 
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Kollár, R., Bodova, K., Nosek, J., &; Tomáska, d. (2014). Mathematical model of alternative mechanism of telomere length maintenance. Physical Review E Statistical Nonlinear and Soft Matter Physics. American Institute of Physics.https://doi.org/10.1103/PhysRevE.89.032701 
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Ezard, T., Prizak, R., &; Hoyle, R. (2014). The fitness costs of adaptation via phenotypic plasticity and maternal effects. Functional Ecology. Wiley-Blackwell.https://doi.org/10.1111/1365-2435.12207 
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Humplik, J., Hill, A., &; Nowak, M. (2014). Evolutionary dynamics of infectious diseases in finite populations. Journal of Theoretical Biology. Elsevier.https://doi.org/10.1016/j.jtbi.2014.06.039 
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Savin, C., &; Triesch, J. (2014). Emergence of task-dependent representations in working memory circuits. Frontiers in Computational Neuroscience. Frontiers Research Foundation.https://doi.org/10.3389/fncom.2014.00057 
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Bodova, K., Paydarfar, D., &; Forger, D. (2014). Characterizing spiking in noisy type II neurons. https://doi.org/10.1016/j.jtbi.2014.09.041__Journal of Theoretical Biology. Academic Press.https://doi.org/10.1016/j.jtbi.2014.09.041 
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Botella Soler, V., &; Glendinning, P. (2014). Hierarchy and polysynchrony in an adaptive network . Physical Review E Statistical Nonlinear and Soft Matter Physics. American Institute of Physics.https://doi.org/10.1103/PhysRevE.89.062809 
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Rieckh, G., &; Tkadik, G. (2014). Noise and information transmission in promoters with multiple internal states. Biophysical Journal. Biophysical Society.https://doi.org/10.1016/j.bpj.2014.01.014 
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