Ngampruetikorn, Vudtiwat, Vedant Sachdeva, Johanna Torrence, Jan Humplik, David J. Schwab, and Stephanie E. Palmer. “Inferring Couplings in Networks across Order-Disorder Phase Transitions.”https://doi.org/10.1103/PhysRevResearch.4.023240__Physical Review Research. American Physical Society, 2022.https://doi.org/10.1103/PhysRevResearch.4.023240 .

Zoller, Benjamin, Thomas Gregor, and Gasper Tkadik. “Eukaryotic Gene Regulation at Equilibrium, or Non?”https://doi.org/10.1016/j.coisb.2022.100435__Current Opinion in Systems Biology. Elsevier, 2022.https://doi.org/10.1016/j.coisb.2022.100435 .

Zisis, Themistoklis, David Brückner, Tom Brandstätter, Wei Xiong Siow, Joseph d’Alessandro, Angelika M. Vollmar, Chase P. Broedersz, and Stefan Zahler. “Disentangling Cadherin-Mediated Cell-Cell Interactions in Collective Cancer Cell Migration.”https://doi.org/10.1016/j.bpj.2021.12.006__Biophysical Journal. Elsevier, 2022.https://doi.org/10.1016/j.bpj.2021.12.006 .

Lagator, Mato, Srdjan Sarikas, Magdalena Steinrueck, David Toledo-Aparicio, Jonathan P Bollback, Calin C Guet, and Gasper Tkadik. “Predicting Bacterial Promoter Function and Evolution from Random Sequences.”https://doi.org/10.7554/eLife.64543__ELife. eLife Sciences Publications, 2022.https://doi.org/10.7554/eLife.64543 .

Mlynarski, Wiktor F, and Gasper Tkadik. “Efficient Coding Theory of Dynamic Attentional Modulation.”https://doi.org/10.1371/journal.pbio.3001889__PLoS Biology. Public Library of Science, 2022.https://doi.org/10.1371/journal.pbio.3001889 .

Hledik, Michal, Nicholas H Barton, and Gasper Tkadik. “Accumulation and Maintenance of Information in Evolution.”https://doi.org/10.1073/pnas.2123152119__Proceedings of the National Academy of Sciences. Proceedings of the National Academy of Sciences, 2022.https://doi.org/10.1073/pnas.2123152119 .

Bodova, Katarina, Eniko Szep, and Nicholas H Barton. “Dynamic Maximum Entropy Provides Accurate Approximation of Structured Population Dynamics.”https://doi.org/10.1371/journal.pcbi.1009661__PLoS Computational Biology. Public Library of Science, 2021.https://doi.org/10.1371/journal.pcbi.1009661 .

Lombardi, Fabrizio, Selver Pepic, Oren Shriki, Gasper Tkadik, and Daniele De Martino. “Quantifying the Coexistence of Neuronal Oscillations and Avalanches.”https://doi.org/10.48550/ARXIV.2108.06686__arXiv, n.d.https://doi.org/10.48550/ARXIV.2108.06686 .

Kavcic, Bor, and Gasper Tkadik. “Token-Driven Totally Asymmetric Simple Exclusion Process.”https://doi.org/10.48550/arXiv.2112.13558__ArXiv, n.d.https://doi.org/10.48550/arXiv.2112.13558 .

Lombardi, Fabrizio, Oren Shriki, Hans J Herrmann, and Lucilla de Arcangelis. “Long-Range Temporal Correlations in the Broadband Resting State Activity of the Human Brain Revealed by Neuronal Avalanches.”https://doi.org/10.1016/j.neucom.2020.05.126__Neurocomputing. Elsevier, 2021.https://doi.org/10.1016/j.neucom.2020.05.126 .

Tkadik, Gasper, and Thomas Gregor. “The Many Bits of Positional Information.”https://doi.org/10.1242/dev.176065__Development. The Company of Biologists, 2021.https://doi.org/10.1242/dev.176065 .

Mlynarski, Wiktor F, and Ann M. Hermundstad. “Efficient and Adaptive Sensory Codes.”https://doi.org/10.1038/s41593-021-00846-0__Nature Neuroscience. Springer Nature, 2021.https://doi.org/10.1038/s41593-021-00846-0 .

Zisis, Themistoklis, Jan Schwarz, Miriam Balles, Maibritt Kretschmer, Maria Nemethova, Remy P Chait, Robert Hauschild, et al. “Sequential and Switchable Patterning for Studying Cellular Processes under Spatiotemporal Control.”https://doi.org/10.1021/acsami.1c09850__ACS Applied Materials and Interfaces. American Chemical Society, 2021.https://doi.org/10.1021/acsami.1c09850 .

Gabrielaitis, Mantas. “Fast and Accurate Amplitude Demodulation of Wideband Signals.”https://doi.org/10.1109/TSP.2021.3087899__IEEE Transactions on Signal Processing. Institute of Electrical and Electronics Engineers, 2021.https://doi.org/10.1109/TSP.2021.3087899 .

Chalk, Matthew J, Gasper Tkadik, and Olivier Marre. “Inferring the Function Performed by a Recurrent Neural Network.”https://doi.org/10.1371/journal.pone.0248940__PLoS ONE. Public Library of Science, 2021.https://doi.org/10.1371/journal.pone.0248940 .

Kavcic, Bor, Gasper Tkadik, and Mark Tobias Bollenbach. “Minimal Biophysical Model of Combined Antibiotic Action.”https://doi.org/10.1371/journal.pcbi.1008529__PLOS Computational Biology. Public Library of Science, 2021.https://doi.org/10.1371/journal.pcbi.1008529 .

Nagy-Staron, Anna A, Kathrin Tomasek, Caroline Caruso Carter, Elisabeth Sonnleitner, Bor Kavcic, Tiago Paixão, and Calin C Guet. “Local Genetic Context Shapes the Function of a Gene Regulatory Network.”https://doi.org/10.7554/elife.65993__ELife. eLife Sciences Publications, 2021.https://doi.org/10.7554/elife.65993 .

Mlynarski, Wiktor F, Michal Hledik, Thomas R Sokolowski, and Gasper Tkadik. “Statistical Analysis and Optimality of Neural Systems.”https://doi.org/10.1016/j.neuron.2021.01.020__Neuron. Cell Press, 2021.https://doi.org/10.1016/j.neuron.2021.01.020 .

Nardin, Michele, Jozsef L Csicsvari, Gasper Tkadik, and Cristina Savin. “The Structure of Hippocampal C Interactions Optimizes Spatial Coding across Experience.”https://doi.org/10.1101/2021.09.28.460602__BioRxiv. Cold Spring Harbor Laboratory, n.d.https://doi.org/10.1101/2021.09.28.460602 .

Lombardi, Fabrizio, Jilin W.J.L. Wang, Xiyun Zhang, and Plamen Ch Ivanov. “Power-Law Correlations and Coupling of Active and Quiet States Underlie a Class of Complex Systems with Self-Organization at Criticality.”https://doi.org/10.1051/epjconf/202023000005__EPJ Web of Conferences. EDP Sciences, 2020.https://doi.org/10.1051/epjconf/202023000005 .